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Bottom waters of the northeast Pacific continental shelf naturally experience localized hypoxic conditions, with significant influences on food webs and biogeochemical cycling. In August 2021, extreme hypoxia was detected from several measurement platforms along the southern British Columbia continental shelf, with oxygen concentration <60 μmol kg−1, and a difference from the seasonal climatology of more than 2 standard deviations. Early and intense remote upwelling and local density shifts were associated with an anomalously strong spring phytoplankton bloom, which likely stimulated localized respiration of subsurface organic matter. This event was concurrent with unsuitable habitat for Pacific halibut and calcite and aragonite undersaturation throughout most of the water column. The drivers of this extreme low oxygen event could be enhanced under future climate change, with potentially significant impacts on marine ecology and biogeochemistry. Plain Language Summary: Most marine organisms consume oxygen, and are therefore impacted when seawater oxygen concentrations reach low values. Extreme low oxygen concentrations are rare in the coastal waters of British Columbia, Canada. However, unusually strong oxygen depletion was observed off the coast of Vancouver Island during summer 2021. Unusually strong, early season upwelling winds along the California coast impacted Vancouver Island by causing nutrient‐rich water to be mixed into the surface, stimulating a large and earlier than usual spring phytoplankton bloom. Decomposition of the bloom‐derived organic carbon consumed local subsurface oxygen throughout the spring and summer. These subtle changes in timing and intensity of seasonal processes likely caused this low oxygen event, which was also associated with high concentrations of inorganic carbon, leading to ocean acidification. Such extreme low oxygen events, even if short‐lived, can have a significant impact on marine ecosystems, restricting the habitat available for groundfish species, such as Pacific halibut, and impacting the formation of carbonate shells by various organisms. The drivers of extreme low oxygen events are projected to intensify as climate change progresses. Key Points: Widespread extreme hypoxia was observed throughout the water column along the southern British Columbia continental shelf in summer 2021Early and intense upwelling followed by a strong biological response contributed to oxygen depletion in subsurface watersMultiple indices suggest that this extreme event was concurrent with unsuitable habitat conditions for groundfish and calcifying organisms [ABSTRACT FROM AUTHOR]

We measured the carbonate system (between 2015 and 2018) in an isolated and a well‐connected temperate estuary, both known for shellfish growth. We evaluated end‐member model estimates of inorganic carbon, alkalinity, pH, mineral saturation states (Ωa), and pH sensitivity (βDIC). We find winter conditions are estimated within observational uncertainty. Spring‐summer primary productivity elevates observed pH and Ωa above theoretical lines, beyond uncertainty. Both estuaries are sensitive in winter and likely to experience rapid pH changes with increased inorganic carbon inputs. Summer pH sensitivity is reduced by productivity and is least sensitive in the midsalinity region. We estimate carbon increased by up to 49 μmol kg−1, since the pre‐industrial period resulting in significant decreases in pH (0.2) and Ωa (0.5). The largest pH decrease occurred outside the minimum buffer zone, at higher salinities where carbon increase was greatest. The largest pH decrease occurred in winter, but the largest Ωa decrease occured in summer. Plain Language Summary: The ocean has absorbed about a third of human carbon dioxide emissions, increasing its acidity. Increasing acidity negatively affects marine organisms such as shellfish and fish that build calcium carbonate structures because they must spend more energy building and maintaining these structures. Most farmed and wild shellfish live in estuarine environments where acidification has not been widely studied. We made complete carbon system measurements over several years and across all seasons, in two distinct estuaries with significant aquaculture, where no previous carbon data existed. We estimated key acidification parameters and evaluated our ability to predict these parameters using only salinity, once properties in the freshest and saltiest water in the systems were well defined in all seasons. Our simple "mixing model" estimates winter conditions well, but during summer, phytoplankton blooms take up carbon and make conditions more favorable than predicted. We found that both estuaries are sensitive to future increases in carbon and are likely to experience rapid changes in chemistry. We estimate that human activity has already caused significant increases in inorganic carbon and associated acidification. The largest change critical to shell‐building organisms has occurred during the summer, and at higher salinities that are typical of grow sites. Key Points: End‐member mixing estimates winter pH and mineral saturation states in temperate estuaries within measurement uncertaintySeasonal productivity keeps pH and mineral saturation states above theoretical mixing curves by up to ∼1 pH and ∼2.5 Ωa, respectivelySince the preindustrial period nearshore estuarine pH declined by 0.05–0.2 with largest decline outside the minimum buffer zone [ABSTRACT FROM AUTHOR]

As the oceans absorb anthropogenic CO2 they become more acidic, a problem termed ocean acidification (OA). Since this increase in CO2 is occurring rapidly, OA may have profound implications for marine ecosystems. In the temperate northeast Pacific, fisheries play key economic and cultural roles and provide significant employment, especially in rural areas. In British Columbia (BC), sport (recreational) fishing generates more income than commercial fishing (including the expanding aquaculture industry). Salmon (fished recreationally and farmed) and Pacific Halibut are responsible for the majority of fishery-related income. This region naturally has relatively acidic (low pH) waters due to ocean circulation, and so may be particularly vulnerable to OA. We have analyzed available data to provide a current description of the marine ecosystem, focusing on vertical distributions of commercially harvested groups in BC in the context of local carbon and pH conditions. We then evaluated the potential impact of OA on this temperate marine system using currently available studies. Our results highlight significant knowledge gaps. Above trophic levels 2–3 (where most local fishery-income is generated), little is known about the direct impact of OA, and more importantly about the combined impact of multi-stressors, like temperature, that are also changing as our climate changes. There is evidence that OA may have indirect negative impacts on finfish through changes at lower trophic levels and in habitats. In particular, OA may lead to increased fish-killing algal blooms that can affect the lucrative salmon aquaculture industry. On the other hand, some species of locally farmed shellfish have been well-studied and exhibit significant negative direct impacts associated with OA, especially at the larval stage. We summarize the direct and indirect impacts of OA on all groups of marine organisms in this region and provide conclusions, ordered by immediacy and certainty. [ABSTRACT FROM AUTHOR]

Zooplankton in the ocean respond to visual and hydro-mechanical cues such as small-scale shear in turbulent flow. In addition, they form strong aggregations where currents intersect sloping bottoms. Strong and predictable tidal currents over a sill in Knight Inlet, Canada, make it an ideal location to investigate biological behaviour in turbulent cross-isobath flow. We examine acoustic data (38, 120 and 200 kHz) collected there during the daylight hours, when the dominant zooplankters, Euphausia pacifica have descended into low light levels at ∼90 m. As expected, these data reveal strong aggregations at the sill. However, they occur consistently 10–20 m below the preferred light depth of the animals. We have constructed a simple model of the flow to investigate this phenomenon. Tracks of individual animals are traced in the flow and a variety of zooplankton behaviours tested. Our results indicate that the euphausiids must actively swim downward when they encounter the bottom boundary layer (bbl) to reproduce the observed downward shift in aggregation patterns. We suggest that this behaviour is cued by the small-scale shear in the bbl. Furthermore, this behaviour is likely to enhance aggregations found in strong flows at sills and on continental shelves. [ABSTRACT FROM AUTHOR]

Diel vertical migration (DVM) has been hypothesized to actively transport organic material out of the euphoric layer, thus forming a novel part of the "biological pump." However, quantifying DVM is made difficult by observational limitations. Conventionally, the difference between night and day biomass from net trawls in the surface has been assumed to be a consequence of species that have migrated up from their deep daytime depths. However, some of this difference might be an artifact of visual net avoidance. Here, we present a method that facilitates quantification of zooplankton that are migrating, those that are not migrating, and those able to avoid net capture. The algorithm is applied to an extensive data set gathered in the Azores Front region. Results indicate that DVM, and thus active carbon transport, calculated in the traditional manner would overestimate the true value by ∼50%. [ABSTRACT FROM AUTHOR]

We present inorganic carbon data from the coastal upwelling region west of Vancouver Island, Canada (∼48.5°N, 126°W) directly after an upwelling event and during summer downwelling in July 1998. The inner-shelf buoyancy current, the outer-shelf and the slope regions are contrasted for both wind regimes (up- and downwelling). Results show strong biological drawdown of the partial pressure of carbon dioxide (pCO2) in response to upwelling over the outer-shelf. In contrast, measured pCO2 is exceptionally high (pCO2>1000 ppm) in the inner-shelf current, where biological uptake of carbon is consistently large. The biological C:N uptake ratio appears to increase when nitrogen becomes limiting (during downwelling), while the POC:PON ratio is relatively constant (slightly lower than the Redfield ratio) suggesting that excess carbon uptake does not go into the POC pool. As expected, large cells dominate where measured primary productivity is greatest. Sub-surface inorganic carbon (and pCO2) is high over the shelf. We suggest that carbon concentrations may be higher in coastal waters because of remineralization associated with high productivity that is confined to a smaller volume of water by bathymetry. At the coast these sub-surface concentrations are more efficiently mixed into the surface (especially during winter) relative to deeper offshore regions. Thus, despite high primary production, coastal waters may not aid in sequestration of atmospheric carbon. [Copyright &y& Elsevier]

Anthropogenic climate change is causing our oceans to lose oxygen and become more acidic at an unprecedented rate, threatening marine ecosystems and their associated animals. In deep‐sea environments, where conditions have typically changed over geological timescales, the associated animals, adapted to these stable conditions, are expected to be highly vulnerable to any change or direct human impact. Our study coalesces one of the longest deep‐sea observational oceanographic time series, reaching back to the 1960s, with a modern visual survey that characterizes almost two vertical kilometers of benthic seamount ecosystems. Based on our new and rigorous analysis of the Line P oceanographic monitoring data, the upper 3,000 m of the Northeast Pacific (NEP) has lost 15% of its oxygen in the last 60 years. Over that time, the oxygen minimum zone (OMZ), ranging between approximately 480 and 1,700 m, has expanded at a rate of 3.0 ± 0.7 m/year (due to deepening at the bottom). Additionally, carbonate saturation horizons above the OMZ have been shoaling at a rate of 1–2 m/year since the 1980s. Based on our visual surveys of four NEP seamounts, these deep‐sea features support ecologically important taxa typified by long life spans, slow growth rates, and limited mobility, including habitat‐forming cold water corals and sponges, echinoderms, and fish. By examining the changing conditions within the narrow realized bathymetric niches for a subset of vulnerable populations, we resolve chemical trends that are rapid in comparison to the life span of the taxa and detrimental to their survival. If these trends continue as they have over the last three to six decades, they threaten to diminish regional seamount ecosystem diversity and cause local extinctions. This study highlights the importance of mitigating direct human impacts as species continue to suffer environmental changes beyond our immediate control. [ABSTRACT FROM AUTHOR]

Ocean warming and deoxygenation are already modifying the habitats of many aerobic organisms. Benthic habitat in the Northeast Pacific is sensitive to deoxygenation, as low oxygen concentrations occur naturally in continental shelf bottom waters. Here, we examine the potential impacts of deoxygenation and ocean warming on the habitat distribution of Pacific halibut (Hippoglossus stenolepis), one of the most commercially important groundfish in North America. We combine fisheries‐independent Pacific halibut survey data (1998–2020) with oceanographic measurements and a regional ocean circulation model to investigate current and future (end of 21st century) influences of deoxygenation and warming on optimal Pacific halibut habitat. We use the observations and model output to derive a metabolic index of Pacific halibut‐specific suitable habitat. Our results show high Pacific halibut counts in regions where the metabolic index is greatest and demonstrate that interannual variability in Pacific halibut abundance is coherent with the Pacific Decadal Oscillation. Working with model projections, we examine potential future changes in suitable Pacific halibut habitat by the end of the century under a high carbon dioxide emissions scenario. These projections indicate that suitable Pacific halibut habitat may largely disappear off the coast of Washington state, retreating approximately 5° latitude northward. In bottom waters along coastal British Columbia and Alaska continental shelf, Pacific halibut habitat is projected to decrease by about 50%. Such habitat changes may potentially drive a northward shift in Pacific halibut, with significant implications for commercial fisheries. [ABSTRACT FROM AUTHOR]

Abstract: Oceanographic surveys of surface water hydrography, pCO2, biological O2 saturation (ΔO2/Ar) and dimethylsulfide (DMS) were conducted around Vancouver Island, B.C. during late spring of 2007 and 2010. Winter El Niño conditions during early 2010 resulted in strong downwelling and decreased sub-surface nutrient inventories relative to 2007, while reduced Fraser River input, high wind speeds and greater cloud cover led to relatively weak vertical stratification and decreased sea surface irradiance during the 2010 survey. Phytoplankton biomass (Chla) was significantly higher along the west coast of Vancouver Island (WCVI) during late May 2007, and we observed a strong biological imprint on surface gas distributions during this survey, with biologically induced O2 saturation in excess of 40%. Minimum pCO2 along the WCVI was 100ppm during the 2007 survey, and this region served as a moderate CO2 sink at the time of our sampling (mean sea-air flux of -3.2mmolCO2 m−2 d−1). By comparison, both pCO2 and ΔO2/Ar were much closer to atmospheric equilibrium during our 2010 survey. Despite these lower sea-air gradients, high wind speeds led to a significantly larger CO2 sink (13.4mmolm−2 d−1) during the 2010 survey, and a greater uncoupling of ΔO2/Ar and pCO2 through differential gas exchange. Relative to the WCVI, pCO2 and ΔO2/Ar distributions showed smaller differences among cruises along the east coast of Vancouver Island (ECVI), where surface water properties were largely driven by physical circulation. Nonetheless, we did observe lower pCO2 and higher ΔO2/Ar in the Strait of Georgia during the 2010 survey, possibly due to a wind-driven mixing event which may have stimulated local primary productivity. DMS concentrations exhibited large ranges and significant small-scale spatial variability for both cruises, but mean DMS concentrations were more than three-fold higher along the WCVI during late May 2007. Higher wind speeds in late May 2010 led to greater DMS fluxes during our 2010 survey (10 vs. 5μmolm−2 d−1 for 2010 and 2007, respectively) despite lower sea-air concentration gradients. For both cruises, about 40% of the variability in surface water DMS concentrations was explained by Chla/mixed layer depth ratios when data were binned to a spatial resolution of 0.25°. Based on our results, we discuss the potential linkages between regional climate variability and surface gases in coastal B.C. waters. [Copyright &y& Elsevier]

The downward transport of surface particle production constitutes an important mechanism for carbon sequestration by the ocean. Only a small fraction (≃10%) of the flux that leaves the euphotic zone reaches 1000 m depth because the particulate organic matter is consumed and transformed in the oceanic midwater column. The depth at which this transformation occurs is crucial to estimate carbon sequestration. Description of the particle flux and remineralization with depth below the euphotic zone has previously been limited to empirical relationships that neglect physical and biological mechanisms. Because several particle properties and functions (settling speed, rates of coagulation and consumption) are related to particle size, measurements of particle size spectra provide an important tool to understand particle dynamics. Most of the mechanisms affecting particle dynamics known for the surface layer should continue in the mesopelagic region. We review the different mechanisms and formulate equations describing changes in particle size distributions throughout the water column as a result of particle sinking, coagulation, disaggregation, and bacterial and zooplankton consumption. The resulting model describes the midwater particle population by its mass distribution for the size range 1 μm to 1 cm. Most of the particle data sets have a narrower size range but we suggest that model results are not greatly affected by the lack of data on particles smaller than 200 μm because most of the particle mass is in particles larger than 100 μm, as seen in a full size-range particle spectrum. The combination of this model with a unique particle size spectra data set, obtained during an inter-annual survey at the French JGOFS site in the NW Mediterranean Sea, give an insight into the key processes for particle dynamics in the unknown midwater layers. [Copyright &y& Elsevier]

Abstract: Sea-air carbon dioxide (CO2) fluxes have been analyzed from recently-collected winter, summer and autumn surface ocean CO2 partial pressure (pCO2) data spanning a large portion of the western Canadian coastal ocean, and historical underway pCO2 measurements from the southwest Vancouver Island shelf and the Strait of Juan de Fuca. Sea-air CO2 fluxes from the recent data for specific subregions of the coastal ocean, selected based on geography or bathymetry, were used to make seasonal area-specific estimates of CO2 exchange. These show significant differences between subregions, which have important consequences for estimating seasonal area-weighted fluxes on the margin. Climatologies of sea-air CO2 flux were calculated from the historical data using two approaches: One based on fluxes calculated from temporally-averaged values of sea-air pCO2 differences, solubility and gas transfer velocities, and the other from temporally-averaged instantaneous flux estimates. Seasonal flux estimates from our recently-collected data are consistent with the climatological estimates, in that both show stronger outgassing of CO2 in autumn relative to winter, and both reveal straits as important atmospheric CO2 source regions. Taken together, both analyses of recent and historical data suggest that the transition seasons (spring and autumn) contain the largest (positive and negative) fluxes because of the coincidence of high gas transfer velocities and large surface seawater disequilibria with the atmosphere. By combining the results from these analyses, and making some assumptions where data are missing, we estimate moderate net annual sea-air CO2 influx in the western Canadian coastal ocean of −6mmolm−2 d−1. [Copyright &y& Elsevier]

The absorption of atmospheric carbon dioxide (CO2) into the ocean lowers the pH of the waters. This so-called ocean acidification could have important consequences for marine ecosystems. To better understand the extent of this ocean acidification in coastal waters, we conducted hydrographic surveys along the continental shelf of western North America from central Canada to northern Mexico. We observed seawater that is undersaturated with respect to aragonite üpwelling onto Large portions of the continental shelf, reaching depths of -.40 to 120 meters along most transect tines and all the way to the surface on one transect off northern California. Although seasonal upwetting of the undersaturated waters onto the shelf is a natural phenomenon in this region, the ocean uptake of anthropogenic CO2 has increased the areal extent of the affected area. [ABSTRACT FROM AUTHOR]