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Water stress is a critical factor limiting the growth and development of Capsicum annuum. Flavonoids and lignin are important secondary metabolites that serve as signaling molecules in plant stress responses. However, the effects and regulatory mechanisms of lignin and flavonoids under water stress in Capsicum annuum remain unknown. The present study focused on the effects of drought and waterlogging stress on the morphology, hydrogen peroxide, and relative chlorophyll (SPAD), as well as enzyme activities, metabolite contents, and gene expression related to lignin and flavonoid metabolic pathways in Capsicum annuum. The results showed that drought and waterlogging stresses on the Capsicum annuum variety ‘Shuyu2’ significantly reduced plant height, stem thickness, and single-fruit weight, and increased fruit shape coefficients. Drought stress increased H2O2 and SPAD content, enhanced the activity levels of metabolic enzymes (phenylalanine deaminase, cinnamate 4-hydroxylase, coenzyme A ligase, peroxidase, and polyphenol oxidase), and up-regulated the expression of related genes, phenylalanine deaminase (PAL), trans-cinnamate monooxygenase (C4H), chalcone isomerase (CHI), and mangiferyl hydroxycinnamoyltransferase (HCT), while also promoting the accumulation of metabolites (total phenolics, flavonoids, and lignin) that have a restorative effect on drought stress. The continuous accumulation of H2O2 and the increase and then decrease in SPAD under waterlogging stress was also observed. Waterlogging stress also enhanced the activities of the above-mentioned metabolic enzymes, but the related genes were selectively down-regulated, e.g., C4H, 4CL, and peroxidase (POD), which resulted in the inhibition of the synthesis of lignin, flavonoids, and total phenols. These results indicate that the Capsicum annuum variety ‘Shuyu2’ is a drought-tolerant, waterlogging-sensitive variety. Meanwhile, the lignin and flavonoid pathway is a key pathway in response to drought stress in Capsicum annuum, which improves the theory of stress tolerance breeding in Capsicum annuum.

Abstract A sustainable future depends on increasing agricultural carbon (C) and nitrogen (N) sequestration. Winter rapeseeds are facing severe yield loss after waterlogging due to the effects of extreme rainfall, especially in the seedling stage, where rainfall is most sensitive. Uncertainty exists over the farming greenhouse gas (GHG) release of rapeseed seedlings following the onset of waterlogging. The effect of waterlogging on GHG release and leaf gas exchange in winter rapeseed was examined in a pot experiment. The experiment included waterlogging treatments lasting 7-day and 21-day and normal irrigation as a control treatment. According to our findings, (1) The ecosystem of rapeseed seedlings released methane (CH4) and nitrous oxide (N2O) in a clear up change that was impacted by ongoing waterlogging. Among them, N2O release had a transient rise during the early stages under the effect of seedling fertilizer. (2) The net photosynthetic rate, transpiration rate, stomatal conductance, plant height, soil moisture, and soil oxidation–reduction potential of rapeseed all significantly decreased due to the ongoing waterlogging. However, rapeseed leaves showed a significant increase in intercellular carbon dioxide (CO2) concentration and leaf chlorophyll content values after waterlogging. Additionally, the findings demonstrated an extremely significant increase in the sustained-flux global warming potential of the sum CO2-eq of CH4 and N2O throughout the entire waterlogging stress period. Therefore, continuous waterlogging can increase C and N release from rapeseed seedlings ecosystem and decrease yield. Therefore, we suggest increasing drainage techniques to decrease the release of agricultural GHGs and promote sustainable crop production.

Abstract As a enrichment plant, ramie can be used for the phytoremediation of cadmium (Cd)-contaminated soil. However, it is worth exploring the role of plant growth regulators and foliar fertilizers in the process of plant growth and development and Cd adsorption. By measuring the agronomic traits, Cd content of aboveground and underground ramie, calculating the Cd transfer coefficient (TF) and Cd bioconcentration factors (BCF), and the correlation between various indicators. This study examined the effects of plant growth regulators and foliar fertilizers on ramie’s capacity for Cd accumulation and transportation. Plant growth regulators and foliar fertilizers increased the Cd content of the aboveground ramie, reduced the Cd content of the underground ramie, and increased the TF. Among them, GA-1 increased the Cd content of the aboveground ramie to 3 times more than that of the control and reduced the Cd content of the underground ramie by 54.76%. Salicylic acid (SA) increased the Cd content of the aboveground ramie to three times more than that of the control. The combination of GA and foliar fertilizer reduced the Cd content of the aboveground and underground ramie and the TF and BCF of the underground ramie. After the hormones were sprayed, the TF of ramie had a significant positive correlation with the Cd content of the aboveground ramie; the BCF of the aboveground ramie had a significant positive correlation with the Cd content and TF of the aboveground ramie. The results indicate that Brassinolide (BR), gibberellin (GA), ethephon (ETH), polyamines (PAs), and salicylic acid (SA) have different effects on the enrichment and transport of Cd in ramie. This study provided an effective method to improve the capacity for ramie to adsorb heavy metals during cultivation.

IntroductionThe APETALA2/ethylene response factor (AP2/ERF) superfamily plays a significant role in regulating plant gene expression in response to growth and development. To date, there have been no studies into whether the ramie AP2/ERF genes are involved in the regulation of flower development.MethodsHere, 84 BnAP2/ERF members were identified from the ramie genome database, and various bioinformatics data on the AP2/ERF gene family, structure, replication, promoters and regulatory networks were analysed. BnAP2-12 was transferred into Arabidopsis through the flower-dipping method.ResultsPhylogenetic analysis classified the 84 BnAP2/ERF members into four subfamilies: AP2 (18), RAV (3), ERF (42), and DREB (21). The functional domain analysis of genes revealed 10 conserved motifs. Genetic mapping localised the 84 members on 14 chromosomes, among which chromosomes 1, 3, 5, and 8 had more members. Collinearity analysis revealed that 43.37% possibly resulted from replication events during the evolution of the ramie genome. Promoter sequence analysis identified classified cis-acting elements associated with plant growth and development, and responses to stress, hormones, and light. Transcriptomic comparison identified 3,635 differentially expressed genes (DEGs) between male and female flowers (1,803 and 1,832 upregulated and downregulated genes, respectively). Kyoto Encyclopaedia of Genes and Genomes pathway analysis categorised DEGs involved in metabolic pathways and biosynthesis of secondary metabolites. Gene Ontology enrichment analysis further identified enriched genes associated with pollen and female gamete formations. Of the 84 BnAP2/ERFs genes, 22 and 8 upregulated and downregulated genes, respectively, were present in female flowers. Co-expression network analysis identified AP2/ERF members associated with flower development, including BnAP2-12. Subcellular localisation analysis showed that the BnAP2-12 protein is localised in the nucleus and cell membrane. Overexpression BnAP2-12 delayed the flowering time of Arabidopsis thaliana.ConclusionThese findings provide insights into the mechanism of ramie flower development.

The optimal combination of the nitrogen fertilizer application and planting density with reference to the silage maize yield and quality remains unclear. We hypothesized that increasing both would increase yields following the law of diminishing returns. Yayu26, a silage maize cultivar, was used in a split-plot experiment to investigate the effects of nitrogen fertilizer and planting density on growth, nutrient characteristics, and chlorophyll fluorescence. The main plots were assigned to three planting densities: 60,000 (A1), 75,000 (A2), and 90,000 (A3) plants hm−2, and the subplots were assigned to four nitrogen fertilizer rates: 0 (B1), 120 (B2), 240 (B3), and 360 (B4) kg hm−2. The results showed that increasing the nitrogen application rate and planting density both enhanced silage maize yield. Nitrogen accumulation and agronomic use efficiency peaked at a planting density of 75,000 hm−2. Structural equation modeling showed that the nitrogen application rate and planting density affected nitrogen accumulation and nutrient properties by influencing chlorophyll fluorescence parameters and nitrogen agronomic efficiency, ultimately resulting in a positive effect on the yield. The A3 × B2 treatments exhibited higher nitrogen accumulation, potentially compensating for any deficiencies in the dry-matter yield. Therefore, the A3 × B2 treatment was evaluated as the optimal treatment to achieve sustainable and economically feasible silage maize production.

Introduction: Transcription factors (TFs) and cis-regulatory elements (CREs) control gene transcripts involved in various biological processes. We hypothesize that TFs and CREs can be effective molecular tools for De Novo regulation designs to engineer plants. Objectives: We selected two Arabidopsis TF types and two tobacco CRE types to design a De Novo regulation and evaluated its effectiveness in plant engineering. Methods: G-box and MYB recognition elements (MREs) were identified in four Nicotiana tabacum JAZs (NtJAZs) promoters. MRE-like and G-box like elements were identified in one nicotine pathway gene promoter. TF screening led to select Arabidopsis Production of Anthocyanin Pigment 1 (PAP1/MYB) and Transparent Testa 8 (TT8/bHLH). Two NtJAZ and two nicotine pathway gene promoters were cloned from commercial Narrow Leaf Madole (NL) and KY171 (KY) tobacco cultivars. Electrophoretic mobility shift assay (EMSA), cross-linked chromatin immunoprecipitation (ChIP), and dual-luciferase assays were performed to test the promoter binding and activation by PAP1 (P), TT8 (T), PAP1/TT8 together, and the PAP1/TT8/Transparent Testa Glabra 1 (TTG1) complex. A DNA cassette was designed and then synthesized for stacking and expressing PAP1 and TT8 together. Three years of field trials were performed by following industrial and GMO protocols. Gene expression and metabolic profiling were completed to characterize plant secondary metabolism. Results: PAP1, TT8, PAP1/TT8, and the PAP1/TT8/TTG1 complex bound to and activated NtJAZ promoters but did not bind to nicotine pathway gene promoters. The engineered red P + T plants significantly upregulated four NtJAZs but downregulated the tobacco alkaloid biosynthesis. Field trials showed significant reduction of five tobacco alkaloids and four carcinogenic tobacco specific nitrosamines in most or all cured leaves of engineered P + T and PAP1 genotypes. Conclusion: G-boxes, MREs, and two TF types are appropriate molecular tools for a De Novo regulation design to create a novel distant-pathway cross regulation for altering plant secondary metabolism.

Cadmium (Cd) is a non-essential, highly phytotoxic metal and damages ramie plant growth and development even at low concentrations. Ramie is one of the most significant crops in China, with excellent fiber quality and immense industrial importance. Planting Cd-tolerant ramie cultivars can prevent yield loss on contaminated soil. Previously, significant efforts have been made to develop Cd tolerance in ramie. However, the Cd tolerance mechanism is still not fully understood; hence, breeding industrial crops is critical to tackling the ongoing challenges. Cd tolerance is a complex genetic mechanism requiring high-level molecular studies to clarify the genes network. Genetic studies have identified several Cd-tolerant genes in ramie, which led to the development of several ramie cultivars suitable to grow on toxic soils; however, due to the continuous rise in Cd toxicity, potent molecular tools are critical in modern-day breeding programs. Genetic engineering, and transcriptome analysis have been used to develop abiotic stress tolerance in ramie, but QTL mapping and clustered regularly interspaced short palindromic repeats (CRISPR) are rarely studied. However, studies are still limited in addressing this issue. This review critically elaborated on using QTL mapping, transcriptomes, transcription factors, CRISPR/Cas9, and genetic engineering to enhance Cd tolerance in ramie. These genes/QTL should be transferred or edited into sensitive cultivars using genetic engineering or CRISPR/Cas9. CRISPR/Cas9 is highly recommended because it provides targeted gene editing in ramie, its use is limited and can address the research gaps, and it would revolutionize the field of agriculture. Limitations, gaps, and future potential are briefly discussed. This review paper presents new clues to help future researchers comprehensively understand Cd tolerance in ramie and develop tolerant cultivars for industrial purposes.

As a most significant cereal crop, maize provides vital nutritional components to humans and livestock. Drought stress curtails maize growth and yield by impairing several morphological, physiological, and biochemical functions. The rising threats of drought stress significantly affect global food security and increase the ratio of hunger and starvation. The use of molecular breeding techniques has enabled maize researchers to deeply examine the genetic control of drought tolerance and the genetic differences between genotypes to drought stress. Despite the significant progress in molecular genetics, the drought tolerance mechanism is still not fully understood. With the advancements in molecular research, researchers have identified several molecular factors associated with maize tolerance to drought stress. Quantitative trait loci (QTL) mapping and genome-wide association study (GWAS) analysis have led to identifying QTL, and genes linked to drought tolerance in maize that can be further exploited for their possible breeding applications. Transcriptome and transcription factors (TFs) analysis has revealed the documentation of potential genes and protein groups that might be linked to drought tolerance and accelerate the drought breeding program. Genetic engineering has been used to develop transgenic maize cultivars that are resistant to drought stress. Clustered regularly interspaced short palindromic repeats (CRISPR/Cas9) is a new ray of hope to edit the gene of interest to enhance drought tolerance in maize and save both time and cost in cultivar development. In the current review article, we have tried to present an updated picture of the advancements of drought tolerance in maize and its future prospects. These organized pieces of information can assist future researchers in understanding the basis of drought tolerance to adopt a potential breeding tool for breeding drought-tolerant maize cultivars.

Abiotic stresses are one of the significant threats to soybean (Glycine max L.) growth and yields worldwide. Soybean has a crucial role in the global food supply chain and food security and contributes the main protein share compared to other crops. Hence, there is a vast scientific saddle on soybean researchers to develop tolerant genotypes to meet the growing need of food for the huge population. A large portion of cultivated land is damaged by salinity stress, and the situation worsens yearly. In past years, many attempts have increased soybean resilience to salinity stress. Different molecular techniques such as quantitative trait loci mapping (QTL), genetic engineering, transcriptome, transcription factor analysis (TFs), CRISPR/Cas9, as well as other conventional methods are used for the breeding of salt-tolerant cultivars of soybean to safeguard its yield under changing environments. These powerful genetic tools ensure sustainable soybean yields, preserving genetic variability for future use. Only a few reports about a detailed overview of soybean salinity tolerance have been published. Therefore, this review focuses on a detailed overview of several molecular techniques for soybean salinity tolerance and draws a future research direction. Thus, the updated review will provide complete guidelines for researchers working on the genetic mechanism of salinity tolerance in soybean.

Ramie cell walls play an important role in cadmium (Cd) detoxification. However, the Cd binding capacity of the cell wall components and the cell wall compositions among ramie species remains unclear. Therefore, this study compared two ramie populations (‘Dazhuhuangbaima’ (low-Cd-accumulating population) and ‘Zhongzhu 1’ (high-Cd-accumulating population)) with different Cd enrichment characteristics. The two ramie populations were treated with 0, 25, and 75 mg kg−1 Cd for 30 days; then, their root length, plant height, biomass, Cd enrichment in the organs, subcellular Cd distribution, Cd content in the cell wall polysaccharides, and hemicellulose content were determined. The root length, plant height, biomass, and Cd enrichment in all organs were significantly higher (p ≤ 0.05) in ‘Zhongzhu 1’ than in ‘Dazhuhuangbaima’ under Cd stress. In addition, the subcellular Cd distribution analysis revealed that Cd was mainly found in the cell wall in both ramie populations. Among the cell wall fractions, Cd was mainly bound to the hemicelluloses, with 60.38–73.10% and 50.05–64.45% Cd accumulating in the ‘Zhongzhu 1’ and ‘Dazhuhuangbaima’ cell wall hemicelluloses, respectively. However, the Cd concentration in the ‘Zhongzhu 1’ hemicellulose was significantly higher (p ≤ 0.05) than that in the ‘Dazhuhuangbaima’ hemicellulose. Hemicellulose content analysis further revealed that the hemicellulose concentration increased with the Cd concentration in both populations, but it was significantly higher (p ≤ 0.05) in ‘Zhongzhu 1’ than in ‘Dazhuhuangbaima’ across all Cd treatments. Thus, ramie copes under Cd stress by increasing the hemicellulose content in the cell wall. The findings in this study confirm that hemicellulose is the main enrichment site for Cd in ramie. It also provides a theoretical basis for Cd enrichment breeding in ramie.

The breeding for varieties tolerant of adverse growing conditions is critical for sustainable agriculture, especially for ramie (Boehmeria nivea L.). However, a lack of information on the tolerance of ramie to nutrient-deficient conditions has hindered efforts to breed ramie varieties tolerant of such conditions. The main objective of this study was to explore the tolerance strategies of ramie plants under poor soil conditions using long-term (8–9 years) field trials. Genotypes of Duobeiti 1 and Xiangzhu XB were highly tolerant of poor soil conditions. The contributions of seasonal nutrient cycling and rhizobacteria to the ability of ramie to tolerate poor soil were tested. Nitrogen and phosphorus retranslocation to the root at the end of the growing season helped ramie adapt to poor soil conditions. The contribution of the microbial community was analyzed using high-throughput Illumina MiSeq sequencing technology. The enrichment of beneficial bacteria (mainly Bradyrhizobium, Gaiella, and norank_o_Gaiellales) and the reduction of harmful fungi (mainly Cladosporium and Aspergillus) also contributed to the ability of ramie to tolerate poor soils. The results of this study provide new insight into the ability of ramie to tolerate adverse conditions and aid future efforts to breed and cultivate ramie tolerant of adverse conditions.