Objective: To assess motor unit (MU) changes in patients with spinal muscular atrophy (SMA) using compound muscle action potential (CMAP) scans., Methods: We performed CMAP scan recordings in median nerves of 24 treatment-naïve patients (median age 39; range 12-75 years) with SMA types 2-4. From each scan, we determined maximum CMAP amplitude (CMAP max ), a motor unit number estimate (MUNE), and D50 which quantifies the largest discontinuities within CMAP scans., Results: Median CMAP max was 8.1 mV (range 0.9-14.6 mV), MUNE was 29 (range 6-131), and D50 was 25 (range 2-57). We found a reduced D50 (<25) in patients with normal CMAP max (n = 12), indicating MU loss and enlarged MUs due to reinnervation. Lower D50 values were associated with decreased MUNE (P < 0.001, r = 0.68, n = 43). CMAP max , MUNE and D50 values differed between SMA types (P < 0.001). Lower motor function scores were related to patients with lower CMAP max , MUNE and D50 values (P < 0.001)., Conclusions: The CMAP scan is an easily applicable technique that is superior to routine assessment of CMAP max in SMA., Significance: The detection of pathological MU changes across the spectrum of SMA may provide important biomarkers for evaluating disease course and monitoring treatment efficacy., Competing Interests: Declaration of Competing Interest B. Sleutjes, C. Wijngaarde, R. Wadman, L. Otto, F. Asselman, I. Cuppen, W.L. van der Pol, and H.S. Goedee have no potential conflicts of interest to be disclosed. L. van den Berg reports grants from ALS Foundation Netherlands, grants from The. Netherlands Organization for Health Research and Development (Vici scheme), grants. from The Netherlands Organization for Health Research and Development (SOPHIA, STRENGTH, ALS-CarE project), funded through the EU Joint Programme – Neurodegenerative Disease Research, JPND), and personal fees from Shire, Biogen, Cytokinetics, and Treeway., (Copyright © 2020 International Federation of Clinical Neurophysiology. Published by Elsevier B.V. All rights reserved.)