92 results on '"Illi B"'
Search Results
2. Transcriptionally active drugs improve adenovirus vector performance in vitro and in vivo
- Author
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Gaetano, C, Catalano, A, Palumbo, R, Illi, B, Orlando, G, Ventoruzzo, G, Serino, F, and Capogrossi, M C
- Published
- 2000
- Full Text
- View/download PDF
3. The Protein Arginine Methyltransferases 1 and 5 affect Myc properties in glioblastoma stem cells
- Author
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Favia, A., Salvatori, L., Nanni, Simona, Iwamoto-Stohl, L. K., Valente, S., Mai, A., Scagnoli, F., Fontanella, R. A., Totta, P., Nasi, S., Illi, B., Nanni S. (ORCID:0000-0002-3320-1584), Favia, A., Salvatori, L., Nanni, Simona, Iwamoto-Stohl, L. K., Valente, S., Mai, A., Scagnoli, F., Fontanella, R. A., Totta, P., Nasi, S., Illi, B., and Nanni S. (ORCID:0000-0002-3320-1584)
- Abstract
Protein Arginine (R) methylation is the most common post-translational methylation in mammalian cells. Protein Arginine Methyltransferases (PRMT) 1 and 5 dimethylate their substrates on R residues, asymmetrically and symmetrically, respectively. They are ubiquitously expressed and play fundamental roles in tumour malignancies, including glioblastoma multiforme (GBM) which presents largely deregulated Myc activity. Previously, we demonstrated that PRMT5 associates with Myc in GBM cells, modulating, at least in part, its transcriptional properties. Here we show that Myc/PRMT5 protein complex includes PRMT1, in both HEK293T and glioblastoma stem cells (GSCs). We demonstrate that Myc is both asymmetrically and symmetrically dimethylated by PRMT1 and PRMT5, respectively, and that these modifications differentially regulate its stability. Moreover, we show that the ratio between symmetrically and asymmetrically dimethylated Myc changes in GSCs grown in stem versus differentiating conditions. Finally, both PRMT1 and PRMT5 activity modulate Myc binding at its specific target promoters. To our knowledge, this is the first work reporting R asymmetrical and symmetrical dimethylation as novel Myc post-translational modifications, with different functional properties. This opens a completely unexplored field of investigation in Myc biology and suggests symmetrically dimethylated Myc species as novel diagnostic and prognostic markers and druggable therapeutic targets for GBM.
- Published
- 2019
4. New targets for hepatocellular carcinoma therapy: the Myc/PRMT5/RNAP II circuit
- Author
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Porcu, C., primary, Illi, B., additional, Nasi, S., additional, Tavolaro, S., additional, and Balsano, C., additional
- Published
- 2018
- Full Text
- View/download PDF
5. Hypomorphic Recessive Variants in SUFU Impair the Sonic Hedgehog Pathway and Cause Joubert Syndrome with Cranio-facial and Skeletal Defects.
- Author
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Mori, R. de, Romani, M., D'Arrigo, S., Zaki, M.S., Lorefice, E., Tardivo, S., Biagini, T., Stanley, V., Musaev, D., Fluss, J., Micalizzi, A., Nuovo, S., Illi, B., Chiapparini, L., Marcotullio, L. Di, Issa, M.Y., Anello, D., Casella, A., Ginevrino, M., Leggins, A.S., Roosing, S., Alfonsi, R., Rosati, J., Schot, R., Mancini, G.M.S., Bertini, E., Dobyns, W.B., Mazza, T., Gleeson, J.G., Valente, E.M., Mori, R. de, Romani, M., D'Arrigo, S., Zaki, M.S., Lorefice, E., Tardivo, S., Biagini, T., Stanley, V., Musaev, D., Fluss, J., Micalizzi, A., Nuovo, S., Illi, B., Chiapparini, L., Marcotullio, L. Di, Issa, M.Y., Anello, D., Casella, A., Ginevrino, M., Leggins, A.S., Roosing, S., Alfonsi, R., Rosati, J., Schot, R., Mancini, G.M.S., Bertini, E., Dobyns, W.B., Mazza, T., Gleeson, J.G., and Valente, E.M.
- Abstract
Contains fulltext : 182760.pdf (publisher's version ) (Open Access)
- Published
- 2017
6. Hypomorphic Recessive Variants in SUFU Impair the Sonic Hedgehog Pathway and Cause Joubert Syndrome with Cranio-facial and Skeletal Defects
- Author
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De Mori, R. (Roberta), Romani, M. (Marta), D'Arrigo, S. (Stefano), Zaki, M.S. (Maha), Lorefice, E. (Elisa), Tardivo, S. (Silvia), Biagini, T. (Tommaso), Stanley, V. (Valentina), Musaev, D. (Damir), Fluss, J. (Joel), Micalizzi, A. (Alessia), Nuovo, S. (Sara), Illi, B. (Barbara), Chiapparini, L. (Luisa), Di Marcotullio, L. (Lucia), Issa, M.Y. (Mahmoud Y.), Anello, D. (Danila), Casella, A. (Antonella), Ginevrino, M. (Monia), Leggins, A.S. (Autumn Sa'na), Roosing, S. (Susanne), Alfonsi, R. (Romina), Rosati, J. (Jessica), Schot, R. (Rachel), Mancini, G.M.S. (Grazia), Bertini, E. (Enrico), Dobyns, W.B. (William), Mazza, T. (Tommaso), Gleeson, J.G. (Joseph G.), Valente, J. (José), De Mori, R. (Roberta), Romani, M. (Marta), D'Arrigo, S. (Stefano), Zaki, M.S. (Maha), Lorefice, E. (Elisa), Tardivo, S. (Silvia), Biagini, T. (Tommaso), Stanley, V. (Valentina), Musaev, D. (Damir), Fluss, J. (Joel), Micalizzi, A. (Alessia), Nuovo, S. (Sara), Illi, B. (Barbara), Chiapparini, L. (Luisa), Di Marcotullio, L. (Lucia), Issa, M.Y. (Mahmoud Y.), Anello, D. (Danila), Casella, A. (Antonella), Ginevrino, M. (Monia), Leggins, A.S. (Autumn Sa'na), Roosing, S. (Susanne), Alfonsi, R. (Romina), Rosati, J. (Jessica), Schot, R. (Rachel), Mancini, G.M.S. (Grazia), Bertini, E. (Enrico), Dobyns, W.B. (William), Mazza, T. (Tommaso), Gleeson, J.G. (Joseph G.), and Valente, J. (José)
- Abstract
The Sonic Hedgehog (SHH) pathway is a key signaling pathway orchestrating embryonic development, mainly of the CNS and limbs. In vertebrates, SHH signaling is mediated by the primary cilium, and genetic defects affecting either SHH pathway members or ciliary proteins cause a spectrum of developmental disorders. SUFU is the main negative regulator of the SHH pathway and is essential during development. Indeed, Sufu knock-out is lethal in mice, and recessive pathogenic variants of this gene have never been reported in humans. Through whole-exome sequencing in subjects with Joubert syndrome, we identified four children from two unrelated families carrying homozygous missense variants in SUFU. The children presented congenital ataxia and cerebellar vermis hypoplasia with elongated superior cerebellar peduncles (mild "molar tooth sign"), typical cranio-facial dysmorphisms (hypertelorism, depressed nasal bridge, frontal bossing), and postaxial polydactyly. Two siblings also showed polymicrogyria. Molecular dynamics simulation predicted random movements of the mutated residues, with loss of the native enveloping movement of the binding site around its ligand GLI3. Functional studies on cellular models and fibroblasts showed that both variants significantly reduced SUFU stability and its capacity to bind GLI3 and promote its cleavage into the repressor form GLI3R. In turn, this impaired SUFU-mediated repression of the SHH pathway, as shown by altered expression levels of several target genes. We demonstrate that germline hypomorphic variants of SUFU cause deregulation of SHH signaling, resulting in recessive developmental defects of the CNS and limbs which share features with both SHH-related disorders and ciliopathies.
- Published
- 2017
- Full Text
- View/download PDF
7. The Strategy of Fighting MYC Activity to Hinder Hepatocellular Carcinoma
- Author
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Porcu, C., primary, Barbaro, B., additional, Nasi, S., additional, Illi, B., additional, Pontisso, P., additional, and Balsano, C., additional
- Published
- 2016
- Full Text
- View/download PDF
8. Myc and Omomyc functionally associate with the Protein Arginine Methyltransferase 5 (PRMT5) in glioblastoma cells
- Author
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Mongiardi, Mp, Savino, M, Bartoli, L, Beji, S, Nanni, Simona, Scagnoli, F, Falchetti, Ml, Favia, A, Farsetti, A, Levi, A, Nasi, S, Illi, B., Nanni, Simona (ORCID:0000-0002-3320-1584), Mongiardi, Mp, Savino, M, Bartoli, L, Beji, S, Nanni, Simona, Scagnoli, F, Falchetti, Ml, Favia, A, Farsetti, A, Levi, A, Nasi, S, Illi, B., and Nanni, Simona (ORCID:0000-0002-3320-1584)
- Abstract
The c-Myc protein is dysregulated in many human cancers and its function has not been fully elucitated yet. The c-Myc inhibitor Omomyc displays potent anticancer properties in animal models. It perturbs the c-Myc protein network, impairs c-Myc binding to the E-boxes, retaining transrepressive properties and inducing histone deacetylation. Here we have employed Omomyc to further analyse c-Myc activity at the epigenetic level. We show that both Myc and Omomyc stimulate histone H4 symmetric dimethylation of arginine (R) 3 (H4R3me2s), in human glioblastoma and HEK293T cells. Consistently, both associated with protein Arginine Methyltransferase 5 (PRMT5)-the catalyst of the reaction-and its co-factor Methylosome Protein 50 (MEP50). Confocal experiments showed that Omomyc co-localized with c-Myc, PRMT5 and H4R3me2s-enriched chromatin domains. Finally, interfering with PRMT5 activity impaired target gene activation by Myc whereas it restrained Omomyc-dependent repression. The identification of a histone-modifying complex associated with Omomyc represents the first demonstration of an active role of this miniprotein in modifying chromatin structure and adds new information regarding its action on c-Myc targets. More importantly, the observation that c-Myc may recruit PRMT5-MEP50, inducing H4R3 symmetric di-methylation, suggests previously unpredictable roles for c-Myc in gene expression regulation and new potential targets for therapy.
- Published
- 2015
9. SAT-185 - New targets for hepatocellular carcinoma therapy: the Myc/PRMT5/RNAP II circuit
- Author
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Porcu, C., Illi, B., Nasi, S., Tavolaro, S., and Balsano, C.
- Published
- 2018
- Full Text
- View/download PDF
10. Smad-interacting protein-1 and microRNA 200 family define a nitric oxide-dependent molecular circuitry involved in embryonic stem cell mesendoderm differentiation
- Author
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Rosati J., Spallotta F., Grasselli A., Antonini A., Vincentie S., Presutti C, Nanni S., Farsetti A., Capogrossi M.C., Illi B., and Gaetano C.
- Subjects
epigenetics ,microRNA ,biology ,nitric oxide ,molecular biology ,vascular biology ,differentiation ,developmental gene expression - Abstract
OBJECTIVE: Smad-interacting protein-1 (Sip1/ZEB2) is a transcriptional repressor of the telomerase reverse transcriptase catalytic subunit (Tert) and has recently been identified as a key regulator of embryonic cell fate with a phenotypic effect similar, in our opinion, to that reported for nitric oxide (NO). Remarkably, SIP1/ZEB2 is a known target of the microRNA 200 (miR-200) family. In this light, we postulated that Sip1/ZEB2 and the miR-200 family could play a role during the NO-dependent differentiation of mES. METHODS AND RESULTS: The results of the present study show that Sip1/ZEB2 expression is downregulated during the NO-dependent expression of mesendoderm and early cardiovascular precursor markers, including Flk1 and CXCR4 in mES. Coincidently, members of the miR-200 family, namely miR-429, -200a, -200b, and -200c, were transcriptionally induced in parallel to mouse Tert. This regulation occurred at the level of chromatin. Remarkably, miR-429/miR-200a overexpression or Sip1/ZEB2 knockdown by short hairpin RNA interference elicited a gene expression pattern similar to that of NO regardless of the presence of leukemia inhibitory factor. CONCLUSIONS: These results are the first demonstrating that the miR-200 family and Sip1/ZEB2 transcription factor are regulated by NO, indicating an unprecedented molecular circuitry important for telomerase regulation and early differentiation of mES.
- Published
- 2011
11. Mutations in TMEM'16 perturb ciliogenesis and cause Joubert. Meckel and related syndromes
- Author
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Valente, E. M., Logan, Cv, Mougou Zerelli, S., Lee, J. H., Silhavy, J. L., Brancati, F., Iannicelli, M., Travaglini, L., Romani, S., Illi, B., Adams, M., Szymanska, K., Mazzotta, A., Lee, J. E., Tolentino, J. C., Swistun, D., SALPIETRO DAMIANO, Carmelo, and Fede, Carmelo Mario
- Published
- 2010
12. Endothelial NOS, estrogen receptor beta, and HIFs cooperate in the activation of a prognostic transcriptional pattern in aggressive human prostate cancer
- Author
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Nanni, Simona, Benvenuti, V, Grasselli, A, Priolo, Carmen, Aiello, A, Mattiussi, S, Colussi, C, Lirangi, V, Illi, B, D'Eletto, M, Cianciulli, Am, Gallucci, M, De Carli, P, Sentinelli, S, Mottolese, M, Carlini, P, Stringari, L, Finn, S, Mueller, E, Arcangeli, G, Gaetano, C, Capogrossi, Mc, Donnorso, Rp, Bacchetti, S, Sacchi, A, Pontecorvi, Alfredo, Loda, M, and Farsetti, Antonella
- Subjects
prostater cancer ,Settore MED/13 - ENDOCRINOLOGIA - Published
- 2009
13. NO sparks off chromatin: tales of a multifaceted epigenetic regulator
- Author
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Illi B. a), Colussi C. a), Grasselli A. b),c), Farsetti A. c), Capogrossi M.C. d), and Gaetano C. d)
- Subjects
Chromatin remodeling ,Nitric oxide ,Gene expression ,Tyr-nitration ,S-nitrosylation - Abstract
The discovery of nitric oxide (NO) revealed its ambiguous nature, which is related to its pleiotropic activities that control the homeostasis of every organism from bacteria to mammals in several physiological and pathological situations. The wide range of action of NO basically depends on two features: 1) the variety of chemical reactions depending on NO, and 2) the differential cellular responses elicited by distinct NO concentrations. Despite the increasing body of knowledge regarding its chemistry, biology and NO-dependent signaling pathways, little information is available on the nuclear actions of NO in terms of gene expression regulation. Indeed, studies of a putative role for this diatomic compound in regulating chromatin remodeling are still in their infancy. Only recently has the role of NO in epigenetics emerged, and some of its putative epigenetic properties are still only hypothetical. In the present review, we discuss the current evidence for NO-related mechanisms of epigenetic gene expression regulation. We link some of the well known NO chemical reactions and metabolic processes (e.g., S-nitrosylation of thiols, tyrosine nitration, cGMP production) to chromatin modification and address the most recent, striking hypothesis about NO and the control of chromosomes structure.
- Published
- 2009
14. Class II HDACs function is required during the nitric oxide-dependent early stage of embryonic stem cells cardiovascular differentiation
- Author
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Gaetano C., Illi B., Spallotta F., Rosati J. Mattiussi S., Nanni S., Rotili D., Valente S., Pallaoro M., Steinkuler C., Gallinari P., Mai A., Farsetti A., and Capogrossi M.C.
- Published
- 2007
15. Trascriptional prognostic signature in prostate cancer: cross talk between estrogen receptors and hypoxia inducible factors
- Author
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Nanni S., Benvenuti V., Grasselli A., Aiello A., Priolo C., Mattiussi S., Illi B., Gallucci M., De Carli P., Sentinelli S., Mottolese M., Carlini P., Gaetano C., Capogrossi M.C., Bacchetti S., Sacchi A., Pontecorvi A., Loda M., and Farsetti A.
- Published
- 2007
16. Epigenetic Histone Modification and Cardiovascular Lineage Programming in Mouse Embryonic Stem Cells Exposed to Laminar Shear Stress
- Author
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Illi B., Scopece A., Nanni S., Farsetti A., Morgante L., Biglioli P., Capogrossi M.C., and Gaetano C.
- Subjects
flow ,chromatin ,differentiation ,embryonic stem cell ,shear stress - Abstract
Experimental evidence indicates that shear stress (SS) exerts a morphogenetic function during cardiac development of mouse and zebrafish embryos. However, the molecular basis for this effect is still elusive. Our previous work described that in adult endothelial cells, SS regulates gene expression by inducing epigenetic modification of histones and activation of transcription complexes bearing acetyltransferase activity. In this study, we evaluated whether SS treatment could epigenetically modify histones and influence cell differentiation in mouse embryonic stem (ES) cells. Cells were exposed to a laminar SS of 10 dyne per cm2/s(-1), or kept in static conditions in the presence or absence of the histone deacetylase inhibitor trichostatin A (TSA). These experiments revealed that SS enhanced lysine acetylation of histone H3 at position 14 (K14), as well as serine phosphorylation at position 10 (S10) and lysine methylation at position 79 (K79), and cooperated with TSA, inducing acetylation of histone H4 and phosphoacetylation of S10 and K14 of histone H3. In addition, ES cells exposed to SS strongly activated transcription from the vascular endothelial growth factor (VEGF) receptor 2 promoter. This effect was paralleled by an early induction of cardiovascular markers, including smooth muscle actin, smooth muscle protein 22-alpha, platelet-endothelial cell adhesion molecule-1, VEGF receptor 2, myocyte enhancer factor-2C (MEF2C), and alpha-sarcomeric actin. In this condition, transcription factors MEF2C and Sma/MAD homolog protein 4 could be isolated from SS-treated ES cells complexed with the cAMP response element-binding protein acetyltransferase. These results provide molecular basis for the SS-dependent cardiovascular commitment of mouse ES cells and suggest that laminar flow may be successfully applied for the in vitro production of cardiovascular precursors.
- Published
- 2005
17. Chromatin remodeling by biomechanical stimuli: molecular basis for blood flow-dependent regulation of gene expression in human endothelial cells
- Author
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Illi B., Nanni S., Scopece A., Farsetti A., Biglioli P., Capogrossi M.C., and Gaetano C.
- Published
- 2004
18. Shear Stress-Mediated Chromatin Remodeling Provides Molecular Basis for Flow-Dependent Regulation of Gene Expression
- Author
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Illi B., Nanni S., Scopece A., Farsetti A., Biglioli P., Capogrossi M.C., and Gaetano C.
- Abstract
Shear stress (SS), the tangential component of hemodynamic forces, modulates the expression of several genes in endothelial cells. However, no information is available about its effect on chromatin structure, which plays a key role in gene transcription. In this study, a link between SS and chromatin remodeling was established in human umbilical vein endothelial cells (HUVECs). HUVECs were exposed to SS of 10 dyne/cm2 per second, in the presence or absence of the histone deacetylase inhibitor trichostatin A, and assayed for histone H3 and histone H4 modifications. SS induced histone H3 serine phosphorylation at position 10 (S10) and lysine acetylation at position 14 (K14) but required trichostatin A to induce H3 phosphoacetylation and H4 acetylation. The phosphatidylinositol 3-kinase inhibitor wortmannin and the mitogen-activated protein kinase inhibitor PD98059 decreased SS-dependent histone H3 phosphorylation, without affecting its acetylation; the p38 inhibitor SB203580 reduced both H3 phosphorylation and acetylation, whereas the protein kinase A inhibitor PKI-tide reduced histone H3 acetylation. Remarkably, the abrogation of histone acetylation inhibited SS-dependent c-fos expression. SS also activated ribosomal S6 kinase-2 and mitogen- and stress-activated kinase-1 protein kinases and promoted the formation of a cAMP-responsive element-binding protein (CREB)/CREB-binding protein complex, providing the molecular basis for the increase in histone acetyltransferase activity observed in HUVECs exposed to SS. Finally, the effect of SS on chromatin remodeling was examined. In HUVECs exposed to SS, chromatin within c-fos and c-jun promoters was specifically immunoprecipitated by an antibody against acetylated histone H3 on K14. These results indicate that SS induces posttransduction modifications of histones; this is an early step toward the flow-dependent regulation of gene expression.
- Published
- 2003
19. NGF-inducible and tissue-specific transcription of VGF is regulated by CREB-p300 and bhlh factor interaction
- Author
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Maldolesi G., Gargano S., Pennuto M., Illi B., Molfetta R., Soucek L., Mosca L., Levi A., and Jucker R.. Nasi S.
- Published
- 2002
20. NO points to epigenetics in vascular development
- Author
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Illi, B, Colussi, C, Rosati, J, Spallotta, F, Nanni, Simona, Farsetti, A, Capogrossi, Mc, Gaetano, C., Nanni, Simona (ORCID:0000-0002-3320-1584), Illi, B, Colussi, C, Rosati, J, Spallotta, F, Nanni, Simona, Farsetti, A, Capogrossi, Mc, Gaetano, C., and Nanni, Simona (ORCID:0000-0002-3320-1584)
- Abstract
Our understanding of epigenetic mechanisms important for embryonic vascular development and cardiovascular differentiation is still in its infancy. Although molecular analyses, including massive genome sequencing and/or in vitro/in vivo targeting of specific gene sets, has led to the identification of multiple factors involved in stemness maintenance or in the early processes of embryonic layers specification, very little is known about the epigenetic commitment to cardiovascular lineages. The object of this review will be to outline the state of the art in this field and trace the perspective therapeutic consequences of studies aimed at elucidating fundamental epigenetic networks. Special attention will be paid to the emerging role of nitric oxide in this field.
- Published
- 2011
21. Smad-interacting protein-1 and microRNA 200 family define a nitric oxide-dependent molecular circuitry involved in embryonic stem cell mesendoderm differentiation
- Author
-
Rosati, J, Spallotta, F, Nanni, Simona, Grasselli, A, Antonini, A, Vincenti, S, Presutti, C, Colussi, C, D'Angelo, C, Biroccio, A, Farsetti, A, Capogrossi, Mc, Illi, B, Gaetano, C., Nanni, Simona (ORCID:0000-0002-3320-1584), Rosati, J, Spallotta, F, Nanni, Simona, Grasselli, A, Antonini, A, Vincenti, S, Presutti, C, Colussi, C, D'Angelo, C, Biroccio, A, Farsetti, A, Capogrossi, Mc, Illi, B, Gaetano, C., and Nanni, Simona (ORCID:0000-0002-3320-1584)
- Abstract
Smad-interacting protein-1 (Sip1/ZEB2) is a transcriptional repressor of the telomerase reverse transcriptase catalytic subunit (Tert) and has recently been identified as a key regulator of embryonic cell fate with a phenotypic effect similar, in our opinion, to that reported for nitric oxide (NO). Remarkably, SIP1/ZEB2 is a known target of the microRNA 200 (miR-200) family. In this light, we postulated that Sip1/ZEB2 and the miR-200 family could play a role during the NO-dependent differentiation of mES. METHODS AND RESULTS: The results of the present study show that Sip1/ZEB2 expression is downregulated during the NO-dependent expression of mesendoderm and early cardiovascular precursor markers, including Flk1 and CXCR4 in mES. Coincidently, members of the miR-200 family, namely miR-429, -200a, -200b, and -200c, were transcriptionally induced in parallel to mouse Tert. This regulation occurred at the level of chromatin. Remarkably, miR-429/miR-200a overexpression or Sip1/ZEB2 knockdown by short hairpin RNA interference elicited a gene expression pattern similar to that of NO regardless of the presence of leukemia inhibitory factor. CONCLUSIONS: These results are the first demonstrating that the miR-200 family and Sip1/ZEB2 transcription factor are regulated by NO, indicating an unprecedented molecular circuitry important for telomerase regulation and early differentiation of mES.
- Published
- 2011
22. FRI-041 - The Strategy of Fighting MYC Activity to Hinder Hepatocellular Carcinoma
- Author
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Porcu, C., Barbaro, B., Nasi, S., Illi, B., Pontisso, P., and Balsano, C.
- Published
- 2016
- Full Text
- View/download PDF
23. Nitric oxide determines mesodermic differentiation of mouse embryonic stem cells by activating class IIa histone deacetylases: potential therapeutic implications in a mouse model of hindlimb ischemia
- Author
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Spallotta, F, Rosati, J, Straino, S, Nanni, Simona, Grasselli, A, Ambrosino, V, Rotili, D, Valente, S, Farsetti, A, Mai, A, Capogrossi, Mc, Gaetano, C, Illi, B., Nanni, Simona (ORCID:0000-0002-3320-1584), Spallotta, F, Rosati, J, Straino, S, Nanni, Simona, Grasselli, A, Ambrosino, V, Rotili, D, Valente, S, Farsetti, A, Mai, A, Capogrossi, Mc, Gaetano, C, Illi, B., and Nanni, Simona (ORCID:0000-0002-3320-1584)
- Abstract
In human endothelial cells, nitric oxide (NO) results in class IIa histone deacetylases (HDACs) activation and marked histone deacetylation. It is unknown whether similar epigenetic events occur in embryonic stem cells (ESC) exposed to NO and how this treatment could influence ESC therapeutic potential during tissue regeneration.This study reports that the NO-dependent class IIa HDACs subcellular localization and activity decreases the global acetylation level of H3 histones in ESC and that this phenomenon is associated with the inhibition of Oct4, Nanog, and KLF4 expression. Further, a NO-induced formation of macromolecular complexes including HDAC3, 4, 7, and protein phosphatase 2A (PP2A) have been detected. These processes correlated with the expression of the mesodermal-specific protein brachyury (Bry) and the appearance of several vascular and skeletal muscle differentiation markers. These events were abolished by the class IIa-specific inhibitor MC1568 and by HDAC4 or HDAC7 short interfering RNA (siRNA). The ability of NO to induce mesodermic/cardiovascular gene expression prompted us to evaluate the regenerative potential of these cells in a mouse model of hindlimb ischemia. We found that NO-treated ESCs injected into the cardiac left ventricle selectively localized in the ischemic hindlimb and contributed to the regeneration of muscular and vascular structures. These findings establish a key role for NO and class IIa HDACs modulation in ESC mesodermal commitment and enhanced regenerative potential in vivo.
- Published
- 2010
24. The ciliary protein Meckelin/TMEM67 interacts with HDAC6: possible implications for primary cilia stability
- Author
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De Mori, R, primary, Illi, B, additional, Romani, S, additional, Valente, S, additional, Johnson, CA, additional, Mai, A, additional, and Valente, EM, additional
- Published
- 2012
- Full Text
- View/download PDF
25. The ciliary proteins Meckelin and Jouberin are required for retinoic acid-dependent neural differentiation of mouse embryonic stem cells
- Author
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Romani, S, primary, Illi, B, additional, De Mori, R, additional, Gleeson, JG, additional, and Valente, EM, additional
- Published
- 2012
- Full Text
- View/download PDF
26. Analysis of the Myc and Max interaction with cI repressor-HLH domain fusions
- Author
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Marchetti, Alessandra, ABRIL MARTI, M, Illi, B, and Cesareni, G. NASI S.
- Published
- 1995
27. NO points to epigenetics in vascular development
- Author
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Illi, B., primary, Colussi, C., additional, Rosati, J., additional, Spallotta, F., additional, Nanni, S., additional, Farsetti, A., additional, Capogrossi, M. C., additional, and Gaetano, C., additional
- Published
- 2011
- Full Text
- View/download PDF
28. Papilloma protein E6 abrogates shear stress-dependent survival in human endothelial cells: Evidence for specialized functions of paxillin
- Author
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MATTIUSSI, S, primary, MATSUMOTO, K, additional, ILLI, B, additional, MARTELLI, F, additional, CAPOGROSSI, M, additional, and GAETANO, C, additional
- Published
- 2006
- Full Text
- View/download PDF
29. Post-traumatic superolateral temporo-mandibular dislocation with intact condyle: case series and literature review
- Author
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Zegbeh N'guessan Eric Kouassi, Djémi Ernest Martial, Bérété Pornan Issa Jules, Salami Tahib Arnaud, Yapo Assi Romaric Evrard, Illi Biévianda Vincent, and Crezoit Grébéret Emmanuel
- Subjects
superior ,lateral ,dislocation ,temporomandibular ,Dentistry ,RK1-715 ,Surgery ,RD1-811 - Abstract
Introduction: Supero-lateral temporomandibular dislocations with intact condyles are very rare, particularly in countries of sub-Saharan Africa where they are poorly documented. Materials and method: This was a retrospective study that included all patients received for superolateral temporomandibular dislocation with intact condyle following a maxillofacial trauma. The period covered by the study was from January 2011 to July 2021. Results: 3 patients were studied. According the classification of temporomandibular superolateral dislocation with intact condyle, the first patient had a Type II A, the second and the third patient, type II B. The manual reduction of the first patient luxation was unstable requiring an osteosynthesis of mandibular symphysis to stabilise the reduction of the temporomandibular dislocation. The second patient manual reduction was unsuccessful requiring an open reduction by preauricular approach. The third left against medical advice. Discussion: The occurrence of temporomandibular superolateral dislocation with intact condyle in an underdeveloped city like Bouaké, is not related to the density of road traffic but to the indiscipline of the many motorcyclists who do not wear helmets. Early reduction of the dislocation, early mobilisation of the joint and mechanotherapy positively influence the postoperative outcome.
- Published
- 2022
- Full Text
- View/download PDF
30. Interplay of the E box, the cyclic AMP response element, and HTF4/HEB in transcriptional regulation of the neurospecific, neurotrophin-inducible vgf gene
- Author
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Di Rocco, G, Pennuto, M, Illi, B, Canu, N, Filocamo, G, Trani, E, Rinaldi, A M, Possenti, R, Mandolesi, G, Sirinian, M I, Jucker, R, Levi, A, and Nasi, S
- Abstract
vgf is a neurotrophin response-specific, developmentally regulated gene that codes for a neurosecretory polypeptide. Its transcription in neuronal cells is selectively activated by the neurotrophins nerve growth factor (NGF), brain-derived neurotrophic factor, and neurotrophin 3, which induce survival and differentiation, and not by epidermal growth factor. We studied a short region of the rat vgf promoter which is essential for its regulated expression. A cyclic AMP response element (CRE) within this region is necessary for NGF induction of vgf transcription. Two sites upstream of CRE, an E box and a CCAAT sequence, bind nuclear protein complexes and are involved in transcriptional control. The E box has a dual role. It acts as an inhibitor in NIH 3T3 fibroblasts, together with a second E box located downstream, and as a stimulator in the NGF-responsive cell line PC12. By expression screening, we have isolated the cDNA for a basic helix-loop-helix transcription factor, a homolog of the HTF4/HEB E protein, that specifically binds the vgf promoter E box. The E protein was present in various cell lines, including PC12 cells, and was a component of a multiprotein nuclear complex that binds the promoter in vitro. The E box and CRE cooperate in binding to this complex, which may be an important determinant for neural cell-specific expression.
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- 1997
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31. Nuclear factor-kappa B and cAMP response element binding protein mediate opposite transcriptional effects on the Flk-1/KDR gene promoter
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Illi, B., Puri, P., Morgante, L., Capogrossi, M. C., and Carlo Gaetano
32. Role of histone acetyltransferases and deacetylases in atherosclerosis,Ruolo delle acetiltransferasi e deacetilasi istoniche nell'aterosclerosi
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Illi, B., Corrado Cirielli, Serino, F., Damia, S., Bandiera, G., Capogrossi, M., and Gaetano, C.
33. Retinoids induce fibroblast growth factor-2 production in endothelial cells via retinoic acid receptor alpha activation and stimulate angiogenesis in vitro and in vivo
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Gaetano, C., Catalano, A., Illi, B., Felici, A., Minucci, S., Palumbo, R., Francesco Facchiano, Mangoni, A., Mancarella, S., Mühlhauser, J., and Capogrossi, M. C.
34. HDAC2 blockade by nitric oxide and histone deacetylase inhibitors reveals a common target in Duchenne muscular dystrophy treatment
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Barbara Illi, Carmela Dell'Aversana, Stefania Straino, Annalisa Antonini, Chiara Mozzetta, Gianluca Ragone, Giulia Piaggio, Paola Gallinari, Claudia Colussi, Lucia Altucci, Maurizio C. Capogrossi, Emilio Clementi, Mario Pescatori, Pier Lorenzo Puri, Germana Zaccagnini, Carlo Gaetano, Christian Steinkühler, Jessica Rosati, Antonello Mai, Aymone Gurtner, Fabio Martelli, Giulia Minetti, Colussi, C, Mozzetta, C, Gurtner, A, Illi, B, Rosati, J, Straino, S, Ragone, G, Pescatori, M, Zaccagnini, G, Antonini, A, Minetti, G, Martelli, F, Piaggio, G, Gallinari, P, Steinkulher, C, Clementi, E, Dell'Aversana, C, Altucci, Lucia, Mai, A, Capogrossi, Mc, Puri, Pl, and Gaetano, C.
- Subjects
musculoskeletal diseases ,Satellite Cells, Skeletal Muscle ,Nitrogen ,Pyridines ,Duchenne muscular dystrophy ,Histone Deacetylase 2 ,Nitric Oxide ,Endothelial NOS ,Histone Deacetylases ,Epigenesis, Genetic ,Myoblasts ,Mice ,HDAC ,In vivo ,medicine ,Animals ,Enzyme Inhibitors ,RNA, Small Interfering ,Muscular dystrophy ,skeletal muscle ,Muscle, Skeletal ,Cells, Cultured ,Distrophy ,Multidisciplinary ,biology ,Histone deacetylase 2 ,epigenetic ,Biological Sciences ,Muscular Dystrophy, Animal ,medicine.disease ,Molecular biology ,Histone Deacetylase Inhibitors ,Mice, Inbred C57BL ,Muscular Dystrophy, Duchenne ,Repressor Proteins ,Benzamides ,Mice, Inbred mdx ,Cancer research ,biology.protein ,Histone deacetylase ,Dystrophin ,Deacetylase activity - Abstract
The overlapping histological and biochemical features underlying the beneficial effect of deacetylase inhibitors and NO donors in dystrophic muscles suggest an unanticipated molecular link among dystrophin, NO signaling, and the histone deacetylases (HDACs). Higher global deacetylase activity and selective increased expression of the class I histone deacetylase HDAC2 were detected in muscles of dystrophin-deficient MDX mice. In vitro and in vivo siRNA-mediated down-regulation of HDAC2 in dystrophic muscles was sufficient to replicate the morphological and functional benefits observed with deacetylase inhibitors and NO donors. We found that restoration of NO signaling in vivo, by adenoviral-mediated expression of a constitutively active endothelial NOS mutant in MDX muscles, and in vitro, by exposing MDX-derived satellite cells to NO donors, resulted in HDAC2 blockade by cysteine S-nitrosylation. These data reveal a special contribution of HDAC2 in the pathogenesis of Duchenne muscular dystrophy and indicate that HDAC2 inhibition by NO-dependent S-nitrosylation is important for the therapeutic response to NO donors in MDX mice. They also define a common target for independent pharmacological interventions in the treatment of Duchenne muscular dystrophy.
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- 2008
35. The Role of HDAC6 in Glioblastoma Multiforme: A New Avenue to Therapeutic Interventions?
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Spallotta F and Illi B
- Abstract
Despite the great advances in basic research results, glioblastoma multiforme (GBM) still remains an incurable tumour. To date, a GBM diagnosis is a death sentence within 15-18 months, due to the high recurrence rate and resistance to conventional radio- and chemotherapy approaches. The effort the scientific community is lavishing on the never-ending battle against GBM is reflected by the huge number of clinical trials launched, about 2003 on 10 September 2024. However, we are still far from both an in-depth comprehension of the biological and molecular processes leading to GBM onset and progression and, importantly, a cure. GBM is provided with high intratumoral heterogeneity, immunosuppressive capacity, and infiltrative ability due to neoangiogenesis. These features impact both tumour aggressiveness and therapeutic vulnerability, which is further limited by the presence in the tumour core of niches of glioblastoma stem cells (GSCs) that are responsible for the relapse of this brain neoplasm. Epigenetic alterations may both drive and develop along GBM progression and also rely on changes in the expression of the genes encoding histone-modifying enzymes, including histone deacetylases (HDACs). Among them, HDAC6-a cytoplasmic HDAC-has recently gained attention because of its role in modulating several biological aspects of GBM, including DNA repair ability, massive growth, radio- and chemoresistance, and de-differentiation through primary cilia disruption. In this review article, the available information related to HDAC6 function in GBM will be presented, with the aim of proposing its inhibition as a valuable therapeutic route for this deadly brain tumour.
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- 2024
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36. The COVID-19 legacy: consequences for the human DNA methylome and therapeutic perspectives.
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Gaetano C, Atlante S, Gottardi Zamperla M, Barbi V, Gentilini D, Illi B, Malavolta M, Martelli F, and Farsetti A
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The COVID-19 pandemic has left a lasting legacy on human health, extending beyond the acute phase of infection. This article explores the evidence suggesting that SARS-CoV-2 infection can induce persistent epigenetic modifications, particularly in DNA methylation patterns, with potential long-term consequences for individuals' health and aging trajectories. The review discusses the potential of DNA methylation-based biomarkers, such as epigenetic clocks, to identify individuals at risk for accelerated aging and tailor personalized interventions. Integrating epigenetic clock analysis into clinical management could mark a new era of personalized treatment for COVID-19, possibly helping clinicians to understand patient susceptibility to severe outcomes and establish preventive strategies. Several valuable reviews address the role of epigenetics in infectious diseases, including the Sars-CoV-2 infection. However, this article provides an original overview of the current understanding of the epigenetic dimensions of COVID-19, offering insights into the long-term health implications of the pandemic. While acknowledging the limitations of current data, we emphasize the need for future research to unravel the precise mechanisms underlying COVID-19-induced epigenetic changes and to explore potential approaches to target these modifications., (© 2024. The Author(s).)
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- 2024
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37. HDAC6 inhibition disrupts HDAC6-P300 interaction reshaping the cancer chromatin landscape.
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Zamperla MG, Illi B, Barbi V, Cencioni C, Santoni D, Gagliardi S, Garofalo M, Zingale GA, Pandino I, Sbardella D, Cipolla L, Sabbioneda S, Farsetti A, Ripamonti C, Fossati G, Steinkühler C, Gaetano C, and Atlante S
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- Humans, Cell Line, Tumor, Acetylation drug effects, Neoplasms drug therapy, Neoplasms genetics, E1A-Associated p300 Protein genetics, E1A-Associated p300 Protein metabolism, Gene Expression Regulation, Neoplastic drug effects, Cell Proliferation drug effects, Cell Proliferation genetics, Histones metabolism, Ubiquitination drug effects, Histone Deacetylase 6 genetics, Histone Deacetylase 6 antagonists & inhibitors, Chromatin genetics, Chromatin drug effects, Histone Deacetylase Inhibitors pharmacology
- Abstract
Background: Histone deacetylases (HDACs) are crucial regulators of gene expression, DNA synthesis, and cellular processes, making them essential targets in cancer research. HDAC6, specifically, influences protein stability and chromatin dynamics. Despite HDAC6's potential therapeutic value, its exact role in gene regulation and chromatin remodeling needs further clarification. This study examines how HDAC6 inactivation influences lysine acetyltransferase P300 stabilization and subsequent effects on chromatin structure and function in cancer cells., Methods and Results: We employed the HDAC6 inhibitor ITF3756, siRNA, or CRISPR/Cas9 gene editing to inactivate HDAC6 in different epigenomic backgrounds. Constantly, this inactivation led to significant changes in chromatin accessibility, particularly increased acetylation of histone H3 lysines 9, 14, and 27 (ATAC-seq and H3K27Ac ChIP-seq analysis). Transcriptomics, proteomics, and gene ontology analysis revealed gene changes in cell proliferation, adhesion, migration, and apoptosis. Significantly, HDAC6 inactivation altered P300 ubiquitination, stabilizing P300 and leading to downregulating genes critical for cancer cell survival., Conclusions: Our study highlights the substantial impact of HDAC6 inactivation on the chromatin landscape of cancer cells and suggests a role for P300 in contributing to the anticancer effects. The stabilization of P300 with HDAC6 inhibition proposes a potential shift in therapeutic focus from HDAC6 itself to its interaction with P300. This finding opens new avenues for developing targeted cancer therapies, improving our understanding of epigenetic mechanisms in cancer cells., (© 2024. The Author(s).)
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- 2024
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38. Evaluation of soluble suppression of tumorigenicity 2 (sST2) as serum marker for liver fibrosis.
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Hildenbrand FF, Illi B, von Felten S, Bachofner J, Gawinecka J, von Eckardstein A, Müllhaupt B, Mertens JC, and Blümel S
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- Humans, Cohort Studies, Aspartate Aminotransferases, Liver Cirrhosis, Liver pathology, Biomarkers, Hepatitis C, Chronic complications, Hepatitis C, Chronic drug therapy, Hepatitis C, Chronic pathology, Elasticity Imaging Techniques
- Abstract
Background & Aims: With the increase in patients at risk of advanced liver disease due to the obesity epidemic, there will be a need for simple screening tools for advanced liver fibrosis. Soluble suppression of tumorigenicity 2 (sST2) is a serum biomarker for fibrotic processes. The aim of this study was to evaluate sST2 as marker for liver fibrosis in patients successfully treated for chronic hepatitis C., Methods: 424 patients from the Swiss Hepatitis C Cohort Study were screened for inclusion in this post-hoc cohort study. Inclusion criteria were sustained virological response (SVR), available elastography (VCTE) and serum samples for biomarker analysis before and after treatment. For the validation of sST2, values were compared to VCTE, FIB-4 and APRI using Spearman's correlation and AUROC analyses., Results: Data of 164 subjects were finally analyzed. Median sST2 values slightly increased with VCTE-derived fibrosis stages and remained stable after reaching SVR within the respective fibrosis stage, suggesting that sST2 is not influenced by liver inflammation. However, correlation of sST2 pre- and post-treatment with VCTE was fair (Spearman's rho = 0.39 and rho = 0.36). The area under the curve (AUROC) for sST2 in detecting VCTE-defined F4 fibrosis (vs. F0-F3) before therapy was 0.74 (95%CI 0.65-0.83), and 0.67(95%CI 0.56-0.78) for the discrimination of F3/F4 fibrosis vs. F0-F2. Adding sST2 to either APRI or FIB-4, respectively, increased diagnostic performance of both tests., Conclusions: sST2 can potentially identify patients with advanced fibrosis as a single serum marker and in combination with APRI and FIB-4., (© 2024. The Author(s).)
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- 2024
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39. Myc beyond Cancer: Regulation of Mammalian Tissue Regeneration.
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Illi B and Nasi S
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Myc is one of the most well-known oncogenes driving tumorigenesis in a wide variety of tissues. From the brain to blood, its deregulation derails physiological pathways that grant the correct functioning of the cell. Its action is carried out at the gene expression level, where Myc governs basically every aspect of transcription. Indeed, in addition to its role as a canonical, chromatin-bound transcription factor, Myc rules RNA polymerase II (RNAPII) transcriptional pause-release, elongation and termination and mRNA capping. For this reason, it is evident that minimal perturbations of Myc function mirror malignant cell behavior and, consistently, a large body of literature mainly focuses on Myc malfunctioning. In healthy cells, Myc controls molecular mechanisms involved in pivotal functions, such as cell cycle (and proliferation thereof), apoptosis, metabolism and cell size, angiogenesis, differentiation and stem cell self-renewal. In this latter regard, Myc has been found to also regulate tissue regeneration, a hot topic in the research fields of aging and regenerative medicine. Indeed, Myc appears to have a role in wound healing, in peripheral nerves and in liver, pancreas and even heart recovery. Herein, we discuss the state of the art of Myc's role in tissue regeneration, giving an overview of its potent action beyond cancer.
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- 2023
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40. How epigenetics impacts on human diseases.
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Farsetti A, Illi B, and Gaetano C
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- Humans, Epigenesis, Genetic, DNA Methylation, Neoplasms genetics
- Abstract
Epigenetics is a rapidly growing field of biology that studies the changes in gene expression that are not due to alterations in the DNA sequence but rather the chemical modifications of DNA and its associated proteins. Epigenetic mechanisms can profoundly influence gene expression, cell differentiation, tissue development, and disease susceptibility. Understanding epigenetic changes is essential to elucidate the mechanisms underlying the increasingly recognized role of environmental and lifestyle factors in health and disease and the intergenerational transmission of phenotypes. Recent studies suggest epigenetics may be critical in various diseases, from cardiovascular disease and cancer to neurodevelopmental and neurodegenerative disorders. Epigenetic modifications are potentially reversible and could provide new therapeutic avenues for treating these diseases using epigenetic modulators. Moreover, epigenetics provide insight into disease pathogenesis and biomarkers for disease diagnosis and risk stratification. Nevertheless, epigenetic interventions have the potential for unintended consequences and may potentially lead to increased risks of unexpected outcomes, such as adverse drug reactions, developmental abnormalities, and cancer. Therefore, rigorous studies are essential to minimize the risks associated with epigenetic therapies and to develop safe and effective interventions for improving human health. This article provides a synthetic and historical view of the origin of epigenetics and some of the most relevant achievements., Competing Interests: Declaration of Competing Interest The authors declare no conflict of interest, (Copyright © 2023. Published by Elsevier B.V.)
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- 2023
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41. Nitric Oxide Prevents Glioblastoma Stem Cells' Expansion and Induces Temozolomide Sensitization.
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Salvatori L, Malatesta S, Illi B, Somma MP, Fionda C, Stabile H, Fontanella RA, and Gaetano C
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- Humans, Temozolomide therapeutic use, Nitric Oxide metabolism, Dacarbazine therapeutic use, Cell Line, Tumor, Cell Proliferation, Cell Cycle, Stem Cells metabolism, Drug Resistance, Neoplasm, Neoplastic Stem Cells metabolism, Antineoplastic Agents, Alkylating pharmacology, Antineoplastic Agents, Alkylating therapeutic use, Glioblastoma metabolism, Brain Neoplasms metabolism
- Abstract
Glioblastoma multiforme (GBM) has high mortality and recurrence rates. Malignancy resilience is ascribed to Glioblastoma Stem Cells (GSCs), which are resistant to Temozolomide (TMZ), the gold standard for GBM post-surgical treatment. However, Nitric Oxide (NO) has demonstrated anti-cancer efficacy in GBM cells, but its potential impact on GSCs remains unexplored. Accordingly, we investigated the effects of NO, both alone and in combination with TMZ, on patient-derived GSCs. Experimentally selected concentrations of diethylenetriamine/NO adduct and TMZ were used through a time course up to 21 days of treatment, to evaluate GSC proliferation and death, functional recovery, and apoptosis. Immunofluorescence and Western blot analyses revealed treatment-induced effects in cell cycle and DNA damage occurrence and repair. Our results showed that NO impairs self-renewal, disrupts cell-cycle progression, and expands the quiescent cells' population. Consistently, NO triggered a significant but tolerated level of DNA damage, but not apoptosis. Interestingly, NO/TMZ cotreatment further inhibited cell cycle progression, augmented G0 cells, induced cell death, but also enhanced DNA damage repair activity. These findings suggest that, although NO administration does not eliminate GSCs, it stunts their proliferation, and makes cells susceptible to TMZ. The resulting cytostatic effect may potentially allow long-term control over the GSCs' subpopulation.
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- 2023
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42. The "Superoncogene" Myc at the Crossroad between Metabolism and Gene Expression in Glioblastoma Multiforme.
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Cencioni C, Scagnoli F, Spallotta F, Nasi S, and Illi B
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- Adult, Humans, Proto-Oncogene Proteins c-myc metabolism, Cell Line, Tumor, Chromatin, Gene Expression, Gene Expression Regulation, Neoplastic, Cell Proliferation, Glioblastoma metabolism, Brain Neoplasms metabolism
- Abstract
The concept of the Myc (c-myc, n-myc, l-myc) oncogene as a canonical, DNA-bound transcription factor has consistently changed over the past few years. Indeed, Myc controls gene expression programs at multiple levels: directly binding chromatin and recruiting transcriptional coregulators; modulating the activity of RNA polymerases (RNAPs); and drawing chromatin topology. Therefore, it is evident that Myc deregulation in cancer is a dramatic event. Glioblastoma multiforme (GBM) is the most lethal, still incurable, brain cancer in adults, and it is characterized in most cases by Myc deregulation. Metabolic rewiring typically occurs in cancer cells, and GBM undergoes profound metabolic changes to supply increased energy demand. In nontransformed cells, Myc tightly controls metabolic pathways to maintain cellular homeostasis. Consistently, in Myc-overexpressing cancer cells, including GBM cells, these highly controlled metabolic routes are affected by enhanced Myc activity and show substantial alterations. On the other hand, deregulated cancer metabolism impacts Myc expression and function, placing Myc at the intersection between metabolic pathway activation and gene expression. In this review paper, we summarize the available information on GBM metabolism with a specific focus on the control of the Myc oncogene that, in turn, rules the activation of metabolic signals, ensuring GBM growth.
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- 2023
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43. A New Insight into MYC Action: Control of RNA Polymerase II Methylation and Transcription Termination.
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Scagnoli F, Palma A, Favia A, Scuoppo C, Illi B, and Nasi S
- Abstract
MYC oncoprotein deregulation is a common catastrophic event in human cancer and limiting its activity restrains tumor development and maintenance, as clearly shown via Omomyc, an MYC-interfering 90 amino acid mini-protein. MYC is a multifunctional transcription factor that regulates many aspects of transcription by RNA polymerase II (RNAPII), such as transcription activation, pause release, and elongation. MYC directly associates with Protein Arginine Methyltransferase 5 (PRMT5), a protein that methylates a variety of targets, including RNAPII at the arginine residue R1810 (R1810me2s), crucial for proper transcription termination and splicing of transcripts. Therefore, we asked whether MYC controls termination as well, by affecting R1810me2S. We show that MYC overexpression strongly increases R1810me2s, while Omomyc, an MYC shRNA, or a PRMT5 inhibitor and siRNA counteract this phenomenon. Omomyc also impairs Serine 2 phosphorylation in the RNAPII carboxyterminal domain, a modification that sustains transcription elongation. ChIP-seq experiments show that Omomyc replaces MYC and reshapes RNAPII distribution, increasing occupancy at promoter and termination sites. It is unclear how this may affect gene expression. Transcriptomic analysis shows that transcripts pivotal to key signaling pathways are both up- or down-regulated by Omomyc, whereas genes directly controlled by MYC and belonging to a specific signature are strongly down-regulated. Overall, our data point to an MYC/PRMT5/RNAPII axis that controls termination via RNAPII symmetrical dimethylation and contributes to rewiring the expression of genes altered by MYC overexpression in cancer cells. It remains to be clarified which role this may have in tumor development.
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- 2023
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44. Pillars and Gaps of S-Nitrosylation-Dependent Epigenetic Regulation in Physiology and Cancer.
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Salvatori L, Spallotta F, Gaetano C, and Illi B
- Abstract
Nitric oxide (NO) is a diffusible signaling molecule produced by three isoforms of nitric oxide synthase, which release NO during the metabolism of the amino acid arginine. NO participates in pathophysiological responses of many different tissues, inducing concentration-dependent effect. Indeed, while low NO levels generally have protective effects, higher NO concentrations induce cytotoxic/cytostatic actions. In recent years, evidences have been accumulated unveiling S-nitrosylation as a major NO-dependent post-translational mechanism ruling gene expression. S-nitrosylation is a reversible, highly regulated phenomenon in which NO reacts with one or few specific cysteine residues of target proteins generating S-nitrosothiols. By inducing this chemical modification, NO might exert epigenetic regulation through direct effects on both DNA and histones as well as through indirect actions affecting the functions of transcription factors and transcriptional co-regulators. In this light, S-nitrosylation may also impact on cancer cell gene expression programs. Indeed, it affects different cell pathways and functions ranging from the impairment of DNA damage repair to the modulation of the activity of signal transduction molecules, oncogenes, tumor suppressors, and chromatin remodelers. Nitrosylation is therefore a versatile tool by which NO might control gene expression programs in health and disease.
- Published
- 2021
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45. Identification and Functional Characterization of Novel MYC-Regulated Long Noncoding RNAs in Group 3 Medulloblastoma.
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Rea J, Carissimo A, Trisciuoglio D, Illi B, Picard D, Remke M, Laneve P, and Caffarelli E
- Abstract
The impact of protein-coding genes on cancer onset and progression is a well-established paradigm in molecular oncology. Nevertheless, unveiling the contribution of the noncoding genes-including long noncoding RNAs (lncRNAs)-to tumorigenesis represents a great challenge for personalized medicine, since they (i) constitute the majority of the human genome, (ii) are essential and flexible regulators of gene expression and (iii) present all types of genomic alterations described for protein-coding genes. LncRNAs have been increasingly associated with cancer, their highly tissue- and cancer type-specific expression making them attractive candidates as both biomarkers and therapeutic targets. Medulloblastoma is one of the most common malignant pediatric brain tumors. Group 3 is the most aggressive subgroup, showing the highest rate of metastasis at diagnosis. Transcriptomics and reverse genetics approaches were combined to identify lncRNAs implicated in Group 3 Medulloblastoma biology. Here we present the first collection of lncRNAs dependent on the activity of the MYC oncogene, the major driver gene of Group 3 Medulloblastoma. We assessed the expression profile of selected lncRNAs in Group 3 primary tumors and functionally characterized these species. Overall, our data demonstrate the direct involvement of three lncRNAs in Medulloblastoma cancer cell phenotypes.
- Published
- 2021
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46. The Protein Arginine Methyltransferases 1 and 5 affect Myc properties in glioblastoma stem cells.
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Favia A, Salvatori L, Nanni S, Iwamoto-Stohl LK, Valente S, Mai A, Scagnoli F, Fontanella RA, Totta P, Nasi S, and Illi B
- Subjects
- Antibodies immunology, Cell Cycle Checkpoints, Cell Differentiation, Cell Line, Tumor, Glioblastoma, HEK293 Cells, Humans, Methylation, Neoplastic Stem Cells cytology, Neoplastic Stem Cells metabolism, Promoter Regions, Genetic, Protein Binding, Protein Stability, Protein-Arginine N-Methyltransferases antagonists & inhibitors, Protein-Arginine N-Methyltransferases genetics, Protein-Arginine N-Methyltransferases immunology, Proto-Oncogene Proteins c-myc chemistry, Proto-Oncogene Proteins c-myc genetics, RNA Interference, RNA, Small Interfering metabolism, Repressor Proteins antagonists & inhibitors, Repressor Proteins genetics, Repressor Proteins immunology, SOXB1 Transcription Factors genetics, SOXB1 Transcription Factors metabolism, Neoplastic Stem Cells enzymology, Protein-Arginine N-Methyltransferases metabolism, Proto-Oncogene Proteins c-myc metabolism, Repressor Proteins metabolism
- Abstract
Protein Arginine (R) methylation is the most common post-translational methylation in mammalian cells. Protein Arginine Methyltransferases (PRMT) 1 and 5 dimethylate their substrates on R residues, asymmetrically and symmetrically, respectively. They are ubiquitously expressed and play fundamental roles in tumour malignancies, including glioblastoma multiforme (GBM) which presents largely deregulated Myc activity. Previously, we demonstrated that PRMT5 associates with Myc in GBM cells, modulating, at least in part, its transcriptional properties. Here we show that Myc/PRMT5 protein complex includes PRMT1, in both HEK293T and glioblastoma stem cells (GSCs). We demonstrate that Myc is both asymmetrically and symmetrically dimethylated by PRMT1 and PRMT5, respectively, and that these modifications differentially regulate its stability. Moreover, we show that the ratio between symmetrically and asymmetrically dimethylated Myc changes in GSCs grown in stem versus differentiating conditions. Finally, both PRMT1 and PRMT5 activity modulate Myc binding at its specific target promoters. To our knowledge, this is the first work reporting R asymmetrical and symmetrical dimethylation as novel Myc post-translational modifications, with different functional properties. This opens a completely unexplored field of investigation in Myc biology and suggests symmetrically dimethylated Myc species as novel diagnostic and prognostic markers and druggable therapeutic targets for GBM.
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- 2019
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47. Agenesis of the putamen and globus pallidus caused by recessive mutations in the homeobox gene GSX2.
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De Mori R, Severino M, Mancardi MM, Anello D, Tardivo S, Biagini T, Capra V, Casella A, Cereda C, Copeland BR, Gagliardi S, Gamucci A, Ginevrino M, Illi B, Lorefice E, Musaev D, Stanley V, Micalizzi A, Gleeson JG, Mazza T, Rossi A, and Valente EM
- Subjects
- Adolescent, Adult, Basal Ganglia growth & development, Basal Ganglia metabolism, Basal Ganglia physiopathology, Cell Differentiation genetics, Child, Preschool, Embryo, Mammalian metabolism, Female, Globus Pallidus metabolism, Globus Pallidus physiopathology, Homeodomain Proteins metabolism, Humans, Male, Mutation, Neural Stem Cells metabolism, Neurogenesis physiology, Neurons metabolism, Putamen metabolism, Putamen physiopathology, Telencephalon, Transcription Factors genetics, Exome Sequencing methods, Globus Pallidus growth & development, Homeodomain Proteins genetics, Putamen growth & development
- Abstract
Basal ganglia are subcortical grey nuclei that play essential roles in controlling voluntary movements, cognition and emotion. While basal ganglia dysfunction is observed in many neurodegenerative or metabolic disorders, congenital malformations are rare. In particular, dysplastic basal ganglia are part of the malformative spectrum of tubulinopathies and X-linked lissencephaly with abnormal genitalia, but neurodevelopmental syndromes characterized by basal ganglia agenesis are not known to date. We ascertained two unrelated children (both female) presenting with spastic tetraparesis, severe generalized dystonia and intellectual impairment, sharing a unique brain malformation characterized by agenesis of putamina and globi pallidi, dysgenesis of the caudate nuclei, olfactory bulbs hypoplasia, and anomaly of the diencephalic-mesencephalic junction with abnormal corticospinal tract course. Whole-exome sequencing identified two novel homozygous variants, c.26C>A; p.(S9*) and c.752A>G; p.(Q251R) in the GSX2 gene, a member of the family of homeobox transcription factors, which are key regulators of embryonic development. GSX2 is highly expressed in neural progenitors of the lateral and median ganglionic eminences, two protrusions of the ventral telencephalon from which the basal ganglia and olfactory tubercles originate, where it promotes neurogenesis while negatively regulating oligodendrogenesis. The truncating variant resulted in complete loss of protein expression, while the missense variant affected a highly conserved residue of the homeobox domain, was consistently predicted as pathogenic by bioinformatic tools, resulted in reduced protein expression and caused impaired structural stability of the homeobox domain and weaker interaction with DNA according to molecular dynamic simulations. Moreover, the nuclear localization of the mutant protein in transfected cells was significantly reduced compared to the wild-type protein. Expression studies on both patients' fibroblasts demonstrated reduced expression of GSX2 itself, likely due to altered transcriptional self-regulation, as well as significant expression changes of related genes such as ASCL1 and PAX6. Whole transcriptome analysis revealed a global deregulation in genes implicated in apoptosis and immunity, two broad pathways known to be involved in brain development. This is the first report of the clinical phenotype and molecular basis associated to basal ganglia agenesis in humans., (© The Author(s) (2019). Published by Oxford University Press on behalf of the Guarantors of Brain.)
- Published
- 2019
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48. Copper/MYC/CTR1 interplay: a dangerous relationship in hepatocellular carcinoma.
- Author
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Porcu C, Antonucci L, Barbaro B, Illi B, Nasi S, Martini M, Licata A, Miele L, Grieco A, and Balsano C
- Abstract
Free serum copper correlates with tumor incidence and progression of human cancers, including hepatocellular carcinoma (HCC). Copper extracellular uptake is provided by the transporter CTR1, whose expression is regulated to avoid excessive intracellular copper entry. Inadequate copper serum concentration is involved in the pathogenesis of Non Alcoholic Fatty Liver Disease (NAFLD), which is becoming a major cause of liver damage progression and HCC incidence. Finally, MYC is over-expressed in most of HCCs and is a critical regulator of cellular growth, tumor invasion and metastasis. The purpose of our study was to understand if higher serum copper concentrations might be involved in the progression of NAFLD-cirrhosis toward-HCC. We investigated whether high exogenous copper levels sensitize liver cells to transformation and if it exists an interplay between copper-related proteins and MYC oncogene. NAFLD-cirrhotic patients were characterized by a statistical significant enhancement of serum copper levels, even more evident in HCC patients. We demonstrated that high extracellular copper concentrations increase cell growth, migration, and invasion of liver cancer cells by modulating MYC/CTR1 axis. We highlighted that MYC binds a specific region of the CTR1 promoter, regulating its transcription. Accordingly, CTR1 and MYC proteins expression were progressively up-regulated in liver tissues from NAFLD-cirrhotic to HCC patients. This work provides novel insights on the molecular mechanisms by which copper may favor the progression from cirrhosis to cancer. The Cu/MYC/CTR1 interplay opens a window to refine HCC diagnosis and design new combined therapies., Competing Interests: CONFLICTS OF INTEREST The authors declare that they have no conflicts of interest.
- Published
- 2018
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49. Hypomorphic Recessive Variants in SUFU Impair the Sonic Hedgehog Pathway and Cause Joubert Syndrome with Cranio-facial and Skeletal Defects.
- Author
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De Mori R, Romani M, D'Arrigo S, Zaki MS, Lorefice E, Tardivo S, Biagini T, Stanley V, Musaev D, Fluss J, Micalizzi A, Nuovo S, Illi B, Chiapparini L, Di Marcotullio L, Issa MY, Anello D, Casella A, Ginevrino M, Leggins AS, Roosing S, Alfonsi R, Rosati J, Schot R, Mancini GMS, Bertini E, Dobyns WB, Mazza T, Gleeson JG, and Valente EM
- Subjects
- Abnormalities, Multiple pathology, Bone Diseases, Developmental pathology, Cells, Cultured, Cerebellum pathology, Child, Cohort Studies, Craniofacial Abnormalities pathology, Eye Abnormalities pathology, Female, Fibroblasts metabolism, Fibroblasts pathology, Gene Expression Regulation, Developmental, Humans, Kidney Diseases, Cystic pathology, Kruppel-Like Transcription Factors metabolism, Male, Nerve Tissue Proteins metabolism, Repressor Proteins chemistry, Repressor Proteins metabolism, Retina pathology, Sequence Analysis, DNA, Signal Transduction, Skin metabolism, Skin pathology, Zinc Finger Protein Gli3, Abnormalities, Multiple genetics, Bone Diseases, Developmental genetics, Cerebellum abnormalities, Craniofacial Abnormalities genetics, Eye Abnormalities genetics, Genes, Recessive, Hedgehog Proteins metabolism, Kidney Diseases, Cystic genetics, Mutation, Missense, Repressor Proteins genetics, Retina abnormalities
- Abstract
The Sonic Hedgehog (SHH) pathway is a key signaling pathway orchestrating embryonic development, mainly of the CNS and limbs. In vertebrates, SHH signaling is mediated by the primary cilium, and genetic defects affecting either SHH pathway members or ciliary proteins cause a spectrum of developmental disorders. SUFU is the main negative regulator of the SHH pathway and is essential during development. Indeed, Sufu knock-out is lethal in mice, and recessive pathogenic variants of this gene have never been reported in humans. Through whole-exome sequencing in subjects with Joubert syndrome, we identified four children from two unrelated families carrying homozygous missense variants in SUFU. The children presented congenital ataxia and cerebellar vermis hypoplasia with elongated superior cerebellar peduncles (mild "molar tooth sign"), typical cranio-facial dysmorphisms (hypertelorism, depressed nasal bridge, frontal bossing), and postaxial polydactyly. Two siblings also showed polymicrogyria. Molecular dynamics simulation predicted random movements of the mutated residues, with loss of the native enveloping movement of the binding site around its ligand GLI3. Functional studies on cellular models and fibroblasts showed that both variants significantly reduced SUFU stability and its capacity to bind GLI3 and promote its cleavage into the repressor form GLI3R. In turn, this impaired SUFU-mediated repression of the SHH pathway, as shown by altered expression levels of several target genes. We demonstrate that germline hypomorphic variants of SUFU cause deregulation of SHH signaling, resulting in recessive developmental defects of the CNS and limbs which share features with both SHH-related disorders and ciliopathies., (Copyright © 2017 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
50. Resetting cancer stem cell regulatory nodes upon MYC inhibition.
- Author
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Galardi S, Savino M, Scagnoli F, Pellegatta S, Pisati F, Zambelli F, Illi B, Annibali D, Beji S, Orecchini E, Alberelli MA, Apicella C, Fontanella RA, Michienzi A, Finocchiaro G, Farace MG, Pavesi G, Ciafrè SA, and Nasi S
- Subjects
- Angiogenesis Inhibitors, Apoptosis, Basic Helix-Loop-Helix Transcription Factors genetics, Cell Differentiation, Cell Proliferation, ErbB Receptors genetics, Glioblastoma physiopathology, Humans, Inhibitor of Differentiation Proteins genetics, MicroRNAs genetics, Nerve Tissue Proteins genetics, Oligodendrocyte Transcription Factor 2, Protein Binding, Transcriptional Activation, Tumor Microenvironment genetics, Zinc Finger E-box-Binding Homeobox 1 genetics, Gene Expression Regulation, Neoplastic, Genes, myc, Glioblastoma genetics, Neoplastic Stem Cells physiology, Peptide Fragments genetics, Proto-Oncogene Proteins c-myc genetics, Transcription Factors genetics
- Abstract
MYC deregulation is common in human cancer and has a role in sustaining the aggressive cancer stem cell populations. MYC mediates a broad transcriptional response controlling normal biological programmes, but its activity is not clearly understood. We address MYC function in cancer stem cells through the inducible expression of Omomyc-a MYC-derived polypeptide interfering with MYC activity-taking as model the most lethal brain tumour, glioblastoma. Omomyc bridles the key cancer stemlike cell features and affects the tumour microenvironment, inhibiting angiogenesis. This occurs because Omomyc interferes with proper MYC localization and itself associates with the genome, with a preference for sites occupied by MYC This is accompanied by selective repression of master transcription factors for glioblastoma stemlike cell identity such as OLIG2, POU3F2, SOX2, upregulation of effectors of tumour suppression and differentiation such as ID4, MIAT, PTEN, and modulation of the expression of microRNAs that target molecules implicated in glioblastoma growth and invasion such as EGFR and ZEB1. Data support a novel view of MYC as a network stabilizer that strengthens the regulatory nodes of gene expression networks controlling cell phenotype and highlight Omomyc as model molecule for targeting cancer stem cells., (© 2016 The Authors.)
- Published
- 2016
- Full Text
- View/download PDF
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