10 results on '"Ilumäe, Anne-Mai"'
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2. Phylogenetic history of patrilineages rare in northern and eastern Europe from large-scale re-sequencing of human Y-chromosomes
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Ilumäe, Anne-Mai, Post, Helen, Flores, Rodrigo, Karmin, Monika, Sahakyan, Hovhannes, Mondal, Mayukh, Montinaro, Francesco, Saag, Lauri, Bormans, Concetta, Sanchez, Luisa Fernanda, Ameur, Adam, Gyllensten, Ulf, Kals, Mart, Mägi, Reedik, Pagani, Luca, Behar, Doron M., Rootsi, Siiri, and Villems, Richard
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- 2021
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3. A recent bottleneck of Y chromosome diversity coincides with a global change in culture
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Karmin, Monika, Saag, Lauri, Vicente, Mário, Sayres, Melissa A Wilson, Järve, Mari, Talas, Ulvi Gerst, Rootsi, Siiri, Ilumäe, Anne-Mai, Mägi, Reedik, Mitt, Mario, Pagani, Luca, Puurand, Tarmo, Faltyskova, Zuzana, Clemente, Florian, Cardona, Alexia, Metspalu, Ene, Sahakyan, Hovhannes, Yunusbayev, Bayazit, Hudjashov, Georgi, DeGiorgio, Michael, Loogväli, Eva-Liis, Eichstaedt, Christina, Eelmets, Mikk, Chaubey, Gyaneshwer, Tambets, Kristiina, Litvinov, Sergei, Mormina, Maru, Xue, Yali, Ayub, Qasim, Zoraqi, Grigor, Korneliussen, Thorfinn Sand, Akhatova, Farida, Lachance, Joseph, Tishkoff, Sarah, Momynaliev, Kuvat, Ricaut, François-Xavier, Kusuma, Pradiptajati, Razafindrazaka, Harilanto, Pierron, Denis, Cox, Murray P, Sultana, Gazi Nurun Nahar, Willerslev, Rane, Muller, Craig, Westaway, Michael, Lambert, David, Skaro, Vedrana, Kovačevic´, Lejla, Turdikulova, Shahlo, Dalimova, Dilbar, Khusainova, Rita, Trofimova, Natalya, Akhmetova, Vita, Khidiyatova, Irina, Lichman, Daria V, Isakova, Jainagul, Pocheshkhova, Elvira, Sabitov, Zhaxylyk, Barashkov, Nikolay A, Nymadawa, Pagbajabyn, Mihailov, Evelin, Seng, Joseph Wee Tien, Evseeva, Irina, Migliano, Andrea Bamberg, Abdullah, Syafiq, Andriadze, George, Primorac, Dragan, Atramentova, Lubov, Utevska, Olga, Yepiskoposyan, Levon, Marjanovic´, Damir, Kushniarevich, Alena, Behar, Doron M, Gilissen, Christian, Vissers, Lisenka, Veltman, Joris A, Balanovska, Elena, Derenko, Miroslava, Malyarchuk, Boris, Metspalu, Andres, Fedorova, Sardana, Eriksson, Anders, Manica, Andrea, Mendez, Fernando L, Karafet, Tatiana M, Veeramah, Krishna R, Bradman, Neil, Hammer, Michael F, Osipova, Ludmila P, Balanovsky, Oleg, Khusnutdinova, Elza K, Johnsen, Knut, Remm, Maido, Thomas, Mark G, Tyler-Smith, Chris, Underhill, Peter A, Willerslev, Eske, Nielsen, Rasmus, Metspalu, Mait, Villems, Richard, and Kivisild, Toomas
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Biological Sciences ,Genetics ,Human Genome ,Base Sequence ,Chromosomes ,Human ,Y ,DNA ,Mitochondrial ,Evolution ,Molecular ,Genetic Variation ,Genetics ,Population ,Haplotypes ,Humans ,Male ,Models ,Genetic ,Phylogeny ,Racial Groups ,Sequence Analysis ,DNA ,Medical and Health Sciences ,Bioinformatics - Abstract
It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50-100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192-307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47-52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males.
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- 2015
4. Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations
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Tambets, Kristiina, Yunusbayev, Bayazit, Hudjashov, Georgi, Ilumäe, Anne-Mai, Rootsi, Siiri, Honkola, Terhi, Vesakoski, Outi, Atkinson, Quentin, Skoglund, Pontus, Kushniarevich, Alena, Litvinov, Sergey, Reidla, Maere, Metspalu, Ene, Saag, Lehti, Rantanen, Timo, Karmin, Monika, Parik, Jüri, Zhadanov, Sergey I., Gubina, Marina, Damba, Larisa D., Bermisheva, Marina, Reisberg, Tuuli, Dibirova, Khadizhat, Evseeva, Irina, Nelis, Mari, Klovins, Janis, Metspalu, Andres, Esko, Tõnu, Balanovsky, Oleg, Balanovska, Elena, Khusnutdinova, Elza K., Osipova, Ludmila P., Voevoda, Mikhail, Villems, Richard, Kivisild, Toomas, and Metspalu, Mait
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- 2018
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5. Uurali rahvaste geneetiline ajalugu läbi isaliini N ja autosoomse varieeruvuse prisma
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Ilumäe, Anne-Mai, Rootsi, Siiri, juhendaja, Villems, Richard, juhendaja, Tambets, Kristiina, juhendaja, and Tartu Ülikool. Loodus- ja täppisteaduste valdkond
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Y-kromosoom ,haplotüüp ,dissertations ,haplotype ,Y chromosome ,North Eurasia ,uurali rahvad ,dissertatsioonid ,fülogeograafia ,ETD ,population genetics ,phylogeography ,fülogeneetilised suhted ,väitekirjad ,single nucleotide polymorphisms ,Põhja-Euraasia ,Uralic peoples ,phylogenetic relationships ,populatsioonigeneetika ,ühenukleotiidsed polümorfismid - Abstract
Väitekirja elektrooniline versioon ei sisalda publikatsioone, Euroopast Lääne-Siberini levinud uurali keelkond postuleeriti enam kui saja aasta eest. Mitme põlvkonna eri teadusvaldkondade teadlaste töö tulemusena on kogutud aukartustäratav andmestik selle keelkonna rahvaste kohta, kuid erilise huvi objektiks on jäänud küsimus nende ühisest päritolust, võimalikust algkodust ja rändeteedest, mille kohta on välja pakutud arvukalt huvitavaid hüpoteese. Eelkõige geograafiast sõltuvas isalt pojale päranduvate Y-kromosoomi variantide ehk isaliinide jaotusmustris eristub selgelt haplogrupp N, mis seob nii Euroopa kui Aasia põhjaaladel elavaid rahvaid ning iseloomustab ka suurt osa uurali keeli kõnelevatest meestest. Käesoleva doktoritöö eesmärgiks oli esiteks rakendada kaasaegseid DNA järjestustehnoloogiaid hindamaks haplogrupi N fülogeneetilise puu sisestruktuuri ja alamklaadide ekspansiooniaegu ning levikut Põhja-Euraasias. Teiseks testida uusimate statistiliste meetoditega võimaliku geneetilise ühisosa olemasolu uurali keelesugulaste vahel, tuginedes ülegenoomsetele genotüpiseerimisandmetele. Selgus, et haplogrupp N on tõenäoliselt algselt pärit Põhja-Hiinast või mandrilisest Kagu-Aasiast ning haplogrupi sisemine struktuur koosneb mitmest piiritletud geograafilise levikuga alamklaadist. Ühel neist, haplogrupi N3 alamklaad N3a3’6, mille levikuaja algus jääb umbes 5000 aasta tagusesse aega, on tähelepanuväärselt lai geograafiline levik, mis ulatub Läänemere idakaldalt kuni Mongoolia ja Vene Beringiani ning hõlmab märkimisväärse osa kõikidesse suurematesse Põhja-Euraasia keelkondadesse kuuluvatest meestest. Ülegenoomsete andmete põhjal on enamusel uurali keeli kõnelejatest piiratud, kuid tuvastatav hiljutine tõenäoliselt Siberi päritolu geneetiline ühisosa, mis vihjab keelte levikuga kaasas käinud inimeste rändele. Samas on see ühine geneetiline komponent seotud ulatuslikumate ida poolt lähtunud mõjutustega Kirde-Euroopa kaasaegsete rahvaste geenifondile, mis tõenäoliselt ei piirdunud ainult uurali keeli rääkinud inimeste sisserändega., The Uralic linguistic family has been postulated for more than a hundred years with a current distribution area spanning from Europe to West Siberia. The prehistory of Uralic languages and their speakers has been under scrutiny of several generations of scientists from a variety of scientific fields. Numerous hypotheses have been proposed regarding their common origin, dispersal routes and possible homeland, but these questions continue to remain scientifically disputable. A clear disruptor in the pattern of geography-dependent distribution of Y-chromosomal paternal lineages is haplogroup N that unites populations across entire north Eurasia and describes a fair share of Uralic-speaking males in both northeastern Europe and west Siberia. First aim of this thesis was to apply novel DNA re-sequencing approach to resolve the inner phylogenetic structure of haplogroup N and estimate coalescent ages along with geographic distribution of its inner subclades. Second aim was to test for a common autosomal genetic substrate between Uralic speakers using novel statistical methods. The results suggest hg N to initially originate from North China or Mainland Southeast Asia and contain several novel subclades with distinct phylogeographic spread. One such subclade, N3a3’6 within subhaplogroup N3, displays an expansion time of 5000 years, but has a remarkably wide geographic distribution ranging from the eastern shores of the Baltic Sea to Mongolia and Pacific Russian Beringia, encompassing a considerate fraction of men from all major linguistic families in north Eurasia. Whole genome data shows a small, yet significant autosomal genetic component of possible Siberian ancestry shared between most of the Uralic-speaking populations, suggesting a migratory contribution to the dispersal of the languages. This component is part of a broader eastern influence on the genepool of modern northern Europe and was probably not limited to the spread of extant Uralic languages., https://www.ester.ee/record=b5267833
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- 2019
6. Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families
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Ilumäe, Anne-Mai, primary, Reidla, Maere, additional, Chukhryaeva, Marina, additional, Järve, Mari, additional, Post, Helen, additional, Karmin, Monika, additional, Saag, Lauri, additional, Agdzhoyan, Anastasiya, additional, Kushniarevich, Alena, additional, Litvinov, Sergey, additional, Ekomasova, Natalya, additional, Tambets, Kristiina, additional, Metspalu, Ene, additional, Khusainova, Rita, additional, Yunusbayev, Bayazit, additional, Khusnutdinova, Elza K., additional, Osipova, Ludmila P., additional, Fedorova, Sardana, additional, Utevska, Olga, additional, Koshel, Sergey, additional, Balanovska, Elena, additional, Behar, Doron M., additional, Balanovsky, Oleg, additional, Kivisild, Toomas, additional, Underhill, Peter A., additional, Villems, Richard, additional, and Rootsi, Siiri, additional
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- 2016
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7. Standing at the Gateway to Europe - The Genetic Structure of Western Balkan Populations Based on Autosomal and Haploid Markers
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Kovacevic, Lejla, primary, Tambets, Kristiina, additional, Ilumäe, Anne-Mai, additional, Kushniarevich, Alena, additional, Yunusbayev, Bayazit, additional, Solnik, Anu, additional, Bego, Tamer, additional, Primorac, Dragan, additional, Skaro, Vedrana, additional, Leskovac, Andreja, additional, Jakovski, Zlatko, additional, Drobnic, Katja, additional, Tolk, Helle-Viivi, additional, Kovacevic, Sandra, additional, Rudan, Pavao, additional, Metspalu, Ene, additional, and Marjanovic, Damir, additional
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- 2014
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8. Unravelling the distinct strains of Tharu ancestry
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Chaubey, Gyaneshwer, primary, Singh, Manvendra, additional, Crivellaro, Federica, additional, Tamang, Rakesh, additional, Nandan, Amrita, additional, Singh, Kamayani, additional, Sharma, Varun Kumar, additional, Pathak, Ajai Kumar, additional, Shah, Anish M, additional, Sharma, Vishwas, additional, Singh, Vipin Kumar, additional, Selvi Rani, Deepa, additional, Rai, Niraj, additional, Kushniarevich, Alena, additional, Ilumäe, Anne-Mai, additional, Karmin, Monika, additional, Phillip, Anand, additional, Verma, Abhilasha, additional, Prank, Erik, additional, Singh, Vijay Kumar, additional, Li, Blaise, additional, Govindaraj, Periyasamy, additional, Chaubey, Akhilesh Kumar, additional, Dubey, Pavan Kumar, additional, Reddy, Alla G, additional, Premkumar, Kumpati, additional, Vishnupriya, Satti, additional, Pande, Veena, additional, Parik, Jüri, additional, Rootsi, Siiri, additional, Endicott, Phillip, additional, Metspalu, Mait, additional, Lahr, Marta Mirazon, additional, van Driem, George, additional, Villems, Richard, additional, Kivisild, Toomas, additional, Singh, Lalji, additional, and Thangaraj, Kumarasamy, additional
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- 2014
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9. A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe
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Rootsi, Siiri, primary, Zhivotovsky, Lev A, additional, Baldovič, Marian, additional, Kayser, Manfred, additional, Kutuev, Ildus A, additional, Khusainova, Rita, additional, Bermisheva, Marina A, additional, Gubina, Marina, additional, Fedorova, Sardana A, additional, Ilumäe, Anne-Mai, additional, Khusnutdinova, Elza K, additional, Voevoda, Mikhail I, additional, Osipova, Ludmila P, additional, Stoneking, Mark, additional, Lin, Alice A, additional, Ferak, Vladimir, additional, Parik, Jüri, additional, Kivisild, Toomas, additional, Underhill, Peter A, additional, and Villems, Richard, additional
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- 2006
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10. A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe.
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Rootsi, Siiri, Zhivotovsky, Lev A., Baldovič, Marian, Kayser, Manfred, Kutuev, Ildus A., Khusainova, Rita, Bermisheva, Marina A., Gubina, Marina, Fedorova, Sardana A., Ilumäe, Anne-Mai, Khusnutdinova, Elza K., Voevoda, Mikhail I., Osipova, Ludmila P., Stoneking, Mark, Lin, Alice A., Ferak, Vladimir, Parik, Jüri, Kivisild, Toomas, Underhill, Peter A., and Villems, Richard
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HUMAN genetics ,Y chromosome ,SEX chromosomes ,HUMAN chromosomes ,MALES - Abstract
A large part of Y chromosome lineages in East European and East Asian human populations belong to haplogroup (hg) NO, which is composed of two sister clades N-M231 and O-M175. The O-clade is relatively old (around 30 thousand years (ky)) and encompasses the vast majority of east and Southeast Asian male lineages, as well as significant proportion of those in Oceanian males. On the other hand, our detailed analysis of hg N suggests that its high frequency in east Europe is due to its more recent expansion westward on a counter-clock northern route from inner Asia/southern Siberia, approximately 12–14 ky ago. The widespread presence of hg N in Siberia, together with its absence in Native Americans, implies its spread happened after the founder event for the Americas. The most frequent subclade N3, arose probably in the region of present day China, and subsequently experienced serial bottlenecks in Siberia and secondary expansions in eastern Europe. Another branch, N2, forms two distinctive subclusters of STR haplotypes, Asian (N2-A) and European (N2-E), the latter now mostly distributed in Finno-Ugric and related populations. These phylogeographic patterns provide evidence consistent with male-mediated counter-clockwise late Pleistocene–Holocene migratory trajectories toward Northwestern Europe from an ancestral East Asian source of Paleolithic heritage.European Journal of Human Genetics (2007) 15, 204–211. doi:10.1038/sj.ejhg.5201748; published online 6 December 2006 [ABSTRACT FROM AUTHOR]
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- 2007
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