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The hyporheic zone (HZ), the region beneath or alongside a streambed, can play a vital role in a stream ecosystem. Previous studies have examined the impacts of in-stream structures on the HZ and river restoration; however, studies on optimizing the design of in-stream structures are still lacking. Therefore, this study aims to propose a method for optimizing the design of in-stream structures (e.g., weirs) through comprehensively considering both nitrogen removal amount (NRA) and nitrogen removal ratio (NRR) in the HZ based on numerical modelling. The Hydrologic Engineering Center’s River Analysis System (HEC-RAS) and COMSOL Multiphysics are employed for surface water and hyporheic flow simulations, respectively, and these two models are coupled by the hydraulic head along the surface of the streambed. The NRA and NRR are both closely related with residence time (RT), while the NRA is also influenced by hyporheic flux. Using the model outputs under different scenarios, regression equations for estimating the relevant variables (e.g., the maximum upstream distance in the subsurface flow influenced by the weir, the RT, and the hyporheic flux) are proposed. Then, the cumulative NRA (CNRA) and NRR can be calculated, and an objective function is formulated as the product of the normalized CNRA and NRR. The results show that the optimal height of the weir can be obtained based on the proposed method, and the validation shows the good general performance of this method. Sensitivity analysis indicates that the optimal height generally can be sensitive to the river discharge, i.e., the optimal height increases when the river discharge increases and vice versa. In addition, it is observed that, in the case of the optimal height, hyporheic flux increases when the slope increases while the influence of depth to bedrock on hyporheic flux is not significant. This study enhances our understanding of the optimal in-stream structure design, and potentially benefits river restoration in the face of continual degradation caused by human activities.

The independent effects of in-stream structure ( ISS) and fish foraging on stream properties have been well documented, but few studies have explored the interactive effects of ISS and fishes on streams. Herein, we tested the independent and interactive effects of ISS and a generalist fish (Blacktail shiner, Cyprinella venusta) on suspended organic matter ( SOM), benthic algae, invertebrate density and fish growth using experimental mesocosms. We found that Blacktail shiner foraging affected all of the ecosystem properties; however, in some cases, the fish effects differed between mesocosms with and without ISS. Specifically, mesocosms with ISS provided greater surface area for invertebrate colonisation and enhanced food resources for Blacktail shiner. As a result, benthic foraging by Blacktail shiner was reduced in these mesocosms. The reduced benthic foraging in turn enhanced benthic algae and benthic invertebrates via a bottom-up, nutrient excretion pathway. The ISS-dependent effects of fish on these stream properties, however, were only evident at low and intermediate fish densities (1 and 2 fish·m−2 respectively). This was likely because at the highest fish density (4 fish·m−2) intense fish foraging overrode any mediating effects of ISS. Furthermore, fish growth decreased with fish density because of intraspecific competition, but this negative effect on growth was reduced in mesocosms with ISS because of the increased forage base. However, the positive effect on fish growth was weak and only marginally significant. Our data suggest that fish-mediated effects on streams are context dependent, changing with microhabitat availability (e.g. ISS) and density of the fish population. [ABSTRACT FROM AUTHOR]

In-stream structures contribute greatly to the biodiversity in streams and play an important role in restoring and protecting rivers. They usually have complex geometries. To evaluate their impact and effectiveness, computational models are increasingly used. However, how to faithfully represent them in computer models remains a challenge. Often, simplifications have to be made. This work evaluated the effects of geometric simplification of an example in-stream structure, an engineered log jam (ELJ), in computational models. Three different representations were considered, namely full resolution, the porous media model and the solid barrier model. The turbulent flow was resolved with large eddy simulation (LES). First, the simulations were validated with a physical experiment in a flume. Then, the results from the three models were compared and analyzed on various aspects related to the stability and functionalities of the structures. Unsurprisingly, it is found that the porous media model and the solid barrier model, which are computationally economic, can describe the flow dynamics only to some extent. From the calibration of drag force and wake length, we found that the equivalent grain size d50 in the porosity model should scale as the key element diameter for the simulated ELJ. A wake length scale analysis was performed for the semi-bounded flow around this in-stream structure near the bank. The length estimator in the literature for unbounded vegetation patches can be used with modifications. The results also show that the flow passing through the porous in-stream structure has a significant impact on mean velocity, turbulence kinetic energy, sediment transport capacity and integral wake length. Since geometrically-fully-resolved simulations are not currently feasible for engineering practices, the following suggestions are made based on this study. If the near-field and wake are important for the purpose of the structure, the well-calibrated porosity model seems to perform better than the solid barrier model. However, care needs to be taken when interpreting the results because this work also identified substantial loss of physical information with the porosity model. When the emphasis is the far field away from the structure, both the porosity model and the solid barrier model give comparable results. [ABSTRACT FROM AUTHOR]

The hyporheic zone (HZ), the region beneath or alongside a streambed, can play a vital role in a stream ecosystem. Previous studies have examined the impacts of in-stream structures on the HZ and river restoration; however, studies on optimizing the design of in-stream structures are still lacking. Therefore, this study aims to propose a method for optimizing the design of in-stream structures (e.g., weirs) through comprehensively considering both nitrogen removal amount (NRA) and nitrogen removal ratio (NRR) in the HZ based on numerical modelling. The Hydrologic Engineering Center's River Analysis System (HEC-RAS) and COMSOL Multiphysics are employed for surface water and hyporheic flow simulations, respectively, and these two models are coupled by the hydraulic head along the surface of the streambed. The NRA and NRR are both closely related with residence time (RT), while the NRA is also influenced by hyporheic flux. Using the model outputs under different scenarios, regression equations for estimating the relevant variables (e.g., the maximum upstream distance in the subsurface flow influenced by the weir, the RT, and the hyporheic flux) are proposed. Then, the cumulative NRA (CNRA) and NRR can be calculated, and an objective function is formulated as the product of the normalized CNRA and NRR. The results show that the optimal height of the weir can be obtained based on the proposed method, and the validation shows the good general performance of this method. Sensitivity analysis indicates that the optimal height generally can be sensitive to the river discharge, i.e., the optimal height increases when the river discharge increases and vice versa. In addition, it is observed that, in the case of the optimal height, hyporheic flux increases when the slope increases while the influence of depth to bedrock on hyporheic flux is not significant. This study enhances our understanding of the optimal in-stream structure design, and potentially benefits river restoration in the face of continual degradation caused by human activities. [ABSTRACT FROM AUTHOR]