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1. sPlot – A new tool for global vegetation analyses

Author

Bruelheide, H., Dengler, J., Jiménez Alfaro, Borja, Purschke, Oliver, Hennekens, S.M., Chytrý, M., Pillar, V.D., Jansen, F., Kattge, Jens, Sandel, B., Aubin, I., Beckmann, M., Berg, Christian, Fagúndez, J., Levesley, A., Bergeron, Y., Bergmeier, E., De Bie, E., Nobis, M., Kuzemko, A., Kącki, Z., Marcenò, Corrado, Byun, C., Işık Gürsoy, D., Li, C.-F., Cabido, M.R., Hatim, M.Z., Moeslund, J.E., Casella, L., Cayuela, Luis, Finckh, Manfred, Petřík, P., Martynenko, V., Kozhevnikova, M., Liu, H., Kavgacı, A., Moretti, M., de Ruffray, P., Jansen, S., Pauchard, A., De Sanctis, M., Dimopoulos, P., He, T., Schmiedel, U., Küzmič, F., Müller, J.V., Kozub, Ł., Pedashenko, H., Lopez-Gonzalez, G., Kearsley, E., Rodwell, J., Font, X., Forey, E., Janssen, J., Biurrun, Idoia, Peñuelas, Josep, Landucci, F., Ruprecht, E., Munzinger, J., Krstonošić, D., Smyth, A., Higuchi, P., Lysenko, T., Kessler, M., Rūsiņa, S., Mencuccini, Maurizio, Sop, T., Pérez-Haase, A., Lee, M.T., Tsiripidis, I., Jedrzejek, B., Niinemets, Ü., Mahdavi, P., Sopotlieva, D., Turtureanu, P. D., Samimi, C., Minden, V., Vélez-Martin, E., Knollová, I., Peterka, T., Noroozi, J., Uğurlu, E., Venanzoni, R., Sparrow, B., Walker, D.A., Kühl, H., Schaminée, J.H.J., Phillips, Olivier L., Peet, R.K., Wana, D., Uogintas, D., Wiser, S., Manning, Peter, Stančić, Z., Arnst, E., Wohlgemuth, T., Vibrans, A.C., Schmidt, M., Nowak, A., Valachovič, M., Field, R., Onyshchenko, V., Svenning, J.-C., Álvarez, M., Overbeck, G.E., Ozinga, Win A., Šibík, J., Breen, A., Schrodt, F., Weiher, E., Haider, S., Violle, Cyrille, Ambarlı, D., Prokhorov, V., Vanselow, K. A., Bjorkman, Anne D., Rašomavičius, V., Revermann, R., Swacha, G., Dajić-Stevanović, Zora, Yamalov, S., Angelini, Pierangela, Wesche, K., Bondareva, V., Jandt, U., Virtanen, R., Černý, T., Šilc, U., Škvorc, Ž., Vashenyak, Y., Winter, M., Borchardt, P., Zizka, G., Chepinoga, V., Apostolova, I., Whitfeld, T., Dressler, S., Tang, Z., Lenoir, J., von Wehrden, H., Csiky, J., Aćić, Svetlana, Ejrnæs, R., Botta-Dukát, Z., Zverev, A., Fotiadis, Georgios, Vassilev, K., Arfin Khan, Mohammed A. S., Peyre, G., El-Sheikh, M.A.E.-R.M., García-Mijangos, I., Curran, Michael, Agrillo, E., Holubová, D., Wagner, V., Boyle, B., Attorre, Fabio, de Gasper, A.L., Hölzel, N., Enquist, B., Jiroušek, M., Willner, W., Custerevska, Renata, Brisse, H., Homeier, J., Jürgens, N., Golub, V., Kolomiychuk, V., Sabatini, Francesco Maria, Ewald, J., Macanović, A., Korolyuk, A., Indreica, A., Kühn, Ingolf, Baraloto, C., Gutierrez, A.G., Bruelheide, H., Dengler, J., Jiménez Alfaro, Borja, Purschke, Oliver, Hennekens, S.M., Chytrý, M., Pillar, V.D., Jansen, F., Kattge, Jens, Sandel, B., Aubin, I., Beckmann, M., Berg, Christian, Fagúndez, J., Levesley, A., Bergeron, Y., Bergmeier, E., De Bie, E., Nobis, M., Kuzemko, A., Kącki, Z., Marcenò, Corrado, Byun, C., Işık Gürsoy, D., Li, C.-F., Cabido, M.R., Hatim, M.Z., Moeslund, J.E., Casella, L., Cayuela, Luis, Finckh, Manfred, Petřík, P., Martynenko, V., Kozhevnikova, M., Liu, H., Kavgacı, A., Moretti, M., de Ruffray, P., Jansen, S., Pauchard, A., De Sanctis, M., Dimopoulos, P., He, T., Schmiedel, U., Küzmič, F., Müller, J.V., Kozub, Ł., Pedashenko, H., Lopez-Gonzalez, G., Kearsley, E., Rodwell, J., Font, X., Forey, E., Janssen, J., Biurrun, Idoia, Peñuelas, Josep, Landucci, F., Ruprecht, E., Munzinger, J., Krstonošić, D., Smyth, A., Higuchi, P., Lysenko, T., Kessler, M., Rūsiņa, S., Mencuccini, Maurizio, Sop, T., Pérez-Haase, A., Lee, M.T., Tsiripidis, I., Jedrzejek, B., Niinemets, Ü., Mahdavi, P., Sopotlieva, D., Turtureanu, P. D., Samimi, C., Minden, V., Vélez-Martin, E., Knollová, I., Peterka, T., Noroozi, J., Uğurlu, E., Venanzoni, R., Sparrow, B., Walker, D.A., Kühl, H., Schaminée, J.H.J., Phillips, Olivier L., Peet, R.K., Wana, D., Uogintas, D., Wiser, S., Manning, Peter, Stančić, Z., Arnst, E., Wohlgemuth, T., Vibrans, A.C., Schmidt, M., Nowak, A., Valachovič, M., Field, R., Onyshchenko, V., Svenning, J.-C., Álvarez, M., Overbeck, G.E., Ozinga, Win A., Šibík, J., Breen, A., Schrodt, F., Weiher, E., Haider, S., Violle, Cyrille, Ambarlı, D., Prokhorov, V., Vanselow, K. A., Bjorkman, Anne D., Rašomavičius, V., Revermann, R., Swacha, G., Dajić-Stevanović, Zora, Yamalov, S., Angelini, Pierangela, Wesche, K., Bondareva, V., Jandt, U., Virtanen, R., Černý, T., Šilc, U., Škvorc, Ž., Vashenyak, Y., Winter, M., Borchardt, P., Zizka, G., Chepinoga, V., Apostolova, I., Whitfeld, T., Dressler, S., Tang, Z., Lenoir, J., von Wehrden, H., Csiky, J., Aćić, Svetlana, Ejrnæs, R., Botta-Dukát, Z., Zverev, A., Fotiadis, Georgios, Vassilev, K., Arfin Khan, Mohammed A. S., Peyre, G., El-Sheikh, M.A.E.-R.M., García-Mijangos, I., Curran, Michael, Agrillo, E., Holubová, D., Wagner, V., Boyle, B., Attorre, Fabio, de Gasper, A.L., Hölzel, N., Enquist, B., Jiroušek, M., Willner, W., Custerevska, Renata, Brisse, H., Homeier, J., Jürgens, N., Golub, V., Kolomiychuk, V., Sabatini, Francesco Maria, Ewald, J., Macanović, A., Korolyuk, A., Indreica, A., Kühn, Ingolf, Baraloto, C., and Gutierrez, A.G.

Abstract

Aims: Vegetation-plot records provide information on the presence and cover or abundance of plants co-occurring in the same community. Vegetation-plot data are spread across research groups, environmental agencies and biodiversity research centers and, thus, are rarely accessible at continental or global scales. Here we present the sPlot database, which collates vegetation plots worldwide to allow for the exploration of global patterns in taxonomic, functional and phylogenetic diversity at the plant community level. Results: sPlot version 2.1 contains records from 1,121,244 vegetation plots, which comprise 23,586,216 records of plant species and their relative cover or abundance in plots collected worldwide between 1885 and 2015. We complemented the information for each plot by retrieving climate and soil conditions and the biogeographic context (e.g., biomes) from external sources, and by calculating community-weighted means and variances of traits using gap-filled data from the global plant trait database TRY. Moreover, we created a phylogenetic tree for 50,167 out of the 54,519 species identified in the plots. We present the first maps of global patterns of community richness and community-weighted means of key traits. Conclusions: The availability of vegetation plot data in sPlot offers new avenues for vegetation analysis at the global scale.

Published
2019

2. sPlot – A new tool for global vegetation analyses

Author

Bruelheide H., Dengler J., Jiménez-Alfaro B., Purschke O., Hennekens S., Chytrý M., Pillar V., Jansen F., Kattge J., Sandel B., Aubin I., Biurrun I., Field R., Haider S., Jandt U., Lenoir J., Peet R., Peyre G., Sabatini F., Schmidt M., Schrodt F., Winter M., Aćić S., Agrillo E., Alvarez M., Ambarlı D., Angelini P., Apostolova I., Arfin Khan M., Arnst E., Attorre F., Baraloto C., Beckmann M., Berg C., Bergeron Y., Bergmeier E., Bjorkman A., Bondareva V., Borchardt P., Botta-Dukát Z., Boyle B., Breen A., Brisse H., Byun C., Cabido M., Casella L., Cayuela L., Černý T., Chepinoga V., Csiky J., Curran M., Ćušterevska R., Dajić Stevanović Z., De Bie E., de Ruffray P., De Sanctis M., Dimopoulos P., Dressler S., Ejrnæs R., El-Sheikh M., Enquist B., Ewald J., Fagúndez J., Finckh M., Font X., Forey E., Fotiadis G., García-Mijangos I., de Gasper A., Golub V., Gutierrez A., Hatim M., He T., Higuchi P., Holubová D., Hölzel N., Homeier J., Indreica A., Işık Gürsoy D., Jansen S., Janssen J., Jedrzejek B., Jiroušek M., Jürgens N., Kącki Z., Kavgacı A., Kearsley E., Kessler M., Knollová I., Kolomiychuk V., Korolyuk A., Kozhevnikova M., Kozub Ł., Krstonošić D., Kühl H., Kühn I., Kuzemko A., Küzmič F., Landucci F., Lee M., Bruelheide H., Dengler J., Jiménez-Alfaro B., Purschke O., Hennekens S., Chytrý M., Pillar V., Jansen F., Kattge J., Sandel B., Aubin I., Biurrun I., Field R., Haider S., Jandt U., Lenoir J., Peet R., Peyre G., Sabatini F., Schmidt M., Schrodt F., Winter M., Aćić S., Agrillo E., Alvarez M., Ambarlı D., Angelini P., Apostolova I., Arfin Khan M., Arnst E., Attorre F., Baraloto C., Beckmann M., Berg C., Bergeron Y., Bergmeier E., Bjorkman A., Bondareva V., Borchardt P., Botta-Dukát Z., Boyle B., Breen A., Brisse H., Byun C., Cabido M., Casella L., Cayuela L., Černý T., Chepinoga V., Csiky J., Curran M., Ćušterevska R., Dajić Stevanović Z., De Bie E., de Ruffray P., De Sanctis M., Dimopoulos P., Dressler S., Ejrnæs R., El-Sheikh M., Enquist B., Ewald J., Fagúndez J., Finckh M., Font X., Forey E., Fotiadis G., García-Mijangos I., de Gasper A., Golub V., Gutierrez A., Hatim M., He T., Higuchi P., Holubová D., Hölzel N., Homeier J., Indreica A., Işık Gürsoy D., Jansen S., Janssen J., Jedrzejek B., Jiroušek M., Jürgens N., Kącki Z., Kavgacı A., Kearsley E., Kessler M., Knollová I., Kolomiychuk V., Korolyuk A., Kozhevnikova M., Kozub Ł., Krstonošić D., Kühl H., Kühn I., Kuzemko A., Küzmič F., Landucci F., and Lee M.

Abstract

© 2019 International Association for Vegetation Science Aims: Vegetation-plot records provide information on the presence and cover or abundance of plants co-occurring in the same community. Vegetation-plot data are spread across research groups, environmental agencies and biodiversity research centers and, thus, are rarely accessible at continental or global scales. Here we present the sPlot database, which collates vegetation plots worldwide to allow for the exploration of global patterns in taxonomic, functional and phylogenetic diversity at the plant community level. Results: sPlot version 2.1 contains records from 1,121,244 vegetation plots, which comprise 23,586,216 records of plant species and their relative cover or abundance in plots collected worldwide between 1885 and 2015. We complemented the information for each plot by retrieving climate and soil conditions and the biogeographic context (e.g., biomes) from external sources, and by calculating community-weighted means and variances of traits using gap-filled data from the global plant trait database TRY. Moreover, we created a phylogenetic tree for 50,167 out of the 54,519 species identified in the plots. We present the first maps of global patterns of community richness and community-weighted means of key traits. Conclusions: The availability of vegetation plot data in sPlot offers new avenues for vegetation analysis at the global scale.

3. European Vegetation Archive (EVA): an integrated database of European vegetation plots

Author

Ioannis Tsiripidis, Dmytro Dubyna, Emin Uğurlu, Federico Fernández-González, Svetlana Aćić, Valerijus Rašomavičius, Anna Kuzemko, Jiří Danihelka, Wolfgang Willner, Christian Berg, Mirjana Ćuk, Pavel Dan Turtureanu, Erwin Bergmeier, Aaron Pérez-Haase, Vadim Prokhorov, Deniz Işık Gürsoy, Zoltán Botta-Dukát, Hristo Pedashenko, John Janssen, Martin Kleikamp, Thomas Wohlgemuth, Martin Jiroušek, S. M. Yamalov, Viktor Onyshchenko, Ilona Knollová, Urban Šilc, Jörg Ewald, Henry Brisse, Xavier Font, Didem Ambarlı, John S. Rodwell, Andraž Čarni, Tatiana Rogova, Lynda Weekes, Solvita Rūsiņa, Gunnar Seidler, Tetiana Dziuba, Milan Chytrý, Desislava Sopotlieva, Risto Virtanen, Nikolai Ermakov, Riccardo Guarino, Maria Pilar Rodríguez-Rojo, Florian Jansen, Michele De Sanctis, Zygmunt Kącki, Domas Uogintas, Itziar García-Mijangos, Ute Jandt, Jürgen Dengler, Úna FitzPatrick, Jens-Christian Svenning, Eszter Ruprecht, Idoia Biurrun, Kiril Vassilev, Borja Jiménez-Alfaro, Stephan M. Hennekens, Tomáš Peterka, Laura Casella, Zvjezdana Stančić, Jonathan Lenoir, Iva Apostolova, Flavia Landucci, Milan Valachovič, Fabio Attorre, Joop H.J. Schaminée, Renata Ćušterevska, Corrado Marcenò, Valentin Golub, Grzegorz Swacha, János Csiky, Patrice de Ruffray, Tatiana Lysenko, Vitaliy Kolomiychuk, Rense Haveman, Luis Carlón, Emiliano Agrillo, Ali Kavgaci, W. Bernhard Dickoré, Els De Bie, Željko Škvorc, Vassiliy Martynenko, Dana Michalcová, Roberto Venanzoni, Rosario G. Gavilán, Jesper Erenskjold Moeslund, Pierangela Angelini, Giuliano Fanelli, Jozef Šibík, Juan Antonio Campos, Yulia Vashenyak, Rasmus Ejrnæs, Adrian Indreica, Panayotis Dimopoulos, Daniel Krstonošić, Zora Dajić Stevanović, Chytrý, M., Hennekens, S., Jiménez-Alfaro, B., Knollová, I., Dengler, J., Jansen, F., Landucci, F., Schaminée, J., Aćić, S., Agrillo, E., Ambarlı, D., Angelini, P., Apostolova, I., Attorre, F., Berg, C., Bergmeier, E., Biurrun, I., Botta-Dukát, Z., Brisse, H., Campos, J., Carlón, L., Čarni, A., Casella, L., Csiky, J., Ćušterevska, R., Dajić Stevanović, Z., Danihelka, J., De Bie, E., de Ruffray, P., De Sanctis, M., Dickoré, W., Dimopoulos, P., Dubyna, D., Dziuba, T., Ejrnaes, R., Ermakov, N., Ewald, J., Fanelli, G., Fernández-González, F., Fitzpatrick, Ú., Font, X., García-Mijangos, I., Gavilán, R., Golub, V., Guarino, R., Haveman, R., Indreica, A., Işık Gürsoy, D., Jandt, U., Janssen, J., Jiroušek, M., Kącki, Z., Kavgacı, A., Kleikamp, M., Kolomiychuk, V., Krstivojević Ćuk, M., Krstonošić, D., Kuzemko, A., Lenoir, J., Lysenko, T., Marcenò, C., Martynenko, V., Michalcová, D., Moeslund, J., Onyshchenko, V., Pedashenko, H., Pérez-Haase, A., Peterka, T., Prokhorov, V., Rašomavičius, V., Rodríguez-Rojo, M., Rodwell, J., Rogova, T., Ruprecht, E., Rūsiņa, S., Seidler, G., Šibík, J., Šilc, U., Škvorc, Ž., Sopotlieva, D., Stančić, Z., Svenning, J., Swacha, G., Tsiripidis, I., Turtureanu, P., Uğurlu, E., Uogintas, D., Valachovič, M., Vashenyak, Y., Vassilev, K., Venanzoni, R., Virtanen, R., Weekes, L., Willner, W., Wohlgemuth, T., Yamalov, S., and Universitat de Barcelona

Subjects
0106 biological sciences, International Association for Vegetation Science, Bos- en Landschapsecologie, Ecoinformatic, 01 natural sciences, Ecoinformatics, Forest and Landscape Ecology, Vegetació, Ecology, Environmental resource management, PE&RC, Vegetation plot, Europe, Centralized database, Geography, Cartografia de la vegetació, Plantenecologie en Natuurbeheer, Vegetatie, Bos- en Landschapsecologie, medicine.symptom, Geographic coordinate system, Europa, Releve, Plant Ecology and Nature Conservation, European Vegetation Survey, Management, Monitoring, Policy and Law, Biodiversity informatics, 010603 evolutionary biology, Plot (graphics), Relevé, Database, Phytosociological data, Vegetation database, medicine, biodiversity informatics, database, ecoinformatics, european vegetation survey, international association for vegetation science, phytosociological data, relevé, vegetation database, vegetation plot, ecology, nature and landscape conservation, management, monitoring, policy and law, Vegetatie, Nature and Landscape Conservation, Vegetation mapping, Vegetation, business.industry, 15. Life on land, Defensie, Taxon, Biodiversity informatic, Integrated database, Vegetation, Forest and Landscape Ecology, business, Vegetation (pathology), 010606 plant biology & botany
Abstract

Biurrun, Idoia/0000-0002-1454-0433; Rojo, Maria Pilar Rodriguez/0000-0001-5449-9386; Ermakov, Nikolai/0000-0001-7550-990X; De Sanctis, Michele/0000-0002-7280-6199; Svenning, Jens-Christian/0000-0002-3415-0862; Virtanen, Risto/0000-0002-8295-8217; Agrillo, Emiliano/0000-0003-2346-8346; Onyshchenko, Viktor/0000-0001-9079-7241; Marceno, Corrado/0000-0003-4361-5200; Willner, Wolfgang/0000-0003-1591-8386; Fernandez-Gonzalez, Federico/0000-0003-1234-4065; Jansen, Florian/0000-0002-0331-5185; Swacha, Grzegorz/0000-0002-6380-2954; Dengler, Jurgen/0000-0003-3221-660X; Guarino, Riccardo/0000-0003-0106-9416; Sopotlieva, Desislava/0000-0002-9281-7039; Venanzoni, Roberto/0000-0002-7768-0468; Chytry, Milan/0000-0002-8122-3075; Kuzemko, Anna/0000-0002-9425-2756; Danihelka, Jiri/0000-0002-2640-7867; Kuzemko, Anna/0000-0002-9425-2756; Venanzoni, Roberto/0000-0002-7768-0468; Gavilan, Rosario G./0000-0002-1022-445X; Jansen, Florian/0000-0002-0331-5185; Wohlgemuth, Thomas/0000-0002-4623-0894; Svenning, Jens-Christian/0000-0002-3415-0862; Sibik, Jozef/0000-0002-5949-862X; Casella, Laura/0000-0003-2550-3010; Lenoir, Jonathan/0000-0003-0638-9582; Attorre, Fabio/0000-0002-7744-2195; Kacki, Zygmunt/0000-0002-2241-1631; Jandt, Ute/0000-0002-3177-3669; Carni, Andraz/0000-0002-8909-4298; Jirousek, Martin/0000-0002-4293-478X; GARCIA-MIJANGOS, ITZIAR/0000-0002-6642-7782; Campos, Juan Antonio/0000-0001-5992-2753; Fanelli, Giuliano/0000-0002-3143-1212; Haveman, Rense/0000-0001-9127-4549; Acic, Svetlana/0000-0001-6553-3797; De Bie, Els/0000-0001-7679-743X; Font, Xavier/0000-0002-7253-8905; Moeslund, Jesper Erenskjold/0000-0001-8591-7149; Martynenko, Vasiliy/0000-0002-9071-3789; Jimenez-Alfaro, Borja/0000-0001-6601-9597; Ejrnaes, Rasmus/0000-0003-2538-8606; Carlon Ruiz, Luis/0000-0003-3442-8710; Angelini, Pierangela/0000-0002-5321-9757; Silc, Urban/0000-0002-3052-699X; Landucci, Flavia/0000-0002-6848-0384; Ewald, Jorg/0000-0002-2758-9324; Dziuba, Tetiana/0000-0001-8621-0890 WOS: 000368074600018 The European Vegetation Archive (EVA) is a centralized database of European vegetation plots developed by the IAVS Working Group European Vegetation Survey. It has been in development since 2012 and first made available for use in research projects in 2014. It stores copies of national and regional vegetation-plot databases on a single software platform. Data storage in EVA does not affect on-going independent development of the contributing databases, which remain the property of the data contributors. EVA uses a prototype of the database management software TURBOVEG 3 developed for joint management of multiple databases that use different species lists. This is facilitated by the SynBioSys Taxon Database, a system of taxon names and concepts used in the individual European databases and their corresponding names on a unified list of European flora. TURBOVEG 3 also includes procedures for handling data requests, selections and provisions according to the approved EVA Data Property and Governance Rules. By 30 June 2015, 61 databases from all European regions have joined EVA, contributing in total 1 027 376 vegetation plots, 82% of them with geographic coordinates, from 57 countries. EVA provides a unique data source for large-scale analyses of European vegetation diversity both for fundamental research and nature conservation applications. Updated information on EVA is available online at http://euroveg.org/eva-database. Czech Science Foundation (Centre of Excellence PLADIAS) [14-36079G] Our major thanks go to thousands of European vegetation scientists of several generations who collected the original vegetation-plot data in the field, published them or made their unpublished data available to others, and to those who spent myriad hours digitizing data and managing the contributing databases. EVA data management has been partly funded by the Czech Science Foundation (Centre of Excellence PLADIAS, 14-36079G).

Published
2016
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