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Marine resources exploitation through bottom trawling affects marine ecosystems; thus, management should consider the presence of sensitive species as ecosystem health indicators. Epibenthic organisms such as sea pens are widely used to assess benthic conditions, as their populations are declining where trawling is intense. The Pomo/Jabuka Pits fishing ground in the Adriatic Sea, subject to various management measures over the years, is a nursery for European hake and hosts a small, but dense, population of Norway lobster and a remarkable abundance of pink shrimp. The sea pen Funiculina quadrangularis shares its habitat (sandy-muddy bottoms) with these crustaceans. Through UnderWater TeleVision surveys conducted from 2012 to 2019, F. quadrangularis abundance and distribution were quantified in relation to changes in the spatiotemporal distribution of fishing efforts. The average density (n/m2) of colonies was calculated for three periods: BEFORE implementation of measures (before 1 July 2015), during an INTERMEDIATE period in which limitations changed (2 July 2015 to 31 August 2017), and AFTER the implementation of a Fishery Restricted Area (from 1 September 2017). F. quadrangularis revealed an increase in density where fisheries were closed, even after a short period. This showed how management measures can positively influence epibenthic communities and that sea pens can be indicators of impact and/or recovery of habitats.

The blue jack mackerel Trachurus picturatus (Bowdich, 1825) specimens (N = 155) were collected during the MEDITS survey, done along the eastern side, precisely, of the Croatian fishing ground in July 2018. Biometrical analysis of ten morphometric and five meristic characters, as well as genetic analysis proved that the collected specimens were blue jack mackerel. The total length (TL) and weight (W) of all observed specimens ranged from 9.2 to 33.7 cm (12.15 ± 2.95 cm) and from 5.79 to 384.94 g (17.64 ± 39.42 g), respectively. All calculated length–length relationships were linear (r > 0.923). Sex was determined only on two larger specimens (28 cm < TL < 32.8 cm), which were females. In the length–weight relationship, positive allometry was established (b = 3.1789). Based on 37 partial cytochrome b sequences, the overall haplotype diversity (h) of 0.812 ± 0.048 and nucleotide diversity (π) of 0.0064 ± 0.0007 indicated high levels of haplotype and low nucleotide diversity. The obtained sequences were compared to previously published research within the Northeast Atlantic Ocean and the Mediterranean Sea, confirming the absence of genetic structure among these populations.

With the aim of investigating whether yessotoxin (YTX) is responsible for diarrhetic shellfish poisoning (DSP) events in Croatian waters, three different methods were combined: a modified mouse bioassay (MBA) that discriminates YTX from other DSP toxins, the enzyme-linked immunosorbent assay method (ELISA) and liquid chromatography-mass spectrometry (LC-MS/MS). Among 453 samples of mussels and seawater analyzed in 2007, 10 samples were DSP positive. Results obtained by the modified MBA method revealed that most of the samples were positive for YTX, with the exception of samples from Lim Bay (LB 1) The ELISA method also identified the presence of YTX in these samples. DSP toxin profiles showed the presence of okadaic acid (OA) in three, and YTX in four out of nine samples that were analyzed by LC-MS/MS. The phytoplankton community structure pattern revealed Lingulodinium polyedrum (Stein) Dodge, which was present in the water prior to and/or during toxicity events at low concentrations (80 to 1440 cells L-1), as a potential YTX producing species. It is proposed that L. polyedrum cells accumulated in mussels and the subsequently observed toxicity may be related to metabolism after ingestion, resulting in carboxy YTX as the major analog in the mussel.

The present study provides updated information on the occurrence, abundance and biomass distribution patterns and length frequencies of Merluccius merluccius in the Mediterranean Sea, by analysing a time series of data from the Mediterranean International Trawl Surveys (MEDITS) from 1994 to 2015. The highest values of abundance and biomass were observed in the Sardinian Seas. The use of a generalized additive model, in which standardized biomass indices (kg km–2) were analysed as a function of environmental variables, explained how ecological factors could affect the spatio-temporal distribution of European hake biomass in the basin. High biomass levels predicted by the model were observed especially at 200 m depth and between 14°C and 18°C, highlighting the preference of the species for colder waters. A strong reduction of biomass was observed since the year 2009, probably due to the strengthening of the seasonal thermocline that had greatly reduced the availability of food. The general decrease in biomass of several stocks of anchovy and sardine, preys of European hake, might be indirectly connected to the decreasing biomass detected in the present study. The length analysis shows median values lower than 200 mm total length of most of the investigated areas.

Marine litter is one of the main sources of anthropogenic pollution in the marine ecosystem, with plastic representing a global threat. This paper aims to assess the spatial distribution of plastic macro-litter on the seafloor, identifying accumulation hotspots at a northern Mediterranean scale. Density indices (items km–2) from the MEDITS trawl surveys (years 2013-2015) were modelled by generalized additive models using a Delta-type approach and several covariates: latitude, longitude, depth, seafloor slope, surface oceanographic currents and distances from main ports. To set thresholds for the identification of accumulation areas, the percentiles (85th, 90th and 95th) of the plastic spatial density distribution were computed on the raster data. In the northern Mediterranean marine macro-litter was widespread (90.13% of the 1279 surveyed stations), with plastic by far the most recurrent category. The prediction map of the plastic density highlighted accumulation areas (85th, 90th and 95th percentiles of the distribution, respectively, corresponding to 147, 196 and 316 items km–2) in the Gulf of Lions, eastern Corsica, the eastern Adriatic Sea, the Argo-Saronic region and waters around southern Cyprus. Maximum densities were predicted in correspondence to the shallower depths and in proximity to populated areas (distance from the ports). Surface currents and local water circulation with cyclonic and anticyclonic eddies were identified as drivers likely facilitating the sinking to the bottoms of floating debris.

The high species richness, coupled with high proportion of endemism, makes the Mediterranean one of the world’s ‘biodiversity hotspots’. However, the continuous increase in fisheries in the last few decades has led to the overexploitation of their main commercial stocks. Using fishery-independent data collected under the framework of the MEDITS trawl surveys carried out over the last 20 years, we study the demersal fish diversity pattern in the Mediterranean at a large spatial and temporal scale to determine whether it is being affected by the general fishing overexploitation of the demersal resources. The detected diversity trends are compared with the spatio-temporal variation in bottom trawl fishing effort in the Mediterranean. Our results show a stability and even recovery of demersal fish diversity in the Mediterranean together with higher diversity values on the continental shelves of the Balearic Islands, Sardinia, Sicily and the Aegean Sea. At large temporal and spatial scales, the high diversity of demersal assemblages in the Mediterranean is associated with a reduction in bottom trawl fishing effort. The inclusion of species other than target ones through diversity indices is important in the implementation of an ecosystem-based fisheries management.

Thanks to the availability of the MEDITS survey data, a standardized picture of the occurrence and abundance of demersal Chondrichthyes in the northern Mediterranean has been obtained. During the spring-summer period between 2012 and 2015, 41 Chondrichthyes, including 18 sharks (5 orders and 11 families), 22 batoids (3 orders and 4 families) and 1 chimaera, were detected from several geographical sub-areas (GSAs) established by the General Fisheries Commission for the Mediterranean. Batoids had a preferential distribution on the continental shelf (10-200 m depth), while shark species were more frequent on the slope (200-800 m depth). Only three species, the Carcharhiniformes Galeus melastomus and Scyliorhinus canicula and the Torpediniformes Torpedo marmorata were caught in all GSAs studied. On the continental shelf, the Rajidae family was the most abundant, being represented in primis by Raja clavata and then by R. miraletus, R. polystigma and R. asterias. The slope was characterized by the prevalence of G. melastomus in all GSAs, followed by S. canicula, E. spinax and Squalus blainville. Areas under higher fishing pressure, such as the Adriatic Sea and the Spanish coast (with the exception of the Balearic Islands), show a low abundance of chondrichthyans, but other areas with a high level of fishing pressure, such as southwestern Sicily, show a high abundance, suggesting that other environmental drivers work together with fishing pressure to shape their distribution. Results of generalized additive models highlighted that depth is one of the most important environmental drivers influencing the distribution of both batoid and shark species, although temperature also showed a significant influence on their distribution. The approach explored in this work shows the possibility of producing maps modelling the distribution of demersal chondrichthyans in the Mediterranean that are useful for the management and conservation of these species at a regional scale. However, because of the vulnerability of these species to fishing exploitation, fishing pressure should be further incorporated in these models in addition to these environmental drivers.

The uncertainty in age estimation by otolith reading may be at the root of the large variability in red mullet (Mullus barbatus) growth models in the Mediterranean. In the MEDITS survey, red mullet age data are produced following the same sampling protocol and otolith reading methodology. However, ageing is assigned using different interpretation schemes, including variations in theoretical birthdate and number of false rings considered, in addition to differences in the experience level of readers. The present work analysed the influence of these variations and the geographical location of sampling on red mullet ageing using a multivariate approach (principal component analysis). Reader experience was the most important parameter correlated with the variability. The number of rings considered false showed a significant effect on the variability in the first age groups but had less influence on the older ones. The effect of the theoretical birthdate was low in all age groups. Geographical location had a significant influence, with longitude showing greater effects than latitude. In light of these results, workshops, exchanges and the adoption of a common ageing protocol based on age validation studies are considered fundamental tools for improving precision in red mullet ageing.

The main characteristics concerning the distribution of two of the most important decapod crustaceans of commercial interest in the Mediterranean Sea, the deep-water rose shrimp, Parapenaeus longirostris, and the Norway lobster, Nephrops norvegicus, are studied in the European Mediterranean waters. The study is based on data collected under the MEDITS trawl surveys from 1994 to 2015 from the Gibraltar Straits to the northeastern Levantine Basin (Cyprus waters). The observed differences can be interpreted as different responses to environmental drivers related to the differing life history traits of the two species. In fact, N. norvegicus is a long-living, benthic burrowing species with low growth and mortality rates, while P. longirostris is an epibenthic, short-living species characterized by higher rates of growth and mortality.

Identification of the two sympatric species, Alloteuthis media and Alloteuthis subulata, has long relied on a set of identifying morphometric parameters and descriptive guidelines. To resolve taxonomic status of Alloteuthis in the Eastern Adriatic, we used morphological and molecular approach on a dataset collected during MEDITS expeditions sampling the entire Eastern Adriatic over consecutive summers. Phylogenetic analyses inferred from mitochondrial DNA cytochrome oxidase I (COI) gene sequences confirmed presence of both species in the Eastern Adriatic, with A. subulata occurring only in its central and southern parts. Analyses of genetic diversity showed that A. subulata samples in the Eastern Adriatic shared a single haplotype while A. media showed high haplotype diversity. Comparison of Eastern Adriatic A. media samples and populations from other regions showed statistically significant genetic differentiation between the Atlantic haplotypes and each of the Adriatic, Aegean, and Ionian populations. Conversely, A. subulata had low genetic diversity with only two haplotypes present across samples collected globally. There was no single morphometric character with strong enough power to discriminate between species, however, when morphological traits were looked as a composite metric rather than in isolation, the majority of individuals were correctly classified into one of three groups (A. media males or females and A. subulata).

Abundance and distribution of commercial marine resources are influenced by environmental variables, which together with fishery patterns may also influence their catchability. However, Catch Per Unit Effort (CPUE) can be standardized in order to remove most of the variability not directly attributable to fish abundance. In the present study, Generalized Additive Models (GAMs) were used to investigate the effect of some environmental and fishery covariates on the spatial distribution and abundance of the Norway lobster Nephrops norvegicus within the Pomo/Jabuka Pits (Central Adriatic Sea) and to include those that resulted significant in a standardization process. N. norvegicus is a commercially important demersal crustacean, altering its catchability over the 24-h cycle and seasons according to its burrowing behavior. A historically exploited fishing ground for this species, since 2015 subject to specific fisheries management measures, is represented by the meso-Adriatic depressions, which are also characterized by particular oceanographic conditions. Both the species behaviour and the features of this study area influence the dynamics of the population offering a challenging case study for a standardization modelling approach. Environmental and catch data were obtained during scientific trawl surveys properly designed to catch N. norvegicus, thus improving the quality of the model input data. Standardization of CPUE from 2 surveys from 2012 to 2019 was conducted building two GAMs for both biomass and density indices. Bathymetry, fishing pressure, dissolved oxygen and salinity proved to be significant drivers influencing catch distribution. After cross validations, the tuned models were then used to predict new indices for the study area and the two survey series by means of informed spatial grids, composed by constant surface cells, to each of which are associated average values of environmental parameters and specific levels of fishing pressure, depending on the management measures in place. The predictions can be used to better describe the structure and the spatio-temporal distribution of the population providing valuable information to evaluate the status of such an important marine resource.

A new approach to recruitment overfishing diagnosis is presented. We hypothesize that condition of recruits should increase when recruitment failures are caused by fishing activity. This would be a consequence of the increase in trophic resource availability, because the population is smaller than that which the ecosystem could support. Temporal series of hake recruit condition were calculated from MEDITS survey data collected in Mediterranean geographical sub-areas (GSAs) 1, 6, 17 and 19 from 1994 to 2015. Multiple linear regressions were used to analyse the relationship between mean annual condition and abundance of recruits and climatic indices in each GSA. Significant correlations were only detected in GSA 6, where 69% of condition variability was explained by the negative correlation with recruit abundance, and with two climatic indices, the Western Mediterranean Oscillation and the standardized air temperature anomaly at surface from the Gulf of Lions. Despite the differences in recruit abundance among GSAs, their mean annual condition oscillated around the same basal value during most of the time series, pointing to density-dependent mortality rates as an important mechanism stabilizing hake recruitment to levels close to the carrying capacity when populations do not suffer recruitment overfishing. This pattern changed when the decreasing recruit abundance trend drove GSA 6 condition values persistently above those of the rest of the GSAs. According to our hypothesis, hake in GSA 6 is in recruitment overfishing.

The status of fishery resources in the Mediterranean Sea is critical: most of the fish and shellfish stocks are in overexploitation and only half of them are routinely assessed. This manuscript presents the use of Surplus Production Models (SPMs) as a valid option to increase the number of assessed stocks, with specific attention to the Adriatic basin. Particularly, the stock of European sprat (Sprattus sprattus), Mediterranean horse mackerel (Trachurus mediterraneus), and Atlantic horse mackerel (Trachurus trachurus) living in the Adriatic Sea have been evaluated comparing three SPMs: Catch Maximum Sustainable Yields (CMSY), Stochastic surplus Production model in Continuous Time (SPiCT), and Abundance Maximum Sustainable Yields (AMSY). The different approaches present some variations; however, they generally agree on describing all the stocks close to the reference values for both biomass and fishing mortality in the most recent year. For the European sprat, AMSY results are the most robust model for this species’ survey data allow depicting a clearer picture of the history of this stock. Indeed, for the horse mackerel species, CMSY or SPiCT results are the preferred models, since for these species landings are not negligible. Notwithstanding, age-structured assessments remain the most powerful approach for evaluating the status of resources, but SPMs have proved to be a powerful tool in a data-limited context.

We examined how the trophic ecology of nine economically important marine taxa varied across three distinct areas of the Adriatic Sea. These taxa included three species of demersal fishes (European hake Merluccius merluccius, red mullet Mullus barbatus, black-bellied angler Lophius budegassa) and two species of decapod crustaceans (Norway lobster Nephrops norvegicus, deep-water rose shrimp Parapenaeus longirostris) and four species of pelagic fishes (sardine Sardina pilchardus, anchovy Engraulis encrasicolus, Mediterranean horse mackerel Trachurus mediterraneus, Atlantic horse mackerel Trachurus trachurus). We used two complementary methods that differed in their temporal context to examine and compare diet. Stomach contents analysis was used to describe the short term diet while stable isotope analysis was used compare long-term assimilated diet. Results showed that although there were spatial differences in what each species consumed, and in their trophic and isotopic niches, each species fed at similar trophic position across locations, indicating similar ecological function. Comparisons of biomass-weighted trophic position (δ15N) and consumer body size (log2 mass) showed evidence for a common isotopic size spectrum across areas, indicating the existence of a size-structured food web. In turn this allowed us to provide a first estimate of the predator–prey body mass ratio (PPMR) for this area (655:1). Results obtained within this study, in future, could be used for ecological modeling and improved long-term management of the Adriatic Sea’s marine resources.

A study of the age, growth and population structure of Acanthocardia tuberculata from the eastern Adriatic Sea was carried out. The condition index analysis identified one reproductive peak, which occurred between April and May, for a population of A. tuberculata in the Cetina River estuary with uni-modal recruitment. Annual growth rings on the external shell surface consisted of a dark ring deposited during the summer-autumn period and a light ring deposited during winter-spring. This was validated by acetate peels of shell sections and marginal increment analysis. Shell lengths of aged specimens ranged from 19.7 to 62.9 mm (mean = 41.21±8.96 mm). Estimated ages ranged from 5 months to 11 years, with mean values of 2.1, 2.4 and 3.1 years for Rab Island, Pag Bay and the Cetina River estuary respectively. Shell deposition is fastest during the first two years of life and significantly decreases after the 4th year. The growth parameters L∞ and k were estimated using the Gulland-Holt method and by fitting length at age data to a von Bertalanffy growth curve. Values of L∞ ranged from 52.6 mm (Rab Island) to 59.7 mm (Pag Bay). The growth constant k showed greater variations (0.49 to 0.77 year-1), while growth performance index values (ø’) ranged from 3.13 to 3.36.