44 results on '"Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact"'
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2. Prevalence, Cell Tropism, and Clinical Impact of Human Parvovirus Persistence in Adenomatous, Cancerous, Inflamed, and Healthy Intestinal Mucosa
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Man Xu, Katarzyna Leskinen, Tommaso Gritti, Valerija Groma, Johanna Arola, Anna Lepistö, Taina Sipponen, Päivi Saavalainen, Maria Söderlund-Venermo, University of Helsinki, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, TRIMM - Translational Immunology Research Program, Research Programs Unit, HUSLAB, Department of Pathology, HUS Abdominal Center, Clinicum, Gastroenterologian yksikkö, and Immunomics
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Microbiology (medical) ,11832 Microbiology and virology ,LINE U937 ,parvovirus B19 ,PROTEIN ,DNA ,QUANTITATIVE PCR ,Microbiology ,RNAscope in situ hybridization ,ENDOTHELIAL-CELLS ,human bocavirus 1 ,DISEASE ,tissue persistence ,APOPTOSIS ,GENOME ,immunohistochemistry ,VIRUS ,3111 Biomedicine ,RNA-seq ,B19 INFECTION - Abstract
Parvoviruses are single-stranded DNA viruses, infecting many animals from insects to humans. Human parvovirus B19 (B19V) causes erythema infectiosum, arthropathy, anemia, and fetal death, and human bocavirus (HBoV) 1 causes respiratory tract infections, while HBoV2-4 are enteric. Parvoviral genomes can persist in diverse non-permissive tissues after acute infection, but the host-cell tropism and the impact of their tissue persistence are poorly studied. We searched for parvoviral DNA in a total of 427 intestinal biopsy specimens, as paired disease-affected and healthy mucosa, obtained from 130 patients with malignancy, ulcerative colitis (UC), or adenomas, and in similar intestinal segments from 55 healthy subjects. Only three (1.6%) individuals exhibited intestinal HBoV DNA (one each of HBoV1, 2, and 3). Conversely, B19V DNA persisted frequently in the intestine, with 50, 47, 31, and 27% detection rates in the patients with malignancy, UC, or adenomas, and in the healthy subjects, respectively. Intra-individually, B19V DNA persisted significantly more often in the healthy intestinal segments than in the inflamed colons of UC patients. The highest loads of B19V DNA were seen in the ileum and colon specimens of two healthy individuals. With dual-RNAscope in situ hybridization and immunohistochemistry assays, we located the B19V persistence sites of these intestines in mucosal B cells of lymphoid follicles and vascular endothelial cells. Viral messenger RNA transcription remained, however, undetected. RNA sequencing (RNA-seq) identified 272 differentially expressed cellular genes between B19V DNA-positive and -negative healthy ileum biopsy specimens. Pathway enrichment analysis revealed that B19V persistence activated the intestinal cell viability and inhibited apoptosis. Lifelong B19V DNA persistence thus modulates host gene expression, which may lead to clinical outcomes.
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- 2022
3. Torque Teno Virus Primary Infection Kinetics in Early Childhood
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Elina Väisänen, Inka Kuisma, Marjaana Mäkinen, Jorma Ilonen, Riitta Veijola, Jorma Toppari, Klaus Hedman, Maria Söderlund-Venermo, Department of Virology, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, University of Helsinki, Medicum, HUSLAB, Virus infections and immunity, Klaus Hedman / Principal Investigator, and Biosciences
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TRANSMISSION ,CHILDREN ,Anelloviridae ,DISEASE ,Virology ,Humans ,anellovirus ,TTV primary infection ,infants ,genoprevalence ,viremia ,Child ,TT VIRUS ,11832 Microbiology and virology ,Torque teno virus ,Viral Load ,DNA Virus Infections ,Kinetics ,Infectious Diseases ,Child, Preschool ,DNA, Viral ,HUMAN VIROME ,COINFECTION ,3111 Biomedicine - Abstract
Human torque teno viruses (TTVs) are a diverse group of small nonenveloped viruses with circular, single-stranded DNA genomes. These elusive anelloviruses are harbored in the blood stream of most humans and have thus been considered part of the normal flora. Whether the primary infection as a rule take(s) place before or after birth has been debated. The aim of our study was to determine the time of TTV primary infection and the viral load and strain variations during infancy and follow-up for up to 7 years. TTV DNAs were quantified in serial serum samples from 102 children by a pan-TTV quantitative PCR, and the amplicons from representative time points were cloned and sequenced to disclose the TTV strain diversity. We detected an unequivocal rise in TTV-DNA prevalence, from 39% at 4 months of age to 93% at 2 years; all children but one, 99%, became TTV-DNA positive before age 4 years. The TTV-DNA quantities ranged from 5 x 10(1) to 4 x 10(7) copies/mL, both within and between the children. In conclusion, TTV primary infections occur mainly after birth, and increase during the first two years with high intra- and interindividual variation in both DNA quantities and virus strains.
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- 2022
4. The long-term prognostic value of serum 25(OH)D, albumin, and LL-37 levels in acute respiratory diseases among older adults
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Matti Aronen, Laura Viikari, Henriikka Langen, Ia Kohonen, Maarit Wuorela, Tytti Vuorinen, Maria Söderlund-Venermo, Matti Viitanen, Carlos Arturo Camargo, Tero Vahlberg, Tuomas Jartti, Biosciences, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Department of Virology
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Etiology ,Serum Albumin, Human ,Respiratory virus ,Cathelicidins ,Humans ,Vitamin D ,VITAMIN-D ,FRAILTY ,Respiratory Tract Infections ,Aged ,11832 Microbiology and virology ,Aged, 80 and over ,25(OH)D ,Albumin ,INFLUENZA-A ,Age Factors ,LL-37 ,Length of Stay ,ANTIMICROBIAL PEPTIDES ,Prognosis ,Vitamin D Deficiency ,Peptide Fragments ,C-Reactive Protein ,INFECTIONS ,3121 General medicine, internal medicine and other clinical medicine ,Older adults ,CATHELICIDIN LL-37 ,VIRUS ,HEALTH ,3111 Biomedicine ,Geriatrics and Gerontology ,LUNG - Abstract
Background Older adults are more susceptible to respiratory tract infection than healthy working age adults. The increased susceptibility of older adults is thought to be interlinked with vitamin D status, nourishment, and immunological state in general. Data are scarce whether these parameters could serve as prognostic markers. Aim To study whether serum 25(OH)D, albumin, and LL-37 level could give prognostic value of long-term survival in the older adults with multimorbidity and acute respiratory infection. Methods Consecutive episodes of hospital care of patients 65 years and older with respiratory symptoms were prospectively studied as a cohort. Standard clinical questionnaire was filled by the study physician. Laboratory markers included serum levels of 25(OH)D, albumin and LL-37, C-reactive protein (CRP), white blood cell count (WBC) and polymerase chain reaction diagnostics for 14 respiratory viruses. Pneumonia was confirmed by chest radiographs. Respiratory illness severity, death at ward, length of hospital stays, and 5-year survival were used as outcomes. Results In total, 289 older adult patients with mean age of 83 years were included in the study. Serum 25(OH)D deficiency (P P Conclusions Serum albumin level on admission seems to give valuable information about the patients’ general health and recovery potential in treating older adults with respiratory symptoms. Serum 25(OH)D and LL-37 had no associations with disease severity or long- and short-term prognosis among older adults hospitalized with respiratory symptoms.
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- 2022
5. World Society for Virology first international conference: Tackling global virus epidemics
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Maria Söderlund-Venermo, Anupam Varma, Deyin Guo, Douglas P. Gladue, Emma Poole, Flor H. Pujol, Hanu Pappu, Jesús L. Romalde, Laura Kramer, Mariana Baz, Marietjie Venter, Matthew D. Moore, Michael M. Nevels, Sayeh Ezzikouri, Vikram N. Vakharia, William C. Wilson, Yashpal S. Malik, Zhengli Shi, Ahmed S. Abdel-Moneim, Poole, Emma [0000-0003-3904-6121], Apollo - University of Cambridge Repository, Department of Virology, Biosciences, and Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact
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11832 Microbiology and virology ,Societies, Scientific ,SARS-CoV-2 ,Meeting report ,COVID-19 ,Congresses as Topic ,Article ,humanities ,Conference report ,World Society for Virology ,WSV ,Virology ,Humans ,Tackling global viral epidemics - Abstract
Funder: Department of Health, Australian Government, This communication summarizes the presentations given at the 1st international conference of the World Society for Virology (WSV) held virtually during 16-18 June 2021, under the theme of tackling global viral epidemics. The purpose of this biennial meeting is to foster international collaborations and address important viral epidemics in different hosts. The first day included two sessions exclusively on SARS-CoV-2 and COVID-19. The other two days included one plenary and three parallel sessions each. Last not least, 16 sessions covered 140 on-demand submitted talks. In total, 270 scientists from 49 countries attended the meeting, including 40 invited keynote speakers.
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- 2022
6. The presence of herpesviruses in malignant but not in benign or recurrent pleomorphic adenomas
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Anttoni Markkanen, Maria K Jauhiainen, Jaana Hagström, Katri Aro, Maria Söderlund-Venermo, Lari Pyöriä, Saku T. Sinkkonen, Caj Haglund, Timo Atula, Man Xu, Antti Mäkitie, HUS Head and Neck Center, Korva-, nenä- ja kurkkutautien klinikka, Department of Virology, Research Program in Systems Oncology, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Virus infections and immunity, Clinicum, Department of Pathology, HUSLAB, HUS Abdominal Center, II kirurgian klinikka, Department of Surgery, CAN-PRO - Translational Cancer Medicine Program, and Medicum
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Male ,Pathology ,medicine.medical_specialty ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,viruses ,education ,Adenoma, Pleomorphic ,Virus ,Salivary Glands ,Pleomorphic adenoma ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,3125 Otorhinolaryngology, ophthalmology ,Microbiome ,Herpesviridae ,030304 developmental biology ,0303 health sciences ,biology ,Salivary gland ,Parvovirus ,virus diseases ,General Medicine ,Herpesviridae Infections ,Middle Aged ,biology.organism_classification ,medicine.disease ,Salivary Gland Neoplasms ,3. Good health ,medicine.anatomical_structure ,Carcinoma ex pleomorphic adenoma ,030220 oncology & carcinogenesis ,DNA, Viral ,Etiology ,Female ,Merkel cell - Abstract
BACKGROUND: The etiology of salivary gland tumors is mainly unknown. The anatomical location of the salivary glands, with the mucosal pathway to the oral cavity and its rich microbiome, raises the question of potential viral background. OBJECTIVE: This study focuses on the potential presence of herpes-, polyoma- and parvoviruses in pleomorphic adenoma (PA), recurrent pleomorphic adenoma (RPA) and carcinoma ex pleomorphic adenoma (CaxPA). METHODS: Thirty different viruses were analyzed by PCR-based assays in 68 formalin-fixed paraffin-embedded salivary gland tumors (25 PA, 31 RPA and 12 CaxPA). RESULTS: Virus DNA was detected altogether in 19/68 (28%) tumor samples. Human herpesviruses 6B and 7 (HHV-6B and HHV-7) and Epstein-Barr virus (EBV) were frequently and almost exclusively found in CaxPA (5/12, 7/12, and 3/12, respectively). Within the 7 CaxPA that were virus-positive, 3 samples contained 3, and 1 sample even 4, different viruses. Infrequent viral positivity was shown for parvovirus B19 and cutavirus, as well as Merkel cell and Malawi polyomaviruses. CONCLUSIONS: Our unexpected finding of herpesvirus DNA almost exclusively in CaxPA tissues deserves further in-depth studies.
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- 2021
7. Human bocavirus 1 respiratory tract re-activations or re-infections in two adults, contributing to neurologic deficits and death
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D. Wolff, Maria Söderlund-Venermo, Klemens Angstwurm, Annelie Plentz, Matthias Edinger, Rajita Rayamajhi Thapa, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, and Biosciences
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0301 basic medicine ,reactivation ,respiratory tract infection ,030106 microbiology ,education ,Case Reports ,original antigenic sin ,3124 Neurology and psychiatry ,Serology ,reinfection ,03 medical and health sciences ,0302 clinical medicine ,Immunity ,Medicine ,General Materials Science ,030212 general & internal medicine ,Respiratory system ,Seroconversion ,Young adult ,fatal ,Respiratory tract infections ,biology ,business.industry ,Human bocavirus ,parvovirus ,biology.organism_classification ,3. Good health ,medicine.anatomical_structure ,3121 General medicine, internal medicine and other clinical medicine ,Immunology ,business ,Respiratory tract - Abstract
Human bocavirus 1 (HBoV1) of the family Parvoviridae causes mild to life-threatening respiratory tract infections in young children, but, due to widespread immunity, it is uncommon in adults. HBoV1 reinfections or reactivations leading to casualties are rare, but might be underdiagnosed. We report two young adults, one previously healthy and one immunosuppressed, with rare diagnostic patterns of HBoV1 respiratory tract infection. Both patients exhibited very high loads of HBoV1 DNA in respiratory samples. The immunosuppressed patient was also HBoV1 DNA-positive in blood, stool and a colon biopsy, but exhibited prior HBoV1-specific high-avidity IgG and weak IgM positivity 9 months before the respiratory symptoms. Likewise, the previously healthy patient exhibited HBoV1 IgG of high avidity and very weak IgM in serum, pointing to prior immunity, but with a seroconversion in cerebrospinal fluid. This patient also showed strong HBoV2 cross-reactivity. The molecular and serological results, together with their ages, suggest that both patients exhibited unusual reinfection or reactivation of HBoV1, contributing to neurological deficits and death.
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- 2021
8. Serodiagnosis of Human Bocavirus 1 Infection among Hospitalised Children with Lower Respiratory Tract Infection in Latvia
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Man Xu, Klaus Hedman, Zaiga Nora-Krūkle, Dace Gardovska, Modra Murovska, Anda Vilmane, Maria Söderlund-Venermo, Inga Ziemele, Santa Rasa-Dzelzkalēja, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, University of Helsinki, Doctoral Programme in Biomedicine, HUSLAB, Klaus Hedman / Principal Investigator, University Management, Medicum, and Virus infections and immunity
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0301 basic medicine ,medicine.medical_specialty ,General interest ,Science ,030106 microbiology ,education ,human bocavirus ,serology ,Serology ,03 medical and health sciences ,0302 clinical medicine ,children ,Internal medicine ,Lower respiratory tract infection ,medicine ,030212 general & internal medicine ,Multidisciplinary ,biology ,Human bocavirus ,biology.organism_classification ,medicine.disease ,cytokines ,3. Good health ,lower respiratory tract infection ,3111 Biomedicine - Abstract
Since its discovery in 2005, human bocavirus 1 (HBoV1) has globally been one of the most common respiratory viruses. It is currently accepted that HBoV1 is a pathogen, causing upper and lower respiratory tract infections (LRTIs) in children. However, due to the prolonged HBoV1 DNA shedding from the upper airways and the subsequent high rate of co-detections with other respiratory viruses, the interpretation of positive polymerase chain reaction results is challenging. The aim of this study was to identify acute HBoV1 infections by the presence of HBoV1-specific IgM and IgG measured by competition enzyme immunoassay, to elucidate the induction of Th1/Th2 cytokines, and to describe the clinical characteristics associated with acute HBoV1 infection in hospitalised children less than five years of age with LRTI. HBoV1 IgM was detected in 19/102 (18.6%) and IgG in 66/102 (64.7%) patients. HBoV1 IgM was most frequently found in patients aged 13 to 24 months. Pneumonia and acute wheezing were the most common clinical diagnoses among HBoV1 IgM positive patients. The seroprevalence of HBoV1-specific IgG increased with age, reaching 85% by the age of five years. INF-γ, IL-4, IL-5, and IL-10 were observed to be higher in patients with acute HBoV1 infection.
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- 2019
9. TRIBUTE TO MAVIS AGBANDJE-MCKENNA A Beautiful Mind and the Heart of an Explorer
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Almendral, Jose M., Asokan, Aravind, Berns, Kenneth I., Chapman, Michael, Chatterjee, Sawati, Chiorini, Jay, Flotte, Terry, Gao, Guangping, Grimm, Dirk, Hauswirth, William, Heilbronn, Regine, Kleinschmidt, Juergen, Kotin, Robert, Lisowski, Leszek, Logan, Grant, Alexander, Ian, Long, Joanna, Lyumkis, Dmitry, Nathwani, Amit, Parrish, Colin, Ritschel, Pat, Snijder, Joost, Heck, Albert J. R., Snyder, Richard, Söderlund-Venermo, Maria, Srivastava, Arun, Suh, Junghae, Tattersall, Peter, Cotmore, Susan, Wilson, Jim, Sub Biomol.Mass Spectrometry & Proteom., Afd Biomol.Mass Spect. and Proteomics, Biomolecular Mass Spectrometry and Proteomics, Biosciences, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, and University of Helsinki
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318 Medical biotechnology ,education ,3111 Biomedicine - Abstract
Non
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- 2021
10. pH-Induced Conformational Changes of Human Bocavirus Capsids
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Mario Mietzsch, Duncan Sousa, Maria Söderlund-Venermo, Robert McKenna, Mengxiao Luo, Mavis Agbandje-McKenna, Paul R. Chipman, Chen Xu, John M. Spear, Kangkang Song, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, and University of Helsinki
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Antigenicity ,Immunology ,human bocavirus ,cysteine modifications ,cryo-electron microscopy ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Virology ,capsid structure ,Tropism ,030304 developmental biology ,11832 Microbiology and virology ,0303 health sciences ,biology ,030306 microbiology ,Parvovirus ,Structure and Assembly ,parvovirus ,Human bocavirus ,low-pH conditions ,Heparan sulfate ,histidine modifications ,HBoV2 ,biology.organism_classification ,Sialic acid ,Cell biology ,chemistry ,Capsid ,Insect Science ,Tissue tropism - Abstract
Human bocavirus 1 (HBoV1) and HBoV2 to-4 infect children and immunocompromised individuals, resulting in respiratory and gastrointestinal infections, respectively. Using cryo-electron microscopy and image reconstruction, the HBoV2 capsid structure was determined to 2.7-angstrom resolution at pH 7.4 and compared to the previously determined HBoV1, HBoV3, and HBoV4 structures. Consistent with previous findings, surface variable region III (VR-III) of the capsid protein VP3, proposed as a host tissue tropism determinant, was structurally similar among the gastrointestinal strains HBoV2 to-4, but differed from that of HBoV1 with its tropism for the respiratory tract. Toward understanding the entry and trafficking properties of these viruses, HBoV1 and HBoV2 were further analyzed as species representatives of the two HBoV tropisms. Their cell surface glycan-binding characteristics were analyzed, and capsid structures determined to 2.5-to 2.7-angstrom resolution at pHs 5.5 and 2.6, conditions normally encountered during infection. The data showed that glycans with terminal sialic acid, galactose, GlcNAc, or heparan sulfate moieties do not facilitate HBoV1 or HBoV2 cellular attachment. With respect to trafficking, conformational changes common to both viruses were observed under low-pH conditions localized to the VP N terminus under the 5-fold channel, in the surface loops VR-I and VR-V and specific side chain residues such as cysteines and histidines. The 5-fold conformational movements provide insight into the potential mechanism of VP N-terminal dynamics during HBoV infection, and side chain modifications highlight pH-sensitive regions of the capsid. IMPORTANCE Human bocaviruses (HBoVs) are associated with disease in humans. However, the lack of an animal model and a versatile cell culture system to study their life cycle limits the ability to develop specific treatments or vaccines. This study presents the structure of HBoV2, at 2.7-A resolution, determined for comparison to the existing HBoV1, HBoV3, and HBoV4 structures, to enable the molecular characterization of strain and genus-specific capsid features contributing to tissue tropism and antigenicity. Furthermore, HBoV1 and HBoV2 structures determined under acidic conditions provide insight into capsid changes associated with endosomal and gastrointestinal acidification. Structural rearrangements of the capsid VP N terminus, at the base of the 5-fold channel, demonstrate a disordering of a "basket" motif as pH decreases. These observations begin to unravel the molecular mechanism of HBoV infection and provide information for control strategies.
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- 2021
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11. Human Protoparvovirus DNA and IgG in Children and Adults with and without Respiratory or Gastrointestinal Infections
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Mohanraj, Ushanandini, Jokinen, Maija, Thapa, Rajita Rayamajhi, Paloniemi, Minna, Vesikari, Timo, Lappalainen, Maija, Tarkka, Eveliina, Nora-Krūkle, Zaiga, Vilmane, Anda, Vettenranta, Kim, Mangani, Charles, Oikarinen, Sami, Fan, Yue-Mei, Ashorn, Per, Väisänen, Elina, Söderlund-Venermo, Maria, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Medicum, Department of Virology, University of Helsinki, HUSLAB, Clinicum, Department of Diagnostics and Therapeutics, HUS Children and Adolescents, University Management, Lastentautien yksikkö, Children's Hospital, Tampere University, Clinical Medicine, BioMediTech, University of Zurich, and Mohanraj, Ushanandini
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Adult ,Male ,Malawi ,Adolescent ,Gastrointestinal Diseases ,Respiratory Tract Diseases ,lcsh:QR1-502 ,bufavirus ,cutavirus ,serology ,3121 Internal medicine ,Article ,lcsh:Microbiology ,Cohort Studies ,Parvoviridae Infections ,10127 Institute of Evolutionary Biology and Environmental Studies ,Feces ,Young Adult ,Virology ,Nasopharynx ,Humans ,Child ,Finland ,Phylogeny ,Aged ,Aged, 80 and over ,11832 Microbiology and virology ,parvovirus ,tusavirus ,leukemia ,Infant ,2725 Infectious Diseases ,Middle Aged ,Latvia ,respiratory-tract infection ,Infectious Diseases ,PCR ,Child, Preschool ,DNA, Viral ,2406 Virology ,570 Life sciences ,biology ,590 Animals (Zoology) ,Female ,3111 Biomedicine ,gastroenteritis - Abstract
Three human protoparvoviruses, bufavirus (BuV), tusavirus (TuV) and cutavirus (CuV), have recently been discovered in diarrheal stool. BuV has been associated with diarrhea and CuV with cutaneous T-cell lymphoma, but there are hardly any data for TuV or CuV in stool or respiratory samples. Hence, using qPCR and IgG enzyme immunoassays, we analyzed 1072 stool, 316 respiratory and 445 serum or plasma samples from 1098 patients with and without gastroenteritis (GE) or respiratory-tract infections (RTI) from Finland, Latvia and Malawi. The overall CuV-DNA prevalences in stool samples ranged between 0-6.1% among our six patient cohorts. In Finland, CuV DNA was significantly more prevalent in GE patients above rather than below 60 years of age (5.1% vs 0.2%). CuV DNA was more prevalent in stools among Latvian and Malawian children compared with Finnish children. In 10/11 CuV DNA-positive adults and 4/6 CuV DNA-positive children with GE, no known causal pathogens were detected. Interestingly, for the first time, CuV DNA was observed in two nasopharyngeal aspirates from children with RTI and the rare TuV in diarrheal stools of two adults. Our results provide new insights on the occurrence of human protoparvoviruses in GE and RTI in different countries. publishedVersion
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- 2021
12. Characterization of the GBoV1 capsid and its antibody interactions
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Julia Fakhiri, Aurelija Žvirblienė, Indrė Kučinskaitė-Kodzė, Paul R. Chipman, Jennifer C. Yu, Alberto Jimenez Ybargollin, Mavis Agbandje-McKenna, Amriti Singh, Nilakshee Bhattacharya, Shweta Kailasan, Robert McKenna, Mario Mietzsch, Dirk Grimm, Maria Söderlund-Venermo, Amit Kapoor, Department of Virology, and Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact
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0301 basic medicine ,Antigenicity ,medicine.drug_class ,030106 microbiology ,lcsh:QR1-502 ,Gene delivery ,Cross Reactions ,Monoclonal antibody ,Antibodies, Viral ,lcsh:Microbiology ,Article ,bocavirus ,03 medical and health sciences ,Transduction (genetics) ,Virology ,Human bocavirus ,medicine ,capsid ,Animals ,Humans ,Peptide sequence ,11832 Microbiology and virology ,Gorilla gorilla ,biology ,Chemistry ,Cryoelectron Microscopy ,parvovirus ,antigenicity ,cryo-EM ,gene therapy ,Antibodies, Monoclonal ,biology.organism_classification ,Molecular biology ,3. Good health ,030104 developmental biology ,Infectious Diseases ,Capsid ,biology.protein ,Antibody - Abstract
Human bocavirus 1 (HBoV1) has gained attention as a gene delivery vector with its ability to infect polarized human airway epithelia and 5.5 kb genome packaging capacity. Gorilla bocavirus 1 (GBoV1) shares 86% amino acid sequence identity with HBoV1, but has better transduction efficiency in several human cell types. Here, we report the capsid structure of GBoV1 determined to 2.76 Å resolution using cryo-electron microscopy (cryo-EM), and its interaction with mouse monoclonal antibodies (mAbs) and human sera. GBoV1 shares capsid surface morphologies with parvoviruses, with a channel at the 5-fold symmetry axis, protrusions surrounding the 3-fold axis, and a depression at the 2-fold axis. A 2/5-fold wall separates the 2-fold and 5-fold axes. Compared to HBoV1, differences are localized to the 3-fold protrusions. Consistently, native dot immunoblots and cryo-EM showed cross-reactivity and binding, respectively, by a 5-fold targeted HBoV1 mAb, 15C6. Surprisingly, recognition was observed for one out of three 3-fold targeted mAbs, 12C1, indicating some structural similarity at this region. In addition, GBoV1, tested against 40 human sera, showed the same level of seroprevalence as HBoV1. Immunogenic reactivity against parvoviral vectors is a significant barrier to efficient gene delivery. This study is a step towards optimizing bocaparvovirus vectors with antibody escape properties. Human bocavirus 1 (HBoV1) has gained attention as a gene delivery vector with its ability to infect polarized human airway epithelia and 5.5 kb genome packaging capacity. Gorilla bocavirus 1 (GBoV1) VP3 shares 86% amino acid sequence identity with HBoV1 but has better transduction efficiency in several human cell types. Here, we report the capsid structure of GBoV1 determined to 2.76 angstrom resolution using cryo-electron microscopy (cryo-EM) and its interaction with mouse monoclonal antibodies (mAbs) and human sera. GBoV1 shares capsid surface morphologies with other parvoviruses, with a channel at the 5-fold symmetry axis, protrusions surrounding the 3-fold axis and a depression at the 2-fold axis. A 2/5-fold wall separates the 2-fold and 5-fold axes. Compared to HBoV1, differences are localized to the 3-fold protrusions. Consistently, native dot immunoblots and cryo-EM showed cross-reactivity and binding, respectively, by a 5-fold targeted HBoV1 mAb, 15C6. Surprisingly, recognition was observed for one out of three 3-fold targeted mAbs, 12C1, indicating some structural similarity at this region. In addition, GBoV1, tested against 40 human sera, showed the similar rates of seropositivity as HBoV1. Immunogenic reactivity against parvoviral vectors is a significant barrier to efficient gene delivery. This study is a step towards optimizing bocaparvovirus vectors with antibody escape properties.
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- 2021
13. Persistent human bocavirus 1 infection and tonsillar immune responses
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Emilia Mikola, Tuomas Jartti, Cezmi A. Akdis, Oscar Palomares, Lotta E. Ivaska, Mübeccel Akdis, Tuomo Puhakka, Riitta Turunen, Antti Silvoniemi, Matti Waris, Maria Söderlund-Venermo, University of Zurich, Ivaska, Lotta E, University of Helsinki, HUS Children and Adolescents, Children's Hospital, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Department of Virology
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T‐regulatory ,medicine.medical_treatment ,CHILDREN ,forkheadbox protein 3 ,RORC2 ,Serology ,0302 clinical medicine ,10183 Swiss Institute of Allergy and Asthma Research ,cytokine ,Immunology and Allergy ,RAR‐related orphan receptor C 2 ,transcription factor ,0303 health sciences ,biology ,Human bocavirus ,FOXP3 ,3. Good health ,Lymphatic system ,Cytokine ,medicine.anatomical_structure ,2723 Immunology and Allergy ,VIRUS ,Pulmonary and Respiratory Medicine ,Immunology ,human bocavirus ,BETA ,610 Medicine & health ,03 medical and health sciences ,Immune system ,stomatognathic system ,T-regulatory ,medicine ,PARVOVIRUS ,030304 developmental biology ,2403 Immunology ,RAR-related orphan receptor C 2 ,business.industry ,Research ,T‐helper17 ,RC581-607 ,biology.organism_classification ,Tonsillectomy ,2740 Pulmonary and Respiratory Medicine ,Tonsil ,3121 General medicine, internal medicine and other clinical medicine ,tonsil ,RNA ,T-helper(17) ,Immunologic diseases. Allergy ,business ,030215 immunology - Abstract
Background Persistent human bocavirus 1 (HBoV1) infection is a common finding in patients suffering from chronic tonsillar disease. However, the associations between HBoV1 infection and specific immune reactions are not completely known. We aimed to compare in vivo expression of T-cell cytokines, transcription factors, and type I/III interferons in human tonsils between HBoV1-positive and -negative tonsillectomy patients. Methods Tonsil tissue samples, nasopharyngeal aspirate (NPA), and serum samples were obtained from 143 immunocompetent adult and child tonsillectomy patients. HBoV1 and 14 other respiratory viruses were detected in NPAs and tonsil tissues by polymerase chain reaction (PCR). Serology and semi-quantitative PCR were used for diagnosing HBoV1 infections. Expression of 14 cytokines and transcription factors (IFN-alpha, IFN-beta, IFN-gamma, IL-10, IL-13, IL-17, IL-28, IL-29, IL-37, TGF-beta, FOXP3, GATA3, RORC2, Tbet) was analyzed by quantitative reverse-transcription (RT)-PCR in tonsil tissues. Results HBoV1 was detected by PCR in NPA and tonsils from 25 (17%) study patients. Serology results indicated prior nonacute infections in 81% of cases. Tonsillar cytokine responses were affected by HBoV1 infection. The suppression of two transcription factors, RORC2 and FOXP3, was associated with HBoV1 infection (p < 0.05). Furthermore, intratonsillar HBoV1-DNA loads correlated negatively with IFN-lambda family cytokines and IL-13. Conclusions Our study shows distinctively decreased T-helper(17) and T-regulatory type immune responses in local lymphoid tissue in HBoV1-positive tonsillectomy patients. HBoV1 may act as a suppressive immune modulator.
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- 2021
14. Reorganizing the familyParvoviridae : a revised taxonomy independent of the canonical approach based on host association
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Judit J Pénzes, Susan F. Cotmore, Anna Maria Eis-Hübinger, Joseph Hughes, Marta Canuti, Balázs Harrach, Maria Söderlund-Venermo, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, and University of Helsinki
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Paraphyly ,food.ingredient ,Subfamily ,ORGANIZATION ,UNIQUE ,Biology ,Host Specificity ,Parvoviridae ,Parvoviridae Infections ,03 medical and health sciences ,Viral Proteins ,food ,GENUS ,Virology ,Animals ,Humans ,PARVOVIRUS ,Phylogeny ,030304 developmental biology ,DENSOVIRUS ,11832 Microbiology and virology ,0303 health sciences ,030306 microbiology ,Parvovirus ,Ambidensovirus ,General Medicine ,biology.organism_classification ,GENOME ,Densovirinae ,Evolutionary biology ,Penstyldensovirus ,EXPRESSION STRATEGY ,DISCOVERY ,VIRUS ,3111 Biomedicine ,Densovirus ,GENETIC-CHARACTERIZATION - Abstract
Parvoviridae, a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae, in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed “chapparvoviruses”, which have proven to be more closely related to viruses in certain Densovirinae genera than to members of the Parvovirinae. Viruses belonging to these genera, namely Brevi-, Hepan- and Penstyldensovirus, are responsible for the unmatched heterogeneity of the subfamily Densovirinae when compared to the Parvovirinae in matters of genome organization, protein sequence homology, and phylogeny. Another genus of Densovirinae, Ambidensovirus, has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily, Hamaparvovirinae, resolves the paraphyly within genus Ambidensovirus, and introduces new genera and species into the subfamily Parvovirinae. These proposals were accepted by the ICTV in 2020 March.
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- 2020
15. Structural Characterization of Cuta- and Tusavirus : Insight into Protoparvoviruses Capsid Morphology
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Maria Ilyas, Jennifer C. Yu, Robert McKenna, David L. Smith, Paul R. Chipman, Joshua A. Hull, Yi Lasanajak, J. Kennon Smith, Elina Väisänen, Mario Mietzsch, Maria Söderlund-Venermo, Mavis Agbandje-McKenna, Justin J. Kurian, Department of Virology, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and University of Helsinki
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0301 basic medicine ,PORCINE PARVOVIRUS ,Cryo-electron microscopy ,Protein Conformation ,viruses ,lcsh:QR1-502 ,medicine.disease_cause ,lcsh:Microbiology ,Transduction (genetics) ,chemistry.chemical_compound ,capsid ,human pathogen ,TRANSFERRIN RECEPTOR ,protoparvovirus ,Child ,AFFINITY ,11832 Microbiology and virology ,MINUTE VIRUS ,biology ,16. Peace & justice ,3. Good health ,Cell biology ,Infectious Diseases ,Capsid ,sialic acid ,Receptors, Virus ,Adult ,Glycan ,Viral protein ,030106 microbiology ,LEUCINE ,Virus Attachment ,macromolecular substances ,Sialic acid binding ,TRANSDUCTION ,Article ,Parvoviridae Infections ,03 medical and health sciences ,Polysaccharides ,Virology ,SIALIC-ACID BINDING ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Parvovirus ,Cryoelectron Microscopy ,parvovirus ,CANINE PARVOVIRUS ,Sequence Analysis, DNA ,glycan receptor ,biology.organism_classification ,DIARRHEA ,N-Acetylneuraminic Acid ,Sialic acid ,030104 developmental biology ,chemistry ,biology.protein ,cryo-EM ,Capsid Proteins ,BUFAVIRUS - Abstract
Several members of the Protoparvovirus genus, capable of infecting humans, have been recently discovered, including cutavirus (CuV) and tusavirus (TuV). To begin the characterization of these viruses, we have used cryo-electron microscopy and image reconstruction to determine their capsid structures to ~2.9 Å, resolution, and glycan array and cell-based assays to identify glycans utilized for cellular entry. Structural comparisons show that the CuV and TuV capsids share common features with other parvoviruses, including an eight-stranded anti-parallel &beta, barrel, depressions at the icosahedral 2-fold and surrounding the 5-fold axes, and a channel at the 5-fold axes. However, the viruses exhibit significant topological differences in their viral protein surface loops. These result in three separated 3-fold protrusions, similar to the bufaviruses also infecting humans, suggesting a host-driven structure evolution. The surface loops contain residues involved in receptor binding, cellular trafficking, and antigenic reactivity in other parvoviruses. In addition, terminal sialic acid was identified as the glycan potentially utilized by both CuV and TuV for cellular entry, with TuV showing additional recognition of poly-sialic acid and sialylated Lewis X (sLeXLeXLeX) motifs reported to be upregulated in neurotropic and cancer cells, respectively. These structures provide a platform for annotating the cellular interactions of these human pathogens.
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- 2020
16. Impact of Natural or Synthetic Singletons in the Capsid of Human Bocavirus 1 on Particle Infectivity and Immunoreactivity
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Dirk Grimm, Paul Schnitzler, Oliver Schildgen, Maria Söderlund-Venermo, Marc A. Schneider, Mavis Agbandje-McKenna, Man Xu, Julia Fakhiri, Kai-Philipp Linse, Michael Meister, Mario Mietzsch, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, and University of Helsinki
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EXPRESSION ,BoV ,viruses ,Immunology ,Genetic Vectors ,Vectors in gene therapy ,Microbiology ,Virus ,bocavirus ,Parvoviridae Infections ,03 medical and health sciences ,Transduction (genetics) ,Gene Delivery ,0302 clinical medicine ,Transduction, Genetic ,Virology ,Human bocavirus ,capsid ,Humans ,Gene ,MUTATION ,030304 developmental biology ,HIGH-EFFICIENCY TRANSDUCTION ,Parvoviridae ,11832 Microbiology and virology ,0303 health sciences ,MINUTE VIRUS ,SEROTYPE VECTORS ,NP1 ,biology ,Parvovirus ,Virus Assembly ,Genetic Therapy ,biology.organism_classification ,mutations ,EVOLUTION ,3. Good health ,MICE ,HEK293 Cells ,Capsid ,030220 oncology & carcinogenesis ,Insect Science ,DNA, Viral ,CELLS ,Capsid Proteins ,3111 Biomedicine ,HUMAN PARVOVIRUS - Abstract
Human bocavirus 1 (HBoV1) is a parvovirus that gathers increasing attention due to its pleiotropic role as a pathogen and emerging vector for human gene therapy. Curiously, albeit a large variety of HBoV1 capsid variants has been isolated from human samples, only one has been studied as a gene transfer vector to date. Here, we analyzed a cohort of HBoV1-positive samples and managed to PCR amplify and sequence 29 distinct HBoV1 capsid variants. These differed from the originally reported HBoV1 reference strain in 32 nucleotides or four amino acids, including a frequent change of threonine to serine at position 590. Interestingly, this T590S mutation was associated with lower viral loads in infected patients. Analysis of the time course of infection in two patients for up to 15 weeks revealed a gradual accumulation of T590S, concurrent with drops in viral loads. Surprisingly, in a recombinant vector context, T590S was beneficial and significantly increased titers compared to that of T590 variants but had no major impact on their transduction ability or immunoreactivity. Additional targeted mutations in the HBoV1 capsid identified several residues that are critical for transduction, capsid assembly, or DNA packaging. Our new findings on the phylogeny, infectivity, and immunoreactivity of HBoV1 capsid variants improve our understanding of bocaviral biology and suggest strategies to enhance HBoV1 gene transfer vectors. IMPORTANCE The family of Parvoviridae comprises a wide variety of members that exhibit a unique biology and that are concurrently highly interesting as a scaffold for the development of human gene therapy vectors. A most notable example is human bocavirus 1 (HBoV1), which we and others have recently harnessed to cross-package and deliver recombinant genomes derived from another parvovirus, the adeno-associated virus (AAV). Here, we expanded the repertoire of known HBoV1 variants by cloning 29 distinct HBoV1 capsid sequences from primary human samples and by analyzing their properties as AAV/HBoV1 gene transfer vectors. This led to our discovery of a mutational hot spot at HBoV1 capsid position 590 that accumulated in two patients during natural infection and that lowers viral loads but increases vector yields. Thereby, our study expands our current understanding of HBoV1 biology in infected human subjects and concomitantly provides avenues to improve AAV/HBoV1 gene transfer vectors.
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- 2020
17. The landscape of persistent human DNA viruses in femoral bone
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Maria F. Perdomo, Diogo Pratas, Klaus Hedman, Mari Toppinen, Antti Sajantila, Elina Väisänen, Maria Söderlund-Venermo, Klaus Hedman / Principal Investigator, Virus infections and immunity, Department of Virology, University of Helsinki, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, HUSLAB, Helsinki University Hospital Area, Department of Forensic Medicine, and PaleOmics Laboratory
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0301 basic medicine ,Forensic Genetics ,Male ,Torque teno virus ,Human dna ,DISTRIBUTION PATTERNS ,viruses ,JC virus ,Human provenance ,Parvovirus B19 genotype 2, Papillomavirus 31 ,medicine.disease_cause ,Polymerase Chain Reaction ,chemistry.chemical_compound ,0302 clinical medicine ,Genotype ,HISTORY ,Parvovirus B19, Human ,Femur ,TT VIRUS ,Aged, 80 and over ,biology ,BK POLYOMAVIRUS ,High-Throughput Nucleotide Sequencing ,319 Forensic science and other medical sciences ,ASSOCIATION ,Middle Aged ,3. Good health ,PREVALENCE ,Viral evolution ,NGS ,Female ,JC VIRUS ,Adult ,HUMAN PARVOVIRUS B19 ,Pathology and Forensic Medicine ,03 medical and health sciences ,Genetics ,medicine ,Humans ,030216 legal & forensic medicine ,Aged ,Femoral bone ,Parvovirus ,Sequence Analysis, DNA ,biology.organism_classification ,Virology ,EVOLUTION ,030104 developmental biology ,chemistry ,DNA, Viral ,DNA viruses ,DNA - Abstract
The imprints left by persistent DNA viruses in the tissues can testify to the changes driving virus evolution as well as provide clues on the provenance of modern and ancient humans. However, the history hidden in skeletal remains is practically unknown, as only parvovirus B19 and hepatitis B virus DNA have been detected in hard tissues so far. Here, we investigated the DNA prevalences of 38 viruses in femoral bone of recently deceased individuals. To this end, we used quantitative PCRs and a custom viral targeted enrichment followed by next generation sequencing. The data was analyzed with a tailor-made bioinformatics pipeline. Our findings revealed bone to be a much richer source of persistent DNA viruses than earlier perceived, discovering ten additional ones, including several members of the herpesand polyomavirus families, as well as human papillomavirus 31 and torque teno virus. Remarkably, many of the viruses found have oncogenic potential and/or may reactivate in the elderly and immunosuppressed individuals. Thus, their persistence warrants careful evaluation of their clinical significance and impact on bone biology. Our findings open new frontiers for the study of virus evolution from ancient relics as well as provide new tools for the investigation of human skeletal remains in forensic and archaeological contexts.
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- 2020
18. Global Distribution of Human Protoparvoviruses
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Ali M Barakat, Klaus Hedman, Dufton Mwaengo, Olli Vapalahti, Ushanandini Mohanraj, Eric Delwart, Pikka Jokelainen, Farid Azizi Jalilian, Moses Masika, Mohammadreza Sadeghi, Amir Majlesi, Haider Al-Hello, Omu Anzala, Elina Väisänen, Maria Söderlund-Venermo, Paula M. Kinnunen, Department of Virology, Medicum, Olli Pekka Vapalahti / Principal Investigator, Veterinary Pathology and Parasitology, Veterinary Biosciences, Veterinary Microbiology and Epidemiology, Viral Zoonosis Research Unit, Clinicum, Klaus Hedman / Principal Investigator, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
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Male ,0301 basic medicine ,FECES ,Epidemiology ,lcsh:Medicine ,cutavirus ,CHILDREN ,Antibodies, Viral ,Global Health ,Parvovirus ,DOMESTIC PIGS ,ACUTE DIARRHEA ,Geographic difference ,Aged, 80 and over ,biology ,medicine.diagnostic_test ,Age Factors ,Middle Aged ,global distribution ,3. Good health ,Diarrhea ,Infectious Diseases ,Population Surveillance ,Female ,human protoparvovirus ,medicine.symptom ,gastroenteritis ,Adult ,Microbiology (medical) ,medicine.medical_specialty ,HUMAN BUFAVIRUS ,bufavirus ,Cross Reactions ,ta3111 ,CHINA ,lcsh:Infectious and parasitic diseases ,Parvoviridae Infections ,Global Distribution of Human Protoparvoviruses ,Young Adult ,03 medical and health sciences ,parvoviridae ,medicine ,Humans ,lcsh:RC109-216 ,viruses ,cutaneous T-cell lymphoma ,serologic analysis ,Feces ,Aged ,Parvoviridae ,IDENTIFICATION ,Research ,enteric infections ,lcsh:R ,Cutaneous T-cell lymphoma ,PARVOVIRUSES ,tusavirus ,medicine.disease ,biology.organism_classification ,Virology ,030104 developmental biology ,Immunoglobulin G ,Skin biopsy ,3111 Biomedicine - Abstract
Development of next-generation sequencing and metagenomics has revolutionized detection of novel viruses. Among these viruses are 3 human protoparvoviruses: bufavirus, tusavirus, and cutavirus. These viruses have been detected in feces of children with diarrhea. In addition, cutavirus has been detected in skin biopsy specimens of cutaneous T-cell lymphoma patients in France and in 1 melanoma patient in Denmark. We studied seroprevalences of IgG against bufavirus, tusavirus, and cutavirus in various populations (n = 840), and found a striking geographic difference in prevalence of bufavirus IgG. Although prevalence was low in adult populations in Finland (1.9%) and the United States (3.6%), bufavirus IgG was highly prevalent in populations in Iraq (84.8%), Iran (56.1%), and Kenya (72.3%). Conversely, cutavirus IgG showed evenly low prevalences (0%-5.6%) in all cohorts, and tusavirus IgG was not detected. These results provide new insights on the global distribution and endemic areas of protoparvoviruses.
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- 2018
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19. Serologically diagnosed acute human bocavirus 1 infection in childhood community-acquired pneumonia
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Nascimento-Carvalho, Amanda C., Vilas-Boas, Ana-Luisa, Fontoura, Maria-Socorro H., Xu, Man, Vuorinen, Tytti, Söderlund-Venermo, Maria, Ruuskanen, Olli, Nascimento-Carvalho, Cristiana M., PNEUMOPAC-Efficacy Study Grp, Doctoral Programme in Biomedicine, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Medicum, Department of Virology, and University of Helsinki
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Male ,0301 basic medicine ,SAMPLES ,RESPIRATORY VIRUS-INFECTIONS ,INFANTS ,CHILDREN ,Polymerase Chain Reaction ,DISEASE ,0302 clinical medicine ,Community-acquired pneumonia ,Nasopharyngeal aspirate ,3123 Gynaecology and paediatrics ,Human bocavirus ,Prospective Studies ,030212 general & internal medicine ,Prospective cohort study ,biology ,3. Good health ,respiratory virus ,Community-Acquired Infections ,Child, Preschool ,Original Article: Respiratory Infections ,Respiratory virus ,Female ,BURDEN ,Brazil ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Pneumonia, Viral ,030106 microbiology ,Virus ,Parvoviridae Infections ,03 medical and health sciences ,Internal medicine ,Lower respiratory tract infection ,medicine ,Humans ,business.industry ,Infant ,Original Articles ,ta3121 ,biology.organism_classification ,medicine.disease ,Virology ,ta3123 ,Pneumonia ,SEVERITY ,Immunoglobulin M ,Immunoglobulin G ,Respiratory Infections ,Pediatrics, Perinatology and Child Health ,acute respiratory infection ,lower respiratory tract infection ,3111 Biomedicine ,viral infection ,business - Abstract
Aim To assess the role of human bocavirus 1 (HBoV1) as a causative agent of non‐severe community‐acquired pneumonia (CAP) in children. Methods Patients aged 2‐59 months with non‐severe CAP (respiratory complaints and radiographic pulmonary infiltrate/consolidation) attending a University Hospital in Salvador, Brazil were enrolled in a prospective cohort. From 820 recruited children in a clinical trial (http://ClinicalTrials.gov NCT01200706), nasopharyngeal aspirate (NPA), and acute and convalescent serum samples were obtained from 759 (92.6%) patients. NPAs were tested for 16 respiratory viruses by PCR. Acute HBoV1 infection was confirmed by measuring specific IgM and IgG responses in paired serum samples. Results Respiratory viruses were detected in 693 (91.3%; 95%CI: 89.1‐93.2) CAP cases by PCR. HBoV1‐DNA was detected in 159 (20.9%; 95%CI: 18.2‐24.0) cases. Of these 159 PCR positive cases, acute HBoV1 infection was confirmed serologically in 38 cases (23.9%; 95%CI: 17.8‐31.0). Overall, acute HBoV1 infection was confirmed in 5.0% (38/759) of non‐severe CAP patients. HBoV1 was detected in 151 cases with at least one other virus making 31.7% of all multiple virus (n = 477) detections. Among all 759 cases, 216 had one respiratory virus detected, and sole HBoV1 was detected in only 8 (3.7%). Acute HBoV1 infection was serologically diagnosed in 34 (22.5%) HBoV1‐DNA‐positive cases with another virus, compared to 4 (50.0%) cases with sole virus detection (p = 0.09). Conclusion HBoV1 was detected by PCR in one fifth of the children with non‐severe CAP and acute HBoV1 infection was serologically confirmed in one quarter of these cases.
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- 2018
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20. Extinct type of human parvovirus B19 persists in tonsillar B cells
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Elina Mäntylä, Lari Pyöriä, Taru Ilmarinen, Klaus Hedman, Maria Söderlund-Venermo, Leena-Maija Aaltonen, Maija Vihinen-Ranta, Mari Toppinen, Lea Hedman, Maria F. Perdomo, Medicum, Department of Virology, Clinicum, Korva-, nenä- ja kurkkutautien klinikka, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, HUS Head and Neck Center, and Virus infections and immunity
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0301 basic medicine ,SYNOVIAL TISSUE ,viruses ,Palatine Tonsil ,General Physics and Astronomy ,Antibodies, Viral ,Genotype ,INFECTION ,Parvovirus B19, Human ,REAL-TIME PCR ,Child ,Cells, Cultured ,B-Lymphocytes ,Multidisciplinary ,biology ,cell type harbouring ,virus diseases ,U937 Cells ,Middle Aged ,3. Good health ,HUMAN ERYTHROVIRUSES ,solut ,Real-time polymerase chain reaction ,medicine.anatomical_structure ,PLASMA-CELLS ,Child, Preschool ,GENETIC DIVERSITY ,Antibody ,Adult ,Cell type ,Adolescent ,BONE-MARROW ,Science ,030106 microbiology ,QUANTITATIVE PCR ,ta3111 ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Parvoviridae Infections ,Young Adult ,03 medical and health sciences ,Immune system ,Cell Line, Tumor ,medicine ,Humans ,Aged ,B cells ,parvovirus B19 ,Parvovirus ,Monocyte ,ta1182 ,General Chemistry ,DNA ,virus types ,biology.organism_classification ,Virology ,CELLULAR CORECEPTOR ,030104 developmental biology ,Cell culture ,DNA, Viral ,Immunology ,biology.protein ,cells ,3111 Biomedicine - Abstract
Parvovirus B19 (B19V) DNA persists lifelong in human tissues, but the cell type harbouring it remains unclear. We here explore B19V DNA distribution in B, T and monocyte cell lineages of recently excised tonsillar tissues from 77 individuals with an age range of 2–69 years. We show that B19V DNA is most frequent and abundant among B cells, and within them we find a B19V genotype that vanished from circulation >40 years ago. Since re-infection or re-activation are unlikely with this virus type, this finding supports the maintenance of pathogen-specific humoral immune responses as a consequence of B-cell long-term survival rather than continuous replenishment of the memory pool. Moreover, we demonstrate the mechanism of B19V internalization to be antibody dependent in two B-cell lines as well as in ex vivo isolated tonsillar B cells. This study provides direct evidence for a cell type accountable for B19V DNA tissue persistence., The cell type that hosts parvovirus B19 (B19V) DNA lifelong is currently unknown. Here, the authors identify tonsillar B cells as a reservoir, detect an extinct B19V type in older adults, supporting a long-term association, and show that B19V uptake into B cells is antibody dependent.
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- 2017
21. Virome of US bovine calf serum
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Xiang-Jin Meng, David J. Hurley, Xutao Deng, Eric Delwart, Tung Gia Phan, Tanja Opriessnig, Danielle M. Yugo, Beatrix Kapusinszky, Mohammadreza Sadeghi, Isis Kanevsky, Amelia R. Woolums, Medicum, Klaus Hedman / Principal Investigator, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Department of Virology
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0301 basic medicine ,Viral metagenomics ,food.ingredient ,VIRUSES ,viruses ,Hepacivirus ,030106 microbiology ,CATTLE ,BIOLOGICAL PRODUCTS ,Bioengineering ,Applied Microbiology and Biotechnology ,Parvovirus ,CULTURE ,PORCINE ,03 medical and health sciences ,food ,Human virome ,Bovine serum albumin ,Pharmacology ,IDENTIFICATION ,PLASMA ,General Immunology and Microbiology ,biology ,Bosavirus ,BEEF HERDS ,virus diseases ,General Medicine ,Bovine parvovirus ,biology.organism_classification ,Virology ,FAMILY ,Copiparvovirus ,030104 developmental biology ,HEPACIVIRUS ,biology.protein ,Metagenomics ,Cell culture ,3111 Biomedicine ,Fetal bovine serum ,Biotechnology - Abstract
Using viral metagenomics we analyzed four bovine serum pools assembled from 715 calves in the United States. Two parvoviruses, bovine parvovirus 2 (BPV2) and a previously uncharacterized parvovirus designated as bosavirus (BosaV), were detected in 3 and 4 pools respectively and their complete coding sequences generated. Based on NS1 protein identity, bosavirus qualifies as a member of a new species in the copiparvovirus genus. Also detected were low number of reads matching ungulate tetraparvovirus 2, bovine hepacivirus, and several papillomaviruses. This study further characterizes the diversity of viruses in calf serum with the potential to infect fetuses and through fetal bovine serum contaminate cell cultures. (C) 2017 International Alliance for Biological Standardization. Published by Elsevier Ltd. All rights reserved.
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- 2017
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22. Cutavirus DNA in Malignant and Nonmalignant Skin of Cutaneous T-Cell Lymphoma and Organ Transplant Patients but Not of Healthy Adults
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Sari Pitkänen, Sari Koskenmies, Klaus Hedman, Yu Fu, Annamari Ranki, Anne Keinonen, Yilin Wang, Nanna Fyhrquist, Heikki Mäkisalo, Elina Väisänen, Maria Söderlund-Venermo, Liisa Väkevä, Department of Virology, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Medicum, HUMI - Human Microbiome Research, Department of Bacteriology and Immunology, Klaus Hedman / Principal Investigator, Department of Dermatology, Allergology and Venereology, Clinicum, HUS Inflammation Center, HUS Abdominal Center, IV kirurgian klinikka, HUSLAB, and Virus infections and immunity
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Male ,0301 basic medicine ,Skin Neoplasms ,Cyclohexanecarboxylic Acids ,Biopsy ,Antibodies, Viral ,Gastroenterology ,Organ transplantation ,Cohort Studies ,0302 clinical medicine ,Parvovirinae ,hemic and lymphatic diseases ,INFECTION ,030212 general & internal medicine ,protoparvovirus ,1183 Plant biology, microbiology, virology ,Aged, 80 and over ,Melanoma ,PARVOVIRUS B19 DNA ,Middle Aged ,Healthy Volunteers ,Lymphoma, T-Cell, Cutaneous ,3. Good health ,Infectious Diseases ,Real-time polymerase chain reaction ,Female ,Adult ,Microbiology (medical) ,medicine.medical_specialty ,skin ,030106 microbiology ,education ,Immunocompromised Host ,Young Adult ,03 medical and health sciences ,Internal medicine ,medicine ,Humans ,cancer ,Aged ,Mycosis fungoides ,business.industry ,Cutaneous T-cell lymphoma ,parvovirus ,disease association ,PERSISTENCE ,Cancer ,Organ Transplantation ,medicine.disease ,DIARRHEA ,Transplant Recipients ,Lymphoma ,Transplantation ,DNA, Viral ,3111 Biomedicine ,business ,BUFAVIRUS - Abstract
Background Three new parvoviruses of Protoparvovirus genus, bufavirus (BuV), tusavirus (TuV), and cutavirus (CuV), have recently been discovered in diarrheal stools. CuV was further detected in a proportion of cutaneous T-cell lymphoma (CTCL)/mycosis fungoides skin samples and in one melanoma. Patients and methods With novel multiplex quantitative polymerase chain reaction and antibody assays, we studied 3 patient groups for BuV, TuV, and CuV DNA and immunoglobulin G (IgG): CTCL patients, immunosuppressed solid-organ transplant recipients, and immunocompetent healthy adults. Results CuV DNA was detected in skin biopsies of 4/25 (16.0%) CTCL and 4/136 (2.9%) transplant patients but not in any of 159 skin samples of 98 healthy adults. The dermal CuV-DNA prevalence was significantly higher in CTCL patients than in the other subjects. CuV DNA was further detected in healthy skin of 4 organ transplant recipients, 2 of whom also had CuV-positive skin carcinomas. One CTCL patient harbored CuV DNA in both malignant (CTCL, melanoma) and nonmalignant skin and sentinel lymph nodes but not in his prostate. The CuV IgG seroprevalences were among CTCL patients 9.5% (4/42), transplant recipients 6.5% (8/124), and healthy adults 3.8% (3/78). BuV and TuV DNAs were absent and antibodies infrequent in all cohorts. Parvoviral antibodies were shown to persist for ≥20 years and dermal CuV DNA for 4 years. All 3 CuV-DNA-positive patients, with both biopsies and sera available, were CuV-IgG positive. Conclusion Our results suggest that dermal CuV DNA carriage is associated with CTCL. Any putative roles of CuV in the carcinogenesis must be determined in forthcoming studies.
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- 2019
23. Respiratory tract virus infections in the elderly with pneumonia
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Maarit Wuorela, Mohammadreza Sadeghi, Tytti Vuorinen, Maria Söderlund-Venermo, Mira Hämeenaho, Ia Kohonen, Tuomas Jartti, Laura Viikari, Matti Viitanen, Matti Aronen, Department of Virology, Medicum, University of Helsinki, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and RNA virus replication and antivirals
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Male ,BACTERIAL ,Etiology ,Rhinovirus ,lcsh:Geriatrics ,Respiratory syncytial virus ,medicine.disease_cause ,Parainfluenza virus ,Cohort Studies ,0302 clinical medicine ,Elderly ,Community-acquired pneumonia ,Nasopharynx ,030212 general & internal medicine ,Prospective Studies ,Respiratory Tract Infections ,Aged, 80 and over ,biology ,VIRAL-INFECTIONS ,SYNCYTIAL VIRUS ,C-REACTIVE PROTEIN ,TIME ,3. Good health ,Virus ,medicine.anatomical_structure ,Respiratory ,Respiratory virus ,Female ,Seasons ,Research Article ,medicine.medical_specialty ,Pneumonia, Viral ,ILLNESS ,03 medical and health sciences ,Internal medicine ,medicine ,Humans ,Aged ,Bacterial disease ,business.industry ,C-reactive protein ,INFLUENZA-A ,COMMUNITY-ACQUIRED PNEUMONIA ,Length of Stay ,medicine.disease ,respiratory tract diseases ,lcsh:RC952-954.6 ,Pneumonia ,3121 General medicine, internal medicine and other clinical medicine ,biology.protein ,Geriatrics and Gerontology ,Pulmonary disease ,business ,Influenza virus ,030217 neurology & neurosurgery ,Respiratory tract ,Follow-Up Studies - Abstract
Background In children suffering from severe lower airway illnesses, respiratory virus detection has given good prognostic information, but such reports in the elderly are scarce. Therefore, our aim was to study whether the detection of nasopharyngeal viral pathogens and conventional inflammatory markers in the frail elderly correlate to the presence, signs and symptoms or prognosis of radiographically-verified pneumonia. Methods Consecutive episodes of hospital care of patients 65 years and older with respiratory symptoms (N = 382) were prospectively studied as a cohort. Standard clinical questionnaire was filled by the study physician. Laboratory analyses included PCR diagnostics of nasopharyngeal swab samples for 14 respiratory viruses, C-reactive protein (CRP) and white blood cell count (WBC). Chest radiographs were systematically analysed by a study radiologist. The length of hospital stay, hospital revisit and death at ward were used as clinical endpoints. Results Median age of the patients was 83 years (range 76–90). Pneumonia was diagnosed in 112/382 (29%) of the studied episodes. One or more respiratory viruses were detected in 141/382 (37%) episodes and in 34/112 (30%) episodes also diagnosed with pneumonia. Pneumonia was associated with a WBC over 15 × 109/L (P = .006) and a CRP value over 80 mg/l (P
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- 2019
24. ICTV Virus Taxonomy Profile : Parvoviridae
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ICTV Report Consortium, Cotmore, Susan F., Agbandje-McKenna, Mavis, Canuti, Marta, Soderlund-Venermo, Maria, Tattersall, Peter, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, Medicum, and University of Helsinki
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taxonomy ,Parvovirinae ,Densovirinae ,ICTV Report ,3111 Biomedicine ,Parvoviridae - Abstract
Members of the family Parvoviridae are small, resilient, non-enveloped viruses with linear, single-stranded DNA genomes of 4-6 kb. Viruses in two subfamilies, the Parvovirinae and Densovirinae, are distinguished primarily by their respective ability to infect vertebrates (including humans) versus invertebrates. Being genetically limited, most parvoviruses require actively dividing host cells and are host and/or tissue specific. Some cause diseases, which range from subclinical to lethal. A few require co-infection with helper viruses from other families. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the Parvoviridae, which is available at www.ictv.global/report/parvoviridae. Non
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- 2019
25. Newly detected DNA viruses in juvenile nasopharyngeal angiofibroma (JNA) and oral and oropharyngeal squamous cell carcinoma (OSCC/OPSCC)
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Mari Toppinen, Maria Söderlund-Venermo, Klaus Hedman, Suvi Silén, Yilin Wang, Antti Mäkitie, Man Xu, Yu Fu, Mohammadreza Sadeghi, Amy Dickinson, Timo Carpén, Clinicum, Korva-, nenä- ja kurkkutautien klinikka, Doctoral Programme in Biomedicine, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, Klaus Hedman / Principal Investigator, University of Helsinki, Medicum, Department of Ophthalmology and Otorhinolaryngology, HUS Head and Neck Center, Virus infections and immunity, and RNA virus replication and antivirals
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Male ,Pathology ,Juvenile nasopharyngeal angiofibroma ,viruses ,Merkel cell polyomavirus ,Angiofibroma ,0302 clinical medicine ,Genotype ,INFECTION ,Parvovirus B19, Human ,Medicine ,Merkel cell virus ,030223 otorhinolaryngology ,Head and neck cancer ,Aged, 80 and over ,biology ,virus diseases ,General Medicine ,Middle Aged ,3. Good health ,Oropharyngeal Neoplasms ,Real-time polymerase chain reaction ,030220 oncology & carcinogenesis ,Carcinoma, Squamous Cell ,Female ,Polyomavirus ,Human parvovirus B19 ,Adult ,medicine.medical_specialty ,Adolescent ,Short Communication ,QUANTITATIVE PCR ,Real-Time Polymerase Chain Reaction ,Protoparvovirus ,Bocavirus ,03 medical and health sciences ,Young Adult ,Humans ,HEAD ,3125 Otorhinolaryngology, ophthalmology ,Oral Cavity Squamous Cell Carcinoma ,Aged ,business.industry ,Parvovirus ,PERSISTENCE ,Cancer ,Nasopharyngeal Neoplasms ,biology.organism_classification ,medicine.disease ,DNA extraction ,Otorhinolaryngology ,DNA, Viral ,business - Abstract
PurposeApproximately 20% of cancers are estimated to have a viral etiology. We aimed to investigate whether DNA of 8 human parvoviruses [bocavirus 1-4 (HBoV1-4), parvovirus B19 (B19V), protoparvoviruses (bufa-, tusa-, and cutavirus)] and 13 human polyomaviruses (HPyV) can be detected in oropharyngeal and oral cavity squamous cell carcinoma (OPSCC/OSCC), and in juvenile nasopharyngeal angiofibroma (JNA) tissue samples.MethodsFresh samples of seven JNA tissues and ten paired tissues of OSCC/OPSCC tumor and adjacent healthy tissues were collected. DNA extraction and real-time PCRs were performed to detect HBoV1-4, B19V, bufa- tusa- and cutavirus, and HPyV genomes.ResultsJNA specimens were negative for all parvoviruses tested, whereas one JNA sample was Merkel cell polyomavirus (MCPyV) DNA positive. The OSCC/OPSCC samples were negative for the human protoparvoviruses, HBoV1-4, and all human polyomaviruses, except for one patient that was MCPyV DNA positive in both healthy and tumor tissues. Seven OSCC/OPSCC patients were positive for B19V DNA, three of them in both healthy and cancerous tissues and three in only healthy tissues. Three of the B19V DNA-positive patients harbored viral genotype 1, three genotype 2, and one genotype 3B.ConclusionsThese are the first reports of MCPyV and B19V DNA being detected in JNA and OPSCC. The significance of viral DNA positivity is unclear. B19V DNA is known to remain in the tissues lifelong, however, it is of interest that there are some patients with B19 DNA in healthy tissue, but not in the corresponding cancer tissue.
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- 2019
26. No Correlation Between Nasopharyngeal Human Bocavirus 1 Genome Load and mRNA Detection or Serology in Adeno-/Tonsillectomy Patients
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Tytti Vuorinen, Tuomo Puhakka, Tobias Allander, Matti Waris, Tuomas Jartti, Lotta E. Ivaska, Maria Söderlund-Venermo, Andreas Christensen, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, Medicum, and University of Helsinki
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diagnosis ,Palatine Tonsil ,detection ,serology ,CHILDREN ,law.invention ,Serology ,law ,Nasopharyngeal aspirate ,Human bocavirus ,Nasopharynx ,Immunology and Allergy ,Child ,Polymerase chain reaction ,Finland ,0303 health sciences ,biology ,Middle Aged ,Viral Load ,3. Good health ,Infectious Diseases ,Real-time polymerase chain reaction ,medicine.anatomical_structure ,Child, Preschool ,RNA, Viral ,medicine.symptom ,Adult ,Adolescent ,Genome, Viral ,Asymptomatic ,Sensitivity and Specificity ,bocavirus ,Parvoviridae Infections ,03 medical and health sciences ,Young Adult ,stomatognathic system ,medicine ,otorhinolaryngologic diseases ,Humans ,RNA, Messenger ,030304 developmental biology ,Aged ,Tonsillectomy ,030306 microbiology ,Parvovirus ,business.industry ,parvovirus ,Infant ,biology.organism_classification ,Virology ,Tonsil ,tonsil ,DNA, Viral ,3111 Biomedicine ,business - Abstract
Human bocavirus 1 (HBoV1) can persist in nasopharynx and tonsils. Using HBoV1 serology, reverse-transcription polymerase chain reaction (PCR) for detecting messenger RNA (mRNA) and quantitative PCR for HBoV1 genome load count, we studied to what extent the HBoV1 DNA loads in nasopharynx correlate with acute infection markers. Tonsillar tissue, nasopharyngeal aspirate, and serum were obtained from 188 elective adeno-/tonsillectomy patients. Relatively high loads of HBoV1 DNA were detected in the nasopharynx of 14 (7%) primarily asymptomatic subjects with negative mRNA and/or serodiagnostic results. Quantitative HBoV1 DNA PCR may have lower specificity than HBoV1 mRNA detection for diagnosing symptomatic infection.
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- 2019
27. Comparison of phenotypic and genotypic diagnosis of acute human bocavirus 1 infection in children
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Zaiga Nora-Krukle, Juha Koskinen, Heli Aatola, Klaus Hedman, Andrea H. L. Bruning, Nicola Isabelle Kols, Maria Söderlund-Venermo, Ville Peltola, Andreas Christensen, Janne O. Koskinen, Aurelija Zvirbliene, Hanna Toivola, Tytti Vuorinen, Man Xu, Medical Microbiology and Infection Prevention, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, HUSLAB, University of Helsinki, Klaus Hedman / Principal Investigator, Medicum, and Virus infections and immunity
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Male ,0301 basic medicine ,law.invention ,Parvovirus ,Automation ,chemistry.chemical_compound ,0302 clinical medicine ,law ,Human bocavirus ,Diagnosis ,Genotype ,Medicine ,030212 general & internal medicine ,Child ,Antigens, Viral ,Respiratory Tract Infections ,1183 Plant biology, microbiology, virology ,Polymerase chain reaction ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Viral Load ,3. Good health ,Reverse transcription polymerase chain reaction ,Phenotype ,Infectious Diseases ,Rapid antigen detection assay ,RNA, Viral ,Female ,MESSENGER-RNA ,Respiratory tract infection ,Point-of-Care Systems ,030106 microbiology ,Human bocavirus 1 ,Pediatric infection ,Sensitivity and Specificity ,Article ,Parvoviridae Infections ,03 medical and health sciences ,Antigen ,Virology ,Humans ,RNA, Messenger ,business.industry ,biology.organism_classification ,Reverse transcriptase ,chemistry ,DNA, Viral ,Immunology ,3111 Biomedicine ,business ,DNA - Abstract
Highlights • Diagnosis of HBoV1 has been based on detection of DNA or mRNA. • Rapid HBoV1 antigen detection is beneficial for diagnosing acute HBoV1 infections. • HBoV1 antigen detection is attractive for point-of-care use., Background Diagnosis of human bocavirus 1 (HBoV1) has been based on qualitative PCRs detecting HBoV1 DNA or detection of HBoV1 mRNA. Objective This study aims to assess whether a rapid and automated HBoV1 antigen test is suitable for diagnosis of acute HBoV1 infection. Study design HBoV1 antigen detection has been compared with quantitative HBoV1 DNA PCR and HBoV1 mRNA RT-PCR. Results and conclusion We conclude that HBoV1 antigen detection has higher clinical specificity and positive predictive value than HBoV1 DNA qualitative PCRs, yet a lower sensitivity than HBoV1 mRNA detection. Additionally, HBoV1 antigen detection is beneficial in its rapidity and availability as a point-of-care test.
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- 2019
28. A Toxicity Screening Approach to Identify Bacteriophage-Encoded Anti-Microbial Proteins
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Ushanandini Mohanraj, Xing Wan, Mikael Skurnik, Cindy M. Spruit, Maria Pajunen, Medicum, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, Antimicrobials, probiotics and fermented food, Department of Bacteriology and Immunology, Helsinki One Health (HOH), Mikael Skurnik / Principal Investigator, HUSLAB, Helsinki University Hospital Area, HUMI - Human Microbiome Research, Glycoscience Group, and University Management
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0301 basic medicine ,Models, Molecular ,Proteomics ,bacteriophages ,Protein Conformation ,Cloning vector ,Genomics ,toxic ,medicine.disease_cause ,Article ,Microbiology ,Bacteriophage ,03 medical and health sciences ,Structure-Activity Relationship ,Viral Proteins ,HPUF ,Antibiotic resistance ,Bacteriolysis ,Virology ,medicine ,Escherichia coli ,Amino Acid Sequence ,1183 Plant biology, microbiology, virology ,antibacterials ,030102 biochemistry & molecular biology ,biology ,Bacteria ,screening ,φR1-RT ,Pathogenic bacteria ,assay ,biology.organism_classification ,Virology & Molecular Biology ,Virologie & Moleculaire Biologie ,030104 developmental biology ,Infectious Diseases - Abstract
The rapid emergence of antibiotic resistance among many pathogenic bacteria has created a profound need to discover new alternatives to antibiotics. Bacteriophages, the viruses of microbes, express special proteins to overtake the metabolism of the bacterial host they infect, the best known of which are involved in bacterial lysis. However, the functions of majority of bacteriophage encoded gene products are not known, i.e., they represent the hypothetical proteins of unknown function (HPUFs). In the current study we present a phage genomics-based screening approach to identify phage HPUFs with antibacterial activity with a long-term goal to use them as leads to find unknown targets to develop novel antibacterial compounds. The screening assay is based on the inhibition of bacterial growth when a toxic gene is expression-cloned into a plasmid vector. It utilizes an optimized plating assay producing a significant difference in the number of transformants after ligation of the toxic and non-toxic genes into a cloning vector. The screening assay was first tested and optimized using several known toxic and non-toxic genes. Then, it was applied to screen 94 HPUFs of bacteriophage &phi, R1-RT, and identified four HPUFs that were toxic to Escherichia coli. This optimized assay is in principle useful in the search for bactericidal proteins of any phage, and also opens new possibilities to understanding the strategies bacteriophages use to overtake bacterial hosts.
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- 2019
29. Human Bocavirus Infection Markers in Peripheral Blood and Stool Samples of Children with Acute Gastroenteritis
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Zaiga Nora-Krukle, Man Xu, Maria Söderlund-Venermo, Dace Gardovska, Modra Murovska, Elina Silina, Santa Rasa, Anda Vilmane, Inga Ziemele, Doctoral Programme in Biomedicine, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, Medicum, and University of Helsinki
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0301 basic medicine ,Male ,lcsh:QR1-502 ,medicine.disease_cause ,Antibodies, Viral ,HOSPITALIZED CHILDREN ,lcsh:Microbiology ,Feces ,Prevalence ,Respiratory system ,Dna viral ,acute gastroenteritis ,Child ,1183 Plant biology, microbiology, virology ,biology ,Human bocavirus ,3. Good health ,Gastroenteritis ,Infectious Diseases ,Child, Preschool ,Female ,Antibody ,human bocavirus ,UNITED-STATES ,Article ,Parvoviridae Infections ,03 medical and health sciences ,children ,Virology ,medicine ,Humans ,HBOV ,Parvoviridae ,business.industry ,Infant, Newborn ,Infant ,Acute gastroenteritis ,biology.organism_classification ,Peripheral blood ,030104 developmental biology ,Immunoglobulin M ,Immunoglobulin G ,Immunology ,DNA, Viral ,Norovirus ,biology.protein ,3111 Biomedicine ,business ,Biomarkers ,Blood Chemical Analysis - Abstract
Human bocaviruses (HBoVs) 1&ndash, 4 belong to the Parvoviridae family, and they infect the respiratory or gastrointestinal tracts in children. We investigated the prevalence of HBoV1&ndash, 4 DNAs in the blood and stool samples, and of HBoV1&ndash, 4 IgG and IgM in the plasma samples, of children presenting with acute gastroenteritis (AGE). In addition, we identified HBoV co-infections with the five most frequent gastrointestinal pathogens. A total of 83 paired blood and stool samples were collected from children aged five years or less. Infection markers of HBoV1, 2, or 3 (viral DNA in blood and/or stool and/or antibodies) were detected in 61 out of 83 (73.5%) patients. HBoV1, 2, or 3 DNA as a monoinfection was revealed in 18.1%, 2.4%, and 1.2%, respectively, and 21.7% in total. In 56.1% of the HBoV DNA-positive patients, the presence in stool of another virus&mdash, most frequently norovirus or rotavirus&mdash, was observed. In conclusion, this study, for the first time, illustrates the prevalence and genetic diversity of HBoVs in Latvian children with gastroenteritis, and shows a widespread distribution of these viruses in the community. HBoV1 and 2 are commonly found as single infectious agents in children with AGE, suggesting that the viruses can be as pathogenic by themselves as other enteric agents are.
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- 2018
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30. Atomic Resolution Structures of Human Bufaviruses Determined by Cryo-Electron Microscopy
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Duncan Sousa, Mario Mietzsch, Maria Söderlund-Venermo, Maria Ilyas, Elina Väisänen, Justin J. Kurian, Mengxiao Luo, Paul R. Chipman, Mavis Agbandje-McKenna, Robert McKenna, James Kennon Smith, Shweta Kailasan, Department of Virology, Medicum, University of Helsinki, and Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact
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Models, Molecular ,0301 basic medicine ,ADENOASSOCIATED VIRUS-2 ,PORCINE PARVOVIRUS ,EMPTY CAPSIDS ,Cryo-electron microscopy ,parvoviruses ,viruses ,lcsh:QR1-502 ,Protoparvovirus ,medicine.disease_cause ,Parvoviridae ,lcsh:Microbiology ,Virus-like particle ,Image Processing, Computer-Assisted ,cryo-EM and image reconstruction ,Peptide sequence ,ELECTRON-MICROSCOPY ,biology ,Chemistry ,3. Good health ,Infectious Diseases ,Capsid ,CELLULAR RECEPTOR ,food.ingredient ,HUMAN PARVOVIRUS B19 ,Viral protein ,030106 microbiology ,bufavirus ,Serogroup ,Article ,03 medical and health sciences ,Imaging, Three-Dimensional ,food ,Virology ,medicine ,single-stranded DNA virus ,Humans ,Amino Acid Sequence ,COMPLEX ,Parvovirus ,SURFACE LOOPS ,Cryoelectron Microscopy ,biology.organism_classification ,DIARRHEA ,Crystallography ,030104 developmental biology ,Capsid Proteins ,3111 Biomedicine ,HUMAN PROTOPARVOVIRUSES - Abstract
Bufavirus strain 1 (BuV1), a member of the Protoparvovirus genus of the Parvoviridae, was first isolated from fecal samples of children with acute diarrhea in Burkina Faso. Since this initial discovery, BuVs have been isolated in several countries, including Finland, the Netherlands, and Bhutan, in pediatric patients exhibiting similar symptoms. Towards their characterization, the structures of virus-like particles of BuV1, BuV2, and BuV3, the current known genotypes, have been determined by cryo-electron microscopy and image reconstruction to 2.84, 3.79, and 3.25 angstrom, respectively. The BuVs, 65-73% identical in amino acid sequence, conserve the major viral protein, VP2, structure and general capsid surface features of parvoviruses. These include a core -barrel (B-I), -helix A, and large surface loops inserted between these elements in VP2. The capsid contains depressions at the icosahedral 2-fold and around the 5-fold axes, and has three separated protrusions surrounding the 3-fold axes. Structure comparison among the BuVs and to available parvovirus structures revealed capsid surface variations and capsid 3-fold protrusions that depart from the single pinwheel arrangement of the animal protoparvoviruses. These structures provide a platform to begin the molecular characterization of these potentially pathogenic viruses.
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- 2018
31. Detection and monitoring of human bocavirus 1 infection by a new rapid antigen test
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Andrea H. L. Bruning, Klaus Hedman, Petri Susi, H. Aatola, Andreas Christensen, Aurelija Zvirbliene, Maria Söderlund-Venermo, Janne O. Koskinen, Hanna Toivola, Medicum, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Department of Virology, Klaus Hedman / Principal Investigator, Virus infections and immunity, Graduate School, and Medical Microbiology and Infection Prevention
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0301 basic medicine ,Point-of-care testing ,030106 microbiology ,education ,ta3111 ,Microbiology ,Asymptomatic ,Virus ,New Technologies for Infectious and Tropical Diseases ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,respiratory infection ,Human bocavirus ,rapid antigen detection assay ,medicine ,lcsh:RC109-216 ,030212 general & internal medicine ,human bocavirus 1 ,point-of-care test ,biology ,business.industry ,ta1183 ,ta1182 ,Respiratory infection ,biology.organism_classification ,3. Good health ,Infectious Diseases ,medicine.anatomical_structure ,Rapid antigen test ,Immunology ,3111 Biomedicine ,medicine.symptom ,business ,Respiratory tract - Abstract
Clinically relevant diagnosis of human bocavirus 1 (HBoV1) is challenging, as the virus is frequently detected in asymptomatic patients, and cofindings with other respiratory viruses are common. The clinical value of current diagnostic methods, such as PCR, is therefore low, and alternative diagnostic strategies are needed. We describe for the first time the use of an antigen detection assay for the rapid identification of HBoV1 in a paediatric patient with respiratory tract infection symptoms. We estimate the duration of active HBoV1 infection to be 6 days.
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- 2016
32. Human Protoparvoviruses
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Vaisanen, Elina, Fu, Yu, Hedman, Klaus, Soderlund-Venermo, Maria, Department of Virology, Medicum, Clinicum, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
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FECES ,HUMAN BUFAVIRUS ,IDENTIFICATION ,VIRUSES ,bufavirus ,tusavirus ,cutavirus ,RECOMBINATION ,CHILDREN ,emerging viruses ,DOMESTIC PIGS ,ACUTE DIARRHEA ,INFECTION ,PARVOVIRUS ,epidemiology ,human protoparvovirus ,cutaneous T-cell lymphoma ,3111 Biomedicine ,gastroenteritis ,discovery - Abstract
Next-generation sequencing and metagenomics have revolutionized the discovery of novel viruses. In recent years, three novel protoparvoviruses have been discovered in fecal samples of humans: bufavirus (BuV) in 2012, tusavirus (TuV) in 2014, and cutavirus (CuV) in 2016. BuV has since been studied the most, disclosing three genotypes that also represent serotypes. Besides one nasal sample, BuV DNA has been found exclusively in diarrheal feces, but not in non-diarrheal feces, suggesting a causal relationship. According to both geno- and seroprevalences, BuV appears to be the most common of the three novel protoparvoviruses, whereas TuV DNA has been found in only a single fecal sample, with antibody detection being equally rare. Moreover, the TuV sequence is closer to those of non-human protoparvoviruses, and so the evidence of TuV being a human virus is thus far insufficient. Interestingly, besides in feces, CuV has also been detected in skin biopsies of patients with cutaneous T-cell lymphoma and a patient with melanoma, while all other skin samples have tested PCR negative. Even if preliminary disease associations exist, the full etiological roles of these viruses in human disease are yet to be resolved.
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- 2017
33. Microsphere-based antibody assays for human parvovirus B19V, CMV and T. gondii
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Amal Elfaitouri, Maija Lappalainen, Klaus Hedman, Jonas Blomberg, Lea Hedman, Maria F. Perdomo, Arun Kumar, Yilin Wang, Maria Söderlund-Venermo, Agnes Bölin-Wiener, Klaus Hedman / Principal Investigator, Medicum, Department of Virology, Clinicum, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
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0301 basic medicine ,B19V ,Antibodies, Protozoan ,Cytomegalovirus ,Infektionsmedicin ,EPITOPE ,Antibodies, Viral ,Immunoglobulin G ,Serology ,Immunoenzyme Techniques ,0302 clinical medicine ,Pregnancy ,Parvovirus B19, Human ,Multiplex ,030212 general & internal medicine ,Child ,Microsphere-based suspension immuno assay ,Immunoassay ,biology ,medicine.diagnostic_test ,CMV ,Middle Aged ,Microspheres ,3. Good health ,Infectious Diseases ,Technical Advance ,INFECTIONS ,Virus Diseases ,Child, Preschool ,Antibody ,Toxoplasma ,Adult ,Infectious Medicine ,Adolescent ,030106 microbiology ,Congenital cytomegalovirus infection ,Singleplex and multiplex ,DIAGNOSIS ,03 medical and health sciences ,Young Adult ,parasitic diseases ,medicine ,Humans ,Serologic Tests ,T. gondii ,Toxoplasma gondii ,biology.organism_classification ,medicine.disease ,Virology ,Immunoglobulin M ,Immunology ,biology.protein ,3111 Biomedicine - Abstract
Background Human parvovirus B19 (B19V), cytomegalovirus (CMV) and Toxoplasma gondii (T. gondii) may cause intrauterine infections with potentially severe consequences to the fetus. Current serodiagnosis of these infections is based on detection of antibodies most often by EIA and individually for each pathogen. We developed singleplex and multiplex microsphere-based Suspension Immuno Assays (SIAs) for the simultaneous detection of IgG antibodies against B19V, CMV and T. gondii. Methods We tested the performances of SIAs as compared to in-house and commercial reference assays using serum samples from well-characterized cohorts. Results The IgG SIAs for CMV and T. gondii showed good concordance with the corresponding Vidas serodiagnostics. The B19V IgG SIA detected IgG in all samples collected >10 days after onset of symptoms and showed high concordance with EIAs (in-house and Biotrin). The serodiagnostics for these three pathogens performed well in multiplex format. Conclusions We developed singleplex and multiplex IgG SIAs for the detection of anti-B19V,-CMV and -T. gondii antibodies. The SIAs were highly sensitive and specific, and had a wide dynamic range. These components thus should be suitable for construction of a multiplex test for antibody screening during pregnancy. Electronic supplementary material The online version of this article (doi:10.1186/s12879-015-1194-3) contains supplementary material, which is available to authorized users.
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- 2016
34. Bones hold the key to DNA virus history and epidemiology
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Samantha Lycett, Klaus Hedman, Mari Toppinen, Maria F. Perdomo, Antti Sajantila, Jorma Palo, Peter Simmonds, Maria Söderlund-Venermo, Department of Virology, Medicum, Forensic Medicine, Klaus Hedman / Principal Investigator, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Virus infections and immunity, and PaleOmics Laboratory
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Most recent common ancestor ,HUMAN PARVOVIRUS B19 ,Genotype ,World War II ,MARROW CELL-CULTURES ,Exhumation ,Biology ,Real-Time Polymerase Chain Reaction ,Article ,Bone and Bones ,VIRAL EVOLUTION ,Parvoviridae Infections ,EMERGENCE ,03 medical and health sciences ,Virology ,INFECTION ,Cadaver ,Parvovirus B19, Human ,Prevalence ,ANCIENT DNA ,Humans ,PHYLOGENETIC ANALYSIS ,Phylogeny ,030304 developmental biology ,Genetics ,0303 health sciences ,Multidisciplinary ,IDENTIFICATION ,030306 microbiology ,Viral Epidemiology ,Parvovirus ,PERSISTENCE ,Haplotype ,DNA virus ,History, 20th Century ,biology.organism_classification ,HUMAN ERYTHROVIRUSES ,Europe ,Military Personnel ,Ancient DNA ,TISSUE ,Viral evolution ,DNA, Viral ,REPLICATION ,3111 Biomedicine ,USSR - Abstract
DNA in human skeletal remains represents an important historical source of host genomic information and potentially of infecting viruses. However, little is known about viral persistence in bone. We searched ca. 70-year-old long bones of putative Finnish casualties from World War II for parvovirus B19 (B19V) DNA and found a remarkable prevalence of 45%. The viral sequences were exclusively of genotypes 2 (n = 41), which disappeared from circulation in 1970´s, or genotype 3 (n = 2), which has never been reported in Northern Europe. Based on mitochondrial and Y-chromosome profiling, the two individuals carrying B19V genotype 3 were likely from the Soviet Red Army. The most recent common ancestor for all genotypes was estimated at early 1800s. This work demonstrates the forms of B19V that circulated in the first half of the 20th century and provides the first evidence of the suitability of bone for exploration of DNA viruses.
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- 2015
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35. B-Cell Responses to Human Bocaviruses 1-4: New Insights from a Childhood Follow-Up Study
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Riitta Veijola, Mikael Knip, Kalle Kantola, Lea Hedman, Olli Simell, Klaus Hedman, Marjaana Mäkinen, Juulia Partanen, Heikki Hyöty, Maria Söderlund-Venermo, Ville Simell, Mohammadreza Sadeghi, Jorma Toppari, Laura Tanner, Jorma Ilonen, Lääketieteen yksikkö - School of Medicine, University of Tampere, Department of Virology, Klaus Hedman / Principal Investigator, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Medicum, Clinicum, University of Helsinki, Mikael Knip / Principal Investigator, Children's Hospital, Lastentautien yksikkö, Diabetes and Obesity Research Program, Research Programs Unit, HUS Children and Adolescents, and Virus infections and immunity
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Male ,lcsh:Medicine ,CHILDREN ,Antibodies, Viral ,Immunoglobulin G ,DISEASE ,Serology ,INFLUENZA-A VIRUSES ,Seroepidemiologic Studies ,Human bocavirus ,Original antigenic sin ,lcsh:Science ,Child ,ANTIBODY-DEPENDENT ENHANCEMENT ,RISK ,B-Lymphocytes ,Multidisciplinary ,ASSOCIATION ,3. Good health ,Child, Preschool ,Female ,Antibody ,Research Article ,Adolescent ,Biolääketieteet - Biomedicine ,Biology ,Real-Time Polymerase Chain Reaction ,DENGUE VIRUS-INFECTION ,Virus ,Parvoviridae Infections ,ACUTE GASTROENTERITIS ,Humans ,Antibody-dependent enhancement ,Serologic Tests ,Viremia ,LINE U937 ,lcsh:R ,Infant ,Correction ,biology.organism_classification ,Virology ,ta3123 ,Immunoglobulin M ,Immunology ,DNA, Viral ,biology.protein ,lcsh:Q ,3111 Biomedicine ,ORIGINAL ANTIGENIC SIN ,Follow-Up Studies - Abstract
Human bocaviruses (HBoVs) 1–4 are recently discovered, antigenically similar parvoviruses. We examined the hypothesis that the antigenic similarity of these viruses could give rise to clinically and diagnostically important immunological interactions. IgG and IgM EIAs as well as qPCR were used to study ~2000 sera collected from infancy to early adolescence at 3–6-month intervals from 109 children whose symptoms were recorded. We found that HBoV1-4-specific seroprevalences at age 6 years were 80%, 48%, 10%, and 0%, respectively. HBoV1 infections resulted in significantly weaker IgG responses among children who had pre-existing HBoV2 IgG, and vice versa. Furthermore, we documented a complete absence of virus type-specific immune responses in six viremic children who had pre-existing IgG for another bocavirus, indicating that not all HBoV infections can be diagnosed serologically. Our results strongly indicate that interactions between consecutive HBoV infections affect HBoV immunity via a phenomenon called “original antigenic sin”, cross-protection, or both; however, without evident clinical consequences but with important ramifications for the serodiagnosis of HBoV infections. Serological data is likely to underestimate human exposure to these viruses. Public Library of Science open access
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- 2015
36. Comparative Analysis of Whole-Genome Sequences of Influenza A(H1N1)pdm09 Viruses Isolated from Hospitalized and Nonhospitalized Patients Identifies Missense Mutations That Might Be Associated with Patient Hospital Admissions in Finland during 2009 to 2014
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Teija Ojala, Denis E. Kainov, Ilkka Julkunen, Christian Benner, Triin Lakspere, Hannimari Kallio-Kokko, Polina Mishel, Petri Jalovaara, Niina Ikonen, Matti Kankainen, Anu Kantele, Samuli Ripatti, Laura Kakkola, Dmitrii Bychkov, Medicum, Department of Pharmacology, Institute for Molecular Medicine Finland, Helsinki Institute for Information Technology, Clinicum, Anu Kantele-Häkkinen Research Group, Department of Medicine, Denis Kainov / Principal Investigator, Samuli Olli Ripatti / Principal Investigator, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Biostatistics Helsinki, Complex Disease Genetics, and Statistical and population genetics
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Genetics ,0303 health sciences ,030306 microbiology ,viruses ,education ,virus diseases ,Influenza a ,Biology ,Genome ,3. Good health ,Preliminary analysis ,03 medical and health sciences ,Viruses ,Missense mutation ,3111 Biomedicine ,Molecular Biology ,030304 developmental biology - Abstract
Here, we report 40 new whole-genome sequences of influenza A(H1N1)pdm09 viruses isolated from Finnish patients during 2009 to 2014. A preliminary analysis of these and 186 other whole genomes of influenza A(H1N1)pdm09 viruses isolated from hospitalized and nonhospitalized patients during 2009 to 2014 in Finland revealed several viral mutations that might be associated with patient hospitalizations.
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- 2015
37. Bufavirus genotype 3 in Turkish children with severe diarrhea
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Kamruddin Ahmed, Gulendam Bozdayi, Akira Nishizono, Takashi Matsumoto, Takaaki Yahiro, Figen Sahin, Aylin Altay, Seçil Özkan, Maria Söderlund-Venermo, Medicum, Department of Virology, and Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact
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Microbiology (medical) ,Severe diarrhoea ,Diarrhea ,Male ,Pediatrics ,medicine.medical_specialty ,Genotype ,Turkey ,Turkish ,Sequence Homology ,Genome, Viral ,Parvoviridae Infections ,Parvovirus ,Feces ,children ,Bufavirus ,Virology ,Internal medicine ,Epidemiology ,medicine ,Asian country ,Prevalence ,Humans ,Phylogeny ,biology ,business.industry ,digestive, oral, and skin physiology ,Infant ,General Medicine ,Sequence Analysis, DNA ,biology.organism_classification ,language.human_language ,3. Good health ,diarrhoea ,Infectious Diseases ,Child, Preschool ,language ,Female ,Seasons ,3111 Biomedicine ,business - Abstract
Recently a parvovirus called bufavirus (BuV) has been implicated as a causative agent of diarrhoea. To further reveal the epidemiology and genetic characteristics of BuV, this study was performed in Turkish children with diarrhoea. BuV was detected in 1.4% (8/583) of stool samples. All stool samples from healthy children (n = 148) were negative for BuV. Diarrhoea in BuV-positive patients was severe and occurred mainly during the colder months of the year. Complete genome sequences were generated from four BuVs. Only BuV3 was found, which was genetically and phylogenetically similar to Bhutanese BuV3, indicating that BuV3 is prevalent in Asian countries.
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- 2015
38. Diagnostic methods for and clinical pictures of polyomavirus primary infections in children, Finland
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Riitta Veijola, Mohammadreza Sadeghi, Ville Simell, Heikki Hyöty, Maria Söderlund-Venermo, Olli Simell, Jorma Toppari, Marjaana Mäkinen, Tingting Chen, Laura Tanner, Klaus Hedman, Jorma Ilonen, Mikael Knip, Lea Hedman, Department of Virology, Haartman Institute (-2014), Clinicum, Children's Hospital, Lastentautien yksikkö, HUS Children and Adolescents, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
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Tumor Virus Infections ,Epidemiology ,viruses ,lcsh:Medicine ,Merkel cell polyomavirus ,3123 Gynaecology and paediatrics ,Prospective Studies ,Prospective cohort study ,Child ,Finland ,biology ,Dispatch ,virus diseases ,serodiagnostics ,3. Good health ,Infectious Diseases ,primary infection ,SPINULOSA-ASSOCIATED POLYOMAVIRUS ,Antibody ,medicine.symptom ,Polyomavirus ,Microbiology (medical) ,Adolescent ,education ,Immunoglobulins ,Asymptomatic ,TRICHODYSPLASIA SPINULOSA ,lcsh:Infectious and parasitic diseases ,medicine ,Humans ,trichodysplasia spinulosa-associated polyomavirus ,lcsh:RC109-216 ,Seroconversion ,Retrospective Studies ,childhood ,Polyomavirus Infections ,PERSISTENCE ,lcsh:R ,Infant, Newborn ,Infant ,ADULTS ,biology.organism_classification ,Trichodysplasia ,Virology ,DNA-SEQUENCES ,Immunology ,biology.protein ,3111 Biomedicine - Abstract
We used comprehensive serodiagnostic methods (IgM, IgG, and IgG avidity) and PCR to study Merkel cell polyomavirus and trichodysplasia spinulosa-associated polyomavirus infections in children observed from infancy to adolescence. Comparing seroconversion intervals with previous and subsequent intervals, we found that primary infections with these 2 viruses were asymptomatic in childhood.
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- 2014
39. Merkel cell polyomavirus and trichodysplasia spinulosa-associated polyomavirus DNAs and antibodies in blood among the elderly
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Tuomas Jartti, Tingting Chen, Olli Ruuskanen, Laura Jartti, Matti Aronen, Mohammadreza Sadeghi, Klaus Hedman, Maria Söderlund-Venermo, Department of Virology, Haartman Institute (-2014), Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
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Male ,Serum ,medicine.medical_specialty ,MCPyV ,medicine.medical_treatment ,Population ,education ,Merkel cell polyomavirus ,Biology ,Antibodies, Viral ,lcsh:Infectious and parasitic diseases ,Serology ,03 medical and health sciences ,0302 clinical medicine ,Medical microbiology ,Elderly ,medicine ,Humans ,lcsh:RC109-216 ,030304 developmental biology ,Aged ,Aged, 80 and over ,0303 health sciences ,education.field_of_study ,Merkel cell carcinoma ,Immunosuppression ,medicine.disease ,biology.organism_classification ,Virology ,Trichodysplasia ,humanities ,3. Good health ,TSPyV ,Infectious Diseases ,PCR ,030220 oncology & carcinogenesis ,Immunology ,DNA, Viral ,biology.protein ,Female ,3111 Biomedicine ,Antibody ,Research Article - Abstract
Background Merkel cell polyomavirus (MCPyV) and trichodysplasia spinulosa-associated polyomavirus (TSPyV) are recently found pathogens causing two rare skin disorders, Merkel cell carcinoma (MCC) and trichodysplasia spinulosa (TS). MCC is proportionally common in the elderly and most often is associated with immunosuppression. TS is a folliculocentric infection seen in patients in an immunocompromised state. Little or no baseline information exists, however, on the prevalences of these two viruses among the elderly. Epidemiologic data on this population could help in understanding their natural biology. We wished to determine the occurrences and blood levels of MCPyV and TSPyV DNAs among the elderly and any association between the prevalences of their corresponding antiviral IgG antibodies. Methods From 394 hospitalized elderly individuals (age ≥65 years) with respiratory symptoms, cardiovascular, and other diseases, we studied 621 serum samples by four different real-time quantitative (q) PCRs, two for the DNAs of MCPyV and two for TSPyV. The IgG antibodies for both viruses among 481 serum samples of 326 subjects were measured with enzyme immunoassays (EIAs), using as antigen recombinant virus-like particles (VLPs). Results Of the 394 patients, 39 (9.9%) were positive at least once for MCPyV DNA by the LT PCR, and 33 (8.4%) by the VP1 PCR, while 6 (1.5%) were positive by both PCR assays. In general, the viral DNA copy numbers were low. In sharp contrast, no TSPyV DNA was detectable with qPCRs for the corresponding genomic regions. The IgG seroprevalence of MCPyV was 59.6% and of TSPyV, 67.3%. Conclusions MCPyV DNA, unlike TSPyV DNA, occurs in low copy number in serum samples from a notable proportion of aging individuals. Whether this reflects enhanced viral replication possibly due to waning immune surveillance, and is associated with increased MCC risk, deserves exploration.
- Published
- 2012
40. Biotin IgM Antibodies in Human Blood: A Previously Unknown Factor Eliciting False Results in Biotinylation-Based Immunoassays
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Lea Hedman, Olli Ruuskanen, Tuomas Jartti, Petri S. Mattila, Klaus Hedman, Tingting Chen, Laura Jartti, Maria Söderlund-Venermo, Department of Virology, Haartman Institute (-2014), Clinicum, Korva-, nenä- ja kurkkutautien klinikka, Infection Biology Research Program, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
- Subjects
EGG-WHITE POWDER ,Life Sciences & Biomedicine - Other Topics ,Antibody Affinity ,lcsh:Medicine ,Autoimmunity ,Immunoglobulin G ,Cohort Studies ,Immunoenzyme Techniques ,chemistry.chemical_compound ,0302 clinical medicine ,Biotin ,Seroepidemiologic Studies ,BINDING ,lcsh:Science ,Child ,Immune Response ,Aged, 80 and over ,0303 health sciences ,education.field_of_study ,Multidisciplinary ,3. Good health ,DEFICIENCY ,Biochemistry ,030220 oncology & carcinogenesis ,Biotinylation ,Medicine ,Antibody ,Research Article ,Protein Binding ,Adult ,Streptavidin ,QUANTITATION ,Clinical Research Design ,Immunology ,Blotting, Western ,Population ,education ,Immunoglobulins ,Biology ,Microbiology ,Binding, Competitive ,Inhibitory Concentration 50 ,03 medical and health sciences ,RHEUMATOID-FACTOR ,Antigen ,Virology ,Viruslike Particles ,Humans ,False Positive Reactions ,Antigens ,Immunoassays ,Aged ,030304 developmental biology ,LINKED-IMMUNOSORBENT-ASSAY ,B-CELL REPERTOIRE ,lcsh:R ,Molecular biology ,MONOREACTIVE HIGH-AFFINITY ,Viral Disease Diagnosis ,SERA ,Immunoglobulin M ,chemistry ,Immunologic Techniques ,biology.protein ,IMMUNOGLOBULIN-G ,lcsh:Q ,Clinical Immunology ,AUTOANTIBODIES ,3111 Biomedicine ,Avidin - Abstract
Biotin is an essential vitamin that binds streptavidin or avidin with high affinity and specificity. As biotin is a small molecule that can be linked to proteins without affecting their biological activity, biotinylation is applied widely in biochemical assays. In our laboratory, IgM enzyme immuno assays (EIAs) of µ-capture format have been set up against many viruses, using as antigen biotinylated virus like particles (VLPs) detected by horseradish peroxidase-conjugated streptavidin. We recently encountered one serum sample reacting with the biotinylated VLP but not with the unbiotinylated one, suggesting in human sera the occurrence of biotin-reactive antibodies. In the present study, we search the general population (612 serum samples from adults and 678 from children) for IgM antibodies reactive with biotin and develop an indirect EIA for quantification of their levels and assessment of their seroprevalence. These IgM antibodies were present in 3% adults regardless of age, but were rarely found in children. The adverse effects of the biotin IgM on biotinylation-based immunoassays were assessed, including four inhouse and one commercial virus IgM EIAs, showing that biotin IgM do cause false positivities. The biotin can not bind IgM and streptavidin or avidin simultaneously, suggesting that these biotin-interactive compounds compete for the common binding site. In competitive inhibition assays, the affinities of biotin IgM antibodies ranged from 2.1 × 10(-3) to 1.7 × 10(-4 )mol/L. This is the first report on biotin antibodies found in humans, providing new information on biotinylation-based immunoassays as well as new insights into the biomedical effects of vitamins.
- Published
- 2012
41. T-helper Cell-Mediated Proliferation and Cytokine Responses against Recombinant Merkel Cell Polyomavirus-Like Particles
- Author
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Rauli Franssila, Arun Kumar, Tingting Chen, Klaus Hedman, Anu Kantele, Maria Söderlund-Venermo, Sari H. Pakkanen, Department of Virology, Department of Bacteriology and Immunology, Department of Medicine, Infektiosairauksien yksikkö, Haartman Institute (-2014), Anu Kantele-Häkkinen Research Group, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
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Cellular immunity ,Viral Diseases ,Anatomy and Physiology ,Merkel cell polyomavirus ,lcsh:Medicine ,0302 clinical medicine ,Antibody Specificity ,HLA Antigens ,Human bocavirus ,Immune Physiology ,Candida albicans ,Cytotoxic T cell ,IMMUNE-RESPONSE ,lcsh:Science ,Antigens, Viral ,Immune Response ,Recombination, Genetic ,0303 health sciences ,Multidisciplinary ,Interleukin-13 ,IFN-GAMMA ,biology ,T Cells ,Cancer Risk Factors ,TUMOR-GROWTH ,Antibodies, Monoclonal ,T helper cell ,T-Lymphocytes, Helper-Inducer ,Middle Aged ,CANCER ,3. Good health ,medicine.anatomical_structure ,Infectious Diseases ,Oncology ,030220 oncology & carcinogenesis ,B-CELLS ,Cytokines ,Medicine ,Antibody ,Research Article ,Adult ,CARCINOMA ,Immune Cells ,Immunology ,Viral and Bacterial Causes of Cancer ,Microbiology ,03 medical and health sciences ,Immune system ,Antigen ,Virology ,medicine ,Humans ,Biology ,030304 developmental biology ,Cell Proliferation ,INTERFERON-GAMMA ,CHRONIC LYMPHOCYTIC-LEUKEMIA ,lcsh:R ,Virion ,biology.organism_classification ,INTERLEUKIN-10 ,Viruses and Cancer ,3121 General medicine, internal medicine and other clinical medicine ,Humoral immunity ,ANTIBODIES ,biology.protein ,lcsh:Q ,Clinical Immunology ,3111 Biomedicine - Abstract
The newly discovered Merkel Cell Polyomavirus (MCPyV) resides in approximately 80% of Merkel cell carcinomas (MCC). Causal role of MCPyV for this rare and aggressive skin cancer is suggested by monoclonal integration and truncation of large T (LT) viral antigen in MCC cells. The mutated MCPyV has recently been found in highly purified leukemic cells from patients with chronic lymphocytic leukemia (CLL), suggesting a pathogenic role also in CLL. About 50–80% of adults display MCPyVspecific antibodies. The humoral immunity does not protect against the development of MCC, as neutralizing MCPyV antibodies occur in higher levels among MCC patients than healthy controls. Impaired T-cell immunity has been linked with aggressive MCC behavior. Therefore, cellular immunity appears to be important in MCPyV infection surveillance. In order to elucidate the role of MCPyV-specific Th-cell immunity, peripheral blood mononuclear cells (PBMC) of healthy adults were stimulated with MCPyV VP1 virus-like particles (VLPs), using human bocavirus (HBoV) VLPs and Candida albicans antigen as positive controls. Proliferation, IFN-c, IL-13 and IL-10 responses were examined in 15 MCPyV-seropositive and 15 seronegative volunteers. With the MCPyV antigen, significantly stronger Th-cell responses were found in MCPyVseropositive than MCPyV-seronegative subjects, whereas with the control antigens, the responses were statistically similar. The most readily detectable cytokine was IFN-c. The MCPyV antigen tended to induce stronger IFN-c responses than HBoV VLP antigen. Taken together, MCPyV-specific Th-cells elicit vigorous IFN-c responses. IFN-c being a cytokine with major antiviral and tumor suppressing functions, Th-cells are suggested to be important mediators of MCPyV-specific immune surveillance.
- Published
- 2011
42. Anticancer compound ABT-263 accelerates apoptosis in virus-infected cells and imbalances cytokine production and lowers survival rates of infected mice
- Author
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Tero Aittokallio, R. C. Matos, Johanna Viiliäinen, Tine Ysenbaert, K. Dzeyk, Janne Tynell, Jakob Stenman, Ashwini S. Nagaraj, Bhagwan Yadav, Emmy W. Verschuren, Olli Vapalahti, Tuula A. Nyman, Denis E. Kainov, Oxana V. Denisova, Tiina Öhman, Henrik Paavilainen, Xavier Saelens, Veijo Hukkanen, Päivi M. Ojala, Laura Kakkola, Suvi Kuivanen, Lin Feng, Ilkka Julkunen, Institute for Molecular Medicine Finland, Institute of Biotechnology, Haartman Institute (-2014), Department of Virology, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, Bioinformatics, Viral Zoonosis Research Unit, and Lung Cancer Model Systems
- Subjects
Cancer Research ,medicine.medical_treatment ,PROTEIN ,BCL-X-L ,Mice ,0302 clinical medicine ,Neoplasms ,SALIPHENYLHALAMIDE ,innate immunity ,Sulfonamides ,0303 health sciences ,Aniline Compounds ,biology ,INDUCTION ,DEATH ,apoptosis ,Pattern recognition receptor ,EPITHELIAL-CELLS ,3. Good health ,Cytokine ,INFLUENZA ,Influenza A virus ,030220 oncology & carcinogenesis ,Original Article ,Programmed cell death ,education ,Immunology ,Antineoplastic Agents ,Bcl-xL ,virus ,ta3111 ,Virus ,HUMAN PLATELETS ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Immune system ,Orthomyxoviridae Infections ,Cell Line, Tumor ,medicine ,Animals ,030304 developmental biology ,Innate immune system ,POTENT ,Macrophages ,ta1182 ,Cell Biology ,Virology ,infection ,cytokines ,Disease Models, Animal ,Apoptosis ,REPLICATION ,biology.protein ,3111 Biomedicine - Abstract
ABT-263 and its structural analogues ABT-199 and ABT-737 inhibit B-cell lymphoma 2 (Bcl-2), BCL2L1 long isoform (Bcl-xL) and BCL2L2 (Bcl-w) proteins and promote cancer cell death. Here, we show that at non-cytotoxic concentrations, these small molecules accelerate the deaths of non-cancerous cells infected with influenza A virus (IAV) or other viruses. In particular, we demonstrate that ABT-263 altered Bcl-xL interactions with Bcl-2 antagonist of cell death (Bad), Bcl-2-associated X protein (Bax), uveal autoantigen with coiled-coil domains and ankyrin repeats protein (UACA). ABT-263 thereby activated the caspase-9-mediated mitochondria-initiated apoptosis pathway, which, together with the IAV-initiated caspase-8-mediated apoptosis pathway, triggered the deaths of IAV-infected cells. Our results also indicate that Bcl-xL, Bcl-2 and Bcl-w interact with pattern recognition receptors (PRRs) that sense virus constituents to regulate cellular apoptosis. Importantly, premature killing of IAV-infected cells by ABT-263 attenuated the production of key pro-inflammatory and antiviral cytokines. The imbalance in cytokine production was also observed in ABT-263-treated IAV-infected mice, which resulted in an inability of the immune system to clear the virus and eventually lowered the survival rates of infected animals. Thus, the results suggest that the chemical inhibition of Bcl-xL, Bcl-2 and Bcl-w could potentially be hazardous for cancer patients with viral infections.
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- 2013
- Full Text
- View/download PDF
43. Newly discovered KI, WU, and Merkel cell polyomaviruses: No evidence of mother-to-fetus transmission
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Riitta Karikoski, Heljä-Marja Surcel, Klaus Hedman, Tingting Chen, Helena Taskinen, Kalle Kantola, Maria Söderlund-Venermo, Mohammadreza Sadeghi, Anita Riipinen, Elina Väisänen, Department of Virology, Department of Pathology, Department of Public Health, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
- Subjects
Merkel cell polyomavirus ,medicine.disease_cause ,Antibodies, Viral ,Polymerase Chain Reaction ,0302 clinical medicine ,Pregnancy ,311 Basic medicine ,Pregnancy Complications, Infectious ,0303 health sciences ,biology ,Merkel cell carcinoma ,ASSOCIATION ,Middle Aged ,3. Good health ,BK virus ,Infectious Diseases ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Female ,Antibody ,Polyomavirus ,Adult ,YOUNG-CHILDREN ,CARCINOMA ,Transplacental transmission ,Adolescent ,education ,RESPIRATORY-TRACT ,TRANSPLACENTAL TRANSMISSION ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,Young Adult ,Fetus ,Virology ,Placenta ,medicine ,Humans ,lcsh:RC109-216 ,030304 developmental biology ,Polyomavirus Infections ,IDENTIFICATION ,HUMAN INFECTION ,BK VIRUS ,Research ,DNA ,ADULTS ,medicine.disease ,biology.organism_classification ,Infectious Disease Transmission, Vertical ,Tumor Virus Infections ,Immunology ,DNA, Viral ,biology.protein - Abstract
Background Three* human polyomaviruses have been discovered recently, KIPyV, WUPyV and MCPyV. These viruses appear to circulate ubiquitously; however, their clinical significance beyond Merkel cell carcinoma is almost completely unknown. In particular, nothing is known about their preponderance in vertical transmission. The aim of this study was to investigate the frequency of fetal infections by these viruses. We sought the three by PCR, and MCPyV also by real-time quantitative PCR (qPCR), from 535 fetal autopsy samples (heart, liver, placenta) from intrauterine fetal deaths (IUFDs) (N = 169), miscarriages (120) or induced abortions (246). We also measured the MCPyV IgG antibodies in the corresponding maternal sera (N = 462) mostly from the first trimester. Results No sample showed KIPyV or WUPyV DNA. Interestingly, one placenta was reproducibly PCR positive for MCPyV. Among the 462 corresponding pregnant women, 212 (45.9%) were MCPyV IgG seropositive. Conclusions Our data suggest that none of the three emerging polyomaviruses often cause miscarriages or IUFDs, nor are they transmitted to fetuses. Yet, more than half the expectant mothers were susceptible to infection by the MCPyV.
- Published
- 2010
44. Erythroid Progenitor Cells Expanded from Peripheral Blood without Mobilization or Preselection: Molecular Characteristics and Functional Competence
- Author
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Rauli Franssila, Klaus Hedman, Claudia Filippone, Arun Kumar, Panu E. Kovanen, Leena Saikko, Maria Söderlund-Venermo, Department of Virology, Department of Pathology, Human Parvoviruses: Epidemiology, Molecular Biology and Clinical Impact, and Virus infections and immunity
- Subjects
CD36 Antigens ,Myeloid ,Lymphocyte ,Cell Culture Techniques ,lcsh:Medicine ,Antigens, CD34 ,FETAL LIVER ,Polymerase Chain Reaction ,Parvovirus ,0302 clinical medicine ,311 Basic medicine ,Glycophorins ,lcsh:Science ,Virology/Effects of Virus Infection on Host Gene Expression ,Erythroid Precursor Cells ,HUMAN-BONE-MARROW ,0303 health sciences ,Multidisciplinary ,Stem Cells ,PRODUCTIVE INFECTION ,Hematology ,Flow Cytometry ,Hematopoietic Stem Cell Mobilization ,3. Good health ,DIFFERENTIATION ,medicine.anatomical_structure ,Genetic Techniques ,030220 oncology & carcinogenesis ,cardiovascular system ,Stem cell ,Research Article ,circulatory and respiratory physiology ,ANTIGEN-EXPRESSION ,HUMAN PARVOVIRUS B19 ,Hematology/Hematopoiesis ,education ,Biology ,CANDIDATE RECOMBINANT VACCINE ,Peripheral blood mononuclear cell ,03 medical and health sciences ,Antigens, CD ,Virology ,Receptors, Transferrin ,medicine ,Humans ,HEMATOPOIETIC STEM-CELLS ,030304 developmental biology ,LIQUID CULTURE ,Monocyte ,lcsh:R ,IN-VITRO ,Cell Biology ,Stem Cell Research ,Molecular biology ,Cell culture ,lcsh:Q - Abstract
BACKGROUND: Continued development of in-vitro procedures for expansion and differentiation of erythroid progenitor cells (EPC) is essential not only in hematology and stem cell research but also virology, in light of the strict erythrotropism of the clinically important human parvovirus B19. METHODOLOGY/PRINCIPAL FINDINGS: We cultured EPC directly from ordinary blood samples, without ex vivo stem cell mobilization or CD34+ cell in vitro preselection. Profound increase in the absolute cell number and clustering activity were observed during culture. The cells obtained expressed the EPC marker combination CD36, CD71 and glycophorin, but none of the lymphocyte, monocyte or NK markers. The functionality of the generated EPC was examined by an in vitro infection assay with human parvovirus B19, tropic for BFU-E and CFU-E cells. Following infection (i) viral DNA replication and mRNA production were confirmed by quantitative PCR, and (ii) structural and nonstructural proteins were expressed in >50% of the cells. As the overall cell number increased 100-200 fold, and the proportion of competent EPC (CD34+ to CD36+) rose from 50%, the in vitro culture procedure generated the EPC at an efficiency of >10,000-fold. Comparative culturing of unselected PBMC and ex vivo-preselected CD34+ cells produced qualitatively and quantitatively similar yields of EPC. CONCLUSIONS/SIGNIFICANCE: This approach yielding EPC directly from unmanipulated peripheral blood is gratifyingly robust and will facilitate the study of myeloid infectious agents such as the B19 virus, as well as the examination of erythropoiesis and its cellular and molecular mechanisms.
- Published
- 2010
- Full Text
- View/download PDF
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