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High-temperature (>70°C) ecosystems in Yellowstone National Park (YNP) provide an unparalleled opportunity to study chemotrophic archaea and their role in microbial community structure and function under highly constrained geochemical conditions. Acidilobus spp. (order Desulfurococcales) comprise one of the dominant phylotypes in hypoxic geothermal sulfur sediment and Fe(III)-oxide environments along with members of the Thermoproteales and Sulfolobales. Consequently, the primary goals of the current study were to analyze and compare replicate de novo sequence assemblies of Acidilobus-like populations from four different mildly acidic (pH 3.3 to 6.1) high-temperature (72°C to 82°C) environments and to identify metabolic pathways and/or protein-encoding genes that provide a detailed foundation of the potential functional role of these populations in situ. De novo assemblies of the highly similar Acidilobus-like populations (>99% 16S rRNA gene identity) represent near-complete consensus genomes based on an inventory of single-copy genes, deduced metabolic potential, and assembly statistics generated across sites. Functional analysis of coding sequences and confirmation of gene transcription by Acidilobus-like populations provide evidence that they are primarily chemoorganoheterotrophs, generating acetyl coenzyme A (acetyl-CoA) via the degradation of carbohydrates, lipids, and proteins, and auxotrophic with respect to several external vitamins, cofactors, and metabolites. No obvious pathways or protein-encoding genes responsible for the dissimilatory reduction of sulfur were identified. The presence of a formate dehydrogenase (Fdh) and other protein-encoding genes involved in mixed-acid fermentation supports the hypothesis that Acidilobus spp. function as degraders of complex organic constituents in high-temperature, mildly acidic, hypoxic geothermal systems.

Reduction of arsenate [As(V)] to arsenite [As(III)] influences the mobility and toxicity of arsenic (As), yet the mechanisms controlling the rate of reduction in soils and natural waters are poorly understood. The goal of this study was to determine processes affecting reduction rates of both aqueous and sorbed phase As(V). Reduction experiments were conducted anaerobically in serum bottles with a range of glucose and As(V) concentrations. Serum bottles were inoculated with microorganisms extracted directly from an agricultural soil having naturally elevated concentrations of As (unenriched population), or with a pure culture isolate obtained from the same soil after enrichment for As(V) reduction. At As(V) concentrations ranging from 6 to 600 [micro]M, the rate of As(V) reduction by the soil isolate was first order with respect to both As(V) concentration and microbial biomass. Reduction rates of As(V) with the soil isolate were 2 to 10 fold greater than in the unenriched population, suggesting As(V) reducers represented only a subset of the unenriched population. Compiled data indicated that the pure culture isolate was fermenting glucose, and potentially reducing As(V) as a detoxification mechanism. In a parallel study, reduction rates of As(V) with the unenriched population were evaluated in the presence of goethite or ferrihydrite. When redox potential decreased from 500 to near 0 mV, aqueous As concentrations decreased by approximately 30% in a goethite suspension with a high As surface coverage, yet increased by seven fold in a goethite suspension with a low As surface coverage. In a ferrihydrite suspension, aqueous As concentrations during reduction increased approximately 100 fold faster than in a goethite suspension at similar initial aqueous As(V) concentrations, corresponding to differences in Fe oxide surface areas and reductive dissolution rates. The results indicate that rates of As mobilization during reduction in soils are highly dependent on oxide surface area and As surface coverage.

Continuous soil pores may act as pathways for preferential flow depending on their size and water status (filled or drained), the latter being largely controlled by the soil matric head (h). The literature contains a wide range of proposed minimal pore sizes that may contribute to preferential flow. The objective of this study was to examine the relationship between h (and corresponding pore sizes) and preferential solute transport in a naturally structured soil. Tracer ([sup.3][H.sub.2]O and pentafluorobenzoic acid, [PFBA]) miscible displacement experiments were performed at several h values in intact soil cores (15-cm diameter, 30-cm length) using an apparatus especially suited to maintain constant h while collecting large effluent volumes. To test for the occurrence of preferential flow, observed breakthrough curves (BTCs) were evaluated for physical nonequilibrium (PNE) using a comparison between fitted local equilibrium (LE) and PNE models. Fitting results of the observed BTCs indicated absence of PNE in all solute transport experiments at h [is less than or equal to] -10 cm. Experiments at h [is greater than or equal to] -5 cm consistently exhibited PNE conditions, indicating the presence of preferential flow. These results suggest that soil pores with effective radii of 150 [micro]m and smaller (water-filled at h = -10 cm) do not contribute to preferential flow. Observed pore water velocities were not indicative of the presence or absence of preferential flow conditions. Continuous measurements of soil water content ([Theta]) using time domain reflectometry (TDR) revealed that at h = -10 cm, [is less than] 2% of the soil volume (1-5% of [Theta] at saturation) had drained.

The influence of a nonionic (alcohol ethoxylate) surfactant (Witconol SN70) on biodegradation of phenanthrene and hexadecane (nonaqueous-phase liquid) in soil was studied in batch and transport systems. Simultaneous enhancement of phenanthrene and hexadecane degradation was noted at surfactant doses resulting in aqueous-phase surfactant concentrations below the critical micelle concentration (CMC). Conversely,degradation rates of both compounds declined to essentially zero at supra-CMC doses, suggesting that distinct mechanisms of inhibition and enhancement were operating depending on the effective surfactant concentration (i.e., accounting for surfactant sorption, log KD = 2.2 L/kg). Surfactant doses resulting in enhanced degradation correlated with enhanced gross microbial activity as determined using total CO2 evolution rates. Supra-CMC doses that resulted in inhibited degradation did not suppress gross microbial activity. Furthermore, measurements of phenanthrene solubilization and surface tension indicated that phenanthrene was solubilized at supra-CMC levelsof surfactant. Mechanisms of inhibition of phenanthrene and hexadecane degradation at supra-CMC surfactant concentrations may include changes in interfacial chemistry and subsequent mass transfer processes due to sorbed surfactant, reduced bioavailability of micelle-bound phenanthrene and hexadecane, or inhibition of specific members of the microbial community responsible for hydrophobic organic compound degradation. [ABSTRACT FROM AUTHOR]

Arsenic concentrations in 850 km of the Madison and Upper Missouri Rivers exceed the Montana State human health standard (0.24 Mu M). In addition, ground water As concentrations in the northern portion of the Lower Madison River Valley are above the federal drinking water standard (0.67 Mu M) and correlate with high soluble As levels in overlying soils. The objectives of this study were to determine processes affecting As solubility in soils of the Madison and Upper Missouri River Basins and assess potential impacts of long-term irrigation with As-rich river water on As mobility. Sixteen irrigated (>20 yr of irrigation) and nonirrigated (never irrigated) soils were sampled in fourmajor regions adjacent to the Madison and Upper Missouri Rivers. There were no significant differences (Alpha = 0.05) in total or solubleAs levels between irrigated and nonirrigated soils within any of thefour regions. In addition, sorption coefficients (Kd values) in six paired soils selected for additional chemical characterization were not significantly different (Alpha = 0.05) between irrigated and nonirrigated soils. Ammonium oxalate extractable Fe and Mn concentrations were found to be positively correlated with Kd and Olsen P concentration was found to be negatively correlated with Kd based on a multiple linear regression (r2 = 0.92). Sequential extractions performed for a subset of soils showed that labile As concentrations were similar between irrigated and nonirrigated soils. Soils that had been irrigated for >100 yr had additional As sorption capacities of at least 3 mg kg -1 in saturated column studies following 30 yr of simulated irrigation. Based onthis suite of data, it was determined that irrigation history has not significantly affected As solubility or attenuation capacities in soils of the study area. [ABSTRACT FROM AUTHOR]