1. Identification of yeasts during alcoholic fermentation of tchapalo, a traditional sorghum beer from Cte d'Ivoire
- Author
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Kouakou Brou, Kouadio Florent N’guessan, Koffi Marcellin Dje, Serge Casaregola, Noémie Jacques, Lab Biotechnol & Microbiol Aliments, Université Abobo-Adjamé, Lab Nutr & Secur Alimentaire, MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, International Foundation for Science, Sweden [E/4167-1], and INRA
- Subjects
[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,Restriction Mapping ,DIVERSITY ,PITO ,BEVERAGES ,Ethanol fermentation ,Polymerase Chain Reaction ,Saccharomyces ,Candida tropicalis ,PCR-RFLP ,RIBOSOMAL-RNA GENE ,DNA, Fungal ,Mycological Typing Techniques ,RFLP ANALYSIS ,0303 health sciences ,biology ,SACCHAROMYCES-CEREVISIAE STRAINS ,Tchapalo ,Fungal genetics ,INTERNAL TRANSCRIBED SPACERS ,Beer ,food and beverages ,Biodiversity ,General Medicine ,GHANA ,DIFFERENTIATION ,D1/D2 domain ,Alcoholic fermentation ,medicine.drug ,Saccharomyces cerevisiae Proteins ,Molecular Sequence Data ,Saccharomyces cerevisiae ,DNA, Ribosomal ,Microbiology ,HaeIII ,REGION ,03 medical and health sciences ,Botany ,medicine ,Molecular Biology ,Sorghum ,030304 developmental biology ,Base Sequence ,030306 microbiology ,Sequence Analysis, DNA ,biology.organism_classification ,Actins ,Yeast ,Kodamaea ohmeri ,Molecular Typing ,Cote d'Ivoire ,Fermentation ,Sequence Alignment - Abstract
This study investigated the diversity and dynamics of yeasts involved in alcoholic fermentation of a traditional sorghum beer from Côte d'Ivoire, tchapalo. A total of 240 yeast strains were isolated from fermenting sorghum wort inoculated with dry yeast from two geographic regions of Côte d'Ivoire (Abidjan and Bondoukou). Initial molecular identification to the species level was carried out using RFLP of PCR-amplified internal transcribed spacers of rDNA (ITS1-5.8S-ITS2). Ten different profiles were obtained from the restriction of PCR products with the three endonucleases HaeIII, CfoI and HinfI. Sequence analysis of the D1/D2 domain of the 26S rDNA and the ACT1 gene allowed us to assign these groups to six different species: Saccharomyces cerevisiae-like, Candida tropicalis, Pichia kudriavzevii, Pichia kluyveri, Kodamaea ohmeri and Meyerozyma caribbica. The most frequent species associated with tchapalo fermentation was S. cerevisiae-like (87.36%), followed by C. tropicalis (5.45%) and M. caribbica (2.71%). S. cerevisiae-like strains were diploid heterozygotes and exhibited three to four nucleotides divergence from the type strain in the D1/D2 domain and several indels in the more discriminant sequence of the intron of the ACT1 gene. During the process, the yeast species isolated and their frequencies varied according to the geographic origin of the dry yeast. The occurrence of some species was sporadic and only two non-Saccharomyces species were found in the final product.
- Published
- 2011
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