26 results on '"Ilott N"'
Search Results
2. MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T cell responses
- Author
-
Heuberger, C. E., primary, Janney, A., additional, Ilott, N., additional, Bertocchi, A., additional, Pott, S., additional, Gu, Y., additional, Pohin, M., additional, Friedrich, M., additional, Mann, E. H., additional, Pearson, C., additional, Powrie, F. M., additional, Pott, J., additional, Thornton, E., additional, and Maloy, K. J., additional
- Published
- 2023
- Full Text
- View/download PDF
3. Adipocyte autophagy limits gut inflammation by controlling oxylipin and <scp>IL‐10</scp>
- Author
-
Richter, FC, Friedrich, M, Kampschulte, N, Piletic, K, Alsaleh, G, Zummach, R, Hecker, J, Pohin, M, Ilott, N, Guschina, I, Wideman, SK, Johnson, E, Borsa, M, Hahn, P, Morriseau, C, Hammock, BD, Schipper, HS, Edwards, CM, Zechner, R, Siegmund, B, Weidinger, C, Schebb, NH, Powrie, F, and Simon, AK
- Subjects
autophagy ,1.1 Normal biological development and functioning ,adipocyte ,oxylipin ,Medical and Health Sciences ,Oral and gastrointestinal ,General Biochemistry, Genetics and Molecular Biology ,Cytochrome P-450 Enzyme System ,Underpinning research ,Information and Computing Sciences ,Adipocytes ,Humans ,2.1 Biological and endogenous factors ,Oxylipins ,Obesity ,Aetiology ,Molecular Biology ,Metabolic and endocrine ,Nutrition ,Inflammation ,General Immunology and Microbiology ,Inflammatory and immune system ,General Neuroscience ,Fatty Acids ,Biological Sciences ,Interleukin-10 ,Cardiovascular and Metabolic Diseases ,IL-10 ,Nonesterified ,Developmental Biology - Abstract
Lipids play a major role in inflammatory diseases by altering inflammatory cell functions, either through their function as energy substrates or as lipid mediators such as oxylipins. Autophagy, a lysosomal degradation pathway that limits inflammation, is known to impact on lipid availability, however, whether this controls inflammation remains unexplored. We found that upon intestinal inflammation visceral adipocytes upregulate autophagy and that adipocyte-specific loss of the autophagy gene Atg7 exacerbates inflammation. While autophagy decreased lipolytic release of free fatty acids, loss of the major lipolytic enzyme Pnpla2/Atgl in adipocytes did not alter intestinal inflammation, ruling out free fatty acids as anti-inflammatory energy substrates. Instead, Atg7-deficient adipose tissues exhibited an oxylipin imbalance, driven through an NRF2-mediated upregulation of Ephx1. This shift reduced secretion of IL-10 from adipose tissues, which was dependent on the cytochrome P450-EPHX pathway, and lowered circulating levels of IL-10 to exacerbate intestinal inflammation. These results suggest an underappreciated fat-gut crosstalk through an autophagy-dependent regulation of anti-inflammatory oxylipins via the cytochrome P450-EPHX pathway, indicating a protective effect of adipose tissues for distant inflammation.
- Published
- 2023
- Full Text
- View/download PDF
4. A conserved population of MHC II-restricted, innate-like, commensal-reactive T cells in the gut of humans and mice
- Author
-
Hackstein, C-P, Costigan, D, Drexhage, L, Pearson, C, Bullers, S, Ilott, N, Akther, HD, Gu, Y, FitzPatrick, MEB, Harrison, OJ, Garner, LC, Mann, EH, Pandey, S, Friedrich, M, Provine, NM, Uhlig, HH, Marchi, E, Powrie, F, Klenerman, P, and Thornton, EE
- Subjects
Coleoptera ,Mice ,Multidisciplinary ,Humans ,Animals ,Cytokines ,General Physics and Astronomy ,Lymphocyte Count ,General Chemistry ,Colitis ,Immunologic Surveillance ,General Biochemistry, Genetics and Molecular Biology - Abstract
Interactions with commensal microbes shape host immunity on multiple levels and are recognized to play a pivotal role in human health and disease. In this study, we show that MHC-II restricted, commensal-reactive T cells in the colon of both humans and mice acquire transcriptional and functional characteristics typically associated with innate-like T cells, including the expression of the key transcription factor PLZF and the ability to respond to cytokines including IL-12, IL-18 and IL-23 in a TCR-independent manner. These MHC-II restricted, innate-like, commensal-reactive T cells (TMIC) are endowed with a polyfunctional effector potential spanning classic Th1- and Th17-cytokines, cytotoxic molecules as well as regulators of epithelial homeostasis and represent an abundant and conserved cell population in the human and murine colon. T cells with the TMIC phenotype were increased in ulcerative colitis patients and their presence aggravated pathology in DSS-treated mice, pointing towards a pathogenic role in colitis. Our findings add TMIC cells to the expanding spectrum of innate-like immune cells positioned at the frontline of intestinal immune surveillance, capable of acting as sentinels of microbes and the local cytokine milieu.
- Published
- 2022
- Full Text
- View/download PDF
5. A genetic study of ADHD and activity level in infancy
- Author
-
Ilott, N., Saudino, K. J., Wood, A., and Asherson, P.
- Published
- 2010
- Full Text
- View/download PDF
6. OP28 Host–microbial crosstalk in the pathogenesis of inflammation and cancer in primary sclerosing cholangitis
- Author
-
Neyazi, M, Ilott, N, Investigators, Oxford IBD Cohort Study, Travis, S, Arancibia, C, Powrie, F, and Geremia, A
- Subjects
Pathogenesis ,Crosstalk (biology) ,business.industry ,Gastroenterology ,medicine ,Cancer research ,Inflammation ,General Medicine ,medicine.symptom ,medicine.disease ,business ,Primary sclerosing cholangitis - Published
- 2019
7. The short chain fatty acid butyrate imprints an antimicrobial program in macrophages
- Author
-
Schulthess, J, Pandey, S, Capitani, M, Rue-Albrecht, K, Arnold, I, Franchini, F, Chomka, A, Ilott, N, Johnston, D, Pires, E, McCullagh, J, Sansom, S, Arancibia-Carcamo, C, Uhlig, H, and Powrie, F
- Subjects
Colon ,Microbiota ,Macrophages ,Cell Differentiation ,Fatty Acids, Volatile ,Monocytes ,Article ,Intestines ,Mice, Inbred C57BL ,Butyrates ,Gene Expression Regulation ,Anti-Infective Agents ,Animals ,Cytokines ,Dysbiosis ,Humans ,Cells, Cultured - Abstract
Summary Host microbial cross-talk is essential to maintain intestinal homeostasis. However, maladaptation of this response through microbial dysbiosis or defective host defense toward invasive intestinal bacteria can result in chronic inflammation. We have shown that macrophages differentiated in the presence of the bacterial metabolite butyrate display enhanced antimicrobial activity. Butyrate-induced antimicrobial activity was associated with a shift in macrophage metabolism, a reduction in mTOR kinase activity, increased LC3-associated host defense and anti-microbial peptide production in the absence of an increased inflammatory cytokine response. Butyrate drove this monocyte to macrophage differentiation program through histone deacetylase 3 (HDAC3) inhibition. Administration of butyrate induced antimicrobial activity in intestinal macrophages in vivo and increased resistance to enteropathogens. Our data suggest that (1) increased intestinal butyrate might represent a strategy to bolster host defense without tissue damaging inflammation and (2) that pharmacological HDAC3 inhibition might drive selective macrophage functions toward antimicrobial host defense., Graphical Abstract, Highlights • Butyrate induces differentiation of macrophages with potent antimicrobial function • Enhanced antimicrobial function is a consequence of glycolysis and mTOR inhibition • Single-cell RNA-sequencing identifies butyrate-induced antimicrobial peptides • Butyrate inhibits HDAC3 to drive metabolic changes and microbicidal function, Macrophages maintain gut homeostasis by eliminating invasive pathogens and regulating inflammatory responses. Schulthess et al. demonstrate that butyrate, a bacterial fermentation product, imprints potent antimicrobial activity during macrophage differentiation through HDAC3i function.
- Published
- 2019
8. Alpha kinase 1 controls intestinal inflammation by suppressing the IL-12/Th1 axis
- Author
-
Ryzhakov, G, West, N, Franchini, F, Clare, S, Ilott, N, Sansom, S, Bullers, S, Pearson, C, Costain, A, Vaughan-Jackson, A, Goettel, J, Ermann, J, Horwitz, B, Buti, L, Lu, X, Mukhopadhyay, S, Snapper, S, and Powrie, FM
- Subjects
Male ,Colon ,Science ,Primary Cell Culture ,Bone Marrow Cells ,Interleukin-23 ,Helicobacter Infections ,Mice ,Animals ,Humans ,lcsh:Science ,Bone Marrow Transplantation ,Mice, Knockout ,Mice, Inbred BALB C ,Macrophages ,Th1 Cells ,Colitis ,Inflammatory Bowel Diseases ,Interleukin-12 ,Mice, Inbred C57BL ,Disease Models, Animal ,Radiation Chimera ,lcsh:Q ,Female ,Helicobacter hepaticus ,Protein Kinases - Abstract
Inflammatory bowel disease (IBD) are heterogenous disorders of the gastrointestinal tract caused by a spectrum of genetic and environmental factors. In mice, overlapping regions of chromosome 3 have been associated with susceptibility to IBD-like pathology, including a locus called Hiccs. However, the specific gene that controls disease susceptibility remains unknown. Here we identify a Hiccs locus gene, Alpk1 (encoding alpha kinase 1), as a potent regulator of intestinal inflammation. In response to infection with the commensal pathobiont Helicobacter hepaticus (Hh), Alpk1-deficient mice display exacerbated interleukin (IL)-12/IL-23 dependent colitis characterized by an enhanced Th1/interferon(IFN)-γ response. Alpk1 controls intestinal immunity via the hematopoietic system and is highly expressed by mononuclear phagocytes. In response to Hh, Alpk1−/− macrophages produce abnormally high amounts of IL-12, but not IL-23. This study demonstrates that Alpk1 promotes intestinal homoeostasis by regulating the balance of type 1/type 17 immunity following microbial challenge.
- Published
- 2018
- Full Text
- View/download PDF
9. S13 The microbiology of pleural infection, an approach based on 16s RRNA gene next generation sequencing
- Author
-
Kanellakis, NI, primary, Bedawi, E, additional, Corcoran, JP, additional, Gerry, S, additional, Hallifax, R, additional, Mercer, R, additional, George, V, additional, Dudina, A, additional, Wrightson, JM, additional, Asciak, R, additional, Miller, R, additional, Dobson, M, additional, Ilott, N, additional, Maskell, NA, additional, Psallidas, I, additional, and Rahman, NM, additional
- Published
- 2019
- Full Text
- View/download PDF
10. A Large Polysaccharide Produced by Helicobacter hepaticus Induces an Anti-inflammatory Gene Signature in Macrophages
- Author
-
Danne, C, Ryzhakov, G, Martínez-López, M, Ilott, N, Franchini, F, Cuskin, F, Lowe, E, Bullers, S, Arthur, J, Powrie, F, Ministerio de Educación y Ciencia (España), Wellcome Trust, Kennedy Trust, Foundation Lous Jeantet, Unión Europea. Comisión Europea, and European Research Council
- Subjects
CREB ,Macrophage ,Anti-inflammatory gene signature ,Macrophages ,Host-microbe interactions ,Polysaccharides, Bacterial ,MSK1/2 ,Interleukin-23 ,Inflammatory bowel disease ,Toll-Like Receptor 2 ,Interleukin-10 ,Mice ,Mutualism ,TLR2 ,Animals ,Polysaccharide ,Symbiosis ,Helicobacter hepaticus ,Immunosuppressive Agents - Abstract
Interactions between the host and its microbiota are of mutual benefit and promote health. Complex molecular pathways underlie this dialog, but the identity of microbe-derived molecules that mediate the mutualistic state remains elusive. Helicobacter hepaticus is a member of the mouse intestinal microbiota that is tolerated by the host. In the absence of an intact IL-10 signaling, H. hepaticus induces an IL-23-driven inflammatory response in the intestine. Here we investigate the interactions between H. hepaticus and host immune cells that may promote mutualism, and the microbe-derived molecule(s) involved. Our results show that H. hepaticus triggers early IL-10 induction in intestinal macrophages and produces a large soluble polysaccharide that activates a specific MSK/CREB-dependent anti-inflammatory and repair gene signature via the receptor TLR2. These data identify a host-bacterial interaction that promotes mutualistic mechanisms at the intestinal interface. Further understanding of this pathway may provide novel prevention and treatment strategies for inflammatory bowel disease. We thank the High-Throughput Genomics Group at the Wellcome Trust Centre for Human Genetics for the generation of the Sequencing data. F.F. was supported by Cancer Research UK (OCRC-DPhil13-FF) and N.E.I. by the Kennedy Trust (KENN 15 16 03). M.M.-L. received a fellowship from the Spanish Ministry of Education, Culture, and Sport. This work was funded by the Wellcome Trust UK (095688/Z/11/Z), an ERC grant (Advanced Grant Ares(2013)3687660), and the Fondation Louis Jeantet Sí
- Published
- 2017
11. Tuning the transcriptional response to hypoxia by inhibiting HIF prolyl- and asparaginyl-hydroxylases
- Author
-
Chan, M, Ilott, N, Schödel, J, Sims, D, Tumber, A, Lippl, K, Mole, D, Pugh, C, Ratcliffe, P, Ponting, C, and Schofield, C
- Abstract
The hypoxia inducible factor (HIF) system orchestrates cellular responses to hypoxia in animals. HIF is an α/β-heterodimeric transcription factor that regulates the expression of hundreds of genes in a tissue context dependent manner. The major hypoxia-sensing component of the HIF system involves oxygen-dependent catalysis by the HIF hydroxylases; in humans there are three HIF prolyl hydroxylases (PHD1-3) and an asparaginyl hydroxylase (FIH). PHD catalysis regulates HIFα levels and FIH catalysis regulates HIF activity. How differences in HIFα hydroxylation status relate to variations in the induction of specific HIF target gene transcription is unknown. We report studies using small molecule HIF hydroxylases inhibitors that investigate the extent to which HIF target gene expression is induced by PHD or FIH inhibition. The results reveal substantial differences in the role of prolyl- and asparaginyl-hydroxylation in regulating hypoxia responsive genes in cells. PHD inhibitors with different structural scaffolds behave similarly. Under the tested conditions, a broad-spectrum 2OG dioxygenase inhibitor is a better mimic of the overall transcriptional response to hypoxia than the selective PHD inhibitors, consistent with an important role for FIH in the hypoxic transcriptional response. Indeed, combined application of selective PHD and FIH inhibitors resulted in the transcriptional induction of a subset of genes not fully responsive to PHD inhibition alone. Thus, for the therapeutic regulation of HIF target genes, it is important to consider both PHD and FIH activity, and in the case of some sets of target genes, simultaneous inhibition of the PHDs and FIH catalysis may be preferable.
- Published
- 2016
- Full Text
- View/download PDF
12. Testing for the mediating role of endophenotypes using molecular genetic data in a twin study of ADHD traits
- Author
-
Pinto, R, Asherson, P, Ilott, N, Cheung, C, and Kuntsi, J
- Subjects
Genetic Markers ,Male ,Norepinephrine Plasma Membrane Transport Proteins ,Databases, Factual ,Endophenotypes ,Statistics as Topic ,Twins ,inattention ,hyperactivity–impulsivity ,Polymorphism, Single Nucleotide ,inhibition ,RTV ,endophenotype ,Haplotypes ,Attention Deficit Disorder with Hyperactivity ,Humans ,Female ,Genetic Predisposition to Disease ,reading difficulties ,Child ,Alleles ,Genetic Association Studies ,Research Articles ,Research Article - Abstract
Family and twin studies have identified endophenotypes that capture familial and genetic risk in attention-deficit/hyperactivity disorder (ADHD), but it remains unclear if they lie on the causal pathway. Here, we illustrate a stepwise approach to identifying intermediate phenotypes. First, we use previous quantitative genetic findings to delineate the expected pattern of genetically correlated phenotypes. Second, we identify overlapping genetic associations with ADHD-related quantitative traits. Finally, we test for the mediating role of associated endophenotypes. We applied this approach to a sample of 1,312 twins aged 7-10. Based on previous twin model-fitting analyses, we selected hyperactivity-impulsivity, inattention, reading difficulties (RD), reaction time variability (RTV) and commission errors (CE), and tested for association with selected ADHD risk alleles. For nominally significant associations with both a symptom and a cognitive variable, matching the expected pattern based on previous genetic correlations, we performed mediation analysis to distinguish pleiotropic from mediating effects. The strongest association was observed for the rs7984966 SNP in the serotonin receptor gene (HTR2A), and RTV (P = 0.007; unadjusted for multiple testing). Mediation analysis suggested that CE (38%) and RTV (44%) substantially mediated the association between inattention and the T-allele of SNP rs3785157 in the norepinephrine transporter gene (SLC6A2) and the T-allele of SNP rs7984966 in HTR2A, respectively. The SNPs tag risk-haplotypes but are not thought to be functionally significant. While these exploratory findings are preliminary, requiring replication, this study demonstrates the value of this approach that can be adapted to the investigation of multiple genetic markers and polygenic risk scores. © 2016 The Authors. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics Published by Wiley Periodicals, Inc.
- Published
- 2016
- Full Text
- View/download PDF
13. Epithelial-derived IL-18 regulates Th17 cell differentiation and Foxp3+ Treg cell function in the intestine
- Author
-
Harrison, O J, primary, Srinivasan, N, additional, Pott, J, additional, Schiering, C, additional, Krausgruber, T, additional, Ilott, N E, additional, and Maloy, K J, additional
- Published
- 2015
- Full Text
- View/download PDF
14. Epithelial-derived IL-18 regulates Th17 cell differentiation and Foxp3+ Treg cell function in the intestine.
- Author
-
Harrison, O J, Srinivasan, N, Pott, J, Schiering, C, Krausgruber, T, Ilott, N E, and Maloy, K J
- Published
- 2015
- Full Text
- View/download PDF
15. Genetic influences on attention deficit hyperactivity disorder symptoms from age 2 to 3: A quantitative and molecular genetic investigation
- Author
-
Saudino Kimberly J, Ilott Nicholas E, and Asherson Philip
- Subjects
Psychiatry ,RC435-571 - Abstract
Abstract Background A twin study design was used to assess the degree to which additive genetic variance influences ADHD symptom scores across two ages during infancy. A further objective in the study was to observe whether genetic association with a number of candidate markers reflects results from the quantitative genetic analysis. Method We have studied 312 twin pairs at two time-points, age 2 and age 3. A composite measure of ADHD symptoms from two parent-rating scales: The Child Behavior Checklist/1.5 - 5 years (CBCL) hyperactivity scale and the Revised Rutter Parent Scale for Preschool Children (RRPSPC) was used for both quantitative and molecular genetic analyses. Results At ages 2 and 3 ADHD symptoms are highly heritable (h2 = 0.79 and 0.78, respectively) with a high level of genetic stability across these ages. However, we also observe a significant level of genetic change from age 2 to age 3. There are modest influences of non-shared environment at each age independently (e2 = 0.22 and 0.21, respectively), with these influences being largely age-specific. In addition, we find modest association signals in DAT1 and NET1 at both ages, along with suggestive specific effects of 5-HTT and DRD4 at age 3. Conclusions ADHD symptoms are heritable at ages 2 and 3. Additive genetic variance is largely shared across these ages, although there are significant new effects emerging at age 3. Results from our genetic association analysis reflect these levels of stability and change and, more generally, suggest a requirement for consideration of age-specific genotypic effects in future molecular studies.
- Published
- 2010
- Full Text
- View/download PDF
16. Investigation of the serotonin 2C receptor gene in attention deficit hyperactivity disorder in UK samples
- Author
-
Ilott Nicholas, Sun Bo, Brookes Keeley, Xu Xiaohui, and Asherson Philip
- Subjects
Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Background Attention deficit hyperactivity disorder (ADHD) is a common, childhood-onset neurodevelopmental disorder that is more frequent in males than females. Several genes on the X chromosome have been studied as candidate risk factors for ADHD including the 5-HT2C receptor (HTR2C) gene. Association between polymorphisms in HTR2C and ADHD were reported in a recent study. Findings In this study we investigated the association between ADHD and two polymorphisms C-759T (rs3813929) and G-697C (rs518147) in the promoter region of the HTR2C gene using a sample of 180 UK ADHD probands and their parents. We have shown that the -697G allele was significantly over-transmitted to affected ADHD probands (P = 0.017). No association was detected between the C-759T polymorphism and ADHD. Haplotype analysis of the two markers revealed no significantly increased transmission of any haplotype to ADHD. Conclusion The findings provide evidence that the G-allele of the G-697C HTR2C polymorphism may be involved in the development of ADHD. The results replicate one of the findings published recently.
- Published
- 2009
- Full Text
- View/download PDF
17. Delineating the causal role of the gut microbiota in experimental colitis
- Author
-
Jeffery, R, Ilott, N, Kleanthous, K, and Powrie, F
- Subjects
Immunology ,Microbiology - Abstract
The gut microbiota is altered (dysbiosis) in patients with inflammatory bowel disease (IBD), although it is not currently understood whether this is causal of, or consequential to, disease development. Delineating the nature of these associations is imperative to inform microbiota-based IBD therapeutics. One such avenue is targeting of Enterobacteriaceae expansion, a dysbiotic signature common to murine and human colitis, through tungstate-mediated inhibition of Enterobacteriaceae growth. Although Enterobacteriaceae expansion is common to multiple animal models, tungstate inhibition of Enterobacteriaceae and amelioration of pathology has been predominantly shown in dextran sodium sulfate (DSS) colitis. Thus, in this thesis we aimed to replicate and expand on the therapeutic potential of tungstate in animal models, namely DSS, Helicobacter hepaticus + anti-interleukin-10 receptor (aIL-10R) and Citrobacter rodentium colitis. We found limited effects of tungstate on DSS-induced Enterobacteriaceae expansion and no effects on pathology development across all models. Thus, the ability of tungstate to ameliorate disease appears context-dependent. Although tungstate targets a feature of dysbiosis, it does not inform on the bacteria-bacteria and host-bacteria interactions which underpin disease pathogenesis. The H. hepaticus + aIL-10R model is poised to explore such interactions, as disease is dependent on the presence of other commensals, including the gnotobiotic 12-member Oligo-Mouse-Microbiota (OMM12). In this thesis, we characterise dysbiosis and intestinal metabolite alterations in the H. hepaticus + aIL-10R OMM12 model and show that E. clostridioformis YL32 is a key colitogenic member in this context. This is likely due to interactions between E. clostridioformis YL32 and H. hepaticus, as H. hepaticus upregulates putative virulence gene expression in E. clostridioformis YL32 mice, in-turn associated with changes in host inflammatory gene expression. Importantly, these interactions are therapeutically targetable as selective depletion of E. clostridioformis YL32 reverts established colitis. This work serves as proof of concept that microbiota inter-bacterial and host-bacterial interactions serve as novel therapeutic strategies for IBD.
- Published
- 2023
18. A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease.
- Author
-
Thomas T, Friedrich M, Rich-Griffin C, Pohin M, Agarwal D, Pakpoor J, Lee C, Tandon R, Rendek A, Aschenbrenner D, Jainarayanan A, Voda A, Siu JHY, Sanches-Peres R, Nee E, Sathananthan D, Kotliar D, Todd P, Kiourlappou M, Gartner L, Ilott N, Issa F, Hester J, Turner J, Nayar S, Mackerodt J, Zhang F, Jonsson A, Brenner M, Raychaudhuri S, Kulicke R, Ramsdell D, Stransky N, Pagliarini R, Bielecki P, Spies N, Marsden B, Taylor S, Wagner A, Klenerman P, Walsh A, Coles M, Jostins-Dean L, Powrie FM, Filer A, Travis S, Uhlig HH, Dendrou CA, and Buckley CD
- Subjects
- Humans, Inflammatory Bowel Diseases drug therapy, Inflammatory Bowel Diseases immunology, Crohn Disease drug therapy, Crohn Disease immunology, Longitudinal Studies, Colitis, Ulcerative drug therapy, Colitis, Ulcerative immunology, Tumor Necrosis Factor-alpha antagonists & inhibitors, Tumor Necrosis Factor-alpha metabolism, Transcriptome, Female, Adult, Male, Interferons metabolism, Signal Transduction, Arthritis, Rheumatoid drug therapy, Arthritis, Rheumatoid immunology, Single-Cell Analysis, Adalimumab therapeutic use
- Abstract
Precision medicine in immune-mediated inflammatory diseases (IMIDs) requires a cellular understanding of treatment response. We describe a therapeutic atlas for Crohn's disease (CD) and ulcerative colitis (UC) following adalimumab, an anti-tumour necrosis factor (anti-TNF) treatment. We generated ~1 million single-cell transcriptomes, organised into 109 cell states, from 216 gut biopsies (41 subjects), revealing disease-specific differences. A systems biology-spatial analysis identified granuloma signatures in CD and interferon (IFN)-response signatures localising to T cell aggregates and epithelial damage in CD and UC. Pretreatment differences in epithelial and myeloid compartments were associated with remission outcomes in both diseases. Longitudinal comparisons demonstrated disease progression in nonremission: myeloid and T cell perturbations in CD and increased multi-cellular IFN signalling in UC. IFN signalling was also observed in rheumatoid arthritis (RA) synovium with a lymphoid pathotype. Our therapeutic atlas represents the largest cellular census of perturbation with the most common biologic treatment, anti-TNF, across multiple inflammatory diseases., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
19. MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T-cell responses.
- Author
-
Heuberger CE, Janney A, Ilott N, Bertocchi A, Pott S, Gu Y, Pohin M, Friedrich M, Mann EH, Pearson C, Powrie FM, Pott J, Thornton E, and Maloy KJ
- Subjects
- Animals, Mice, Helicobacter hepaticus immunology, Enterobacteriaceae Infections immunology, Helicobacter Infections immunology, Epithelial Cells immunology, Lymphocyte Activation, Coculture Techniques, Mice, Inbred C57BL, Disease Models, Animal, Mice, Knockout, Histocompatibility Antigens Class II metabolism, Histocompatibility Antigens Class II immunology, Antigen Presentation, Citrobacter rodentium immunology, Intestinal Mucosa immunology, Intestinal Mucosa microbiology, CD4-Positive T-Lymphocytes immunology
- Abstract
Although intestinal epithelial cells (IECs) can express major histocompatibility complex class II (MHC II), especially during intestinal inflammation, it remains unclear if antigen presentation by IECs favors pro- or anti-inflammatory CD4
+ T-cell responses. Using selective gene ablation of MHC II in IECs and IEC organoid cultures, we assessed the impact of MHC II expression by IECs on CD4+ T-cell responses and disease outcomes in response to enteric bacterial pathogens. We found that intestinal bacterial infections elicit inflammatory cues that greatly increase expression of MHC II processing and presentation molecules in colonic IECs. Whilst IEC MHC II expression had little impact on disease severity following Citrobacter rodentium or Helicobacter hepaticus infection, using a colonic IEC organoid-CD4+ T cell co-culture system, we demonstrate that IECs can activate antigen-specific CD4+ T cells in an MHC II-dependent manner, modulating both regulatory and effector Th cell subsets. Furthermore, we assessed adoptively transferred H. hepaticus-specific CD4+ T cells during intestinal inflammation in vivo and report that IEC MHC II expression dampens pro-inflammatory effector Th cells. Our findings indicate that IECs can function as non-conventional antigen-presenting cells and that IEC MHC II expression fine-tunes local effector CD4+ T-cell responses during intestinal inflammation., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
20. A pro-inflammatory gut mucosal cytokine response is associated with mild COVID-19 disease and superior induction of serum antibodies.
- Author
-
Costigan D, Fenn J, Yen S, Ilott N, Bullers S, Hale J, Greenhalf W, Conibear E, Koycheva A, Madon K, Jahan I, Huang M, Badhan A, Parker E, Rosadas C, Jones K, McClure M, Tedder R, Taylor G, Baillie KJ, Semple MG, Openshaw PJM, Pearson C, Johnson J, Lalvani A, and Thornton EE
- Subjects
- Humans, Cytokines metabolism, SARS-CoV-2, Prospective Studies, Feces, Antibodies, Viral, COVID-19
- Abstract
The relationship between gastrointestinal tract infection, the host immune response, and the clinical outcome of disease is not well understood in COVID-19. We sought to understand the effect of intestinal immune responses to SARS-CoV-2 on patient outcomes including the magnitude of systemic antibody induction. Combining two prospective cohort studies, International Severe Acute Respiratory and emerging Infections Consortium Comprehensive Clinical Characterisations Collaboration (ISARIC4C) and Integrated Network for Surveillance, Trials and Investigations into COVID-19 Transmission (INSTINCT), we acquired samples from 88 COVID-19 cases representing the full spectrum of disease severity and analysed viral RNA and host gut cytokine responses in the context of clinical and virological outcome measures. There was no correlation between the upper respiratory tract and faecal viral loads. Using hierarchical clustering, we identified a group of fecal cytokines including Interleukin-17A, Granulocyte macrophage colony-stimulating factor, Tumor necrosis factorα, Interleukin-23, and S100A8, that were transiently elevated in mild cases and also correlated with the magnitude of systemic anti-Spike-receptor-binding domain antibody induction. Receiver operating characteristic curve analysis showed that expression of these gut cytokines at study enrolment in hospitalised COVID-19 cases was associated negatively with overall clinical severity implicating a protective role in COVID-19. This suggests that a productive intestinal immune response may be beneficial in the response to a respiratory pathogen and a biomarker of a successful barrier response., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
21. A conserved population of MHC II-restricted, innate-like, commensal-reactive T cells in the gut of humans and mice.
- Author
-
Hackstein CP, Costigan D, Drexhage L, Pearson C, Bullers S, Ilott N, Akther HD, Gu Y, FitzPatrick MEB, Harrison OJ, Garner LC, Mann EH, Pandey S, Friedrich M, Provine NM, Uhlig HH, Marchi E, Powrie F, Klenerman P, and Thornton EE
- Subjects
- Humans, Mice, Animals, Lymphocyte Count, Immunologic Surveillance, Cytokines, Colitis chemically induced
- Abstract
Interactions with commensal microbes shape host immunity on multiple levels and play a pivotal role in human health and disease. Tissue-dwelling, antigen-specific T cells are poised to respond to local insults, making their phenotype important in the relationship between host and microbes. Here we show that MHC-II restricted, commensal-reactive T cells in the colon of both humans and mice acquire transcriptional and functional characteristics associated with innate-like T cells. This cell population is abundant and conserved in the human and murine colon and endowed with polyfunctional effector properties spanning classic Th1- and Th17-cytokines, cytotoxic molecules, and regulators of epithelial homeostasis. T cells with this phenotype are increased in ulcerative colitis patients, and their presence aggravates pathology in dextran sodium sulphate-treated mice, pointing towards a pathogenic role in colitis. Our findings add to the expanding spectrum of innate-like immune cells positioned at the frontline of intestinal immune surveillance, capable of acting as sentinels of microbes and the local cytokine milieu., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
22. The bacteriology of pleural infection (TORPIDS): an exploratory metagenomics analysis through next generation sequencing.
- Author
-
Kanellakis NI, Wrightson JM, Gerry S, Ilott N, Corcoran JP, Bedawi EO, Asciak R, Nezhentsev A, Sundaralingam A, Hallifax RJ, Economides GM, Bland LR, Daly E, Yao X, Maskell NA, Miller RF, Crook DW, Hinks TSC, Dong T, Psallidas I, and Rahman NM
- Subjects
- Anti-Bacterial Agents, Bacteria genetics, Bacteria, Anaerobic genetics, High-Throughput Nucleotide Sequencing, Humans, Metagenomics, Pilot Projects, RNA, Ribosomal, 16S genetics, Staphylococcus aureus genetics, Bacteriology, Coinfection, Communicable Diseases, Community-Acquired Infections, Pleural Diseases diagnosis
- Abstract
Background: Pleural infection is a common and severe disease with high morbidity and mortality worldwide. The knowledge of pleural infection bacteriology remains incomplete, as pathogen detection methods based on culture have insufficient sensitivity and are biased to selected microbes. We designed a study with the aim to discover and investigate the total microbiome of pleural infection and assess the correlation between bacterial patterns and 1-year survival of patients., Methods: We assessed 243 pleural fluid samples from the PILOT study, a prospective observational study on pleural infection, with 16S rRNA next generation sequencing. 20 pleural fluid samples from patients with pleural effusion due to a non-infectious cause and ten PCR-grade water samples were used as controls. Downstream analysis was done with the DADA2 pipeline. We applied multivariate Cox regression analyses to investigate the association between bacterial patterns and 1-year survival of patients with pleural infection., Findings: Pleural infection was predominately polymicrobial (192 [79%] of 243 samples), with diverse bacterial frequencies observed in monomicrobial and polymicrobial disease and in both community-acquired and hospital-acquired infection. Mixed anaerobes and other Gram-negative bacteria predominated in community-acquired polymicrobial infection whereas Streptococcus pneumoniae prevailed in monomicrobial cases. The presence of anaerobes (hazard ratio 0·46, 95% CI 0·24-0·86, p=0·015) or bacteria of the Streptococcus anginosus group (0·43, 0·19-0·97, p=0·043) was associated with better patient survival, whereas the presence (5·80, 2·37-14·21, p<0·0001) or dominance (3·97, 1·20-13·08, p=0·024) of Staphylococcus aureus was linked with lower survival. Moreover, dominance of Enterobacteriaceae was associated with higher risk of death (2·26, 1·03-4·93, p=0·041)., Interpretation: Pleural infection is a predominantly polymicrobial infection, explaining the requirement for broad spectrum antibiotic cover in most individuals. High mortality infection associated with S aureus and Enterobacteriaceae favours more aggressive, with a narrower spectrum, antibiotic strategies., Funding: UK Medical Research Council, National Institute for Health Research Oxford Biomedical Research Centre, Wellcome Trust, Oxfordshire Health Services Research Committee, Chinese Academy of Medical Sciences, and John Fell Fund., Competing Interests: Declaration of interests IP works for AstraZeneca in a non-related field. TSCH reports grants from the Wellcome Trust and The Guardians of the Beit Fellowship, during the conduct of the study; personal fees from AstraZeneca, TEVA, and Peer Voice; grants from Pfizer, National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, University of Oxford, Sensyne Health, and Kymab, outside the submitted work. RFM reports personal fees from Gilead, outside the submitted work. All other authors declare no competing interests., (Copyright © 2022 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
23. Deconvolution of monocyte responses in inflammatory bowel disease reveals an IL-1 cytokine network that regulates IL-23 in genetic and acquired IL-10 resistance.
- Author
-
Aschenbrenner D, Quaranta M, Banerjee S, Ilott N, Jansen J, Steere B, Chen YH, Ho S, Cox K, Arancibia-Cárcamo CV, Coles M, Gaffney E, Travis SP, Denson L, Kugathasan S, Schmitz J, Powrie F, Sansom SN, and Uhlig HH
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Autocrine Communication, Cells, Cultured, Female, Gene Expression, Gene Expression Regulation, Gene Regulatory Networks, Homeostasis genetics, Humans, Inflammatory Bowel Diseases drug therapy, Interleukin-10 metabolism, Interleukin-1alpha metabolism, Interleukin-1beta metabolism, Lipopolysaccharides, Male, Middle Aged, Monocytes immunology, Paracrine Communication, Receptors, Interleukin-10 antagonists & inhibitors, Receptors, Interleukin-10 metabolism, Signal Transduction genetics, Transcriptome, Tumor Necrosis Factor-alpha adverse effects, Young Adult, Drug Resistance genetics, Inflammatory Bowel Diseases genetics, Interleukin-10 genetics, Interleukin-23 Subunit p19 biosynthesis, Interleukin-23 Subunit p19 genetics, Monocytes metabolism
- Abstract
Objective: Dysregulated immune responses are the cause of IBDs. Studies in mice and humans suggest a central role of interleukin (IL)-23-producing mononuclear phagocytes in disease pathogenesis. Mechanistic insights into the regulation of IL-23 are prerequisite for selective IL-23 targeting therapies as part of personalised medicine., Design: We performed transcriptomic analysis to investigate IL-23 expression in human mononuclear phagocytes and peripheral blood mononuclear cells. We investigated the regulation of IL-23 expression and used single-cell RNA sequencing to derive a transcriptomic signature of hyperinflammatory monocytes. Using gene network correlation analysis, we deconvolved this signature into components associated with homeostasis and inflammation in patient biopsy samples., Results: We characterised monocyte subsets of healthy individuals and patients with IBD that express IL-23. We identified autosensing and paracrine sensing of IL-1α/IL-1β and IL-10 as key cytokines that control IL-23-producing monocytes. Whereas Mendelian genetic defects in IL-10 receptor signalling induced IL-23 secretion after lipopolysaccharide stimulation, whole bacteria exposure induced IL-23 production in controls via acquired IL-10 signalling resistance. We found a transcriptional signature of IL-23-producing inflammatory monocytes that predicted both disease and resistance to antitumour necrosis factor (TNF) therapy and differentiated that from an IL-23-associated lymphocyte differentiation signature that was present in homeostasis and in disease., Conclusion: Our work identifies IL-10 and IL-1 as critical regulators of monocyte IL-23 production. We differentiate homeostatic IL-23 production from hyperinflammation-associated IL-23 production in patients with severe ulcerating active Crohn's disease and anti-TNF treatment non-responsiveness. Altogether, we identify subgroups of patients with IBD that might benefit from IL-23p19 and/or IL-1α/IL-1β-targeting therapies upstream of IL-23., Competing Interests: Competing interests: BS, SH, KC and JS are current or previous employees of Eli Lilly. HU received research support or consultancy fees from UCB Pharma, Eli Lilly, Boehringer Ingelheim, Pfizer, Celgene, OMass and AbVie. FP has received research support or consultancy fees from GSK, UCB Pharma, Medimmune, Janssen and Eli Lilly. SPLT has been adviser to, in receipt of educational or research grants from, or invited lecturer for AbbVie, Amgen, Asahi, Biogen, Boehringer Ingelheim, BMS, Cosmo, Elan, Enterome, Ferring, FPRT Bio, Genentech/Roche, Genzyme, Glenmark, GW Pharmaceuticals, Janssen, Johnson & Johnson, Eli Lilly, Merck, Novartis, Novo Nordisk, Ocera, Pfizer, Shire, Santarus, SigmoidPharma, Synthon, Takeda, Tillotts, Topivert, Trino Therapeutics with Wellcome Trust, UCB Pharma, Vertex, VHsquared, Vifor, Warner Chilcott and Zeria. SK has received consultancy fees from Janssen and Takeda., (© Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY. Published by BMJ.)
- Published
- 2021
- Full Text
- View/download PDF
24. Mom's diet matters: Maternal prebiotic intake in mice reduces anxiety and alters brain gene expression and the fecal microbiome in offspring.
- Author
-
Hebert JC, Radford-Smith DE, Probert F, Ilott N, Chan KW, Anthony DC, and Burnet PWJ
- Subjects
- Animals, Anxiety, Brain, Female, Gene Expression, Mice, Pregnancy, Diet, Prebiotics
- Abstract
Compelling evidence links enteric microbes to brain function and behavior. Galacto-oligosaccharide prebiotics have been shown to modulate the composition of gut flora and induce metabolic, neurochemical, and behavioral changes in adult rodents. Despite the brain being most susceptible to environmental factors, such as nutrients and toxins, during the earliest stages of development, it is unknown whether maternal prebiotic supplementation during gestation and lactation influences the offspring gut microbiome, brain, or behavior. The aim of this study was to test whether maternal galacto-oligosaccharide intake during pregnancy and lactation alters the brain and behavior in naïve and endotoxin-challenged offspring. CD1 female mice received either normal drinking water or water supplemented with Bimuno® galacto-oligosaccharides (B-GOS) during gestation and suckling. Offspring behavior was tested at weaning age or adulthood, and a cross-foster design was employed in a separate cohort to differentiate between effects of prenatal and postnatal maternal B-GOS intake. Lipopolysaccharide was also administered to pups at postnatal day 9 to determine whether maternal B-GOS influences the neurobiological and behavioral effects of a neonatal pro-inflammatory challenge in adulthood. Fecal microbiome composition and metabolites were analyzed to explore potential relationships between the maternal microbiome, the offspring gut microbiome, and the offspring brain and behavior. Maternal B-GOS supplementation increased exploratory behavior and reduced expression of hippocampal glutamate receptor genes in young, weaning-age offspring. In addition, postnatal, but not prenatal, B-GOS supplementation increased fecal butyrate and propionate levels. Finally, in adult offspring, perinatal B-GOS intake increased cortical glutamate receptor subunits in females, increased social preference, and reduced anxiety. We provide novel and comprehensive evidence for the influence of maternal prebiotic intake on offspring behavior, brain gene expression, and gut microbiome composition in mice., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
25. Prenatal exposure to nicotine impairs performance of the 5-choice serial reaction time task in adult rats.
- Author
-
Schneider T, Ilott N, Brolese G, Bizarro L, Asherson PJ, and Stolerman IP
- Subjects
- Analysis of Variance, Animals, Animals, Newborn, Body Weight drug effects, Cognition Disorders chemically induced, Developmental Disabilities etiology, Dopamine Plasma Membrane Transport Proteins genetics, Dopamine Plasma Membrane Transport Proteins metabolism, Female, Gene Expression Regulation drug effects, Male, Motor Activity drug effects, Neuropsychological Tests, Nicotine blood, Nuclear Receptor Subfamily 4, Group A, Member 2 genetics, Nuclear Receptor Subfamily 4, Group A, Member 2 metabolism, Pregnancy, Psychomotor Performance drug effects, Rats, Receptors, Dopamine D4 genetics, Receptors, Dopamine D4 metabolism, Receptors, Dopamine D5 genetics, Receptors, Dopamine D5 metabolism, Reflex drug effects, Choice Behavior drug effects, Cognition Disorders physiopathology, Nicotine adverse effects, Nicotinic Agonists adverse effects, Prenatal Exposure Delayed Effects physiopathology, Reaction Time drug effects
- Abstract
Cigarette smoking is associated with a wide variety of adverse reproductive outcomes, including increased infant mortality and decreased birth weight. Prenatal exposure to tobacco smoke, of which nicotine is a major teratogenic component, has also been linked to the acceleration of the risk for different psychiatric disorders, including conduct disorder and attention deficit hyperactivity disorder (ADHD). Whether this increased risk is influenced by the direct effects of gestational nicotine exposure on the developing fetus remains uncertain. In this study we provide experimental evidence for the effects of prenatal nicotine exposure on measures of attention and impulsivity in adult male rats. Offspring of females exposed during pregnancy to 0.06 mg/ml nicotine solution as the only source of water (daily consumption: 69.6±1.4 ml/kg; nicotine blood level: 96.0±31.9 ng/ml) had lower birth weight and delayed sensorimotor development measured by negative geotaxis, righting reflex, and grip strength. In the 5-choice serial reaction time test, adult rats showed increased numbers of anticipatory responses and omissions errors, more variable response times, and lower accuracy with evidence of delayed learning of the task demands when the 1 s stimulus duration was introduced. In contrast, prenatal nicotine exposure had no effect on exploratory locomotion or delay-discounting test. Prenatal nicotine exposure increased expression of the D5 dopamine receptor gene in the striatum, but did not change expression of other dopamine-related genes (DRD4, DAT1, NR4A2, and TH) in either the striatum or the prefrontal cortex. These data suggest a direct effect of prenatal nicotine exposure on important aspects of attention, inhibitory control, or learning later in life.
- Published
- 2011
- Full Text
- View/download PDF
26. Investigation of the serotonin 2C receptor gene in attention deficit hyperactivity disorder in UK samples.
- Author
-
Xu X, Brookes K, Sun B, Ilott N, and Asherson P
- Abstract
Background: Attention deficit hyperactivity disorder (ADHD) is a common, childhood-onset neurodevelopmental disorder that is more frequent in males than females. Several genes on the X chromosome have been studied as candidate risk factors for ADHD including the 5-HT2C receptor (HTR2C) gene. Association between polymorphisms in HTR2C and ADHD were reported in a recent study., Findings: In this study we investigated the association between ADHD and two polymorphisms C-759T (rs3813929) and G-697C (rs518147) in the promoter region of the HTR2C gene using a sample of 180 UK ADHD probands and their parents. We have shown that the -697G allele was significantly over-transmitted to affected ADHD probands (P = 0.017). No association was detected between the C-759T polymorphism and ADHD. Haplotype analysis of the two markers revealed no significantly increased transmission of any haplotype to ADHD., Conclusion: The findings provide evidence that the G-allele of the G-697C HTR2C polymorphism may be involved in the development of ADHD. The results replicate one of the findings published recently.
- Published
- 2009
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.