27 results on '"Ip, Emilia"'
Search Results
2. A tumor focused approach to resolving the etiology of DNA mismatch repair deficient tumors classified as suspected Lynch syndrome
- Author
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Walker, Romy, Mahmood, Khalid, Joo, Jihoon E., Clendenning, Mark, Georgeson, Peter, Como, Julia, Joseland, Sharelle, Preston, Susan G., Antill, Yoland, Austin, Rachel, Boussioutas, Alex, Bowman, Michelle, Burke, Jo, Campbell, Ainsley, Daneshvar, Simin, Edwards, Emma, Gleeson, Margaret, Goodwin, Annabel, Harris, Marion T., Henderson, Alex, Higgins, Megan, Hopper, John L., Hutchinson, Ryan A., Ip, Emilia, Isbister, Joanne, Kasem, Kais, Marfan, Helen, Milnes, Di, Ng, Annabelle, Nichols, Cassandra, O’Connell, Shona, Pachter, Nicholas, Pope, Bernard J., Poplawski, Nicola, Ragunathan, Abiramy, Smyth, Courtney, Spigelman, Allan, Storey, Kirsty, Susman, Rachel, Taylor, Jessica A., Warwick, Linda, Wilding, Mathilda, Williams, Rachel, Win, Aung K., Walsh, Michael D., Macrae, Finlay A., Jenkins, Mark A., Rosty, Christophe, Winship, Ingrid M., and Buchanan, Daniel D.
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- 2023
- Full Text
- View/download PDF
3. Identifying primary and secondary MLH1 epimutation carriers displaying low-level constitutional MLH1 methylation using droplet digital PCR and genome-wide DNA methylation profiling of colorectal cancers
- Author
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Joo, Jihoon E., Mahmood, Khalid, Walker, Romy, Georgeson, Peter, Candiloro, Ida, Clendenning, Mark, Como, Julia, Joseland, Sharelle, Preston, Susan, Graversen, Lise, Wilding, Mathilda, Field, Michael, Lemon, Michelle, Wakeling, Janette, Marfan, Helen, Susman, Rachel, Isbister, Joanne, Edwards, Emma, Bowman, Michelle, Kirk, Judy, Ip, Emilia, McKay, Lynne, Antill, Yoland, Hopper, John L., Boussioutas, Alex, Macrae, Finlay A., Dobrovic, Alexander, Jenkins, Mark A., Rosty, Christophe, Winship, Ingrid M., and Buchanan, Daniel D.
- Subjects
Genome wide DNA methylation ,MLH1 epimutation ,Lynch syndrome ,MLH1 methylation ,MMR deficiency ,Colorectal cancer - Abstract
Background: MLH1 epimutation is characterised by constitutional monoallelic MLH1 promoter hypermethylation, which can cause colorectal cancer (CRC). Tumour molecular profiles of MLH1 epimutation CRCs were used to classify germline MLH1 promoter variants of uncertain significance and MLH1 methylated early-onset CRCs (EOCRCs). Genome-wide DNA methylation and somatic mutational profiles of tumours from two germline MLH1: c.-11C > T and one MLH1: c.-[28A > G; 7C > T] carriers and three MLH1 methylated EOCRCs (< 45 years) were compared with 38 reference CRCs. Methylation-sensitive droplet digital PCR (ddPCR) was used to detect mosaic MLH1 methylation in blood, normal mucosa and buccal DNA. Results: Genome-wide methylation-based Consensus Clustering identified four clusters where the tumour methylation profiles of germline MLH1: c.-11C > T carriers and MLH1 methylated EOCRCs clustered with the constitutional MLH1 epimutation CRCs but not with the sporadic MLH1 methylated CRCs. Furthermore, monoallelic MLH1 methylation and APC promoter hypermethylation in tumour were observed in both MLH1 epimutation and germline MLH1: c.-11C > T carriers and MLH1 methylated EOCRCs. Mosaic constitutional MLH1 methylation in MLH1: c.-11C > T carriers and 1 of 3 MLH1 methylated EOCRCs was identified by methylation-sensitive ddPCR. Conclusions: Mosaic MLH1 epimutation underlies the CRC aetiology in MLH1: c.-11C > T germline carriers and a subset of MLH1 methylated EOCRCs. Tumour profiling and ultra-sensitive ddPCR methylation testing can be used to identify mosaic MLH1 epimutation carriers.
- Published
- 2023
4. DNA Mismatch Repair Gene Variant Classification: Evaluating the Utility of Somatic Mutations and Mismatch Repair Deficient Colonic Crypts and Endometrial Glands
- Author
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Walker, Romy, primary, Mahmood, Khalid, additional, Como, Julia, additional, Clendenning, Mark, additional, Joo, Jihoon E., additional, Georgeson, Peter, additional, Joseland, Sharelle, additional, Preston, Susan G., additional, Pope, Bernard J., additional, Chan, James M., additional, Austin, Rachel, additional, Bojadzieva, Jasmina, additional, Campbell, Ainsley, additional, Edwards, Emma, additional, Gleeson, Margaret, additional, Goodwin, Annabel, additional, Harris, Marion T., additional, Ip, Emilia, additional, Kirk, Judy, additional, Mansour, Julia, additional, Mar Fan, Helen, additional, Nichols, Cassandra, additional, Pachter, Nicholas, additional, Ragunathan, Abiramy, additional, Spigelman, Allan, additional, Susman, Rachel, additional, Christie, Michael, additional, Jenkins, Mark A., additional, Pai, Rish K., additional, Rosty, Christophe, additional, Macrae, Finlay A., additional, Winship, Ingrid M., additional, and Buchanan, Daniel D., additional
- Published
- 2023
- Full Text
- View/download PDF
5. Circulating Tumour Cell Associated MicroRNA Profiles Change during Chemoradiation and Are Predictive of Response in Locally Advanced Rectal Cancer
- Author
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Lim, Stephanie H., primary, Chua, Wei, additional, Ng, Weng, additional, Ip, Emilia, additional, Marques, Tania M., additional, Tran, Nham T., additional, Gama-Carvalho, Margarida, additional, Asghari, Ray, additional, Henderson, Christopher, additional, Ma, Yafeng, additional, de Souza, Paul, additional, and Spring, Kevin J., additional
- Published
- 2023
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6. An Australian mainstream genetic testing program: Clinicians views about current and future practices.
- Author
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Young, Alison Luk, Ip, Emilia, Scheinberg, Tahlia, Harrison, Michelle, Beale, Philip, and Goodwin, Annabel
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GENETIC testing , *ONCOLOGY , *PROSTATE cancer patients , *MEDICAL personnel , *CANCER patients , *ENDOMETRIAL cancer - Abstract
Purpose: Germline genetic testing results can guide treatment decisions for oncology patients and are now offered to many cancer patients. Mainstream testing refers to genetic testing arranged by a non‐genetics specialist. This repeated cross‐sectional study aimed: (1) to capture clinician views on the existing mainstreaming genetic testing program for ovarian, breast, prostate, and endometrial cancer patients, and (2) to ascertain the interest of clinicians to consider changing practice to adopt mainstream testing. Methods: Mainstreaming has occurred since 2015 for patients with ovarian and some breast cancer patients, expanding to include prostate cancer patients in 2019, and endometrial cancer patients in 2020. Two web‐based surveys were administered within two health districts, covering seven hospitals in NSW. Results: Fifty‐four clinicians (70% response rate) participated. Clinicians who had arranged mainstream genetic testing (n = 30) were overall satisfied (76%), viewed the process as time‐efficient and accessible for patients, and desired continuation of the program. Of those clinicians yet to engage in the program (n = 24), 88% expressed an interest in learning about mainstream testing. These clinicians identified time constraints, maintenance of current genetic knowledge, and completing the consenting and counseling process as barriers to mainstreaming. Future mainstreaming models are discussed. Conclusion: From the clinician's perspective, the mainstreaming program is considered a desirable pathway for germline testing of oncology patients. Access to ongoing education and resources is needed for the ongoing success of the program. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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7. Additional file 1 of A tumor focused approach to resolving the etiology of DNA mismatch repair deficient tumors classified as suspected Lynch syndrome
- Author
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Walker, Romy, Mahmood, Khalid, Joo, Jihoon E., Clendenning, Mark, Georgeson, Peter, Como, Julia, Joseland, Sharelle, Preston, Susan G., Antill, Yoland, Austin, Rachel, Boussioutas, Alex, Bowman, Michelle, Burke, Jo, Campbell, Ainsley, Daneshvar, Simin, Edwards, Emma, Gleeson, Margaret, Goodwin, Annabel, Harris, Marion T., Henderson, Alex, Higgins, Megan, Hopper, John L., Hutchinson, Ryan A., Ip, Emilia, Isbister, Joanne, Kasem, Kais, Marfan, Helen, Milnes, Di, Ng, Annabelle, Nichols, Cassandra, O’Connell, Shona, Pachter, Nicholas, Pope, Bernard J., Poplawski, Nicola, Ragunathan, Abiramy, Smyth, Courtney, Spigelman, Allan, Storey, Kirsty, Susman, Rachel, Taylor, Jessica A., Warwick, Linda, Wilding, Mathilda, Williams, Rachel, Win, Aung K., Walsh, Michael D., Macrae, Finlay A., Jenkins, Mark A., Rosty, Christophe, Winship, Ingrid M., and Buchanan, Daniel D.
- Abstract
Additional file 1: Table S1. Table displaying optimal cut-offs for the six tumor features determined previously (Walker et al. 2023) in the additive feature combination approach. Table S2. SLS tumors (n=13) that showed discordant MMR IHC findings between clinical diagnostic testing before study entry and testing completed internally during this study and the change in their MMR status and/or pattern of MMR protein loss. Table S3. The concordance between the final MMR IHC result and the predicted dMMR status from the additive feature combination approach overall and by tumor type. Table S4. The tumor MLH1 methylation testing completed for SLS tumors prior to entering the study showing either negative, inconclusive, or not tested results and the subsequent MLH1 methylation testing results from internal testing using MethyLight and MS-HRM assays highlighting the positive MLH1 methylation results found by this study. Table S5. Presentation of germline pathogenic variants and variants of uncertain clinical significance (VUS) identified in the MMR, MUTYH and POLE genes. Table S6. Summary of the clinicopathological features for the double somatic MMR mutation (dMMR-DS) tumors overall and by tumor type. Figure S1. Bar plots presenting the results from the additive tumor feature combination approach to assess the MMR status in the double somatic mutation cohort for A) all tumors combined and separated by B) CRC, C) EC and D) SST tissue types. Figure S2. Bar plot presenting the prevalence of pathogenic/likely pathogenic somatic mutations (including loss of heterozygosity, LOH) by subtype for the study cohort. Figure S3. Pie graphs displaying the frequency of the mutation combination type (two single somatic mutations versus a single somatic mutation with loss of heterozygosity (LOH)) as well as the type of mutation A) overall and B) separated by tissue type. Figure S4. Bar graphs presenting the site distribution in the double somatic mutation cohort across all CRCs and SSTs. Figure S5. Boxplots presenting the site distribution in the double somatic mutation cohort across all A) CRCs and B) SSTs. Significant (< 0.05) p-values are indicated for pairwise (t-test) and multigroup comparisons (Anova). Figure S6. Scatter plots presenting the PREMM5 score distribution in the test cohort for A) all tumors combined and separated by B) CRC, C) EC and D) SST tissue types. Figure S7. The distribution of tumor values for each of the six features that are included in the additive feature combination approach for determining tumor dMMR status grouped by molecular subtype and by combining sporadic dMMR groups dMMR-DS and dMMR-MLH1me into a “sporadic combined” group.
- Published
- 2023
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8. Evaluation of a mainstream genetic testing program for women with ovarian or breast cancer
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Ip, Emilia, primary, Young, Alison Luk, additional, Scheinberg, Tahlia, additional, Harrison, Michelle, additional, Beale, Philip, additional, and Goodwin, Annabel, additional
- Published
- 2022
- Full Text
- View/download PDF
9. Catastrophic chemotherapy toxicity leading to diagnosis of Fanconi anaemia due to FANCD1/BRCA2 during adulthood: description of an emerging phenotype
- Author
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Ip, Emilia, primary, McNeil, Catriona, additional, Grimison, Peter, additional, Scheinberg, Tahlia, additional, Tudini, Emma, additional, Ho, Gladys, additional, Scott, Rodney J, additional, Brown, Christina, additional, Sandroussi, Charbel, additional, Guitera, Pascale, additional, Spurdle, Amanda B, additional, and Goodwin, Annabel, additional
- Published
- 2021
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10. Catastrophic chemotherapy toxicity leading to diagnosis of Fanconi anaemia due to FANCD1/BRCA2 during adulthood: description of an emerging phenotype.
- Author
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Ip, Emilia, McNeil, Catriona, Grimison, Peter, Scheinberg, Tahlia, Tudini, Emma, Ho, Gladys, Scott, Rodney J., Brown, Christina, Sandroussi, Charbel, Guitera, Pascale, Spurdle, Amanda B., and Goodwin, Annabel
- Abstract
Fanconi anaemia due to biallelic loss of BRCA2 (Fanconi anaemia subtype D1) is traditionally diagnosed during childhood with cancer rates historically reported as 97% by 5.2 years. This report describes an adult woman with a history of primary ovarian failure, who was diagnosed with gastrointestinal adenocarcinoma and BRCA2-associated Fanconi anaemia at 23 years of age, only after she suffered severe chemotherapy toxicity. The diagnostic challenges include atypical presentation, initial false-negative chromosome fragility testing and variant classification. It highlights gastrointestinal adenocarcinoma as a consideration for adults with biallelic BRCA2 pathogenic variants with implications for surveillance. After over 4 years, the patient has no evidence of gastrointestinal cancer recurrence although the tumour was initially considered only borderline resectable. The use of platinum-based chemotherapy, to which heterozygous BRCA2 carriers are known to respond, may have had a beneficial anticancer effect, but caution is advised given its extreme immediate toxicity at standard dosing. Fanconi anaemia should be considered as a cause for women with primary ovarian failure of unknown cause and referral to cancer genetic services recommended when there is a family history of cancer in the hereditary breast/ovarian cancer spectrum. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
11. Evaluation of a Mainstream Model of Genetic Testing for Men With Prostate Cancer
- Author
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Scheinberg, Tahlia, primary, Goodwin, Annabel, additional, Ip, Emilia, additional, Linton, Anthony, additional, Mak, Blossom, additional, Smith, David P., additional, Stockler, Martin R., additional, Strach, Madeleine C., additional, Tran, Ben, additional, Young, Alison L., additional, Zhang, Alison Y., additional, Mahon, Kate L., additional, and Horvath, Lisa G., additional
- Published
- 2021
- Full Text
- View/download PDF
12. Evaluation of a mainstream model of genetic testing for men with prostate cancer.
- Author
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Scheinberg, Tahlia, primary, Goodwin, Annabel, additional, Ip, Emilia, additional, Linton, Anthony, additional, Mak, Blossom, additional, Smith, David P, additional, Stockler, Martin R., additional, Strach, Madeleine Cornelia, additional, Tran, Ben, additional, Young, Alison Luk, additional, Zhang, Alison Yan, additional, Mahon, Kate Lynette, additional, and Horvath, Lisa, additional
- Published
- 2020
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- View/download PDF
13. Prognostic utility of serial18F-FDG-PET/CT in patients with locally advanced rectal cancer who underwent tri-modality treatment
- Author
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Fernando, Sumal, primary, Lin, Michael, additional, Pham, Trang Thanh, additional, Chong, Shanley, additional, Ip, Emilia, additional, Wong, Karen, additional, Chua, Wei, additional, Ng, Weng, additional, Lin, Peter, additional, and Lim, Stephanie, additional
- Published
- 2020
- Full Text
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14. Hepatic expression of cyclooxygenase-2 (COX-2) correlates with steatohepatitis in mice fed a methionine and choline deficient diet
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YU, JUN, IP, EMILIA, HOU, HELEN JY, PENA, AILEEN DELA, GEORGE, JACOB, and FARRELL, GEOFF
- Published
- 2003
15. Health-Related Quality of Life during Chemoradiation in Locally Advanced Rectal Cancer: Impacts and Ethnic Disparities
- Author
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Lim, Stephanie Hui-Su, primary, Ip, Emilia, additional, Ng, Weng, additional, Chua, Wei, additional, Asghari, Ray, additional, Roohullah, Aflah, additional, Descallar, Joseph, additional, Henderson, Christopher, additional, Spring, Kevin, additional, de Souza, Paul, additional, and King, Madeleine T., additional
- Published
- 2019
- Full Text
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16. Catastrophic chemotherapy toxicity leading to diagnosis of Fanconi anaemia due to FANCD1/BRCA2during adulthood: description of an emerging phenotype
- Author
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Ip, Emilia, McNeil, Catriona, Grimison, Peter, Scheinberg, Tahlia, Tudini, Emma, Ho, Gladys, Scott, Rodney J, Brown, Christina, Sandroussi, Charbel, Guitera, Pascale, Spurdle, Amanda B, and Goodwin, Annabel
- Abstract
Fanconi anaemia due to biallelic loss of BRCA2(Fanconi anaemia subtype D1) is traditionally diagnosed during childhood with cancer rates historically reported as 97% by 5.2 years. This report describes an adult woman with a history of primary ovarian failure, who was diagnosed with gastrointestinal adenocarcinoma and BRCA2-associated Fanconi anaemia at 23 years of age, only after she suffered severe chemotherapy toxicity. The diagnostic challenges include atypical presentation, initial false-negative chromosome fragility testing and variant classification. It highlights gastrointestinal adenocarcinoma as a consideration for adults with biallelic BRCA2pathogenic variants with implications for surveillance. After over 4 years, the patient has no evidence of gastrointestinal cancer recurrence although the tumour was initially considered only borderline resectable. The use of platinum-based chemotherapy, to which heterozygous BRCA2carriers are known to respond, may have had a beneficial anticancer effect, but caution is advised given its extreme immediate toxicity at standard dosing. Fanconi anaemia should be considered as a cause for women with primary ovarian failure of unknown cause and referral to cancer genetic services recommended when there is a family history of cancer in the hereditary breast/ovarian cancer spectrum.
- Published
- 2022
- Full Text
- View/download PDF
17. Serum microRNA expression during neoadjuvant chemoradiation for rectal cancer.
- Author
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Lim, Stephanie Hui-Su, primary, Ip, Emilia, additional, Chua, Wei, additional, Ng, Weng, additional, Henderson, Christopher, additional, Shin, J-S, additional, Harris, Benjamin Howell Lole, additional, Barberis, Alessandro, additional, Cowley, Mark, additional, De Souza, Paul L., additional, and Spring, Kevin, additional
- Published
- 2017
- Full Text
- View/download PDF
18. Administration of the potent PPARalpha agonist, Wy-14,643, reverses nutritional fibrosis and steatohepatitis in mice.
- Author
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UCL - (SLuc) Service de gastro-entérologie, Ip, Emilia, Farrell, Geoff, Hall, Pauline, Robertson, Graham, Leclercq, Isabelle, UCL - (SLuc) Service de gastro-entérologie, Ip, Emilia, Farrell, Geoff, Hall, Pauline, Robertson, Graham, and Leclercq, Isabelle
- Abstract
Administration of a methionine and choline deficient (MCD) diet to rodents causes progressive fibrosing steatohepatitis pathologically similar to human metabolic steatohepatitis. We have previously shown that the peroxisome proliferator-activated receptor-alpha (PPARalpha) agonist, Wy-14,643, prevented the development of MCD diet-induced steatohepatitis. We have now tested whether Wy-14,643 ameliorates established steatohepatitis and fibrosis. Male C57BL6 mice were fed the MCD diet for 51 days to induce severe steatohepatitis. They were then treated with Wy-14,643 together with the MCD diet for 5 or 12 days; positive controls continued on the MCD diet for 5 or 12 days. After 5 days of Wy-14,643 treatment, alanine aminotransferase (ALT) levels were significantly decreased, steatohepatitis less severe, and hepatic lipoperoxides significantly reduced. After 12 days, hepatic triglycerides were normalized and there was near resolution of histological changes. MCD dietary feeding was associated with increased expression of vascular cell adhesion molecule (VCAM)-1, and increased numbers of activated macrophages in the liver. Treatment with Wy-14,643 reduced VCAM-1 expression and macrophage numbers. MCD diet-fed mice developed hepatic fibrosis with increased hepatic collagen alpha1(I), tissue inhibitor of metalloproteinases (TIMP)-1, TIMP-2, and matrix metalloproteinase (MMP)-13 mRNA levels. After treatment with Wy-14,643, expression of these genes was reduced in a manner that paralleled the reduction in activated hepatic stellate cells and near resolution of liver fibrosis. In conclusion, the present study shows that MCD diet-induced fibrosing steatohepatitis can be reversed by treatment with Wy-14,643. It is likely that activation of PPARalpha reverses fibrosis indirectly by reducing stimuli, such as lipid peroxides, and activation of cells responsible for promoting hepatic fibrosis.
- Published
- 2004
19. Central role of PPARalpha-dependent hepatic lipid turnover in dietary steatohepatitis in mice.
- Author
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UCL - MD/MINT - Département de médecine interne, UCL - (SLuc) Service de gastro-entérologie, Ip, Emilia, Farrell, Geoffrey C, Robertson, Graham, Hall, Pauline, Kirsch, Richard, Leclercq, Isabelle, UCL - MD/MINT - Département de médecine interne, UCL - (SLuc) Service de gastro-entérologie, Ip, Emilia, Farrell, Geoffrey C, Robertson, Graham, Hall, Pauline, Kirsch, Richard, and Leclercq, Isabelle
- Abstract
We have proposed that steatohepatitis results from reactive oxygen species (ROS) acting on accumulated fatty acids to form proinflammatory lipoperoxides. Cytochrome P450 4a (Cyp4a) and Cyp2e1 are potential hepatic sources of ROS. We tested the hypothesis that increasing Cyp4a through activation of peroxisome proliferator-activated receptor alpha (PPARalpha) should aggravate steatohepatitis produced by feeding a methionine and choline deficient (MCD) diet. Conversely, we assessed dietary steatohepatitis in PPARalpha(-/-) mice that cannot up-regulate Cyp4a. Male wild type (wt) or PPARalpha(-/-) mice (C57BL6 background) were fed the MCD diet with or without Wy-14,643 (0.1% wt/wt), a potent PPARalpha agonist. Controls were fed the same diet supplemented with methionine and choline. After 5 weeks, wt mice fed the MCD diet developed moderate steatohepatitis and alanine aminotransferase (ALT) levels were increased. Wy-14,643 prevented rather than increased liver injury; ALT levels were only mildly elevated whereas steatohepatitis was absent. Wy-14,643 up-regulated mRNA for liver fatty acid binding protein and peroxisomal beta-oxidation enzymes (acyl-CoA oxidase, bifunctional enzyme, and ketothiolase), thereby reducing hepatic triglycerides and preventing steatosis. In wt mice, dietary feeding up-regulated Cyp4a14 mRNA 2.7-fold and increased hepatic lipoperoxides compared with controls. Wy-14,643 prevented hepatic lipoperoxides from accumulating despite an 18-fold increase in both Cyp4a10 and Cyp4a14 mRNA. PPARalpha(-/-) mice fed the MCD diet developed more severe steatohepatitis than wt mice, and were unaffected by Wy-14,643. In conclusion, PPARalpha activation both increases Cyp4a expression and enhances hepatic lipid turnover; the latter effect removes fatty acids as substrate for lipid peroxidation and is sufficiently powerful to prevent the development of dietary steatohepatitis.
- Published
- 2003
20. Central role of PPARalpha-dependent hepatic lipid turnover in dietary steatohepatitis in mice
- Author
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Ip, Emilia, Farrell, Geoffrey, Robertson, Graham, Hall, Pauline, Kirsch, Richard, Leclercq, Isabelle, Ip, Emilia, Farrell, Geoffrey, Robertson, Graham, Hall, Pauline, Kirsch, Richard, and Leclercq, Isabelle
- Abstract
We have proposed that steatohepatitis results from reactive oxygen species (ROS) acting on accumulated fatty acids to form proinflammatory lipoperoxides. Cytochrome P450 4a (Cyp4a) and Cyp2e1 are potential hepatic sources of ROS. We tested the hypothesis
- Published
- 2003
21. COX-2 induction in mice with experimental nutritional steatohepatitis: Role as pro-inflammatory mediator
- Author
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Yu, Jun, primary, Ip, Emilia, additional, dela Peña, Aileen, additional, Hou, Jing Yun, additional, Sesha, Jayshree, additional, Pera, Natasha, additional, Hall, Pauline, additional, Kirsch, Richard, additional, Leclercq, Isabelle, additional, and Farrell, Geoffrey C., additional
- Published
- 2006
- Full Text
- View/download PDF
22. Administration of the potent PPAR? agonist, Wy-14,643, reverses nutritional fibrosis and steatohepatitis in mice
- Author
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Ip, Emilia, primary, Farrell, Geoff, additional, Hall, Pauline, additional, Robertson, Graham, additional, and Leclercq, Isabelle, additional
- Published
- 2004
- Full Text
- View/download PDF
23. Prognostic utility of serial 18F-FDG-PET/CT in patients with locally advanced rectal cancer who underwent tri-modality treatment.
- Author
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Fernando, Sumal, Lin, Michael, Pham, Trang Thanh, Chong, Shanley, Ip, Emilia, Wong, Karen, Chua, Wei, Ng, Weng, Lin, Peter, and Lim, Stephanie
- Subjects
RECTAL cancer ,POSITRON emission tomography computed tomography ,PROGRESSION-free survival ,REGRESSION analysis ,STATISTICS - Abstract
This study explored the value of serial 18-fludeoxyglucose-positron emission tomography (
18 F-FDG-PET/CT) in predicting disease-free survival (DFS) in locally advanced rectal cancer (LARC) treated with neoadjuvant chemoradiation (NCRT) and surgery. We prospectively studied 46 patients with LARC who underwent NCRT and surgery.18 F-FDG-PET/CT scans were performed at three time-points before surgery (pre-NCRT-PET1, during NCRT-PET2 and following completion of NCRT-PET3). The following semi-quantitative PET parameters were analysed at each time point: maximum standardized uptake value (SUVmax), SUVmean, metabolic tumour volume (MTV) and tumour lesion glycolysis (TLG). Absolute and percentage changes in these parameters were analysed between time points. Statistical analysis consisted of median tests, Cox regression and Kaplan–Meier analysis for DFS. The median follow-up time was 24 months. A reduction in PET parameters showed statistically significant differences for patients with recurrence compared to those without; percentage changes in MTV between PET1 and PET3 (cut-off: 87%, p = 0.023), percentage changes in TLG between PET1 and PET3 (cut-off: 94%, p = 0.02) and absolute change in MTV PET1 and PET2 (cut-off: 10.25, p = 0.001). An absolute reduction in MTV between PET1 and PET3 (p=0.013), a percentage reduction in TLG between PET1 and PET2 (p=0.021), SUVmax and SUVmean at PET2 (p = 0.01, p = 0.027 respectively)were also prognostic indicators of recurrence. MTV percentage change between PET1 and PET2 and SUVmean percentage change between PET1 and PET3 were also trending towards significance (p = 0.052, p = 0.053 respectively). Serial18 F-FDG-PET/CT is a potentially reliable non-invasive method to predict recurrence in patients with LARC. Volumetric parameters were the best predictors. This could allow risk-stratification in patients who may benefit from conservative management. This paper will add to the literature in risk-stratifying patients with LARC based on prognosis, using18 F-FDG-PET/CT. This may improve patient outcomes by selecting suitable candidates for conservative management. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
24. Identifying primary and secondary MLH1 epimutation carriers displaying low-level constitutional MLH1 methylation using droplet digital PCR and genome-wide DNA methylation profiling of colorectal cancers.
- Author
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Joo JE, Mahmood K, Walker R, Georgeson P, Candiloro I, Clendenning M, Como J, Joseland S, Preston S, Graversen L, Wilding M, Field M, Lemon M, Wakeling J, Marfan H, Susman R, Isbister J, Edwards E, Bowman M, Kirk J, Ip E, McKay L, Antill Y, Hopper JL, Boussioutas A, Macrae FA, Dobrovic A, Jenkins MA, Rosty C, Winship IM, and Buchanan DD
- Subjects
- Humans, DNA Methylation, Promoter Regions, Genetic, Polymerase Chain Reaction, DNA, MutL Protein Homolog 1 genetics, Colorectal Neoplasms, Hereditary Nonpolyposis diagnosis, Colorectal Neoplasms, Hereditary Nonpolyposis genetics, Colorectal Neoplasms genetics
- Abstract
Background: MLH1 epimutation is characterised by constitutional monoallelic MLH1 promoter hypermethylation, which can cause colorectal cancer (CRC). Tumour molecular profiles of MLH1 epimutation CRCs were used to classify germline MLH1 promoter variants of uncertain significance and MLH1 methylated early-onset CRCs (EOCRCs). Genome-wide DNA methylation and somatic mutational profiles of tumours from two germline MLH1: c.-11C > T and one MLH1: c.-[28A > G; 7C > T] carriers and three MLH1 methylated EOCRCs (< 45 years) were compared with 38 reference CRCs. Methylation-sensitive droplet digital PCR (ddPCR) was used to detect mosaic MLH1 methylation in blood, normal mucosa and buccal DNA., Results: Genome-wide methylation-based Consensus Clustering identified four clusters where the tumour methylation profiles of germline MLH1: c.-11C > T carriers and MLH1 methylated EOCRCs clustered with the constitutional MLH1 epimutation CRCs but not with the sporadic MLH1 methylated CRCs. Furthermore, monoallelic MLH1 methylation and APC promoter hypermethylation in tumour were observed in both MLH1 epimutation and germline MLH1: c.-11C > T carriers and MLH1 methylated EOCRCs. Mosaic constitutional MLH1 methylation in MLH1: c.-11C > T carriers and 1 of 3 MLH1 methylated EOCRCs was identified by methylation-sensitive ddPCR., Conclusions: Mosaic MLH1 epimutation underlies the CRC aetiology in MLH1: c.-11C > T germline carriers and a subset of MLH1 methylated EOCRCs. Tumour profiling and ultra-sensitive ddPCR methylation testing can be used to identify mosaic MLH1 epimutation carriers., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
25. A tumor focused approach to resolving the etiology of DNA mismatch repair deficient tumors classified as suspected Lynch syndrome.
- Author
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Walker R, Mahmood K, Joo JE, Clendenning M, Georgeson P, Como J, Joseland S, Preston SG, Antill Y, Austin R, Boussioutas A, Bowman M, Burke J, Campbell A, Daneshvar S, Edwards E, Gleeson M, Goodwin A, Harris MT, Henderson A, Higgins M, Hopper JL, Hutchinson RA, Ip E, Isbister J, Kasem K, Marfan H, Milnes D, Ng A, Nichols C, O'Connell S, Pachter N, Pope BJ, Poplawski N, Ragunathan A, Smyth C, Spigelman A, Storey K, Susman R, Taylor JA, Warwick L, Wilding M, Williams R, Win AK, Walsh MD, Macrae FA, Jenkins MA, Rosty C, Winship IM, and Buchanan DD
- Abstract
Routine screening of tumors for DNA mismatch repair (MMR) deficiency (dMMR) in colorectal (CRC), endometrial (EC) and sebaceous skin (SST) tumors leads to a significant proportion of unresolved cases classified as suspected Lynch syndrome (SLS). SLS cases (n=135) were recruited from Family Cancer Clinics across Australia and New Zealand. Targeted panel sequencing was performed on tumor (n=137; 80xCRCs, 33xECs and 24xSSTs) and matched blood-derived DNA to assess for microsatellite instability status, tumor mutation burden, COSMIC tumor mutational signatures and to identify germline and somatic MMR gene variants. MMR immunohistochemistry (IHC) and MLH1 promoter methylation were repeated. In total, 86.9% of the 137 SLS tumors could be resolved into established subtypes. For 22.6% of these resolved SLS cases, primary MLH1 epimutations (2.2%) as well as previously undetected germline MMR pathogenic variants (1.5%), tumor MLH1 methylation (13.1%) or false positive dMMR IHC (5.8%) results were identified. Double somatic MMR gene mutations were the major cause of dMMR identified across each tumor type (73.9% of resolved cases, 64.2% overall, 70% of CRC, 45.5% of ECs and 70.8% of SSTs). The unresolved SLS tumors (13.1%) comprised tumors with only a single somatic (7.3%) or no somatic (5.8%) MMR gene mutations. A tumor-focused testing approach reclassified 86.9% of SLS into Lynch syndrome, sporadic dMMR or MMR-proficient cases. These findings support the incorporation of tumor sequencing and alternate MLH1 methylation assays into clinical diagnostics to reduce the number of SLS patients and provide more appropriate surveillance and screening recommendations.
- Published
- 2023
- Full Text
- View/download PDF
26. Prognostic utility of serial 18 F-FDG-PET/CT in patients with locally advanced rectal cancer who underwent tri-modality treatment.
- Author
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Fernando S, Lin M, Pham TT, Chong S, Ip E, Wong K, Chua W, Ng W, Lin P, and Lim S
- Subjects
- Aged, Chemoradiotherapy, Combined Modality Therapy, Female, Fluorodeoxyglucose F18, Glycolysis, Humans, Kaplan-Meier Estimate, Male, Middle Aged, Neoadjuvant Therapy, Neoplasm Recurrence, Local diagnostic imaging, Neoplasm Recurrence, Local pathology, Neoplasm Staging, Prospective Studies, Radiopharmaceuticals, Rectal Neoplasms pathology, Tumor Burden, Positron Emission Tomography Computed Tomography, Rectal Neoplasms diagnostic imaging, Rectal Neoplasms therapy
- Abstract
Objective: This study explored the value of serial 18-fludeoxyglucose-positron emission tomography (
18 F-FDG-PET/CT) in predicting disease-free survival (DFS) in locally advanced rectal cancer (LARC) treated with neoadjuvant chemoradiation (NCRT) and surgery., Methods: We prospectively studied 46 patients with LARC who underwent NCRT and surgery.18 F-FDG-PET/CT scans were performed at three time-points before surgery (pre-NCRT-PET1, during NCRT-PET2 and following completion of NCRT-PET3). The following semi-quantitative PET parameters were analysed at each time point: maximum standardized uptake value (SUVmax), SUVmean, metabolic tumour volume (MTV) and tumour lesion glycolysis (TLG). Absolute and percentage changes in these parameters were analysed between time points. Statistical analysis consisted of median tests, Cox regression and Kaplan-Meier analysis for DFS., Results: The median follow-up time was 24 months. A reduction in PET parameters showed statistically significant differences for patients with recurrence compared to those without; percentage changes in MTV between PET1 and PET3 (cut-off: 87%, p = 0.023), percentage changes in TLG between PET1 and PET3 (cut-off: 94%, p = 0.02) and absolute change in MTV PET1 and PET2 (cut-off: 10.25, p = 0.001).An absolute reduction in MTV between PET1 and PET3 (p=0.013), a percentage reduction in TLG between PET1 and PET2 (p=0.021), SUVmax and SUVmean at PET2 ( p = 0.01, p = 0.027 respectively)were also prognostic indicators of recurrence.MTV percentage change between PET1 and PET2 and SUVmean percentage change between PET1 and PET3 were also trending towards significance ( p = 0.052, p = 0.053 respectively)., Conclusion: Serial18 F-FDG-PET/CT is a potentially reliable non-invasive method to predict recurrence in patients with LARC. Volumetric parameters were the best predictors. This could allow risk-stratification in patients who may benefit from conservative management., Advances in Knowledge: This paper will add to the literature in risk-stratifying patients with LARC based on prognosis, using18 F-FDG-PET/CT. This may improve patient outcomes by selecting suitable candidates for conservative management.- Published
- 2020
- Full Text
- View/download PDF
27. Central role of PPARalpha-dependent hepatic lipid turnover in dietary steatohepatitis in mice.
- Author
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Ip E, Farrell GC, Robertson G, Hall P, Kirsch R, and Leclercq I
- Subjects
- Animal Feed, Animals, Anticholesteremic Agents pharmacology, Choline Deficiency, Cytochrome P-450 CYP4A, Cytochrome P-450 Enzyme System metabolism, Cytochrome P450 Family 4, Fatty Acids metabolism, Fatty Liver drug therapy, Female, Gene Expression Regulation, Enzymologic drug effects, Lipid Peroxidation physiology, Liver pathology, Male, Methionine deficiency, Mice, Mice, Inbred C57BL, Mice, Mutant Strains, Microsomes enzymology, Mixed Function Oxygenases metabolism, Pyrimidines pharmacology, Reactive Oxygen Species metabolism, Severity of Illness Index, Triglycerides blood, Fatty Liver metabolism, Fatty Liver physiopathology, Liver metabolism, Receptors, Cytoplasmic and Nuclear genetics, Receptors, Cytoplasmic and Nuclear metabolism, Transcription Factors genetics, Transcription Factors metabolism
- Abstract
We have proposed that steatohepatitis results from reactive oxygen species (ROS) acting on accumulated fatty acids to form proinflammatory lipoperoxides. Cytochrome P450 4a (Cyp4a) and Cyp2e1 are potential hepatic sources of ROS. We tested the hypothesis that increasing Cyp4a through activation of peroxisome proliferator-activated receptor alpha (PPARalpha) should aggravate steatohepatitis produced by feeding a methionine and choline deficient (MCD) diet. Conversely, we assessed dietary steatohepatitis in PPARalpha(-/-) mice that cannot up-regulate Cyp4a. Male wild type (wt) or PPARalpha(-/-) mice (C57BL6 background) were fed the MCD diet with or without Wy-14,643 (0.1% wt/wt), a potent PPARalpha agonist. Controls were fed the same diet supplemented with methionine and choline. After 5 weeks, wt mice fed the MCD diet developed moderate steatohepatitis and alanine aminotransferase (ALT) levels were increased. Wy-14,643 prevented rather than increased liver injury; ALT levels were only mildly elevated whereas steatohepatitis was absent. Wy-14,643 up-regulated mRNA for liver fatty acid binding protein and peroxisomal beta-oxidation enzymes (acyl-CoA oxidase, bifunctional enzyme, and ketothiolase), thereby reducing hepatic triglycerides and preventing steatosis. In wt mice, dietary feeding up-regulated Cyp4a14 mRNA 2.7-fold and increased hepatic lipoperoxides compared with controls. Wy-14,643 prevented hepatic lipoperoxides from accumulating despite an 18-fold increase in both Cyp4a10 and Cyp4a14 mRNA. PPARalpha(-/-) mice fed the MCD diet developed more severe steatohepatitis than wt mice, and were unaffected by Wy-14,643. In conclusion, PPARalpha activation both increases Cyp4a expression and enhances hepatic lipid turnover; the latter effect removes fatty acids as substrate for lipid peroxidation and is sufficiently powerful to prevent the development of dietary steatohepatitis.
- Published
- 2003
- Full Text
- View/download PDF
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