5,489 results on '"Ibrahim, F."'
Search Results
2. Simultaneous impacts of nuclear shell structure and collectivity on $\beta$-decay: evidence from $^{80}$Ga$_{49}$
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Li, R., Verney, D., De Gregorio, G., Mancino, R., Matea, I., Coraggio, L., Itaco., N., Harakeh, M. N., Delafosse, C., Didierjean, F., Ayoubi, L. A., Falou, H. Al, Benzoni, G., Blanc, F. Le, Bozkurt, V., Ciemała, M., Deloncle, I., Fallot, M., Gaulard, C., Gottardo, A., Guadilla, V., Guillot, J., Hadyńska-Klęk, K., Ibrahim, F., Jovancevic, N., Kankainen, A., Lebois, M., Martínez, T., Napiorkowski, P., Roussiere, B., Sobolev, Yu. G., Stefan, I., Stukalov, S., Thisse, D., and Tocabens, G.
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Nuclear Experiment - Abstract
The Gamow-Teller strength distribution covering the entire $\beta$-decay window, up to 10.312(4) MeV, of $^{80g+m}$Ga was measured for the first time in photo-fission of UC$_x$ induced by 50 MeV electron beam. The new data show significant enhancement in the high-energy region with a jump-structure. Simultaneously, the $\gamma$ de-exciting behavior of $\beta$-populated states presents a competition between de-excitation to 2$_1^+$ [$\beta_2$ = 0.155(9)] and to 2$_2^+$ [$\beta_2$ = 0.053$_{0.009}^{0.008}$)] in $^{80}$Ge. Based on these facts and combined with a realistic shell model calculation and systematic analysis of logft ratio between precursor $\beta$-decay to 2$_2^+$ and to 2$_1^+$ of Ga isotopes, we conclude that these phenomena evidence simultaneous impacts of nuclear shell structure and collectivity on B(GT) and its distribution and, therefore, the half-life of the precursor. These data prove that the nucleus as a multi-nucleon correlated quantum system reacts as a whole when $\beta$-decay occurs in contrast to simple single-particle excitation. Additionally, the comparison with the theoretical results evidence how challenging is the description of the experimental data obtained, and render this experimental outcome a sound test for the theoretical models.
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- 2024
3. Competency of Family Medicine Residents in Performing Skin Cancer Examination
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AlFada, Mohammed A., Alotaibi, Hend, Madani, Abdulaziz, Alshayea, Ibrahim F., and Alodhayani, Abdulaziz A.
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- 2024
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4. A novel K-nearest neighbor classifier for lung cancer disease diagnosis
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Sachdeva, Ravi Kumar, Bathla, Priyanka, Rani, Pooja, Lamba, Rohit, Ghantasala, G. S. Pradeep, and Nassar, Ibrahim F.
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- 2024
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5. Synthesis, biologic properties, and molecular modeling studies of bis-indole based thiosemicarbazones
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Ceyhan, Sadık M., Bingul, Murat, Sahin, Hasan, Boga, Mehmet, Saglam, Mehmet F., Kandemir, Hakan, and Sengul, Ibrahim F.
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- 2024
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6. Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders
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Andersen, Rebecca E., Alkuraya, Ibrahim F., Ajeesh, Abna, Sakamoto, Tyler, Mena, Elijah L., Amr, Sami S., Romi, Hila, Kenna, Margaret A., Robson, Caroline D., Wilch, Ellen S., Nalbandian, Katarena, Piña-Aguilar, Raul, Walsh, Christopher A., and Morton, Cynthia C.
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- 2024
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7. Angular dependence of the interlayer coupling at the interface between two dimensional materials 1T-PtSe$_2$ and graphene
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Mallet, P., Ibrahim, F., Abdukayumov, K., Marty, A., Vergnaud, C., Bonell, F., Chshiev, M., Jamet, M., and Veuillen, J-Y.
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Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Materials Science - Abstract
We present a study by Scanning Tunneling Microscopy, supported by ab initio calculations, of the interaction between graphene and monolayer (semiconducting) PtSe$_2$ as a function of the twist angle ${\theta}$ between the two layers. We analyze the PtSe$_2$ contribution to the hybrid interface states that develop within the bandgap of the semiconductor to probe the interaction. The experimental data indicate that the interlayer coupling increases markedly with the value of ${\theta}$, which is confirmed by ab initio calculations. The moir\'e patterns observed within the gap are consistent with a momentum conservation rule between hybridized states, and the strength of the hybridization can be qualitatively described by a perturbative model., Comment: Article: 12 pages, 3 figures; Supporting Informations: 19 pages, 12 figures
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- 2023
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8. An Operational Data-Driven Malfunction Detection Framework for Enhanced Power Distribution System Monitoring -- The DeMaDs Approach
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Fellner, David, Strasser, Thomas I., Kastner, Wolfgang, Behnam, Feizifar, and Abdulhadi, Ibrahim F.
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Electrical Engineering and Systems Science - Systems and Control - Abstract
The changes in the electric energy system toward a sustainable future are inevitable and already on the way today. This often entails a change of paradigm for the electric energy grid, for example, the switch from central to decentralized power generation which also has to provide grid-supporting functionalities. However, due to the scarcity of distributed sensors, new solutions for grid operators for monitoring these functionalities are needed. The framework presented in this work allows to apply and assess data-driven detection methods in order to implement such monitoring capabilities. Furthermore, an approach to a multi-stage detection of misconfigurations is introduced. Details on implementations of the single stages as well as their requirements are also presented. Furthermore, testing and validation results are discussed. Due to its feature of being seamlessly integrable into system operators' current metering infrastructure, clear benefits of the proposed solution are pointed out., Comment: 27th International Conference on Electricity Distribution (CIRED 2023)
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- 2023
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9. {}
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Zakaria, N. Z., Abu Hasan, N., Mohd Dani, A. F., Sadikun, A., Ibrahim, F., Kamarulzaman, E. E., Mohamad, S., Abu Hasan, N.,, Mohd Dani, A. F.,, Sadikun, A.,, Ibrahim, F.,, Kamarulzaman, E. E.,, and Mohamad, S.
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Microbiology ,QR1-502 - Published
- 2017
10. A characterization study of Wadi Thamad oil shale: Towards a new source of energy in Jordan
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Nada M. Al‐Ananzeh, Khalid Bani‐Melhem, Hussam Elddin Khasawneh, Asem Al‐Jarrah, and Ibrahim F. Abuawwad
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chemical analysis ,oil shale ,surface characterization ,thermal analysis ,Wadi Thamad ,Technology ,Science - Abstract
Abstract Jordan's energy sector faces significant challenges due to rising fuel prices, making the exploration of local energy resources crucial. The abundant oil shale deposits in Wadi Thamad present a promising opportunity. Since Wadi Thamad oil shale has never been studied before, this research focuses on the Wadi Thamad basin near Madaba, Jordan, aiming to comprehensively characterize its oil shale using advanced analytical techniques. Using X‐ray diffraction, Fourier transform infrared spectroscopy, X‐ray fluorescence, scanning electron microscopy, thermogravimetric analysis (TGA), and differential scanning calorimetry, this study assesses the mineralogical, chemical, and thermal properties of Wadi Thamad oil shale. The findings reveal calcite and quartz as the primary minerals, with significant aliphatic, CO2, hydroxyl, and carboxyl groups. Elemental analysis highlights essential oxides, such as CaO and SiO2. Fischer assay results indicate an oil content of 5.3–10.1 wt%, a gross‐calorific value of 4.56–7.69 MJ/kg, and a sulfur content of 1.77–2.10 wt%. The peak pyrolysis temperature is 432.4°C from TGA. This research's novelty lies in its comprehensive approach to characterizing the underexplored Wadi Thamad oil shale basin. The findings enhance the understanding of Wadi Thamad's geological composition and underscore its potential as a local energy resource, contributing valuable data to Jordan's energy portfolio and offering economic benefits.
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- 2024
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11. Development and validation of an LC‒MS/MS method for the determination of cyclocreatine phosphate and its related endogenous biomolecules in rat heart tissues
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Abo-Elmagd, Ibrahim F., Mahmoud, Amr M., Al-Ghobashy, Medhat A., Nebsen, Marianne, Rabie, Mostafa A., Mohamed, Ahmed F., Ahmed, Lamiaa A., El Sayed, Nesrine S., Arafa, Reem K., Todd, Robert, and Elgebaly, Salwa A.
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- 2024
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12. Vigna mungo (Linn.) Hepper: ethnobotanical, pharmacological, phytochemical, and nutritious profile
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Hadi, Fazal, Sardar, Haseeba, Alam, Waqas, Aschner, Michael, Alzahrani, Fuad M., Halawani, Ibrahim F., Xiao, Jianbo, and Khan, Haroon
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- 2024
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13. Graphite Recycling by Doping Nano-materials for Water Treatment
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Ibrahim, F. A. and Mosa, Sawsan Mohamed Abu El Hassan
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- 2024
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14. Atomic-layer controlled THz Spintronic emission from Epitaxially grown Two dimensional PtSe$_2$/ferromagnet heterostructures
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Abdukayumov, K., Mičica, M., Ibrahim, F., Vergnaud, C., Marty, A., Veuillen, J. -Y., Mallet, P., de Moraes, I. Gomes, Dosenovic, D., Wright, A., Tignon, J., Mangeney, J., Ouerghi, A., Renard, V., Mesple, F., Bonell, F., Okuno, H., Chshiev, M., George, J. -M., Jaffrès, H., Dhillon, S., and Jamet, M.
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Condensed Matter - Materials Science - Abstract
Terahertz (THz) Spintronic emitters based on ferromagnetic/metal junctions have become an important technology for the THz range, offering powerful and ultra-large spectral bandwidths. These developments have driven recent investigations of two-dimensional (2D) materials for new THz spintronic concepts. 2D materials, such as transition metal dichalcogenides (TMDs), are ideal platforms for SCC as they possess strong spin-orbit coupling (SOC) and reduced crystal symmetries. Moreover, SCC and the resulting THz emission can be tuned with the number of layers, electric field or strain. Here, epitaxially grown 1T-PtSe$_2$ and sputtered Ferromagnet (FM) heterostructures are presented as a novel THz emitter where the 1T crystal symmetry and strong SOC favor SCC. High quality of as-grown PtSe$_2$ layers is demonstrated and further FM deposition leaves the PtSe$_2$ unaffected, as evidenced with extensive characterization. Through this atomic growth control, the unique thickness dependent electronic structure of PtSe$_2$ allows the control of the THz emission by SCC. Indeed, we demonstrate the transition from the inverse Rashba-Edelstein effect in one monolayer to the inverse spin Hall effect in multilayers. This band structure flexibility makes PtSe$_2$ an ideal candidate as a THz spintronic 2D material and to explore the underlying mechanisms and engineering of the SCC for THz emission., Comment: 26 pages, 6 figures
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- 2023
15. Unveiling the therapeutic and nutritious potential of Vigna unguiculata in line with its phytochemistry
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Haseeba Sardar, Fazal Hadi, Waqas Alam, Ibrahim F. Halawani, Fuad M. Alzahrani, Rimah Abdullah Saleem, Ida Cerqua, Haroon Khan, and Raffaele Capasso
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Vigna unguiculata ,Ethnobotany ,Pharmacology ,Phytochemistry ,Nutritious profile ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: Vigna unguiculata, belonging to the Fabaceae family, commonly known as cowpea is an important edible legume, distributed mainly across the African and Asian countries. Traditionally, the plant has an outstanding background for the management of multiple diseases, animal feeding and human consumption. Objective: This review aims to mainly focus on the traditional applications, pharmacological activities, phytochemistry as well as nutritious composition of the V. unguiculata. Methods: Data present in the literature on the V. unguiculata, were collected from major scientific databases including Science Direct, SpringerLink, Google Scholar, Medline Plus, Web of Science, PubMed and Elsevier. Results: Number of compounds have been isolated including flavonoids, steroids, alkaloids, phenolic compounds, saponins, fatty acids, tannins, carbohydrates, vitamins, amino acids, carotenoids and fibers from various parts of plant. These compounds exhibit widespread pharmacological potentials both in-vitro and in-vivo including anthelmintic, antibacterial, antinociceptive, thrombolytic, antidiabetic, hypocholestrolemic and antiatherogenic effect, antimicrobial, anti-sickling, antioxidant, anti-covid activity, anticancer and neurobehavioral activities. These compounds have strong pharmacological background and might be responsible for the traditional uses of this plant that are not investigated. Conclusion: It is concluded that V. unguiculata possessed strong pharmacological, nutritious and phytochemical potential, therefore, it is strongly recommended for additional comprehensive investigations in order to determine its clinical utility.
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- 2024
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16. The cardiac toxicity of PAMAM dendrimer drug delivery systems can be attenuated with the adjunct use of cardioprotective agents
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Saghir Akhtar, Fawzi Babiker, Aisha Al-Kouh, and Ibrahim F Benter
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Ischemia/reperfusion ,cardiac injury ,cardiotoxicity ,PAMAM dendrimer ,nanoparticle ,Losartan ,Biology (General) ,QH301-705.5 - Abstract
Polyamidoamine (PAMAM) dendrimer nanoparticles are efficient drug delivery vectors with potential clinical applications in nanomedicine. However, PAMAMs can compromise heart function, and strategies to mitigate cardiotoxicity would be beneficial. In this study, we investigated whether the adjunct use of three key cardioprotective agents could prevent the cardiac injury induced by a seventh-generation cationic PAMAM dendrimer (G7). Isolated rat hearts were subjected to ischemia and reperfusion (I/R) injury in the presence or absence of G7 or the cardioprotective agents Losartan, Epidermal Growth Factor (EGF), or S-nitroso-N-acetylpenicillamine (SNAP). I/R injury significantly compromised cardiac function, in terms of left ventricular hemodynamics, contractility, and vascular dynamics, which were markedly improved (p
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- 2024
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17. Synthesis of CoMnFe2O4 hollow microstructure decorated GO for photocatalytic degradation of organic dyes
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Ibrahim F. Waheed, Maha M. Awsaj, Omar S. Dahham, Mustafa Qutaiba Jabbar, Faiz M. Al‑Abady, and Mohammed Abbas Fadhil Al-Samarrai
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Photocatalysis ,Hollow ferrite ,Photocatalytic efficiency ,Organic dyes ,Chemistry ,QD1-999 - Abstract
Over the past decade, safeguarding marine life and aquatic ecosystems against deleterious dye pollutants has emerged as a paramount concern. Methylene blue dye stands out as one such pollutant capable of inflicting irreversible damage to marine ecosystems even at minute concentrations. Addressing this pressing issue, we synthesized a novel CoMnFe2O4/graphene oxide nanocomposite employing a microwave-ultrasonic method. This composite, comprising soft superparamagnetic CoMnFe2O4 hollow microstructures integrated onto graphene oxide surfaces, revealed a mesoporous structure with a notably high surface area, which was about 96.4654 m2.g−1. Various analytical techniques were employed to scrutinize the crystal structure, functional groups, surface chemical composition, and morphologies of the synthesized CoMnFe2O4/graphene oxide nanocomposite (X-ray diffraction, Fourier-Transform Infrared Spectroscopy, energy-dispersive X-ray spectroscopy, field emission scanning electron microscopy, and high-resolution transmission electron microscopy). The CoMnFe2O4 crystal phase appears to be cubic in the X-ray diffraction with a 28.91 nm Avg. crystallite size. The measured band gap energies for the CoMnFe2O4, graphene oxide, and CoMnFe2O4/graphene oxide nanocomposite are 2.23 eV, 2.90 eV, and 1.89 eV, respectively. Remarkably, under visible light irradiation, the nanocomposite exhibited an impressive degradation efficiency of 97.54 % within just fifty minutes (at pH = 7, Methylene blue conc. = 15 mg/L, and catalyst dose = 0.05 g.), attributed to a photo degradation rate constant (k value) reaching 0.07330 min−1. Notably, this efficiency nearly doubled with the introduction of H2O2 peroxide. The outstanding recyclability of the CoMnFe2O4/graphene oxide nanocomposite, sustaining optimal performance over four cycles without significant degradation, underscores its potential for long-term environmental remediation efforts. Moreover, its magnetic extractability from contaminated solutions enhances its suitability for advanced environmental applications.
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- 2024
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18. Comparison of Minimally Invasive and Open Colon Surgery for the Treatment of T4 Colon Cancer in a Tertiary Care Institution Using Propensity Score Matching Analysis
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İbrahim H. Özata, Salih N. Karahan, Atilla D. Kahraman, Serkan Sucu, Mesut Yeşilsoy, Emre Bozkurt, Emre Özoran, Derya S. Uymaz, İbrahim F. Azamat, Serkan Zenger, Ahmet Rencüzoğulları, Dursun Buğra, and Emre Balık
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colorectal neoplasms ,colorectal surgery ,minimally invasive surgical procedures ,Specialties of internal medicine ,RC581-951 - Abstract
Aim: Despite the increasing popularity of minimally invasive surgery (MIS) in recent years, its efficacy in treating T4 colon cancer remains a subject of ongoing debate. This study aimed to assess the perioperative and oncological outcomes of MIS for T4 colon cancer in comparison with open surgery (OP). Method: We conducted a retrospective cohort analysis on 181 consecutive patients who underwent a T4 colon cancer resection through either MIS or OP between December 2014 and September 2021. Converted patients were evaluated in the MIS group according to the intention-to-treat principle. Propensity score matching (PSM) was employed based on age, gender, American Society of Anesthesiologists score, and the T-stage subgroup (T4a and T4b) to control for potentially confounding factors. Demographics short-term and long-term oncological outcomes were evaluated and compared between the two groups. Results: Post-PSM resulted in 49 patients in each group. Both groups were comparable in terms of patient demographics, clinical stage at diagnosis, and postoperative morbidity. The median operative time was longer in the MIS group (167 vs. 132 minutes, p
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- 2024
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19. Laboratory Investigation of Haematological and Biochemical Parameters Throughout The Periparturient Phase in Fat-Tailed Ewes
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Rawia M. Ibrahim, Yahia A. Amin, Ibrahim F. Rehan, frantisek zigo, Zuzana Farkašová, and Safaa Y. Nour
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late gestation ,post-partum ,laboratory diagnosis ,ferritin ,sheep ,Agriculture ,Veterinary medicine ,SF600-1100 - Abstract
The periparturient period is defined as the period immediately preceding and following parturition. Dairy animals encounter obstacles during this period. The goal of the study was to identify the various physiological stressors that ewes encounter during this time and the kind of special care that should be offered to them in order to deal with this problem. Thirty fat-tailed ewes were used in this research. All animals were examined clinically and ultrasonography. Blood samples were taken firstly during the diestrus stage (group 1), then during late gestation (group 2), and finally during postpartum (Group 3). Haematological and biochemical parameters were assessed. The results revealed a significant decrease in RBCs count, haemoglobin concentrations, and hematocrite % during the periparturient phase compared to the diestrus phase. WBCs count exhibited a significant increase during the periparturient period. The metabolic profile involves total protein and albumin, which decreased significantly during the periparturient period compared to the diestrus phase, while urea concentration showed the opposite trend. Total cholesterol and triglycerides showed a significant increase over the periparturient phase. Mineral investigations indicate that ferritin and calcium concentrations decreased significantly throughout the periparturient period compared to the diestrus phase, while phosphorus and magnesium concentrations showed non-significant changes. The study revealed a wide variety of alterations in several clinical, haematological, and biochemical parameters of ewe’s blood throughout the periparturient phase. This study will provide an opportunity to identify management changes for the prophylaxis of ovine diseases, improving overall herd health and animal welfare.
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- 2024
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20. Targeting the epidermal growth factor receptor (EGFR/ErbB) for the potential treatment of renal pathologies
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Mohamed Tawengi, Yazan Al-Dali, Abdelaziz Tawengi, Ibrahim F. Benter, and Saghir Akhtar
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epidermal growth factor receptor ,ErbB ,diabetic nephropathy ,hypertensive nephropathy ,glomerulonephritis ,chronic kidney disease ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Epidermal growth factor receptor (EGFR), which is referred to as ErbB1/HER1, is the prototype of the EGFR family of receptor tyrosine kinases which also comprises ErbB2 (Neu, HER2), ErbB3 (HER3), and ErbB4 (HER4). EGFR, along with other ErbBs, is expressed in the kidney tubules and is physiologically involved in nephrogenesis and tissue repair, mainly following acute kidney injury. However, its sustained activation is linked to several kidney pathologies, including diabetic nephropathy, hypertensive nephropathy, glomerulonephritis, chronic kidney disease, and renal fibrosis. This review aims to provide a summary of the recent findings regarding the consequences of EGFR activation in several key renal pathologies. We also discuss the potential interplay between EGFR and the reno-protective angiotensin-(1–7) (Ang-(1–7), a heptapeptide member of the renin-angiotensin-aldosterone system that counter-regulates the actions of angiotensin II. Ang-(1–7)-mediated inhibition of EGFR transactivation might represent a potential mechanism of action for its renoprotection. Our review suggests that there is a significant body of evidence supporting the potential inhibition of EGFR/ErbB, and/or administration of Ang-(1–7), as potential novel therapeutic strategies in the treatment of renal pathologies. Thus, EGFR inhibitors such as Gefitinib and Erlinotib that have an acceptable safety profile and have been clinically used in cancer chemotherapy since their FDA approval in the early 2000s, might be considered for repurposing in the treatment of renal pathologies.
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- 2024
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21. Biomimetic strategies for the deputization of proteoglycan functions
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Ibrahim F. Rehan, Asmaa Elnagar, František Zigo, Ahmed Sayed-Ahmed, and Shuhei Yamada
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proteoglycan ,glycosaminoglycan ,mimetic molecule ,graft copolymer ,therapeutic application ,Biology (General) ,QH301-705.5 - Abstract
Proteoglycans (PGs), which have glycosaminoglycan chains attached to their protein cores, are essential for maintaining the morphology and function of healthy body tissues. Extracellular PGs perform various functions, classified into the following four categories: i) the modulation of tissue mechanical properties; ii) the regulation and protection of the extracellular matrix; iii) protein sequestration; and iv) the regulation of cell signaling. The depletion of PGs may significantly impair tissue function, encompassing compromised mechanical characteristics and unregulated inflammatory responses. Since PGs play critical roles in the function of healthy tissues and their synthesis is complex, the development of PG mimetic molecules that recapitulate PG functions for tissue engineering and therapeutic applications has attracted the interest of researchers for more than 20 years. These approaches have ranged from semisynthetic graft copolymers to recombinant PG domains produced by cells that have undergone genetic modifications. This review discusses some essential extracellular PG functions and approaches to mimicking these functions.
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- 2024
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22. SARS‐CoV‐2 seroprevalence and associated factors among people living with HIV in Sierra Leone
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Wei Sun, Jinwen Song, Sulaiman Lakoh, Jinquan Chen, Abdulai T. Jalloh, Foday Sahr, Stephen Sevalie, Darlinda F. Jiba, Ibrahim F. Kamara, Yingrong Xin, Zhongyang Ye, Feng Ding, Li‐Zhong Dai, Ligui Wang, Xishui Zheng, and Guang Yang
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HIV infection ,immunoglobulin G ,SARS‐CoV‐2 ,seroepidemiologic studies ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background Human immunodeficiency virus (HIV) infection is an important risk factor for Coronavirus Disease 2019 (COVID‐19), but data on the prevalence of COVID‐19 among people living with HIV (PLWH) is limited in low‐income countries. Our aim was to assess the seroprevalence of the severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) specific antibodies and associated factors among PLWH in Sierra Leone. Methods We conducted a cross‐sectional survey of PLWH aged 18 years or older in Sierra Leone between August 2022 and January 2023. Participants were tested for SARS‐CoV‐2 antibodies using a rapid SARS‐CoV‐2 antibody (immunoglobulin M/immunoglobulin G [IgG]) kits. Stepwise logistic regression was used to explore factors associated with SARS‐CoV‐2 antibody seroprevalence with a significance level of p
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- 2024
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23. The Financial Crisis Affecting the Construction Sector
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Zainab A. Mahdi and Ibrahim F. Muhsin
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Financial crisis ,Contractor ,Construction sector ,Effects of the crisis ,Procedures ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Today's world is witnessing continuous development, particularly in the construction sector, which is meeting the rising population and their need for essential facilities; this is one of the reasons why construction is witnessing such development. Different crises significantly affect this sector, including the financial crisis in different countries. This paper identifies the financial crises, their categories, and the reasons for appearing them. Inflation, currency exchange fluctuations, and the drop in global oil prices are the most important reasons for the emergence of external financial crises, especially in Iraq, which considers oil an important economic resource for its budget. The unexpected global financial events led to an economic collapse that affected the construction sector. Many large projects in Iraq have been put on hold as a result of these conditions due to the country's lack of resources to address these crises. This paper aims to study and identify potential crises and potential responses and mitigation strategies for each crisis stage.
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- 2024
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24. A method of building information modelling implementation for structural engineering firms
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Ibrahim F. Varouqa and Moawiah A. Alnsour
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Building Information Modelling Method ,Science - Abstract
Building Information Modelling (BIM), a new concept and methodology, has received much attention lately. Various Structural Engineering Firms (SEFs) have observed substantial competitive benefits after its deployment. BIM offers a wide range of advantages, but its capacity has not even been completely exploited. The challenges of firm implementation, a procedure that necessitates significant alterations in firm business structure, are a major factor in this. However, there hasn't been much in-depth research on the assessment and integration of the research around the application of BIM in firms. To address the planning phase's complexity, which makes implementing BIM in these workplaces challenging, this article provides a framework for BIM deployment in the SEF. Additionally, a brand-new hybrid African Buffalo and African Vulture Optimization (AB-AVO) has been created to assess the state of technology. The technique suggested for BIM execution within SEF obviously and effectively recognises the firm's expectations and resources, sets out the needs required to create the BIM technique, and offers technical and clinical suggestions for monitoring and planning the execution. It is categorised by resource utilization, versatility, and adaptability. • This paper introduces a new concept and methodology of using BIM • The technique suggested for BIM execution within SEF obviously and effectively recognises the firm's expectations and resources • The method establishes guidelines for structural firm to adopt BIM in their monitoring, and planning the execution
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- 2024
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25. Structural simplification of Osimertinib to elaborate new indolyle-pyrimidine-5-carbonitrile derivatives with Anti-proliferative and Anti-SARS-CoV-2 activities assisted by molecular dynamic simulation
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Elewa, Safaa I., Nassar, Ibrahim F., El-Farargy, Ahmed F., Elshaier, Yaseen A.M.M., Kutkat, Omnia, Elfiky, Asmaa M., El-Rashedy, Ahmed A., and Mansour, Eman
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- 2024
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26. Unveiling the therapeutic and nutritious potential of Vigna unguiculata in line with its phytochemistry
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Sardar, Haseeba, Hadi, Fazal, Alam, Waqas, Halawani, Ibrahim F., Alzahrani, Fuad M., Saleem, Rimah Abdullah, Cerqua, Ida, Khan, Haroon, and Capasso, Raffaele
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- 2024
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27. COVID-19 mRNA vaccination responses in individuals with sickle cell disease: an ASH RC Sickle Cell Research Network Study
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Anderson, Alan R., Andemariam, Biree, Brandow, Amanda, Campbell, Andrew, Cohen, Alice, Darbari, Deepika, El Rassi, Fuad, ield, Joshua, Fung, Ellen, Gee, Beatrice, Ibrahim, Ibrahim, Idowu, Modupe, Kanter, Julie, Klings, Elizabeth S., King, Allison, Kutlar, Abdullah, Lebensburger, Jeffrey D., Leavey, Patrick, Liem, Robert I., Manwani, Deepa, Narang, Shalu, Pace, Betty, Quinn, Charles T., Rivlin, Kenneth, Strouse, John J., Thompson, Alexis A., Tubman, Venée N., Vichinsky, Elliot, Walters, Mark, Brandow, Amanda M., Vichinsky, Elliott, Leavey, Patrick J., Nero, Alecia, Ibrahim, Ibrahim F., Field, Joshua J., Baer, Amanda, Soto-Calderon, Haideliza, Vincent, Lauren, Zhao, Yan, Santos, Jefferson J. S., Hensley, Scott E., Mortier, Nicole, Lanzkron, Sophie, Neuberg, Donna, and Abrams, Charles S.
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- 2024
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28. Synthesis of CoMnFe2O4 hollow microstructure decorated GO for photocatalytic degradation of organic dyes
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Waheed, Ibrahim F., Awsaj, Maha M., Dahham, Omar S., Jabbar, Mustafa Qutaiba, Al‑Abady, Faiz M., and Al-Samarrai, Mohammed Abbas Fadhil
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- 2024
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29. Tailoring caplacizumab administration using ADAMTS13 activity for immune-mediated thrombotic thrombocytopenic purpura
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Yates, Sean G., Hofmann, Sandra L., Ibrahim, Ibrahim F., Shen, Yu-Min P., Green, Allen P., and Sarode, Ravi
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- 2024
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30. Resistance Training Using VAriable Resistance Suit (VARS) Increased Isometric and Isokinetic Muscle Strength
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Ibrahim F. Kadhim, Chitra Banarjee, Jirui Fu, Renoa Choudhury, L. Colby Mangum, David H. Fukuda, Jeffrey R. Stout, Joel T. Cramer, and Joon-Hyuk Park
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Resistance training ,variable resistance suit ,wearables ,hypertrophy ,muscle strength ,muscle size ,Medical technology ,R855-855.5 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
While resistance training promotes muscle hypertrophy and strength, accessibility of equipment is a barrier. This study evaluated a wearable VAriable Resistance Suit (VARS) as a novel and alternative method to achieve muscle strength improvement. It was hypothesized that by providing adjustable, bi-directional and speed dependent resistance, VARS can target specific muscles to improve muscle strength via an accessible and portable device. Twelve untrained healthy male adults (22.08 ± 4.1 years old) participated in an 8-week long resistance training using VARS to strengthen four muscles (biceps brachii, triceps brachii, biceps femoris, rectus femoris) of their non-dominant arm and leg using VARS. The results showed significant improvements in the muscle strength measured by isokinetic dynamometer – 49.9±9.6% increase in isokinetic force and 30.6±7.6% increase in isometric force. Muscle size and body composition were also assessed using ultrasound imaging and bioelectrical impedance analysis, which did not show significant changes. The study demonstrates the efficacy and feasibility of VARS as a resistance training tool to achieve muscle strength improvement and its potential extension to clinical populations.
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- 2024
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31. Heavy consumption of garlic (Allium sativum) exert nephro- and pulmonary toxicity at maternal and embryonic level in the Albino rats
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Zeinab Kamal, Zeinab Al-Amgad, František Zigo, Zuzana Farkašová, Martina Zigová, Adel M. Ahmad, Alaa H. Said, and Ibrahim F. Rehan
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Bax ,fetus ,garlic ,kidney ,lung ,Veterinary medicine ,SF600-1100 - Abstract
Despite the health benefits of herbals, random misuse of such therapy without consult tends to participate in public health issues. This study describes the nephro-and pulmonary toxicity effects of heavy consumption of garlic (Allium sativum) during developmental period. Two groups of ten healthy pregnant female Albino rats each were formed from the 20 in total. Gavages of distilled water were administered to the control group. Since garlic group rats orally received garlic aqueous extract (GAE) 1 ml/rat daily from gestational day (GD) 6 to 19. Kidney functions and lipid biomarkers were assayed along with histopathological investigations. Our results confirmed that the group that received garlic had significantly increased serum levels of urea, cholesterol, triglycerides and LDL. Moreover, the foetal and maternal tissues of the kidney and lung exhibited a varying degree of histopathological manifestations characterized by kidney necrosis and lung haemorrhage, severe congestion, and thickening of the blood vessels. Renal and pulmonary fibrosis were detectable by Masson’s trichrome. A positive expression of the foetal kidney and placental tissues towards Bax protein was noticed. In conclusion, depending on existing findings, the administration of higher concentrations of garlic could explode renal and pulmonary toxicity and decrease the rat’s weight.
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- 2023
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32. Selected hematological parameters and oxidative stress in red blood cells (RBCs) after accidental cases of nitrate toxicity in the goat fed cabbage
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Atef M. Khalil, Ibrahim F. Rehan, František Zigo, Šimon Halás, Zuzana Farkašová, and Hassan M. Diab
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Nitrate poisoning ,cabbage ,clinical signs ,hematological analyzes ,oxidative stress ,Veterinary medicine ,SF600-1100 - Abstract
Nitrate poisoning due to the consumption of cabbages was diagnosed in a small goat flock, in Qena city, Egypt. The methylene blue 1% antidote (1 mg/kg BW) was given intravenously to the poisoned goats. Nitrate poisoning was confirmed in blood plasma, saliva, urine, and cabbage dry matter samples. The dark brown blood and methemoglobin fraction were 47.25 ± 0.58%. Green cabbage containing 7.1% nitrate on dried materials was fed to the goats. The nitrate concentration in the saliva was (59.50 ± 4.67), compared to the healthy goats reared in the same area and tested positive in the plasma and urine of intoxicated goats. Intoxication induced a significant decline in the Red Blood Cells count, hemoglobin concentration, and HCT % (P
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- 2023
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33. The Impact of Strategic Notetaking on EFL Learners' Academic Performance in Jordan
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Almaagbh, Ibrahim F. F.
- Abstract
This study investigates the impact of strategic notetaking on English as Foreign Language (EFL) learners' academic performance among university students in Jordan. Thus, we hypothesized that there is a significant and positive impact of strategic note-taking on EFL learners' academic performance. To confirm this hypothesis, descriptive research design was applied in this study. 384 (three hundred and eighty-four) respondents were randomly selected from the four public universities in Jordan. This study adapted instruments which include strategic note taking and students' academic performance measurement items and the data obtained was analysed through Statistical Package for the Social Science (SPSS-22). The result showed that the strategic note taking (i.e. independent variable) has significant effects on EFL learners' academic performance (R2 =0.919). Moreover, the strategic notetaking made the significant contribution (Beta= 0.449; t= 18.714; P <0.05) to the prediction of EFL learners' academic performance. In line with the findings, this study emphasised and explained the impact of strategic notetaking and how to improve EFL learners' level of notetaking for better academic performance in Jordan.
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- 2020
34. Indolyl imine compounds as multi-target agents; synthesis, antidiabetic, anticholinesterase, antioxidant activities and molecular modeling
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Ceyhan, Sadık M., Zengin, İrem Nur, Bingul, Murat, Sahin, Hasan, Boga, Mehmet, Saglam, Mehmet F., Kandemir, Hakan, and Sengul, Ibrahim F.
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- 2024
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35. COeCO: A new [formula omitted]-delayed conversion-electron spectroscopy setup for low-energy ISOL beams at the ALTO facility in Orsay
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Tocabens, G., Delafosse, C., Verney, D., Cantacuzène, E., Cheikh Mhamed, M., Deloncle, I., Didierjean, F., Dong, W., Gaulard, C., Genolini, B., Guillot, J., Hammache, F., Harrouz, S., Ibrahim, F., Jacob, H., Kaci, M., de Lara, A., de Séréville, N., Le Blanc, F., Lebois, M., Lozeva, R., Matea, I., Roussière, B., Segovia-Miranda, A., and Thoër, R.
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- 2024
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36. Alkaloids as drug leads in Alzheimer's treatment: Mechanistic and therapeutic insights
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Rezaul Islam, Md., Akash, Shopnil, Murshedul Islam, Mohammed, Sarkar, Nadia, Kumer, Ajoy, Chakraborty, Sandip, Dhama, Kuldeep, Ahmed Al-Shaeri, Majed, Anwar, Yasir, Wilairatana, Polrat, Rauf, Abdur, Halawani, Ibrahim F., Alzahrani, Fuad M., and Khan, Haroon
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- 2024
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37. Comparative assessment of anti-cancer drugs against NUDT15 variants to prevent leucopenia side effect in leukemia patients
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V., Janakiraman, M., Sudhan, Alsharif, Khalaf F., Halawani, Ibrahim F., Ahmed, Shiek S. S. J., and Patil, Shankargouda
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- 2023
- Full Text
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38. Erbium-doped (Pb0.9-Er0.01-Zr0.09) and (Pb0.9-Er0.01-Zr0.045-Ti0.045) nano-crystalline films and nano-rods ceramic synthesis by sol–gel technique for energy-storage application
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Ibrahim, F. A. and El-Desoky, M. M.
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- 2023
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39. Pleural fluid microbiota as a biomarker for malignancy and prognosis
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Kwok, Benjamin, Wu, Benjamin G., Kocak, Ibrahim F., Sulaiman, Imran, Schluger, Rosemary, Li, Yonghua, Anwer, Raheel, Goparaju, Chandra, Ryan, Daniel J., Sagatelian, Marla, Dreier, Matthew S., Murthy, Vivek, Rafeq, Samaan, Michaud, Gaetane C., Sterman, Daniel H., Bessich, Jamie L., Pass, Harvey I., Segal, Leopoldo N., and Tsay, Jun-Chieh J.
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- 2023
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40. Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria
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Olawoye, Idowu B., Oluniyi, Paul E., Oguzie, Judith U., Uwanibe, Jessica N., Kayode, Tolulope A., Olumade, Testimony J., Ajogbasile, Fehintola V., Parker, Edyth, Eromon, Philomena E., Abechi, Priscilla, Sobajo, Tope A., Ugwu, Chinedu A., George, Uwem E., Ayoade, Femi, Akano, Kazeem, Oyejide, Nicholas E., Nosamiefan, Iguosadolo, Fred-Akintunwa, Iyanuoluwa, Adedotun-Sulaiman, Kemi, Brimmo, Farida B., Adegboyega, Babatunde B., Philip, Courage, Adeleke, Richard A., Chukwu, Grace C., Ahmed, Muhammad I., Ope-Ewe, Oludayo O., Otitoola, Shobi G., Ogunsanya, Olusola A., Saibu, Mudasiru F., Sijuwola, Ayotunde E., Ezekiel, Grace O., John, Oluwagboadurami G., Akin-John, Julie O., Akinlo, Oluwasemilogo O., Fayemi, Olanrewaju O., Ipaye, Testimony O., Nwodo, Deborah C., Omoniyi, Abolade E., Omwanghe, Iyobosa B., Terkuma, Christabel A., Okolie, Johnson, Ayo-Ale, Olubukola, Ikponmwosa, Odia, Benevolence, Ebo, Naregose, Grace O., Patience, Akhilomen E., Blessing, Osiemi, Micheal, Airende, Jacqueline, Agbukor, Aiyepada, John O., Ebhodaghe, Paulson, Racheal, Omiunu, Rita, Esumeh, Rosemary, Giwa E., Solomon, Ehikhametalor, Anieno, Ekanem, Edna, Yerumoh, Chris, Aire O., Donatus, Adomeh I., Ogbaini-Emovon, Ephraim, Tatfeng, Mirabeau Y., Omunakwe, Hannah E., Bob-Manuel, Mienye, Ahmed, Rahaman A., Onwuamah, Chika K., Shaibu, Joseph O., Okwuraiwe, Azuka, Ataga, Anthony E., Bock-Oruma, Andrew, Daramola, Funmi, Yusuf, Ibrahim F., Fajola, Akinwumi, Ntia, Nsikak-Abasi, Ekpo, Julie J., Moses, Anietie E., Moore-Igwe, Beatrice W., Fakayode, Oluwatosin E., Akinola, Monilade, Kida, Ibrahim M., Oderinde, Bamidele S., Wudiri, Zara W., Adeyemi, Oluwapelumi O., Akanbi, Olusola A., Ahumibe, Anthony, Akinpelu, Afolabi, Ayansola, Oyeronke, Babatunde, Olajumoke, Omoare, Adesuyi A., Chukwu, Chimaobi, Mba, Nwando G., Omoruyi, Ewean C., Olisa, Olasunkanmi, Akande, Olatunji K., Nwafor, Ifeanyi E., Ekeh, Matthew A., Ndoma, Erim, Ewah, Richard L., Duruihuoma, Rosemary O., Abu, Augustine, Odeh, Elizabeth, Onyia, Venatius, Ojide, Chiedozie K., Okoro, Sylvanus, Igwe, Daniel, Ogah, Emeka O., Khan, Kamran, Ajayi, Nnennaya A., Ugwu, Collins N., Ukwaja, Kingsley N., Ugwu, Ngozi I., Abejegah, Chukwuyem, Adedosu, Nelson, Ayodeji, Olufemi, Liasu, Ahmed A., Isamotu, Rafiu O., Gadzama, Galadima, Petros, Brittany A., Siddle, Katherine J., Schaffner, Stephen F., Akpede, George, Erameh, Cyril Oshomah, Baba, Marycelin M., Oladiji, Femi, Audu, Rosemary, Ndodo, Nnaemeka, Fowotade, Adeola, Okogbenin, Sylvanus, Okokhere, Peter O., Park, Danny J., Mcannis, Bronwyn L., Adetifa, Ifedayo M., Ihekweazu, Chikwe, Salako, Babatunde L., Tomori, Oyewale, Happi, Anise N., Folarin, Onikepe A., Andersen, Kristian G., Sabeti, Pardis C., and Happi, Christian T.
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- 2023
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41. Critical examination of Saudi restructuring law in the light of United Kingdom and United States experiences
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Alfawzan, Faisal Ibrahim F., Sheehan, Duncan, and McCormack, Gerard
- Abstract
The evolution of the 'rescue culture' and rehabilitation of companies and businesses in corporate insolvency has received global attention for decades. Chapter 11 in the US Bankruptcy Code 1978 is thought to have significantly influenced the development of corporate rescue processes across the globe. Indeed, Chapter 11 has widely been considered the gold standard for corporate restructuring that many jurisdictions have attempted to emulate. Moreover, the socio-economic benefits of adopting rescue-oriented insolvency legislation have been actively promoted by international organisations such as the World Bank, the United Nations Commission on International Trade Law (UNCITRAL) and the International Monetary Fund (IMF). Providing formal restructuring procedures in addition and as an alternative to liquidation procedures is regarded by these organisations as a criterion for the international respectability of a nation's insolvency laws. Corporate reorganisation is based on the presence of a distinction between the going concern value of the distressed business and its liquidation value. If the going concern value of a company is higher than the value extracted from the liquidation of its assets, the reorganisation procedure may be an attractive alternative to liquidation. In this scenario, it would be more advantageous for creditors if the business continues to operate, and it would be in the interest of society if a firm that is worth more alive than dead is successfully restructured. The enactment of the Bankruptcy Preventative Settlement (BPS) Law in 1996 represented the first step toward providing formal rescue procedures for distressed businesses in Saudi Arabia. However, that law was criticised and rarely applied in practice mainly due to its brief content. Given the absence of comprehensive formal restructuring procedures provided by the BPS, the outcome of restructuring cases relied heavily on the court's discretion, which was highly unpredictable. Modernising the laws governing business activities has been one of the central initiatives taken by the Saudi government to attract foreign investment. This is viewed as essential to accomplishing the ultimate goal of achieving the Kingdom's 2030 Vision: the diversification of economic sources and the reduction of the country's dependence on oil as a main source of income. One of the remarkable changes in the Saudi commercial law area is the introduction of the first comprehensive Bankruptcy Law (BL) 2018, which was enacted in February 2018. BL 2018 provides two restructuring procedures: preventative settlement (PS) and financial restructuring (FR). This thesis examines the rules of corporate restructuring under these two procedures with reference to the UK and US's invaluable experiences. The examination focuses on four particular aspects of restructuring procedures: access to restructuring procedures, control of companies during procedures, moratorium against creditors' actions, and restructuring plans. Referring to the laws in the UK and the US regarding the above aspects is highly important, as the Saudi legal system can learn valuable lessons from these well-developed jurisdictions. Moreover, the UK's and the US's experiences are helpful in progressing Saudi restructuring law, especially because the UK and the US were two of the main jurisdictions that Saudi lawmakers looked at as models when they sought to modernise bankruptcy law in general and restructuring procedures specifically.
- Published
- 2022
42. High prevalence of current tobacco smoking among patients with tuberculosis and people living with HIV in Jordan: A cross-sectional survey
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Ayaka Teshima, Ayah A. Shatnawi, Srinath Satyanarayana, Yousef S. Khader, Ibrahim F. Maia, and Nevin C. Wilson
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tuberculosis ,plhiv ,tobacco use ,migration health ,socioeconomic status ,Diseases of the respiratory system ,RC705-779 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction Continued smoking by patients with tuberculosis (TB) and people living with HIV (PLHIV) leads to adverse treatment outcomes. Estimates of tobacco use among the population are scarce in the Eastern Mediterranean region, where the burden of TB and HIV is also low but highly variable. This study determined the prevalence of current smoking and assessed factors associated with current smoking among patients with TB and PLHIV in Jordan. Methods We analyzed data from the Jordan Knowledge, Attitude, and Practices survey in 2021. Information on current tobacco use, including products and frequency of smoking, was collected from 452 patients with TB and 152 PLHIV. We performed multivariable logistic regression to assess the sociodemographic characteristics independently associated with current smoking. Results Prevalence of current smoking was 43.8% among TB patients and 67.8 % among PLHIV, and conventional cigarettes were the most used tobacco products. The prevalence of current smoking among patients with TB was higher among males (AOR=8.20; 95% CI: 5.05–13.32), Jordanians (AOR=5.37; 95% CI: 2.66– 10.86) and Syrians (AOR=4.13; 95% CI: 1.60–10.67), and those experiencing financial difficulties (AOR=2.83; 95% CI: 1.69–4.74). The prevalence of current smoking among PLHIV was higher in those with financial difficulties (AOR=3.13; 95% CI: 1.19–8.27). Conclusions Nearly half of the patients with TB and PLHIV were current tobacco smokers, higher than the general population. There is an urgent need to investigate the reasons for such a high smoking prevalence and introduce and strengthen smoking cessation services under the TB and HIV control programs.
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- 2023
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43. Smart irrigation system using IoT and machine learning methods.
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Ahmed A. Esmail, Manar A. Ibrahim, Sayed M. Abdallah, Ahmed E. Radwan, Haya K. Elsonbaty, Mohamed A. Elsayed, Noure A. Elnakeib, Merit Samir Dawoud, Amir El-Ghamry, Khaled M. Fouad, and Ibrahim F. Moawad
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- 2023
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44. Prediction of student performance using machine learning techniques.
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Mohamed Mohsen Elsaid Khoudier, Raneem Hany Mahmoud Abdelnaby, Zeyad Mohamed Eldamnhoury, Salma Raafat Ali Abouzeid, Ghada K. El-Monayer, Nada M. Enan, Amir El-Ghamry, Khaled M. Fouad, and Ibrahim F. Moawad
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- 2023
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45. Towards Developing a Metaverse Authentication Model for Mobile Features.
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Ibrahim F. Ibrahim, Mohammed M. Morsey, Abeer M. Mahmoud, and El-Sayed M. El-Horbaty
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- 2023
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46. mecA and fdh: markers of pathogenicity and commensalism in Staphylococcus epidermidis of pediatric origin from Pakistan
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Ahmad, Saghir, Rahman, Hazir, Mumtaz, Sumbal, Qasim, Muhammad, Rahman, Zia Ur, Alsuwat, Meshari A., Halawani, Ibrahim F., Alzahrani, Fuad M., and Ali, Sajid
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- 2024
- Full Text
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47. Comparative assessment of anti-cancer drugs against NUDT15 variants to prevent leucopenia side effect in leukemia patients
- Author
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Janakiraman V., Sudhan M., Khalaf F. Alsharif, Ibrahim F. Halawani, Shiek S. S. J. Ahmed, and Shankargouda Patil
- Subjects
NUDT15 ,Leukemia ,Drugs ,Treatment ,Docking ,Simulation ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Human nucleotide triphosphate diphosphatase (NUDT15) is one of the essential proteins involved in the hydrolysis of anti-cancer drugs against leukemia. Polymorphisms in NUDT15 significantly affect the hydrolysis activity that leads to side effects, including leucopenia. Drugs having a better affinity with NUDT15 protein and contributing stable conformation may benefit patients from leucopenia. Most frequent NUDT15 polymorphisms causing structure variability and their association with leukemia were screened. The selected protein variants and anti-cancer drug structures were collected. Further, molecular docking was performed between drugs and NUDT15 variants along with the wild-type. Finally, molecular dynamics were executed for 100 ns to understand the stability of the protein with the anti-cancer drug based on molecular trajectories. Results Three-dimensional structures of NUDT15 wild, the most frequent variants (Val18Ile, Arg139Cys, and Arg139), and the anti-cancer drugs (azathioprine, mercaptopurine, and thioguanine) were selected and retrieved from structure databases. On molecular docking the binding energies of anti-cancer drugs against NUDT15 structures ranged from − 5.0 to − 5.9 kcal/mol. Among them, azathioprine showed the highest affinities (− 7.3 kcal/mol) for the wild and variant structures. Additionally, the molecular dynamics suggest all analyzed NUDT15 were stable with azathioprine based on the dynamic trajectories. Conclusion Our results suggest azathioprine could be the preferable anti-cancer drug for the population with NUDT15 variants that could effectively be hydrolyzed as evidenced by molecular docking and dynamic simulation.
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- 2023
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48. Leveraging technology-driven strategies to untangle omics big data: circumventing roadblocks in clinical facets of oral cancer
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Kshreeraja S. Satish, Kamatchi Sundara Saravanan, Dominic Augustine, Ganesan Rajalekshmi Saraswathy, Sowmya S. V, Samar Saeed Khan, Vanishri C. H, Shreshtha Chakraborty, Prizvan Lawrence Dsouza, Kavya H. N, Ibrahim F. Halawani, Fuad M. Alzahrani, Khalid J. Alzahrani, and Shankargouda Patil
- Subjects
oral cancer ,omics ,machine learning ,diagnosis ,prognosis ,therapy ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Oral cancer is one of the 19most rapidly progressing cancers associated with significant mortality, owing to its extreme degree of invasiveness and aggressive inclination. The early occurrences of this cancer can be clinically deceiving leading to a poor overall survival rate. The primary concerns from a clinical perspective include delayed diagnosis, rapid disease progression, resistance to various chemotherapeutic regimens, and aggressive metastasis, which collectively pose a substantial threat to prognosis. Conventional clinical practices observed since antiquity no longer offer the best possible options to circumvent these roadblocks. The world of current cancer research has been revolutionized with the advent of state-of-the-art technology-driven strategies that offer a ray of hope in confronting said challenges by highlighting the crucial underlying molecular mechanisms and drivers. In recent years, bioinformatics and Machine Learning (ML) techniques have enhanced the possibility of early detection, evaluation of prognosis, and individualization of therapy. This review elaborates on the application of the aforesaid techniques in unraveling potential hints from omics big data to address the complexities existing in various clinical facets of oral cancer. The first section demonstrates the utilization of omics data and ML to disentangle the impediments related to diagnosis. This includes the application of technology-based strategies to optimize early detection, classification, and staging via uncovering biomarkers and molecular signatures. Furthermore, breakthrough concepts such as salivaomics-driven non-invasive biomarker discovery and omics-complemented surgical interventions are articulated in detail. In the following part, the identification of novel disease-specific targets alongside potential therapeutic agents to confront oral cancer via omics-based methodologies is presented. Additionally, a special emphasis is placed on drug resistance, precision medicine, and drug repurposing. In the final section, we discuss the research approaches oriented toward unveiling the prognostic biomarkers and constructing prediction models to capture the metastatic potential of the tumors. Overall, we intend to provide a bird’s eye view of the various omics, bioinformatics, and ML approaches currently being used in oral cancer research through relevant case studies.
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- 2024
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49. Panoramic view of key cross-talks underpinning the oral squamous cell carcinoma stemness - unearthing the future opportunities
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Soujanya J. Vastrad, Giri Ritesh, Sowmya S. V, Ganesan Rajalekshmi Saraswathy, Dominic Augustine, Khalid J. Alzahrani, Fuad M. Alzahrani, Ibrahim F. Halawani, Heba Ashi, Mohammed Alshahrani, Reem Nabil Hassan, Hosam Ali Baeshen, Kamatchi Sundara Saravanan, Kshreeraja S. Satish, Pravallika Vutukuru, and Shankargouda Patil
- Subjects
cancer stem cell niche ,miRNA ,oral cancer ,oral squamous cell carcinoma ,oral microbiota ,stemness ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The clinical management of oral cancer is often frequented with challenges that arise from relapse, recurrence, invasion and resistance towards the cornerstone chemo and radiation therapies. The recent conceptual advancement in oncology has substantiated the role of cancer stem cells (CSC) as a predominant player of these intricacies. CSC are a sub-group of tumor population with inherent adroitness to self-renew with high plasticity. During tumor evolution, the structural and functional reprogramming persuades the cancer cells to acquire stem-cell like properties, thus presenting them with higher survival abilities and treatment resistance. An appraisal on key features that govern the stemness is of prime importance to confront the current challenges encountered in oral cancer. The nurturing niche of CSC for maintaining its stemness characteristics is thought to be modulated by complex multi-layered components encompassing neoplastic cells, extracellular matrix, acellular components, circulatory vessels, various cascading signaling molecules and stromal cells. This review focuses on recapitulating both intrinsic and extrinsic mechanisms that impart the stemness. There are contemplating evidences that demonstrate the role of transcription factors (TF) in sustaining the neoplastic stem cell’s pluripotency and plasticity alongside the miRNA in regulation of crucial genes involved in the transformation of normal oral mucosa to malignancy. This review illustrates the interplay between miRNA and various known TF of oral cancer such as c-Myc, SOX, STAT, NANOG and OCT in orchestrating the stemness and resistance features. Further, the cross-talks involved in tumor micro-environment inclusive of cytokines, macrophages, extra cellular matrix, angiogenesis leading pathways and influential factors of hypoxia on tumorigenesis and CSC survival have been elucidated. Finally, external factorial influence of oral microbiome gained due to the dysbiosis is also emphasized. There are growing confirmations of the possible roles of microbiomes in the progression of oral cancer. Given this, an attempt has been made to explore the potential links including EMT and signaling pathways towards resistance and stemness. This review provides a spectrum of understanding on stemness and progression of oral cancers at various regulatory levels along with their current therapeutic knowledge. These mechanisms could be exploited for future research to expand potential treatment strategies.
- Published
- 2023
- Full Text
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50. Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria
- Author
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Jaffe, Alexander L, Thomas, Alex D, He, Christine, Keren, Ray, Valentin-Alvarado, Luis E, Munk, Patrick, Bouma-Gregson, Keith, Farag, Ibrahim F, Amano, Yuki, Sachdeva, Rohan, West, Patrick T, and Banfield, Jillian F
- Subjects
Human Genome ,Genetics ,Biotechnology ,Animals ,Bacteria ,Ecosystem ,Evolution ,Molecular ,Genome ,Bacterial ,Genomics ,Metagenome ,Phylogeny ,RNA ,Ribosomal ,16S ,CPR bacteria ,animal microbiome ,bacterial evolution ,comparative genomics ,habitat transition ,Microbiology - Abstract
Candidate Phyla Radiation (CPR) bacteria are small, likely episymbiotic organisms found across Earth's ecosystems. Despite their prevalence, the distribution of CPR lineages across habitats and the genomic signatures of transitions among these habitats remain unclear. Here, we expand the genome inventory for Absconditabacteria (SR1), Gracilibacteria, and Saccharibacteria (TM7), CPR bacteria known to occur in both animal-associated and environmental microbiomes, and investigate variation in gene content with habitat of origin. By overlaying phylogeny with habitat information, we show that bacteria from these three lineages have undergone multiple transitions from environmental habitats into animal microbiomes. Based on co-occurrence analyses of hundreds of metagenomes, we extend the prior suggestion that certain Saccharibacteria have broad bacterial host ranges and constrain possible host relationships for Absconditabacteria and Gracilibacteria. Full-proteome analyses show that animal-associated Saccharibacteria have smaller gene repertoires than their environmental counterparts and are enriched in numerous protein families, including those likely functioning in amino acid metabolism, phage defense, and detoxification of peroxide. In contrast, some freshwater Saccharibacteria encode a putative rhodopsin. For protein families exhibiting the clearest patterns of differential habitat distribution, we compared protein and species phylogenies to estimate the incidence of lateral gene transfer and genomic loss occurring over the species tree. These analyses suggest that habitat transitions were likely not accompanied by large transfer or loss events but rather were associated with continuous proteome remodeling. Thus, we speculate that CPR habitat transitions were driven largely by availability of suitable host taxa and were reinforced by acquisition and loss of some capacities. IMPORTANCE Studying the genetic differences between related microorganisms from different environment types can indicate factors associated with their movement among habitats. This is particularly interesting for bacteria from the Candidate Phyla Radiation because their minimal metabolic capabilities require associations with microbial hosts. We found that shifts of Absconditabacteria, Gracilibacteria, and Saccharibacteria between environmental ecosystems and mammalian mouths/guts probably did not involve major episodes of gene gain and loss; rather, gradual genomic change likely followed habitat migration. The results inform our understanding of how little-known microorganisms establish in the human microbiota where they may ultimately impact health.
- Published
- 2021
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