175 results on '"Ionel Popa"'
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2. Jet stream position explains regional anomalies in European beech forest productivity and tree growth
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Isabel Dorado-Liñán, Blanca Ayarzagüena, Flurin Babst, Guobao Xu, Luis Gil, Giovanna Battipaglia, Allan Buras, Vojtěch Čada, J. Julio Camarero, Liam Cavin, Hugues Claessens, Igor Drobyshev, Balázs Garamszegi, Michael Grabner, Andrew Hacket-Pain, Claudia Hartl, Andrea Hevia, Pavel Janda, Alistair S. Jump, Marko Kazimirovic, Srdjan Keren, Juergen Kreyling, Alexander Land, Nicolas Latte, Tom Levanič, Ernst van der Maaten, Marieke van der Maaten-Theunissen, Elisabet Martínez-Sancho, Annette Menzel, Martin Mikoláš, Renzo Motta, Lena Muffler, Paola Nola, Momchil Panayotov, Any Mary Petritan, Ion Catalin Petritan, Ionel Popa, Peter Prislan, Catalin-Constantin Roibu, Miloš Rydval, Raul Sánchez-Salguero, Tobias Scharnweber, Branko Stajić, Miroslav Svoboda, Willy Tegel, Marius Teodosiu, Elvin Toromani, Volodymyr Trotsiuk, Daniel-Ond Turcu, Robert Weigel, Martin Wilmking, Christian Zang, Tzvetan Zlatanov, and Valerie Trouet
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Science - Abstract
Here the authors show that extremes in the summer jet stream position over Europe create a beech forest productivity dipole between northwestern and southeastern Europe and can result in regional anomalies in forest carbon uptake and growth.
- Published
- 2022
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3. Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads
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Einat Chetrit, Sabita Sharma, Uri Maayan, Maya Georgia Pelah, Ziv Klausner, Ionel Popa, and Ronen Berkovich
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Polyprotein ,Single-molecule force-spectroscopy ,Correlations ,Nonexponential kinetics ,Energy landscape ,Biology (General) ,QH301-705.5 - Abstract
While performing under mechanical loads in vivo, polyproteins are vitally involved in cellular mechanisms such as regulation of tissue elasticity and mechano-transduction by unfolding their comprising domains and extending them. It is widely thought that the process of sequential unfolding of polyproteins follows an exponential kinetics as the individual unfolding events exhibit identical and identically distributed (iid) Poisson behavior. However, it was shown that under high loads, the sequential unfolding kinetics displays nonexponential kinetics that alludes to aging by a subdiffusion process. Statistical order analysis of this kinetics indicated that the individual unfolding events are not iid, and cannot be defined as a Poisson (memoryless) process. Based on numerical simulations it was argued that this behavior becomes less pronounced with lowering the load, therefore it is to be expected that polyproteins unfolding under lower forces will follow a Poisson behavior. This expectation serves as the motivation of the current study, in which we investigate the effect of force lowering on the unfolding kinetics of Poly-L8 under varying loads, specifically high (150, 100 pN) and moderate-low (45, 30, 20 pN) forces. We found that a hierarchy among the unfolding events still exists even under low loads, again resulting in nonexponential behavior. We observe that analyzing the dwell-time distributions with stretched-exponentials and power laws give rise to different phenomenological trends. Using statistical order analysis, we demonstrated that even under the lowest load, the sequential unfolding cannot be considered as iid, in accord with the power law distribution. Additional free energy analysis revealed the contribution of the unfolded segments elasticity that scales with the force on the overall one-dimensional contour of the energy landscape, but more importantly, it discloses the hierarchy within the activation barriers during sequential unfolding that account for the observed nonexponentiality.
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- 2022
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4. Influența poluării industriale din zona Tarnița asupra relației dintre factorii climatici și creșterea radială a arborilor de rășinoase
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Cristian Gheorghe Sidor, Cosmin Cuciurean, Radu Vlad, and Ionel Popa
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poluarea aerului ,dendroecologie ,climatologie ,creșterea radială a arborilor ,Forestry ,SD1-669.5 - Abstract
Creșterea radială a arborilor variază de la un sezon de vegetație la altul, datorită variației factorilor de mediu de la un an la altul. Poluarea aerului poate modifica comportamentul normal al creșterii arborilor atât în ceea ce privește dinamica creșterii, cât și răspunsul la schimbările de mediu. Schimbările climatice și poluarea aerului sunt strâns corelate deși de cele mai multe ori impactul poluării asupra creșterii arborilor și relația dintre climat și creșterea radială a arborilor au fost analizate separat. Acest studiu prezintă rezultatele privind influența poluării industriale asupra relației dintre creșterea arborilor și factorii climatici. Au fost studiate două specii de arbori, molid (Picea abies L.) și brad (Abies alba L.), din zona Tarnița, județul Suceava, zonă intens poluată de activitatea minieră și prelucrarea metalelor neferoase. Suprafețele experimentale au fost amplasate la diferite distanțe față de sursa de poluare pentru a putea surprinde arbori afectați în diferite grade de poluarea industrială locală (intens poluat, moderat poluat și nepoluat). Analiza răspunsului arborilor la variația factorilor climatici a scos în evidență faptul că precipitațiile ridicate din anumite luni pot influența pozitiv creșterile arborilor din zonele poluate. Temperaturile ridicate din sezonul de vegetație pot influența negativ arborii de rășinoase, iar răspunsul este mai puternic în cazul arborilor din zonele afectate de poluare. Perioada în care arborii de rășinoase din zona Tarnița, au răspuns diferit în raport cu gradul de afectare al poluării se suprapune perfect cu perioada în care activitatea minieră din acea zonă se desfășura la un nivel foarte ridicat.
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- 2022
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5. Are There Any Land Use Dynamics in the Upper Bistrița Basin, Eastern Carpathians, Romania, in the Period 1990–2021?
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Valentin Jujea, Valeriu Stoilov-Linu, Mihaela Boboc, Ionel Popa, Alexandru Nedelea, Nicolae Crăciun, and Bogdan-Mihai Negrea
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land cover classification ,land use ,LANDSAT database ,land cover change ,Copernicus portal ,Biology (General) ,QH301-705.5 - Abstract
This paper aims to assess land use and land use change (LULC). For this purpose, supervised mapping on satellite imagery, using the European Space Agency (ESA) SNAP programme from LANDSAT databases, publicly accessible through the European Copernicus portal, was used. At the same time, an analysis of the degree of landscape fragmentation in the study area was carried out, which revealed that, because of the particular fragmentation of small polygons, the best results were obtained via analysis/supervised mapping on satellite images. This method, once validated in the field, reflects the most accurate land use pattern in the analysed area, with wide applications in studies of agriculture, biodiversity, geography, etc. Between 2000 and 2010, significant changes were registered. Artificial surfaces decreased by approximately 400 ha, showing a negative trend in the last period of the interval. Coniferous forests reached their maximum threshold in 2000 (with 114,400 ha) in conjunction with the “Grassland” class, which exceeded 16,700 ha. In 2010, a drastic decrease in “Grassland” was recorded, reaching half of the values of 1990 and 2000, now having only 15,684 ha. Land cover changes were significant when comparing the period before 1989 with 2021. This fact was due to socio-economic changes in society, in large part caused by changes in professions and the way of life of the population.
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- 2023
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6. Caracteristici dendrometrice ale populației de zâmbru de pe versantul nordic al Munților Călimani
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Claudiu-Cosmin Rogojan, Basarab Bârlădeanu, Iosif Filimon, and Ionel Popa
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zâmbru ,distribuția diametrelor ,tipul de vătămare ,parcul național călimani ,Forestry ,SD1-669.5 - Abstract
În curând
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- 2020
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7. Model statistic regional pentru estimarea diametrului de bază al molidului în funcție de diametrul cioatei la înălțimea de referință de 30 cm
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Ionel Popa, Andrei Popa, Arnold Horvath, Istrate Ștețco, and Attila Korpos
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diametrul cioatei ,diametrul de bază ,model statistic ,modelare varianță reziduală ,Forestry ,SD1-669.5 - Abstract
În practica silvică adeseori se impune estimarea diametrului de bază și a volumului arborilor pornind de la diametrul cioatei rămase după extragere. Elaborarea de tabele dendrometrice locale privind derivarea diametrului de bază funcție de diametrul cioatei reprezintă o necesitate pentru administrația silvică. În prezentul studiu s-a calibrat un model regresiv local, de tip parabolic cu modelarea varianței reziduale, pentru obținerea diametrului de bază la molid funcție de diametrul cioate cu înălțimea de 30 cm, reprezentativ pentru fondul forestier administrat de Ocolul silvic de regim Gheorgheni. Setul de date utilizat pentru estimarea parametrilor modelului statistic este format din 4050 de arbori din 111 arborete, cu caracteristici biometrice variate. Modelul statistic propus și volumele unitare diferențiate pe clase de producție permite o evaluarea mai corectă a pagubelor provenite din tăieri ilegale, având o fiabilitate ridicată în condițiile fondului forestier administrat de OSR Gheorgheni.
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- 2021
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8. The Response of Beech (Fagus sylvatica L.) Populations to Climate in the Easternmost Sites of Its European Distribution
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Cătălin-Constantin Roibu, Ciprian Palaghianu, Viorica Nagavciuc, Monica Ionita, Victor Sfecla, Andrei Mursa, Alan Crivellaro, Marian-Ionut Stirbu, Mihai-Gabriel Cotos, Andrei Popa, Irina Sfecla, and Ionel Popa
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marginal beech population ,vapor pressure deficit ,dendrochronology ,tree ring ,growth ,Botany ,QK1-989 - Abstract
In the context of forecasted climate change scenarios, the growth of forest tree species at their distribution margin is crucial to adapt current forest management strategies. Analyses of beech (Fagus sylvatica L.) growth have shown high plasticity, but easternmost beech populations have been rarely studied. To describe the response of the marginal beech population to the climate in the far east sites of its distribution, we first compiled new tree ring width chronologies. Then we analyzed climate–growth relationships for three marginal beech populations in the Republic of Moldova. We observed a relatively high growth rate in the marginal populations compared to core distribution sites. Our analyses further revealed a distinct and significant response of beech growth to all climatic variables, assessing for the first time the relationship between growth and vapor pressure deficit (VPD) which described how plant growth responds to drought. These results highlight that accumulated water deficit is an essential limiting factor of beech growth in this region. In conclusion, beech growth in the easternmost marginal population is drought-limited, and the sensitivity to VPD will need to be considered in future studies to update the forest management of other economic and ecologically important species.
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- 2022
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9. Chemical unfolding of protein domains induces shape change in programmed protein hydrogels
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Luai R. Khoury and Ionel Popa
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Science - Abstract
Tailoring and programing the behavior of protein biomaterials is complex. Here, the authors report on the use of polyelectrolytes for controlling the stiffness to allow programing of protein hydrogels and generate reversible shape changes via folding and unfolding reactions.
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- 2019
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10. Do Different Tree-Ring Proxies Contain Different Temperature Signals? A Case Study of Norway Spruce (Picea abies (L.) Karst) in the Eastern Carpathians
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Andrei Popa, Ionel Popa, Cătălin-Constantin Roibu, and Ovidiu Nicolae Badea
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climate–growth relationship ,climate signal ,tree-ring width ,basal area increment ,blue intensity ,daily climatic data ,Botany ,QK1-989 - Abstract
One of the most important proxy archives for past climate variation is tree rings. Tree-ring parameters offer valuable knowledge regarding how trees respond and adapt to environmental changes. Trees encode all environmental changes in different tree-ring parameters. In this study, we analyzed how air temperature is encoded in different Norway spruce tree-ring proxies along an altitude gradient in an intramountain valley of the Carpathians. The study area, in the Gheorgheni region, Romania (Eastern Carpathians), has a mountain climate with a frequent temperature inversion in winter. The climate–growth relationship was analyzed for two contrasting altitudes: low elevation, i.e., below 1000 m a.s.l., and high elevation, i.e., above 1500 m a.s.l. Two local weather stations, one in the valley and the other on the upper part of the mountains, provide daily temperatures (Joseni—750 m a.s.l. and Bucin—1282 m a.s.l.). The bootstrap Pearson correlation between cumulative daily temperature data and three tree-ring proxies (tree-ring width—TRW, basal area increment—BAI, and blue intensity—BI) was computed for each series. The results show that elevation modulates the climate response pattern in the case of BI, and remains relatively similar for TRW and BAI. The winter temperature’s positive influence on spruce growth was observed in both TRW and BAI chronologies. Additionally, the BAI chronology highlights a positive relationship with summer temperature. The highest correlation coefficient (r = 0.551, p < 0.05, n = 41) was recorded between BI residual chronology from high elevation series and summer/autumn temperature from the upper-part weather station for a cumulative period of 59 days (the second half of August to the beginning of October). Our results show that, for this intramountain valley of the Eastern Carpathians, different tree-ring proxies capture different climate signals.
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- 2022
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11. Geographical Distribution of Three Forest Invasive Beetle Species in Romania
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Nicolai Olenici, Mihai-Leonard Duduman, Ionel Popa, Gabriela Isaia, and Marius Paraschiv
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Ips duplicatus ,Xylosandrus germanus ,Neoclytus acuminatus ,distribution ,Romania ,Science - Abstract
Ips duplicatus (Sahlberg, 1836), Xylosandrus germanus (Blandford, 1894) and Neoclytus acuminatus (Fabricius, 1775) are invasive species reported in Romania, but their current distribution is poorly known. The research aim was to provide new information on this issue. A survey was conducted over the period 2015–2017 in 82 locations, using flight-interception traps and bottle traps, baited with different attractants. Data obtained in our other unpublished studies were also taken into account. A total of 35,136 I. duplicatus beetles were collected in 30 survey locations. The highest captures were in the log yards of some factories processing logs of Norway spruce (Picea abies (L.) H. Karst.). Considering all known records so far, most of these are in the eastern part of Romania, where an outbreak took place during the years 2005–2014, mainly in spruce stands growing outside their natural range. During the survey, 4259 specimens of X. germanus were collected in 35 locations, but in our other studies the species was found in 13 additional places. It was collected at altitudes of 18–1200 m, and the largest catches were from beech stands, growing at 450–950 m. N. acuminatus was found in only six locations, in the western and southern parts of the country, at low altitudes, in tree stands composed of Fraxinus excelsior L., Quercus spp. and other broadleaf species, as well as in broadleaf log yards. The results suggest that I. duplicatus is established in most parts of the Norway spruce’s range, X. germanus is still spreading in the country, with some areas having quite high populations, while N. acuminatus is present only in the warmest regions of the country.
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- 2022
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12. Agenda forestieră europeană și internațională în timpul Președinției României la Consiliul Uniunii Europene
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Ionel Popa and Iulia Natalia Ivășchescu
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Consiliul Uniunii Europene ,UNFF ,Strategia forestieră ,Forestry ,SD1-669.5 - Abstract
În curând
- Published
- 2019
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13. Work Done by Titin Protein Folding Assists Muscle Contraction
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Jaime Andrés Rivas-Pardo, Edward C. Eckels, Ionel Popa, Pallav Kosuri, Wolfgang A. Linke, and Julio M. Fernández
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Biology (General) ,QH301-705.5 - Abstract
Current theories of muscle contraction propose that the power stroke of a myosin motor is the sole source of mechanical energy driving the sliding filaments of a contracting muscle. These models exclude titin, the largest protein in the human body, which determines the passive elasticity of muscles. Here, we show that stepwise unfolding/folding of titin immunoglobulin (Ig) domains occurs in the elastic I band region of intact myofibrils at physiological sarcomere lengths and forces of 6–8 pN. We use single-molecule techniques to demonstrate that unfolded titin Ig domains undergo a spontaneous stepwise folding contraction at forces below 10 pN, delivering up to 105 zJ of additional contractile energy, which is larger than the mechanical energy delivered by the power stroke of a myosin motor. Thus, it appears inescapable that folding of titin Ig domains is an important, but as yet unrecognized, contributor to the force generated by a contracting muscle.
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- 2016
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14. Xylem Phenology of Fagus sylvatica in Rarău Mountains (Eastern Carpathians, Romania)
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Anca SEMENIUC, Ionel POPA, Adrian I. TIMOFTE, and Dan Marian GUREAN
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Forestry ,SD1-669.5 ,Agriculture (General) ,S1-972 - Abstract
The cambium activity and the tree ring formation of European beech (Fagus sylvatica L.) from the Rarău Mountains was monitored during 2009, 2010 and 2011 in a beech - coniferous stand, representative for Eastern Carpathian mixed forests. Wood microcores were collected weekly from five trees and prepared in order to describe the different phases of wood formation. Four phases of tree ring development were quantified, in number of cells and phase duration: cambial phase, cell enlargement, cell wall thickening and cell maturation. The onset of the cambial activity took place in the first week of May 2009, one week later in 2010 and in the last week of April 2011. The beech tree ring development period varies between 127 days in 2009 and 137 days in 2011.
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- 2014
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15. Dendroclimatic Response Variability of Quercus species in the Romanian Intensive Forest Monitoring Network
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Ionel POPA, Stefan LECA, Adam CRĂCIUNESCU, Cristian SIDOR, and Ovidiu BADEA
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Forestry ,SD1-669.5 ,Agriculture (General) ,S1-972 - Abstract
Oaks are among the most important broad-leaved species in Romanian forests from both an economic and socio-ecological point of view. A significant decline of these species has been observed, which was first evident in various studies and investigations followed by the more results of interdisciplinary research performed in intensive monitoring plots (level II) showing that the decline is climate induced. Thus, it is important to understand the climate change conditions and factors that influence Quercus spp. Typical dendroclimatological investigations were conducted on an intensive forest monitoring network based on four oak species (Q. robur, Q. petraea, Q.cerris, and Q. frainetto) in 7 permanent plots placed in southern Romania. Three patterns of climate-growth relationships were identified and discerned in accordance with the Quercus species. All oak species were found to have a positive correlation with the level of precipitation. In addition, the intensity and level of significance of correlation coefficients differ from one species to another and from one region to another.
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- 2013
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16. Exploring Forces between Individual Colloidal Particles with the Atomic Force Microscope
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Prashant Sinha, Ionel Popa, Marco Finessi, Francisco J.M. Ruiz-Cabello, István Szilágyi, Plinio Maroni, and Michal Borkovec
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Atomic force microscope ,Colloidal probe technique ,Dlvo theory ,Double-layer forces ,Van der waals forces ,Chemistry ,QD1-999 - Abstract
Forces between individual colloidal particles can be measured with the atomic force microscope (AFM), and this technique permits the study of interactions between surfaces across aqueous solutions in great detail. The most relevant forces are described by the Derjaguin, Landau, Verwey, and Overbeek (DLVO) theory, and they include electrostatic double-layer and van der Waals forces. In symmetric systems, the electrostatic forces are repulsive and depend strongly on the type and concentration of the salts present, while van der Waals forces are always attractive. In asymmetric systems, the electrostatic force can become attractive as well, even when involving neutral surfaces, while in rare situations van der Waals forces can become repulsive too. The enormous sensitivity of the double layer forces on additives present is illustrated with oppositely charged polyelectrolytes, which may induce attractions or repulsions depending on their concentrations.
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- 2012
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17. Adsorption and Self-Organization of Dendrimers at Water–Solid Interfaces
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Ionel Popa, Rémi Longtin, Plinio Maroni, Georg Papastavrou, and Michal Borkovec
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Adsorption ,Atomic force microscopy ,Dendrimer ,Reflectivity ,Water-silica interface ,Chemistry ,QD1-999 - Abstract
Adsorption of poly(amido amine) (PAMAM) dendrimers at water–silica interfaces and the resulting self-organization on this type of substrate is discussed. Investigations with optical reflectivity and atomic force microscopy (AFM) reveal that dendrimers form monolayers of low coverage on such surfaces with liquid-like structure. The nearest neighbor separation distance in these layers is dictated by screened Coulomb repulsion forces between the adsorbing dendrimers. This effect rationalizes the strong increase of the adsorbed amount with the ionic strength and pH. These layers are stable for high dendrimer generations, while they can become unstable for lower generations.
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- 2009
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18. Using Magnets and Flexible 3D-Printed Structures to Illustrate Protein (Un)folding
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Ionel Popa and Florin Saitis
- Abstract
Proteins are "magical" workers inside our body, as they accomplish most of the cellular functions. Here we report on a novel approach to teach protein folding and unfolding, using magnets and flexible 3D-printed protein structures. To illustrate this physical process, we used colored circular magnets designed for whiteboards, connected through paper clips. Several protein structures were then 3D-printed, using both standard and flexible materials. Protein unfolding under force was then investigated by adding slotted weights to a setup consisting of three experiments: a simple spring, a spring in series with a sealed syringe (representing a dashpot), and a spring in series with a printed protein structure. All of the experiments shown here were done as part of the event, organized by the University of Wisconsin--Milwaukee. The approach presented here complements the use of other techniques to learn about protein folding and constitutes a novel way to explain how mechanical unfolding "in vivo" relates to a gain-of-function.
- Published
- 2022
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19. The first tree-ring reconstrruction of streamflow variability over the last ∼250 years in the Lower Danube
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Viorica, Nagavciuc, Cătălin-Constantin, Roibu, Andrei, Mursa, Marian-Ionuț, Știrbu, Ionel, Popa, and Monica, Ionita
- Published
- 2023
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20. Special Issue: Emergency Medicine: Clinical Advances and Challenges in Diagnosis and Treatment
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Mederle, Ovidiu Alexandru, primary, Ionel, Popa Daian, additional, and Carmen, Williams Gabriela, additional
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- 2024
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21. Modeling and Simulations of Multicomponent Hydrogels for Biomedical Applications
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Ionel Popa
- Abstract
Modeling and simulations of multicomponent hydrogels require a multiscale approach and improvements in resolution and accuracy come at the expense of computational time. In this chapter, a review is provided on the main classes of multicomponent hydrogels from the perspective of macroscopic and nanoscopic modeling approaches. First, modeling of biomaterials on different scales is discussed. Then the most common macroscopic continuum models and nanoscopic coarse-grained models are analyzed in detail, with specific examples from approaches based on polymer–polymer, polymer–protein, polymer–inclusion and polymer–void double networks. Finally, scaling approaches are briefly discussed.
- Published
- 2023
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22. The first tree-ring reconstruction of streamflow variability over the last ~250 years in the Lower Danube
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Monica Ionita-Scholz, Viorica Nagavciuc, Catalin Roibu, Andrei Mursa, Marian-Ionut Stirbu, and Ionel Popa
- Abstract
Paleoclimate reconstructions are increasingly used to characterize climate variability and change prior to the instrumental record, in order to improve our estimates of climate extremes and to provide a baseline for climate change projections. Most of these reconstructions are focused on temperature, precipitation, and/or drought indices and, to a lesser extent, reconstruct streamflow variability. In this study, the first regional tree-ring width chronology (i.e. Quercus sp.), from the Caraorman forest (Danube Delta, Romania), was used to reconstruct the last ~250 years of annual (from November previous year to July of the current year) streamflow of the Lower Danube River. The obtained results indicate a stable and significant correlation between the tree-ring width index from the Caraorman forest and the Danube streamflow at the Ceatal Izmail hydrologic station situated in the southeastern part of Europe. Interannual streamflow variation for the analyzed period indicates 14 extremely high flow years, with streamflow greater than 8780 m3/s (1770, 1771, 1799, 1836, 1838, 1839, 1871, 1876, 1877, 1879, 1940, 1941, 1997 and 2010) and 14 extremely low flow years, with streamflow lower than 5300 m3/s (1741, 1745, 1750, 1753, 1773, 1794, 1812, 1832, 1843, 1882, 1899, 1921, 1964 and 1994). Periods characterized by pluvials in the lower Danube Delta are associated with a low-pressure system centered over Europe, positive sea surface temperature (SST) anomalies over the Atlantic Ocean, and negative SST anomalies over the Baltic, North, and Mediterranean Seas. These large-scale conditions favor the advection of moist air from the Mediterranean and the Black Sea towards the southeastern part of Romania, which in turn leads to high precipitation rates over this region. Opposite to this, low streamflow years are associated with a high-pressure system centered over Europe, characterized by a northward shift of the storm tracks and negative SST anomalies over the Atlantic Ocean, and positive SST anomalies over the Baltic, North, and Mediterranean Seas. Based on our results, we argue that the reconstruction of river streamflow data based on the tree-ring width has important scientific and practical implications for a better understanding of the streamflow variation of the past, necessary for water resource management and environmental-hydrological protection.
- Published
- 2023
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23. Early warning signals of Norway spruce decline in Eastern Europe
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Andrei Popa, Ernst van der Maaten, Ionel Popa, and Marieke van der Maaten-Theunissen
- Abstract
Climate change is affecting forest ecosystems all around the globe, in particular through warming as well as increases in drought frequency and intensity. Possible impacts range from effects on the provisioning of ecosystem services such as carbon sequestration to tree mortality.Norway spruce (Picea abies (L.) H. Karst.) is one of the most important coniferous species at the European level. In the actual context of climate change, especially with the increase in drought severity and frequency Norway spruce is likely to be at risk. Severe droughts during the vegetation period may, for example, negatively affect the resilience of Norway spruce and its’ ability to resist bark-beetle attacks. In recent extremely dry years in Central Europe, this has been observed through the large dieback of Norway spruce forests. In Eastern Europe, however, no extensive Norway spruce decline has been reported so far, posing the question how these forests will develop in the future?To address this question, we present and analyze a tree-ring network consisting of 155 Norway spruce chronologies from Eastern Europe (Romania). As sites were selected along elevational transects in the Carpathians, our network allows to assess future impacts of climate change using a space for time substitution. The focus of our analysis is on the early warning signals of climate-change induced stress: negative trends in basal area increment and increased sensitivity of tree growth, assessed over the statistics first-order autocorrelation and standard deviation. A clear decrease in basal area increment was observed over the last two decades in the northern part of the Eastern Carpathians, which was more pronounced for younger stands and at lower elevations. At the same time, the first-order autocorrelation showed a sharp decrease at lower elevations. Our results highlighted increasing stress conditions of Norway spruce-based forests in Eastern Europe. In the current climatic scenarios, we may expect high mortality and forest diebacks also in the eastern part of Europe. Mitigation solutions are required as soon as possible.
- Published
- 2023
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24. What Is the Force-per-Molecule Inside a Biomaterial Having Randomly Oriented Units?
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Joel Nowitzke and Ionel Popa
- Subjects
Proteins ,Biocompatible Materials ,Hydrogels ,General Materials Science ,Physical and Theoretical Chemistry ,Mechanical Phenomena - Abstract
Both synthetic and natural protein-based materials are made of randomly oriented cross-linked molecules. Here we introduce a coarse-grained approach to estimate the average force-per-molecule for materials made from globular proteins. Our approach has three steps: placement of molecules inside a unit volume, cross-linking, and trimming to remove the protein domains that do not participate to the force response. Following this procedure, we estimate the number of active domains per cross-section area, that allows for a direct calculation of the force-per-domain. Among the variables considered, we found that concentration was the most sensitive parameter. We then synthesized protein hydrogels made from BSA and polyprotein L and measured the stresses that these materials can withstand. We found that forces-per-molecules of up to 17 pN per domain can be obtained experimentally using protein hydrogels. Our approach represents an important step toward understanding the scaling of tension in biomaterials.
- Published
- 2022
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25. Kinetic Method of Producing Pores Inside Protein-Based Biomaterials without Compromising Their Structural Integrity
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Marina Slawinski, Luai R. Khoury, Sabita Sharma, Joel Nowitzke, Jennifer H. Gutzman, and Ionel Popa
- Subjects
Biomaterials ,Alginates ,Biomedical Engineering ,Biocompatible Materials ,Hydrogels ,Serum Albumin, Bovine ,Porosity - Abstract
Hydrogels made from globular proteins cross-linked covalently into a stable network are becoming an important type of biomaterial, with applications in artificial tissue design and cell culture scaffolds, and represent a promising system to study the mechanical and biochemical unfolding of proteins in crowded environments. Due to the small size of the globular protein domains, typically 2-5 nm, the primary network allows for a limited transfer of protein molecules and prevents the passing of particles and aggregates with dimensions over 100 nm. Here, we demonstrate a method to produce protein materials with micrometer-sized pores and increased permeability. Our approach relies on forming two competing networks: a covalent network made from cross-linked bovine serum albumin (BSA) proteins via a light-activated reaction and a physical network triggered by the aggregation of a polysaccharide, alginate, in the presence of Ca
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- 2022
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26. Mechanical Unfolding Response of Proteins
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Ionel Popa and Ronen Berkovich
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- 2023
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27. A tree ring-based hydroclimate reconstruction for eastern Europe reveals large-scale teleconnection patterns
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Cătălin-Constantin Roibu, Viorica Nagavciuc, Monica Ionita, Ionel Popa, Sergiu-Andrei Horodnic, Andrei Mursa, Ulf Büntgen, Nagavciuc, V [0000-0003-1111-9616], and Apollo - University of Cambridge Repository
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Atmospheric Science ,Beech ,Climate reconstructions ,Dendroclimatology ,Tree rings ,Drought extremes ,Teleconnection patterns ,Eastern Europe - Abstract
Funder: alfred wegener institute helmholtz centre for polar and marine research; doi: http://dx.doi.org/10.13039/501100003207, Funder: Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung (AWI) (1014), We present a new beech (Fagus sylvatica L.) tree-ring width composite chronology from five natural low-elevation forests in eastern Romania, which represent the species’ continental distribution limit. Our regional beech chronology reflects April–June hydroclimate variability in form of the Standardized Precipitation Evapotranspiration Index over large parts of Romania, Ukraine, and the Republic of Moldova, for which high-resolution paleoclimatic evidence is broadly missing. Most of the reconstructed hydroclimatic extremes back to 1768 CE are confirmed by documentary evidences, and a robust association is found with large-scale atmospheric circulation patterns in the Northern Hemisphere and sea surface temperatures over the North Atlantic. Reconstructed pluvials coincide with a high-pressure system over the North Atlantic Ocean and north-western Europe, and with a low-pressure system over south-western, central and eastern Europe, whereas historical droughts coincide with a high-pressure system over Europe and a low-pressure system over the central part of the Atlantic Ocean. Our study demonstrates the potential to produce well-replicated, multi-centennial beech chronologies for eastern Europe to reconstruct regional hydroclimate variation and better understand the causes and consequences of large-scale teleconnection patterns.
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- 2022
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28. Mechanical regulation of talin through binding and history-dependent unfolding
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Narayan Dahal, Sabita Sharma, Binh Phan, Annie Eis, and Ionel Popa
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Multidisciplinary - Abstract
Talin is a force-sensing multidomain protein and a major player in cellular mechanotransduction. Here, we use single-molecule magnetic tweezers to investigate the mechanical response of the R8 rod domain of talin. We find that under various force cycles, the R8 domain of talin can display a memory-dependent behavior: At the same low force (
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- 2022
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29. Variability of Needle Density of Dwarf Mountain Pine (Pinus mugo) in the Eastern Carpathians
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Andrei I. Popa and Ionel Popa
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biology ,Pinus mugo ,Botany ,Forestry ,Mountain pine ,biology.organism_classification ,Agronomy and Crop Science ,Food Science - Published
- 2020
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30. Does protein unfolding play a functional role in vivo ?
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Ionel Popa, Smrithika Subramani, and Sabita Sharma
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Models, Molecular ,0301 basic medicine ,Functional role ,Protein Folding ,Mechanotransduction, Cellular ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,In vivo ,medicine ,Muscular dystrophy ,Molecular Biology ,Protein Unfolding ,Chemistry ,Force spectroscopy ,Proteins ,Energy landscape ,Cell Biology ,medicine.disease ,Elasticity ,Force vector ,Cellular mechanotransduction ,030104 developmental biology ,030220 oncology & carcinogenesis ,Unfolded protein response ,Biophysics ,Thermodynamics ,Stress, Mechanical ,Protein Binding - Abstract
Unfolding and refolding of multidomain proteins under force have yet to be recognized as a major mechanism of function for proteins in vivo. In this review, we discuss the inherent properties of multidomain proteins under a force vector from a structural and functional perspective. We then characterize three main systems where multidomain proteins could play major roles through mechanical unfolding: muscular contraction, cellular mechanotransduction, and bacterial adhesion. We analyze how key multidomain proteins for each system can produce a gain-of-function from the perspective of a fine-tuned quantized response, a molecular battery, delivery of mechanical work through refolding, elasticity tuning, protection and exposure of cryptic sites, and binding-induced mechanical changes. Understanding how mechanical unfolding and refolding affect function will have important implications in designing mechano-active drugs against conditions such as muscular dystrophy, cancer, or novel antibiotics.
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- 2020
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31. Caracteristici dendrometrice ale populației de zâmbru de pe versantul nordic al Munților Călimani
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Iosif Filimon, Claudiu-Cosmin Rogojan, Basarab Bârlădeanu, and Ionel Popa
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Mean diameter ,education.field_of_study ,Open wounds ,biology ,zâmbru ,tipul de vătămare ,Population ,Biodiversity ,Forestry ,General Medicine ,distribuția diametrelor ,Woodpecker ,biology.organism_classification ,Geography ,Maximum diameter ,parcul național călimani ,lcsh:SD1-669.5 ,Stone pine ,lcsh:Forestry ,education - Abstract
In this study we present biometric and qualitative information concerning the stone pine population from northern slope of Calimani Mts. based on full stone pine trees inventory from 90 ha. Diameter distribution of stone pine trees follow a typical distribution for even-age stands, with left side asymmetry and a mean diameter of 37.2±17.1 cm. The maximum diameter found in our inventory is 156 cm, been the larger reported for Eastern Carpathians. Regarding the type of damages observed, most of them are represented by closed or open wounds (14.1%). According with the location of the damages over 85% of them are at the base of the stem. Woodpecker holes, as a high biodiversity indicator, were found at 79 trees (2.7%). In general, our inventory shows that the stone pine population from the northern slope of Calimani Mts. has a very good health status, ensuring the premises for a sustainable dynamic of this population.
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- 2020
32. Epidemiological derivation of flux-based critical levels for visible ozone injury in European forests
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Adriano Conte, Diana Pitar, Pierre Sicard, Ionel Popa, Yasutomo Hoshika, Laurence Dalstein-Richier, Elena Paoletti, Elisa Carrari, Alessandra De Marco, Silvano Fares, Ovidiu Badea, Sicard, P., De Marco, A., Carrari, E., Dalstein-Richier, L., Hoshika, Y., Badea, O., Pitar, D., Fares, S., Conte, A., Popa, I., and Paoletti, E.
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0106 biological sciences ,Ozone ,Epidemiology ,Crown (botany) ,Forestry ,04 agricultural and veterinary sciences ,Vegetation ,01 natural sciences ,Critical levels ,chemistry.chemical_compound ,Flux (metallurgy) ,Agronomy ,chemistry ,Soil water ,040103 agronomy & agriculture ,POD ,0401 agriculture, forestry, and fisheries ,Environmental science ,Forest protection ,Visible injury ,Tree species ,010606 plant biology & botany - Abstract
The European MOTTLES project set-up a new-generation network for ozone (O3) monitoring in 17 plots in France, Italy and Romania. These monitoring stations allowed: (1) estimating the accumulated exposure AOT40 and stomatal O3 fluxes (PODY) with an hourly threshold of uptake (Y) to represent the detoxification capacity of trees (POD1, with Y = 1nmolO3m−2s−1per leaf area); and (2) collecting data of forest-response indicators, i.e. crown defoliation and visible foliar O3-like injury over the time period 2017–2019. The soil water content was the most important parameter affecting crown defoliation and was a key factor affecting the severity of visible foliar O3-like injury on the dominant tree species in a plot. The soil water content is thus an essential parameter in the PODY estimation, particularly for water-limited environments. An assessment based on stomatal flux-based standard and on real plant symptoms is more appropriated than the exposure-based method for protecting vegetation. From flux-effect relationships, we derived flux-based critical levels (CLef) for forest protection against visible foliar O3-like injury. We recommend CLef of 5 and 12mmolm−2 POD1 for broadleaved species and conifers, respectively. Before using PODY as legislative standard in Europe, we recommend using the CLec for ≥ 25% of crown defoliation in a plot: 17,000 and 19,000nmolmol−1 h AOT40 for conifers and broadleaved species, respectively.
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- 2020
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33. Climate signals in carbon and oxygen isotope ratios of Pinus cembra tree‐ring cellulose from the Călimani Mountains, Romania
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Zoltán Kern, Jan Esper, Ionel Popa, Oliver Konter, Monica Ionita, Claudia Hartl, and Viorica Nagavciuc
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Atmospheric Science ,010504 meteorology & atmospheric sciences ,δ13C ,δ18O ,Pinus cembra ,15. Life on land ,010502 geochemistry & geophysics ,01 natural sciences ,Isotopes of oxygen ,food.food ,Mediterranean sea ,food ,13. Climate action ,Climatology ,Dendrochronology ,Environmental science ,Precipitation ,Physical geography ,Pressure system ,0105 earth and related environmental sciences - Abstract
We analyze annually resolved tree-ring stable carbon (I´13C) and oxygen (I´18O) isotopic chronologies from Swiss stone pine (Pinus cembra L.) in Romania. The chronologies cover the period between 1876 and 2012 and integrate data from four individual trees from the Calimani Mts in the eastern Carpathians where climatic records are scarce and starts only from 1961. Calibration trials show that the I´13C values correlate with local April-May relative humidity and with regional to larger scale (European) summer precipitation. I´18O correlates significantly with local relative humidity, cloud cover, maximum temperature, as well as European scale drought conditions. In all cases, the climate effects on I´13C values are weaker than those recorded in the I´18O data, with the latter revealing a tendency towards higher (lower) values of I´18O during extremely dry (wet) years. The most striking signal, however, is the strong link between the interannual I´18O variability recorded in the Calimani Mts and large-scale circulation patterns associated with North Atlantic and Mediteraneean Sea sea surface temperatures. High (low) values of I´18O occur in association with a high (low) pressure system over the central and eastern part of Europe and with a significantly warmer (colder) Mediterranean Sea surface temperature. These results demonstrate the possibility of using tree ring oxygen isotopes from the eastern Carpathians to reconstruct regional drought conditions in eastern Europe on long-term time scales and larger scale circulation dynamics over the pre-instrumental periods.
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- 2020
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34. Binding-Induced Stabilization Measured on the Same Molecular Protein Substrate Using Single-Molecule Magnetic Tweezers and Heterocovalent Attachments
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Narayan Dahal, Ionel Popa, Annie Eis, and Joel Nowitzke
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Protein Folding ,Magnetic tweezers ,Ligands ,010402 general chemistry ,Mechanotransduction, Cellular ,01 natural sciences ,0103 physical sciences ,Materials Chemistry ,Nanotechnology ,Molecule ,Physical and Theoretical Chemistry ,Mechanotransduction ,Mechanical Phenomena ,010304 chemical physics ,biology ,Chemistry ,Magnetic Phenomena ,Force spectroscopy ,Adhesion ,0104 chemical sciences ,Surfaces, Coatings and Films ,Dissociation constant ,Protein L ,Biophysics ,biology.protein ,Protein folding - Abstract
Binding-induced mechanical stabilization plays key roles in proteins involved in muscle contraction, cellular mechanotransduction, or bacterial adhesion. Because of the vector nature of force, single-molecule force spectroscopy techniques are ideal for measuring the mechanical unfolding of proteins. However, current approaches are still prone to calibration errors between experiments and geometrical variations between individual tethers. Here, we introduce a single-molecule assay based on magnetic tweezers and heterocovalent attachment, which can measure the binding of the substrate-ligand using the same protein molecule. We demonstrate this approach with protein L, a model bacterial protein which has two binding interfaces for the same region of kappa-light chain antibody ligands. Engineered molecules with eight identical domains of protein L between a HaloTag and a SpyTag were exposed to repeated unfolding-refolding cycles at forces up to 100 pN for several hours at a time. The unfolding behavior of the same protein was measured in solution buffers with different concentrations of antibody ligands. With increasing antibody concentration, an increasing number of protein L domains became more stable, indicative of ligand binding and mechanical reinforcement. Interestingly, the dissociation constant of the mechanically reinforced states coincides with that measured for the low-avidity binding interface of protein L, suggesting a physiological role for the second binding interface. The molecular approach presented here opens the road to a new type of binding experiments, where the same molecule can be exposed to different solvents or ligands.
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- 2020
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35. Tree-ring width as an indicator for hydroclimate variability in the Lower Danube region
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Viorica Nagavciuc, Cătălin-Constantin Roibu, Andrei Mursa, Marian Ionuț Știrbu, Ionel Popa, and Monica Ionita
- Abstract
Paleoclimate reconstructions are increasingly used to characterize climate variability and change prior to the instrumental record, in order to improve our estimates of climate extremes and to provide a baseline for climate change projections. Most of these reconstructions are focused on temperature, precipitation, and/or drought indices, and to a lesser extent to reconstruct streamflow variability. In this study, a regional tree-ring width chronology (i.e. Quercus petraea), from Caraorman forest (Danube Delta, Romania), was used to reconstruct the last ~250 years of annual (from November previous year to July current year) streamflow of the Lower Danube River. The obtained results indicate a stable and significant correlation between the measured tree-ring width from Caraorman forest and Danube streamflow at Ceatal Izmail hydrologic station situated in the south-eastern part of Europe. The statistical parameters of the reconstruction model confirm that our model is stable and robust, explaining 44.9 % of the variance of the Lower Danube streamflow over the period 1920 – 2013. Interannual streamflow variation for the analyzed period indicates 11 extremely high flow years, with streamflow greater than 9200 m3/s (1170, 1771, 1799, 1836, 1838, 1839, 1871, 1876, 1877, 1940, and 2010) and 11 extremely low flow years, with streamflow lower than 5200 m3/s (1750, 1753, 1753, 1773, 1794, 1832, 1843, 1882, 1921, 1964, and 1994). The influence of the large-scale atmospheric circulation on the TRW variability was analyzed using the composite maps of the geopotential height at 500 mb (Z500) and sea surface temperature (SST). High TRW values (e.g. high streamflow periods) from the Caraorman forest are associated with a low-pressure system centered over Europe and positive SST anomalies over the Atlantic Ocean and negative SST anomalies over the Baltic, North, and Mediterranean Seas. These large-scale conditions favor the advection of moist air from the Mediterranean and the Black Sea towards the south-eastern part of Romania, which in turn leads to high precipitation rates over this region. Opposite to this, low TRW values (e.g. low streamflow periods) are associated with a high-pressure system centered over Europe, a northward shift of the storm tracks and negative SST anomalies over the Atlantic Ocean, and positive SST anomalies over the Baltic, North, and Mediterranean Seas. Based on our results we argue that the reconstruction of river streamflow data based on the tree-ring width has important scientific and practical implications for a better understanding of the streamflow variation of the past, necessary for water resource management, and environmental-hydrological protection.
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- 2022
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36. Economic and Life Cycle Analysis of Passive and Active Monitoring of Ozone for Forest Protection
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Elena Paoletti, Pierre Sicard, Alessandra De Marco, Stefan Leca, Giacomo Pallante, Elisa Carrari, Alessandro Materassi, Ovidiu Badea, Andrea Laschi, Yasutomo Hoshika, Laurence Dalstein-Richier, Silvano Fares, Enrico Marchi, Ionel Popa, Diana Pitar, Carrari, E., De Marco, A., Laschi, A., Badea, O., Dalstein-Richier, L., Fares, S., Leca, S., Marchi, E., Sicard, P., Popa, I., Hoshika, Y., Materassi, A., Pallante, G., Pitar, D., Paoletti, E., Carrari Elisa, De Marco Alessandra, Laschi Andrea, Badea Ovidiu, Dalstein-Richier Laurence, Fares Silvano, Leca Stefan, Marchi Enrico, Sicard Pierre, Popa Ionel, Hoshika Yasutomo, Materassi Alessandro, Pallante Giacomo, Pitar Diana, and Paoletti Elena
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tropospheric ozone detection ,forests protection ,LCA analysis ,sustainability ,CO2 emissions ,LCA analysi ,Environmental technology. Sanitary engineering ,chemistry.chemical_compound ,Environmental protection ,Economic cost ,Tropospheric ozone ,Forest protection ,Ecology, Evolution, Behavior and Systematics ,TD1-1066 ,General Environmental Science ,Renewable Energy, Sustainability and the Environment ,Global warming ,Passive monitoring ,emissions ,Evergreen ,CO ,Deciduous ,chemistry ,Sustainability ,Environmental science - Abstract
At forest sites, phytotoxic tropospheric ozone (O3) can be monitored with continuously operating, active monitors (AM) or passive, cumulative samplers (PM). For the first time, we present evidence that the sustainability of active monitoring is better than that of passive sensors, as the environmental, economic, and social costs are usually lower in the former than in the latter. By using data collected in the field, environmental, social, and economic costs were analyzed. The study considered monitoring sites at three distances from a control station in Italy (30, 400, and 750 km), two forest types (deciduous and Mediterranean evergreen), and three time windows (5, 10, and 20 years of monitoring). AM resulted in more convenience than PM, even after 5 years, in terms of O3 depletion, global warming, and photochemical O3 creation potential, suggesting that passive monitoring of ozone is not environmentally sustainable, especially for long time periods. AM led to savings ranging from a minimum of EUR 9650 in 5 years up to EUR 94,796 in 20 years in evergreen forests. The resulting social cost of PM was always higher than that of AM. The present evaluation will help in the decision process for the set-up of long-term forest monitoring sites dedicated to the protection of forests from O3.
- Published
- 2021
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37. Intervalidation of Dendrochronology and 14C Dating on a 700-yr Tree-Ring Sequence Originating from the Eastern Carpathians
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Maria Ilie, Cristian Mănăilescu, T. Sava, Andrei Robu, Aurelia Meghea, Ionel Popa, Gabriela Sava, and Boglárka Tóth
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Archeology ,Calibration (statistics) ,Calibration curve ,Pinus cembra ,food.food ,law.invention ,Sequence (geology) ,food ,law ,Dendrochronology ,General Earth and Planetary Sciences ,Radiocarbon dating ,Physical geography ,Little ice age ,Geology - Abstract
We present a comparative study on a 700-yr sequence of dendrochronologically ordered tree-rings of Pinus cembra originating from Eastern Carpathians for the period AD 1009–1709. This period covers the solar minima of the Little Ice Age. The aim of this study was to assess the accuracy of our radiocarbon (14C) determinations interpreted on the IntCal13 calibration data and to observe any apparent offsets. The 14C measurements on single and double tree-rings were “wiggle-matched” to secure the dendrochronology cross-matching of all the Pinus cembra wood pieces. The results showed a very good agreement between the age datasets for four out of five wood trunks. However, for one of them a new cross-matching was performed after a quality assurance test, establishing an earlier 48-yr position, recommended by wiggle-matching Bayesian statistics and dendrochronological analysis. Following this adjustment, the quantification of the 14C level variability with respect to the IntCal13 calibration curve was obtained by calculating Δ14C for all tree-ring samples. As a final conclusion, an insignificant 14C concentration offset of –0.63 ± 3.76‰ was found for the Romanian samples.
- Published
- 2019
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38. A general method to quantify ligand-driven oligomerization from fluorescence-based images
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Graeme Milligan, Michael R. Stoneman, Richard J. Ward, Ionel Popa, Valerica Raicu, John D. Pediani, Annie Eis, Dammar N. Badu, and Gabriel Biener
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Agonist ,0303 health sciences ,General method ,biology ,medicine.drug_class ,Ligand ,Cell Biology ,Mass spectrometry ,Biochemistry ,Fluorescence ,03 medical and health sciences ,chemistry.chemical_compound ,Monomer ,chemistry ,Biophysics ,medicine ,biology.protein ,Secretin receptor ,Epidermal growth factor receptor ,Molecular Biology ,030304 developmental biology ,Biotechnology - Abstract
Here, we introduce fluorescence intensity fluctuation spectrometry for determining the identity, abundance and stability of protein oligomers. This approach was tested on monomers and oligomers of known sizes and was used to uncover the oligomeric states of the epidermal growth factor receptor and the secretin receptor in the presence and absence of their agonist ligands. This method is fast and is scalable for high-throughput screening of drugs targeting protein–protein interactions.
- Published
- 2019
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39. OVERVIEW OF TROPOSPHERIC NO2 USING THE OZONE MONITORING OBSERVATIONS INSTRUMENT AND HUMAN PERCEPTION ABOUT AIR QUALITY FOR THE MOST POLLUTING COUNTRIES ACCROSS THE WORLD
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Ionel Popa, Maxim Arseni, Gabriel Murariu, Lucian Georgescu, Adrian Roșu, Daniel-Eduard Constantin, Bogdan Rosu, and Mirela Voiculescu
- Subjects
Troposphere ,chemistry.chemical_compound ,Ozone ,Meteorology ,chemistry ,Perception ,media_common.quotation_subject ,General Earth and Planetary Sciences ,Environmental science ,Air quality index ,General Environmental Science ,media_common - Published
- 2019
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40. Impact of Industrial Pollution on Radial Growth of Conifers in a Former Mining Area in the Eastern Carpathians (Northern Romania)
- Author
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Cristian Gheorghe Sidor, Radu Vlad, Ovidiu Badea, Ionel Popa, Ecaterina Nicoleta Apostol, and Anca Semeniuc
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Pollution ,increment cores ,010504 meteorology & atmospheric sciences ,media_common.quotation_subject ,air pollution ,Air pollution ,010501 environmental sciences ,medicine.disease_cause ,Vitality ,01 natural sciences ,medicine ,QK900-989 ,silver fir ,Plant ecology ,0105 earth and related environmental sciences ,media_common ,geography ,geography.geographical_feature_category ,radial growth series ,biology ,Forestry ,Picea abies ,biology.organism_classification ,Karst ,Abies alba ,Norway spruce ,Period (geology) ,Environmental science ,Tree health - Abstract
The research aims to evaluate the impact of local industrial pollution on radial growth in affected Norway spruce (Picea abies (L.) Karst.) and silver fir (Abies alba Mill.) stands in the Tarnița study area in Suceava. For northeastern Romania, the Tarnița mining operation constituted a hotspot of industrial pollution. The primary processing of non-ferrous ores containing heavy metals in the form of complex sulfides was the main cause of pollution in the Tarnița region from 1968 to 1990. Air pollution of Tarnița induced substantial tree growth reduction from 1978 to 1990, causing a decline in tree health and vitality. Growth decline in stands located over 6 km from the pollution source was weaker or absent. Spruce trees were much less affected by the phenomenon of local pollution than fir trees. We analyzed the dynamics of resilience indices and average radial growth indices and found that the period in which the trees suffered the most from local pollution was between 1978 and 1984. Growth recovery of the intensively polluted stand was observed after the 1990s when the environmental condition improved because of a significant reduction in air pollution.
- Published
- 2021
41. Broad-Leaved Tree Growth Modulated by Industrial Air Pollution in the Northern Romania (Baia Mare Region)
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Cristian Gheorghe Sidor, Cosmin Ilie Cuciurean, Ionel Popa, Ștefan Leca, Radu Vlad, and Ovidiu Badea
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air pollution ,heavy metals ,forest ecosystems ,climate change ,forest decline ,Forestry - Abstract
Atmospheric pollutants over the last century have led to increased negative impacts on the environment, especially on forest ecosystems. In the Baia Mare region of Romania, the influence of pollution on the neighboring forests of the municipality has been reported since 1970, and its negative effects have been reported mainly in the form of reduced tree growth, which implies significant losses of wood biomass. The objective of this study is to analyze the temporal and spatial effect of industrial pollution on the auxological processes of beech trees in this region. Quantification of auxological changes was performed by analyzing the resilience, recovery and resistance indices. The most intense negative effect of local pollution with heavy metal dusts, sulfur and nitrogen oxides, and sulfuric acid vapors, on the auxological processes of beech trees was found in the period 1960–1990, with a maximum in the period 1970–1980, when the mining activity was at its highest intensity. Beech trees responded to the negative effect of pollution by significantly reducing their growth during the period affected by local pollution, and after 1990 they resumed their auxological activity close to normal. In addition, it was noted that the index that best captures the effect of pollution over time is the resilience index. Tree growth resilience, recovery, and resistance assessment and analysis significantly contributes to our understanding of trees response to environment pollution more broadly creating also the base for strategic planning initiatives with valuable insight into the efforts of making the forests more resilient and resistant.
- Published
- 2022
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42. Climate warming induced synchronous growth decline in Norway spruce populations across biogeographical gradients since 2000
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Laura Dobor, Ionel Popa, Ulf Büntgen, Jan Tumajer, Michal Bosela, Ladislav Kulla, Vladimír Šebeň, Peter Marčiš, Denisa Sedmáková, Emil Cienciala, Petr Štěpánek, Róbert Sedmák, and Roman Sitko
- Subjects
Environmental Engineering ,010504 meteorology & atmospheric sciences ,Climate Change ,Population ,Climate change ,010501 environmental sciences ,01 natural sciences ,Trees ,Dendrochronology ,Environmental Chemistry ,Humans ,Europe, Eastern ,Picea ,education ,Waste Management and Disposal ,Beech ,0105 earth and related environmental sciences ,Czech Republic ,education.field_of_study ,biology ,Ecology ,Norway ,Global warming ,Picea abies ,biology.organism_classification ,Pollution ,Europe ,Environmental science ,Climate sensitivity ,Monoculture - Abstract
Covering large parts of Europe, Norway spruce (Picea abies L Karst.) plays an important role in the adaptation strategy of forest services to future climate change. Although dendroecology can provide valuable information on the past relationships between tree growth and climate, most previous studies were biased towards species-specific distribution limits, where old individuals grow slowly under extreme conditions. In the present study, we investigated the growth variability and climate sensitivity of 2851 Norway spruce trees along longitudinal (E 12–26°), latitudinal (N 45–51°), and elevation (118–1591 m a.s.l.) gradients in central-eastern Europe. We reveal that summer weather significantly affects the radial growth of spruce trees, but the effects strongly vary along biogeographical gradients. Extreme summer heatwaves in 2000 and 2003 reduced the growth rates by 10–35%, most pronounced in the southern Carpathians. In contrast to the population in the Czech Republic, climate warming induced a synchronous decline in the growth rates across biogeographical gradients in the Carpathian arc. By demonstrating the increased vulnerability of Norway spruce under warmer climate conditions, we recommended that the forest services and conservation managers replace or admix monocultures of this species with more drought-resilient mixtures including fir, beech and other broadleaved species.
- Published
- 2020
43. The Climatic Response of Tree Ring Width Components of Ash (Fraxinus excelsior L.) and Common Oak (Quercus robur L.) from Eastern Europe
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Monica Ionita, Cătălin-Constantin Roibu, Andrei Mursa, Ionel Popa, Ilarie Leșan, Francisca Chiriloaei, Victor Sfeclă, and Viorica Nagavciuc
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0106 biological sciences ,Fraxinus excelsior L ,010504 meteorology & atmospheric sciences ,drought ,Eastern Europe ,tree-ring width components ,Fraxinus ,01 natural sciences ,Climatic data ,Dendrochronology ,Precipitation ,0105 earth and related environmental sciences ,biology ,ring-porous species ,Forestry ,lcsh:QK900-989 ,Vegetation ,15. Life on land ,biology.organism_classification ,Quercus robur L ,Stability map ,13. Climate action ,lcsh:Plant ecology ,Environmental science ,stability maps ,010606 plant biology & botany - Abstract
This paper aims to develop the first differentiated (earlywood&mdash, EW, latewood&mdash, LW, and total ring width&mdash, RW) dendrochronological series for ash (Fraxinus excelsior L.) and oak (Quercus robur L.) trees from the Republic of Moldova, and to analyze their climatic response and their spatio-temporal stability. For this, 18 ash and 26 oak trees were cored from the Dobrușa protected area, Republic of Moldova, Eastern Europe, and new EW, LW, and RW chronologies were developed for ash and oak covering the last century. The obtained results showed that the RW and LW have a similar climatic response for both species, while EW is capturing interannual climate variations and has a different reaction. The analyses performed with monthly climatic data revealed a significant and negative correlation with the mean air temperature and a significant and positive correlation with precipitation and the Standardized Precipitation-Evapotranspiration Index (SPEI) for both ash and oak. The temperature during the vegetation period has a strong influence on all tree-ring components of ash, while for oak the strong correlation was found only for LW. The positive and significant correlation between LW and RW with precipitation for both species, suggests that ash and oak are sensitive to the hydrological component and the precipitation is the main tree growth-limiting factor. Despite the significant correlation with precipitation and temperature for the whole analyzed period, the 25-year moving correlation analyses show that they are not stable in time and can switch from positive to negative or vice versa, while the correlation with SPEI3 drought index, which is a integration of both climatic parameters, is stable in time. By employing the stability map analysis, we show that oak and ash tree ring components, from the eastern part of the Republic of Moldova, have a stable and significant correlation with SPEI3 and scPDSI drought indices from February (January) until September, over the eastern part of Europe.
- Published
- 2020
44. Towards long-term sustainability of stomatal ozone flux monitoring at forest sites
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Elena Paoletti, Pierre Sicard, Yasutomo Hoshika, Silvano Fares, Ovidiu Badea, Diana Pitar, Ionel Popa, Alessandro Anav, Barbara Baesso Moura, and Alessandra De Marco
- Published
- 2022
- Full Text
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45. History dependent mechanical response of talin and its interaction to DLC1
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Narayan Dahal, Sabita Sharma, Binh Phan, Annie Eis, and Ionel Popa
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Biophysics - Published
- 2022
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46. The extracellular matrix–myosin pathway in mechanotransduction: from molecule to tissue
- Author
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Jennifer H. Gutzman and Ionel Popa
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0301 basic medicine ,extracellular matrix ,Biophysics ,Cell morphology ,Molecular Bases of Health & Disease ,General Biochemistry, Genetics and Molecular Biology ,myosins ,Extracellular matrix ,03 medical and health sciences ,0302 clinical medicine ,Myosin ,Mechanotransduction ,Cytoskeleton ,Review Articles ,Cancer ,mechanotransduction ,Molecular Interactions ,Chemistry ,protein unfolding ,talin ,Cell migration ,Adhesion ,Cell biology ,030104 developmental biology ,Cell Migration, Adhesion & Morphology ,Unfolded protein response ,General Agricultural and Biological Sciences ,030217 neurology & neurosurgery - Abstract
Mechanotransduction via the extracellular matrix (ECM)–myosin pathway is involved in determining cell morphology during development and in coupling external transient mechanical stimuli to the reorganization of the cytoskeleton. Here, we present a review on the molecular mechanisms involved in this pathway and how they influence cellular development and organization. We investigate key proteins involved in the ECM–myosin pathway and discuss how specific binding events and conformational changes under force are related to mechanical signaling. We connect these molecular mechanisms with observed morphological changes at the cellular and organism level. Finally, we propose a model encompassing the biomechanical signals along the ECM–myosin pathway and how it could be involved in cell adhesion, cell migration, and tissue architecture.
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- 2018
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47. A 781-year oak tree-ring chronology for the Middle Ages archaeological dating in Maramureș (Eastern Europe)
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Ovidiu Badea, Ólafur Eggertsson, Ionel Popa, and Constantin Nechita
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010506 paleontology ,010504 meteorology & atmospheric sciences ,Ecology ,New Chronology ,Plant Science ,Dendroclimatology ,Felling ,01 natural sciences ,Archaeology ,Dendroarchaeology ,Altitude ,Geography ,Dendrochronology ,Period (geology) ,0105 earth and related environmental sciences ,Chronology - Abstract
From 1997 to the present, a sustained project in the Maramureș region in Romania was completed with the construction of a 781-year oak tree-ring chronology. A total of 395 samples from living trees and 429 from archaeological wood were analysed with dendrochronological methods. The study aimed to provide the scientific community with a new oak chronology that could be applied in dendroarchaeology, dendroclimatology and dendroecology studies and also for interpreting past socio-economic events. Furthermore, we studied the number of sapwood rings and the growth pattern for different time periods. The chronology covered the continuous period of A.D. 1236‒2016. From the 824 samples collected, we separated 271 tree-ring series into a new chronology (A.D. 1406–2016), which fulfilled all the criteria necessary to reconstruct past climate and environmental changes. The resulting new tree-ring chronology indicated robust signal series intercorrelation (r = 0.55) and an average mean sensitivity of 0.21. Based on an analysis of the sapwood, we recommend estimating a number between 8 and 32 rings to the date of final ring for 95% confidence range of mean on the for felling in the Maramureș region. Additionally, we observed that the number of sapwood rings was not correlated with altitude or oak tree species.
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- 2018
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48. Stable oxygen isotopes in Romanian oak tree rings record summer droughts and associated large-scale circulation patterns over Europe
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Danny McCarroll, Monica Ionita, Aurel Perșoiu, Neil J. Loader, Ionel Popa, and Viorica Nagavciuc
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Atmospheric Science ,010504 meteorology & atmospheric sciences ,biology ,Stable isotope ratio ,Atmospheric circulation ,15. Life on land ,010502 geochemistry & geophysics ,biology.organism_classification ,Atmospheric sciences ,01 natural sciences ,Isotopes of oxygen ,Quercus robur ,Mediterranean sea ,13. Climate action ,Climatology ,Sunshine duration ,Dendrochronology ,Environmental science ,Precipitation ,0105 earth and related environmental sciences - Abstract
We present the first annual oxygen isotope record (1900–2016) from the latewood (LW) cellulose of oak trees (Quercus robur) from NW Romania. As expected, the results correlate negatively with summer relative humidity, sunshine duration and precipitation and positively with summer maximum temperature. Spatial correlation analysis reveals a clear signal reflecting drought conditions at a European scale. Interannual variability is influenced by large-scale atmospheric circulation and by surface temperatures in the North Atlantic Ocean and the Mediterranean Sea. There is considerable potential to produce long and well-replicated oak tree ring stable isotope chronologies in Romania which would allow reconstructions of both regional drought and large-scale circulation variability over southern and central Europe.
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- 2018
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49. Mechanobiology: protein refolding under force
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Ronen Berkovich and Ionel Popa
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0301 basic medicine ,Quantitative Biology::Biomolecules ,Work (thermodynamics) ,Materials science ,Dynamics (mechanics) ,Energy landscape ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Plateau (mathematics) ,General Biochemistry, Genetics and Molecular Biology ,Reaction coordinate ,03 medical and health sciences ,Mechanobiology ,030104 developmental biology ,Chemical physics ,Protein refolding ,Phase (matter) ,0210 nano-technology ,General Agricultural and Biological Sciences - Abstract
The application of direct force to a protein enables to probe wide regions of its energy surface through conformational transitions as unfolding, extending, recoiling, collapsing, and refolding. While unfolding under force typically displayed a two-state behavior, refolding under force, from highly extended unfolded states, displayed a more complex behavior. The first recording of protein refolding at a force quench step displayed an initial rapid elastic recoil, followed by a plateau phase at some extension, concluding with a collapse to a final state, at which refolding occurred. These findings stirred a lively discussion, which led to further experimental and theoretical investigation of this behavior. It was demonstrated that the polymeric chain of the unfolded protein is required to fully collapse to a globular conformation for the maturation of native structure. This behavior was modeled using one-dimensional free energy landscape over the end-to-end length reaction coordinate, the collective measured variable. However, at low forces, conformational space is not well captured by such models, and using two-dimensional energy surfaces provides further insight into the dynamics of this process. This work reviews the main concepts of protein refolding under constant force, which is essential for understanding how mechanotransducing proteins operate in vivo.
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- 2018
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50. Geospatial Patterns and Drivers of Forest Fire Occurrence in Romania
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Adrian Lorenţ, Ioannis Mitsopoulos, Giorgos Mallinis, Johann G. Goldammer, Ionel Popa, Bogdan Apostol, Marius Petrila, Vladimir Gancz, and Ştefan Neagu
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Geospatial analysis ,business.industry ,05 social sciences ,Geography, Planning and Development ,Fire prevention ,Environmental resource management ,0211 other engineering and technologies ,0507 social and economic geography ,Vulnerability ,Firefighting ,021107 urban & regional planning ,02 engineering and technology ,computer.software_genre ,Logistic regression ,Preparedness ,Environmental science ,Zoning ,Scale (map) ,business ,050703 geography ,computer - Abstract
Timely and accurate spatial explicit forest fire risk assessment and mapping is essential for forest fire prevention and suppression preparedness, firefighting resources allocation, and efficient multi-level fire management policies. This paper describes the application and validation of an approach for forest fire risk analysis and fire risk zoning over Romania in order to identify areas at national scale where fires are most likely to occur and to threat existing values, resources and assets. A modeling approach based on logistic regression using historical fire observations has been developed based on environmental, socio-economic and demographic data availability at national scale. Ignitions were positively related to south-western slopes and occurred mostly in fuel type of xerophyte oaks as well as in areas of heterogeneous (natural/agricultural) landscape. In addition to the human variables the pattern of ignitions was also significantly related to slope and temperature of the driest quarter. The risk zones produced by the multiple logistic regression model presented satisfactory accuracy when compared with historical fire perimeters extracted from MODIS imagery. The findings of this study could be used by fire managers to implement prevention measures at forest areas with high fire risk. Furthermore, attention should be given to areas with high fire ignition probability, where the vulnerability and potential impact is higher.
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- 2018
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