404 results on '"Hsin-Yu Chen"'
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2. Theoretical and experimental constraints for the equation of state of dense and hot matter
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Rajesh Kumar, Veronica Dexheimer, Johannes Jahan, Jorge Noronha, Jacquelyn Noronha-Hostler, Claudia Ratti, Nico Yunes, Angel Rodrigo Nava Acuna, Mark Alford, Mahmudul Hasan Anik, Debarati Chatterjee, Katerina Chatziioannou, Hsin-Yu Chen, Alexander Clevinger, Carlos Conde, Nikolas Cruz-Camacho, Travis Dore, Christian Drischler, Hannah Elfner, Reed Essick, David Friedenberg, Suprovo Ghosh, Joaquin Grefa, Roland Haas, Alexander Haber, Jan Hammelmann, Steven Harris, Carl-Johan Haster, Tetsuo Hatsuda, Mauricio Hippert, Renan Hirayama, Jeremy W. Holt, Micheal Kahangirwe, Jamie Karthein, Toru Kojo, Philippe Landry, Zidu Lin, Matthew Luzum, Timothy Andrew Manning, Jordi Salinas San Martin, Cole Miller, Elias Roland Most, Debora Mroczek, Azwinndini Muronga, Nicolas Patino, Jeffrey Peterson, Christopher Plumberg, Damien Price, Constanca Providencia, Romulo Rougemont, Satyajit Roy, Hitansh Shah, Stuart Shapiro, Andrew W. Steiner, Michael Strickland, Hung Tan, Hajime Togashi, Israel Portillo Vazquez, Pengsheng Wen, Ziyuan Zhang, and MUSES Collaboration
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Multi-messenger physics ,Neutron star ,Dense matter ,Heavy-ion collisions ,Atomic physics. Constitution and properties of matter ,QC170-197 - Abstract
Abstract This review aims at providing an extensive discussion of modern constraints relevant for dense and hot strongly interacting matter. It includes theoretical first-principle results from lattice and perturbative QCD, as well as chiral effective field theory results. From the experimental side, it includes heavy-ion collision and low-energy nuclear physics results, as well as observations from neutron stars and their mergers. The validity of different constraints, concerning specific conditions and ranges of applicability, is also provided.
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- 2024
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3. Machine learning-based non-destructive terahertz detection of seed quality in peanut
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Weibin Jiang, Jun Wang, Ruiquan Lin, Riqing Chen, Wencheng Chen, Xin Xie, Kan-Lin Hsiung, and Hsin-Yu Chen
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Peanut ,Aflatoxin ,Quality identification ,Terahertz imaging technology ,Machine learning ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Rapid identification of peanut seed quality is crucial for public health. In this study, we present a terahertz wave imaging system using a convolutional neural network (CNN) machine learning approach. Terahertz waves are capable of penetrating the seed shell to identify the quality of peanuts without causing any damage to the seeds. The specificity of seed quality on terahertz wave images is investigated, and the image characteristics of five different qualities are summarized. Terahertz wave images are digitized and used for training and testing of convolutional neural networks, resulting in a high model accuracy of 98.7% in quality identification. The trained THz-CNNs system can accurately identify standard, mildewed, defective, dried and germinated seeds, with an average detection time of 2.2 s. This process does not require any sample preparation steps such as concentration or culture. Our method swiftly and accurately assesses shelled seed quality non-destructively.
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- 2024
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4. Identifying factors associated with substantially reduced adult height in patients with juvenile idiopathic arthritis: a retrospective cohort study
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Hsin-Yu Chen, Ya-Chiao Hu, Yao-Hsu Yang, and Bor-Luen Chiang
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Juvenile idiopathic arthritis ,Reduced adult height ,Systemic JIA ,Pediatrics ,RJ1-570 - Abstract
Abstract Background Juvenile idiopathic arthritis (JIA), an autoimmune disease affecting children or adolescents and causing joint or systemic symptoms, reportedly has a negative effect on the patients’ body height. This study aimed to identify factors attributable to substantially reduced adult height (SRAH) in JIA patients. Methods This single-center retrospective cohort study included patients from 2009 to 2019 in Taiwan. We collected JIA patients aged > 18 years at enrollment with a definite diagnosis and undergoing regular outpatient clinic follow-up or disease remission. Target height difference (THD), defined by adult height minus mid-parental height, was calculated for each patient. The calculation results yielded two groups, of which positive THD was defined as the optimal height (OH group) and those with THD below two standardized deviations as the SRAH group. Descriptive statistics and logistic regression analysis were used to analyze the data. Results Of 92 JIA patients, 57 and 12 were in the OH and the SRAH groups. Earlier disease onset, especially before the six-year-old, was noted in the SRAH group (p = 0.026). The distribution of JIA subtypes differed significantly between the two groups (p
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- 2024
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5. Dual hyperpolarized [1-13C]pyruvate and [13C]urea magnetic resonance imaging of prostate cancer
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Ivan de Kouchkovsky, Hao Nguyen, Hsin-Yu Chen, Xiaoxi Liu, Hecong Qin, Bradley A. Stohr, Romelyn Delos Santos, Michael A. Ohliger, Zhen Jane Wang, Robert A. Bok, Jeremy W. Gordon, Peder E.Z. Larson, Mary Frost, Kimberly Okamoto, Daniel Gebrezgiabhier, Matthew Cooperberg, Daniel B. Vigneron, John Kurhanewicz, and Rahul Aggarwal
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Hyperpolarized MRI ,Metabolic imaging ,Prostate cancer ,Pyruvate ,Urea ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Physics ,QC1-999 - Abstract
Background: Although multiparametric (mp) 1H magnetic resonance imaging (MRI) is increasingly used to detect and localize prostate cancer (PC), its correlation with tumor grade is limited. Hyperpolarized (HP) carbon-13 (13C) MR is an emerging imaging technique, which can be used to interrogate key biologic processes through in vivo detection of various HP probes. A distinct attribute of HP 13C MRI is the ability to detect multiple HP probes within a single acquisition. Here we report on the first simultaneous dual HP [1-13C]pyruvate and [13C]urea MRI with correlations to histopathologic findings in a patient with localized PC scheduled for radical prostatectomy. Material and methods: Paired HP 13C and standard mp 1H MRI were performed in a patient with biopsy-proven Gleason score 4 + 3 = 7 adenocarcinoma of the prostate scheduled for radical prostatectomy through a first-in-human pilot study of dual-agent HP MRI (NCT02526368). HP 13C MRI was performed using a clinical 3T scanner with 13C transmit-and-receive capabilities. Dynamic series of HP 13C pyruvate, lactate and urea imaging were acquired following intravenous (IV) injection of co-hyperpolarized [13C]urea (25 mM) and [1–13C]pyruvate (125 mM). The [1-13C]pyruvate-to-[1-13C]lactate conversion rate (kPL) was calculated using an inputless two-site exchange model; AUCurea was the [13C]urea signal summed over time. Following radical prostatectomy, whole-mount prostate histopathological slides were prepared and reviewed by an experienced genitourinary pathologist. Results: Following informed consent, the patient underwent paired mp 1H MRI and dual-agent HP MRI. mp 1H MRI revealed a 1.2 cm lesion in the left apical posterior zone. Dual-agent HP MRI identified a focus of increased [1-13C]pyruvate-to-[1-13C]lactate conversion rate (kPL) extending from the left apical posterior peripheral zone to the right gland. A corresponding area of abnormal tissue perfusion (AUCurea) was seen in the left gland. Metabolism-perfusion mismatch (with several foci of increased kPL/AUCurea) was observed throughout the tumor. Tumor extension to the right midgland was confirmed at the time of radical prostatectomy and staining for lactate dehydrogenase-A was increased throughout the tumor relative to surrounding benign prostatic tissue. Conclusion: This first-in-human radiopathologic study demonstrates the feasibility of dual-agent HP MRI in PC patients. Simultaneous assessment of tumor metabolism and perfusion was able to detect occult disease as well as to show a significant mismatch between intra-tumoral metabolism and tissue perfusion in high-grade PC. Prospective validation of these findings is warranted.
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- 2024
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6. Deciphering inter-catchment groundwater flow: A water balance perspective in the Choshui River Basin, Taiwan
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Hsin-Yu Chen, Hsin-Fu Yeh, Chien-Chung Ke, Ya-Sin Yang, and Chia-Chi Huang
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Inter-catchment Groundwater Flow (IGF) ,Water Balance ,Rainfall-Runoff Model ,Generalized Likelihood Uncertainty Estimation (GLUE) ,Physical geography ,GB3-5030 ,Geology ,QE1-996.5 - Abstract
Study region: Five catchments in upstream Choshui River Basin, Taiwan. Study focus: Inter-catchment groundwater flow (IGF)is commonly assumed negligible role in a catchment water balance due to its obscure nature. Many studies required detailed on-site geological information to analyze and confirm the significance of IGF. In contrast to these studies, this study investigated IGF using the rainfall-runoff model combined with the deterministic optimization algorithm and the stochastic generalized likelihood uncertainty estimation method, relying on simple and easily accessible water balance data. New hydrological insights for the region: The results showed that the hydrological environment was non-stationary, and IGF inclusion in the model improved its simulation performance. Though IGF direction varied among the catchments, at least three were found with significant IGF potential, with one of the catchments accounting for 30 % (505 mm) of the yearly precipitation. Ignoring IGF may lead to larger errors, especially in smaller catchments and during the dry season. Overall, this study highlights the importance of considering IGF in a catchment water balance and provides insights into the hydrological cycle.
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- 2024
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7. Bridging geographical disparities across 368 townships with healthcare system and socioeconomic factors in Taiwan
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Chia-Ling Hsieh, Chia-Yu Chung, Hsin-Yu Chen, Shwn-Huey Shieh, Ming-Shun Hsieh, and Vivian Chia-Rong Hsieh
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Medicine ,Science - Abstract
Abstract A universal health insurance program such as the National Health Insurance in Taiwan offers a wide coverage and increased access to healthcare services. Despite its ongoing efforts to enhance healthcare accessibility, differences in health for people living in urban and resource-deprived areas remain substantial. To investigate the longitudinal impact of the healthcare system and other potential structural drivers such as education and economic development on geographical disparities in health, we designed a panel study with longitudinal open secondary data, covering all 368 townships in Taiwan between 2013 and 2017. Our findings indicated higher mortality rates in the mountainous and rural areas near the east and south regions of the island in both years. Multivariate analyses showed an increase in the density of primary care physicians (PCP) was associated with lower all-cause mortality (β = − 0.72, p
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- 2023
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8. Suppressing Anaphase-Promoting Complex/Cyclosome–Cell Division Cycle 20 Activity to Enhance the Effectiveness of Anti-Cancer Drugs That Induce Multipolar Mitotic Spindles
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Scott C. Schuyler, Hsin-Yu Chen, and Kai-Ping Chang
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cancer ,anaphase-promoting complex/cyclosome (APC/C) ,cell division cycle 20 (CDC20) ,paclitaxel ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Paclitaxel induces multipolar spindles at clinically relevant doses but does not substantially increase mitotic indices. Paclitaxel’s anti-cancer effects are hypothesized to occur by promoting chromosome mis-segregation on multipolar spindles leading to apoptosis, necrosis and cyclic-GMP-AMP Synthase–Stimulator of Interferon Genes (cGAS-STING) pathway activation in daughter cells, leading to secretion of type I interferon (IFN) and immunogenic cell death. Eribulin and vinorelbine have also been reported to cause increases in multipolar spindles in cancer cells. Recently, suppression of Anaphase-Promoting Complex/Cyclosome–Cell Division Cycle 20 (APC/C-CDC20) activity using CRISPR/Cas9 mutagenesis has been reported to increase sensitivity to Kinesin Family 18a (KIF18a) inhibition, which functions to suppress multipolar mitotic spindles in cancer cells. We propose that a way to enhance the effectiveness of anti-cancer agents that increase multipolar spindles is by suppressing the APC/C-CDC20 to delay, but not block, anaphase entry. Delaying anaphase entry in genomically unstable cells may enhance multipolar spindle-induced cell death. In genomically stable healthy human cells, delayed anaphase entry may suppress the level of multipolar spindles induced by anti-cancer drugs and lower mitotic cytotoxicity. We outline specific combinations of molecules to investigate that may achieve the goal of enhancing the effectiveness of anti-cancer agents.
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- 2024
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9. Cosmology with the Laser Interferometer Space Antenna
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Pierre Auclair, David Bacon, Tessa Baker, Tiago Barreiro, Nicola Bartolo, Enis Belgacem, Nicola Bellomo, Ido Ben-Dayan, Daniele Bertacca, Marc Besancon, Jose J. Blanco-Pillado, Diego Blas, Guillaume Boileau, Gianluca Calcagni, Robert Caldwell, Chiara Caprini, Carmelita Carbone, Chia-Feng Chang, Hsin-Yu Chen, Nelson Christensen, Sebastien Clesse, Denis Comelli, Giuseppe Congedo, Carlo Contaldi, Marco Crisostomi, Djuna Croon, Yanou Cui, Giulia Cusin, Daniel Cutting, Charles Dalang, Valerio De Luca, Walter Del Pozzo, Vincent Desjacques, Emanuela Dimastrogiovanni, Glauber C. Dorsch, Jose Maria Ezquiaga, Matteo Fasiello, Daniel G. Figueroa, Raphael Flauger, Gabriele Franciolini, Noemi Frusciante, Jacopo Fumagalli, Juan García-Bellido, Oliver Gould, Daniel Holz, Laura Iacconi, Rajeev Kumar Jain, Alexander C. Jenkins, Ryusuke Jinno, Cristian Joana, Nikolaos Karnesis, Thomas Konstandin, Kazuya Koyama, Jonathan Kozaczuk, Sachiko Kuroyanagi, Danny Laghi, Marek Lewicki, Lucas Lombriser, Eric Madge, Michele Maggiore, Ameek Malhotra, Michele Mancarella, Vuk Mandic, Alberto Mangiagli, Sabino Matarrese, Anupam Mazumdar, Suvodip Mukherjee, Ilia Musco, Germano Nardini, Jose Miguel No, Theodoros Papanikolaou, Marco Peloso, Mauro Pieroni, Luigi Pilo, Alvise Raccanelli, Sébastien Renaux-Petel, Arianna I. Renzini, Angelo Ricciardone, Antonio Riotto, Joseph D. Romano, Rocco Rollo, Alberto Roper Pol, Ester Ruiz Morales, Mairi Sakellariadou, Ippocratis D. Saltas, Marco Scalisi, Kai Schmitz, Pedro Schwaller, Olga Sergijenko, Geraldine Servant, Peera Simakachorn, Lorenzo Sorbo, Lara Sousa, Lorenzo Speri, Danièle A. Steer, Nicola Tamanini, Gianmassimo Tasinato, Jesús Torrado, Caner Unal, Vincent Vennin, Daniele Vernieri, Filippo Vernizzi, Marta Volonteri, Jeremy M. Wachter, David Wands, Lukas T. Witkowski, Miguel Zumalacárregui, James Annis, Fëanor Reuben Ares, Pedro P. Avelino, Anastasios Avgoustidis, Enrico Barausse, Alexander Bonilla, Camille Bonvin, Pasquale Bosso, Matteo Calabrese, Mesut Çalışkan, Jose A. R. Cembranos, Mikael Chala, David Chernoff, Katy Clough, Alexander Criswell, Saurya Das, Antonio da Silva, Pratika Dayal, Valerie Domcke, Ruth Durrer, Richard Easther, Stephanie Escoffier, Sandrine Ferrans, Chris Fryer, Jonathan Gair, Chris Gordon, Martin Hendry, Mark Hindmarsh, Deanna C. Hooper, Eric Kajfasz, Joachim Kopp, Savvas M. Koushiappas, Utkarsh Kumar, Martin Kunz, Macarena Lagos, Marc Lilley, Joanes Lizarraga, Francisco S. N. Lobo, Azadeh Maleknejad, C. J. A. P. Martins, P. Daniel Meerburg, Renate Meyer, José Pedro Mimoso, Savvas Nesseris, Nelson Nunes, Vasilis Oikonomou, Giorgio Orlando, Ogan Özsoy, Fabio Pacucci, Antonella Palmese, Antoine Petiteau, Lucas Pinol, Simon Portegies Zwart, Geraint Pratten, Tomislav Prokopec, John Quenby, Saeed Rastgoo, Diederik Roest, Kari Rummukainen, Carlo Schimd, Aurélia Secroun, Alberto Sesana, Carlos F. Sopuerta, Ismael Tereno, Andrew Tolley, Jon Urrestilla, Elias C. Vagenas, Jorinde van de Vis, Rien van de Weygaert, Barry Wardell, David J. Weir, Graham White, Bogumiła Świeżewska, Valery I. Zhdanov, and The LISA Cosmology Working Group
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Laser Interferometer Space Antenna (LISA) ,Cosmology ,Atomic physics. Constitution and properties of matter ,QC170-197 - Abstract
Abstract The Laser Interferometer Space Antenna (LISA) has two scientific objectives of cosmological focus: to probe the expansion rate of the universe, and to understand stochastic gravitational-wave backgrounds and their implications for early universe and particle physics, from the MeV to the Planck scale. However, the range of potential cosmological applications of gravitational-wave observations extends well beyond these two objectives. This publication presents a summary of the state of the art in LISA cosmology, theory and methods, and identifies new opportunities to use gravitational-wave observations by LISA to probe the universe.
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- 2023
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10. Mitigating the Binary Viewing Angle Bias for Standard Sirens
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Alberto Salvarese and Hsin-Yu Chen
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Cosmological parameters ,Gravitational waves ,Neutron stars ,Astrophysics ,QB460-466 - Abstract
The inconsistency between experiments in the measurements of the local Universe expansion rate, the Hubble constant, suggests unknown systematics in the existing experiments or new physics. Gravitational-wave standard sirens, a method to independently provide direct measurements of the Hubble constant, have the potential to address this tension. Before that, it is critical to ensure there are no substantial systematics in the standard siren method. A significant systematic has been identified when the viewing angle of the gravitational-wave sources, the compact binary coalescences, was inferred inaccurately from electromagnetic observations of the sources. Such a systematic has led to a more than 10% discrepancy in the standard siren Hubble constant measurements with the observations of binary neutron star merger, GW170817. In this Letter, we develop a new formalism to infer and mitigate this systematic. We demonstrate that the systematic uncertainty of the Hubble constant measurements can be reduced to a level smaller than their statistical uncertainty with 5, 10, and 20 binary neutron star merger observations. We show that our formalism successfully reduces the systematics even if the shape of the biased viewing angle distribution does not follow precisely the model we choose. Our formalism ensures unbiased standard siren Hubble constant measurements when the binary viewing angles are inferred from electromagnetic observations.
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- 2024
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11. Unveiling the Incidence and Graft Survival Rate in Kidney Transplant Recipients With De Novo Thrombotic Microangiopathy: A Systematic Review and Meta-Analysis
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Chien-Ya Hsiung, Hsin-Yu Chen, Shih-Han Wang, and Ching-Ying Huang
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thrombotic microangiopathy ,kidney allograft ,renal function ,graft survival rate ,graft loss rate ,Specialties of internal medicine ,RC581-951 - Abstract
De novo thrombotic microangiopathy (TMA) is a rare and challenging condition in kidney transplant recipients, with limited research on its incidence and impact on graft survival. This study conducted a systematic review and meta-analysis of 28 cohorts/single-arm studies and 46 case series/reports from database inception to June 2022. In meta-analysis, among 14,410 kidney allograft recipients, de novo TMA occurred in 3.20% [95% confidence interval (CI): 1.93–4.77], with systemic and renal-limited TMA rates of 1.38% (95% CI: 06.5–2.39) and 2.80% (95% CI: 1.27–4.91), respectively. The overall graft loss rate of de novo TMA was 33.79% (95% CI: 26.14–41.88) in meta-analysis. This study provides valuable insights into the incidence and graft outcomes of de novo TMA in kidney transplant recipients.
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- 2024
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12. A Meteorological Drought Migration Model for Assessing the Spatiotemporal Paths of Drought in the Choushui River Alluvial Fan, Taiwan
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Hsin-Fu Yeh, Xin-Yu Lin, Chia-Chi Huang, and Hsin-Yu Chen
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standardized precipitation index ,bivariate copula function ,drought migration model ,drought spatiotemporal path ,Choushui River alluvial fan ,Geology ,QE1-996.5 - Abstract
Understanding drought evolution and its driving factors is crucial for effective water resource management and forecasting. This study enhances the analysis of drought probability by constructing bivariate distributions, providing a more realistic perspective than single-characteristic approaches. Additionally, a meteorological drought migration model is established to explore spatiotemporal paths and related characteristics of major drought events in the Choushui River alluvial fan. The results reveal a significant increase in the probability of southward-moving drought events after 1981. Before 1981, drought paths were diverse, while after 1981, these paths became remarkably similar, following a trajectory from north to south. This is primarily attributed to the higher rainfall in the northern region of the Choushui River alluvial fan from February to April, leading to a consistent southward movement of drought centroids. This study proposes that climate change is a primary factor influencing changes in the spatiotemporal paths of drought. It implies that changes in rainfall patterns and climate conditions can be discerned through the meteorological drought migration model. As a result, it provides the potential for simplifying drought-monitoring methods. These research findings provide further insight into the dynamic process of drought in the Choushui River alluvial fan and serve as valuable references for future water resource management.
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- 2024
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13. Hyperpolarized [2–13C]pyruvate MR molecular imaging with whole brain coverage
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Brian T. Chung, Yaewon Kim, Jeremy W. Gordon, Hsin-Yu Chen, Adam W. Autry, Philip M. Lee, Jasmine Y. Hu, Chou T. Tan, Chris Suszczynski, Susan M. Chang, Javier E. Villanueva-Meyer, Robert A. Bok, Peder E.Z. Larson, Duan Xu, Yan Li, and Daniel B. Vigneron
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Hyperpolarized carbon-13 ,Molecular imaging ,Brain Metabolism ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Hyperpolarized (HP) 13C Magnetic Resonance Imaging (MRI) was applied for the first time to image and quantify the uptake and metabolism of [2–13C]pyruvate in the human brain to provide new metabolic information on cerebral energy metabolism. HP [2–13C]pyruvate was injected intravenously and imaged in 5 healthy human volunteer exams with whole brain coverage in a 1-minute acquisition using a specialized spectral-spatial multi-slice echoplanar imaging (EPI) pulse sequence to acquire 13C-labeled volumetric and dynamic images of [2–13C]pyruvate and downstream metabolites [5–13C]glutamate and [2–13C]lactate. Metabolic ratios and apparent conversion rates of pyruvate-to-lactate (kPL) and pyruvate-to-glutamate (kPG) were quantified to investigate simultaneously glycolytic and oxidative metabolism in a single injection.
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- 2023
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14. Rare cause of ascites and pleural effusion: The first case report and literature review of pseudo–pseudo Meig's syndrome in Taiwan
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Yi-Hsiang Chao and Hsin-Yu Chen
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Ascites ,Pleural effusion ,Pseudo-pseudo Meig's syndrome ,Medicine (General) ,R5-920 - Abstract
Pseudo–pseudo Meigs' syndrome (PPMS) exhibits patients with ascites, pleural effusion, elevated CA-125, and diagnosed of systemic lupus erythematosus (SLE) eventually without evidence of ovarian or pelvic tumor. It's a rare diagnosis but it has a good response to treatment. We here present an 82-year-old female, who was found to have ascites, pleural effusion, and elevated CA-125. CT of abdomen revealed absence of pelvic tumor. However, a rapid decline in renal function and progressive proteinuria were also observed. We performed an autoimmune-associated investigation. A diagnosis of late-onset SLE was made due to meeting the criteria of serositis, hemolytic anemia, thrombocytopenia, renal disease, and positive anti-smith antibody. We gave this patient a regimen with steroids and hydroxychloroquine. Both ascites and pleural effusion resolved in one month. PPMS is an important differential diagnosis in female patients with ascites, pleural effusion, and elevated CA-125. A survey of the pelvic tumor should be done first to exclude Meigs' syndrome or pseudo-Meigs’ syndrome. SLE flare-up should be kept in mind even in the elderly.
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- 2022
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15. Erythropoiesis‐stimulating agents and incident malignancy in chronic kidney and end‐stage renal disease: A population‐based study
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Yu‐Shan Huang, Ming‐Feng Li, Mei‐Chen Lin, Shih‐Hsiang Ou, Jen‐Hung Wang, Chien‐Wei Huang, Kang‐Ju Chou, Hua‐Chang Fang, Po‐Tsang Lee, Chih‐Yang Hsu, Jin‐Shuen Chen, and Hsin‐Yu Chen
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Therapeutics. Pharmacology ,RM1-950 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Research investigating incident malignancy risk in erythropoiesis‐stimulating agent (ESA) users with chronic kidney disease (CKD) is lacking. We aimed to compare the incident cancer risk between ESA and non‐ESA users with CKD or end‐stage renal disease (ESRD). In this retrospective cohort study, all adults newly diagnosed with CKD or ESRD between 2000 and 2012 were enrolled. The study population included 98,748 patients. After case–control matching, 7115 patients were included. The defined daily dose (DDD) of ESA was used as the unit for measuring the amount of ESA prescribed. The primary outcome was the risk of incident malignancy. The secondary outcomes were incident malignancy risk in different tertiles of cumulative ESA doses and the risk of different types of cancers. The risk of incident malignancy was 1.84 times higher with ESA treatment than without ESA treatment (hazard ratio, 1.84; 95% confidence interval, 1.43–2.36; p
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- 2022
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16. Antineutrophil Cytoplasmic Antibody-Associated Vasculitis and the Risk of Developing Incidental Tuberculosis: A Population-Based Cohort Study
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Shan-Ho Chan, Ming-Feng Li, Shih-Hsiang Ou, Mei-Chen Lin, Jen-Hung Wang, Po-Tsang Lee, and Hsin-Yu Chen
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antineutrophil cytoplasmic antibody-associated vasculitis ,tuberculosis ,population-based study ,Medicine (General) ,R5-920 - Abstract
Background and Objectives: Treatment for antineutrophil cytoplasmic antibody-associated vasculitis (AAV) must deal with immunosuppression, as well as infections associated with a compromised immune system, such as tuberculosis (TB). Our aim was to examine the risk of incidental TB after diagnosis of AAV. Materials and Methods: This retrospective population-based cohort study was based on the data from the National Health Insurance Research Database in Taiwan. Patients with newly diagnosed granulomatous polyangiitis or microscopic polyangiitis were identified between 1 January 2000 and 31 December 2012. The primary outcome was risk of incidental TB. Cox proportional hazard models were used to evaluate the association between AAV and incidental TB. Results: A total of 2257 patients with AAV and a propensity-score matched cohort of 9028 patients were studied. Overall, patients with AAV were at a 1.48× higher risk of contracting incidental TB than the patients in the matched cohort (adjusted HR 1.48; 95% confidence interval [CI], 1.02–2.15). Note that the highest risk of contracting incidental TB was in the first two years following a diagnosis of AAV, with a nearly 1-fold increase in risk (adjusted HR, 1.91; 95% CI, 1.01–3.60). Female AAV patients were 3.24× more likely than females without AAV to develop TB (adjusted HR 3.24; 95% CI, 1.85–5.67). Conclusions: Patients with AAV exhibit a 48% elevated TB risk, notably, a 91% increase within the first two years postdiagnosis. Female AAV patients face a 3.24 times higher TB risk compared to females without AAV. This study is limited by potential misclassification and overestimation of AAV cases. Clinicians should closely monitor TB risk in AAV patients, especially in females and the initial two years following diagnosis.
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- 2023
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17. Multi-parametric hyperpolarized 13C/1H imaging reveals Warburg-related metabolic dysfunction and associated regional heterogeneity in high-grade human gliomas
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Adam W. Autry, Sana Vaziri, Marisa LaFontaine, Jeremy W. Gordon, Hsin-Yu Chen, Yaewon Kim, Javier E. Villanueva-Meyer, Annette Molinaro, Jennifer L. Clarke, Nancy Ann Oberheim Bush, Duan Xu, Janine M. Lupo, Peder E.Z. Larson, Daniel B. Vigneron, Susan M. Chang, and Yan Li
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GBM ,Hyperpolarized carbon-13 ,Metabolism ,Treatment effects ,IDH ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Dynamic hyperpolarized (HP)-13C MRI has enabled real-time, non-invasive assessment of Warburg-related metabolic dysregulation in glioma using a [1-13C]pyruvate tracer that undergoes conversion to [1-13C]lactate and [13C]bicarbonate. Using a multi-parametric 1H/HP-13C imaging approach, we investigated dynamic and steady-state metabolism, together with physiological parameters, in high-grade gliomas to characterize active tumor. Methods: Multi-parametric 1H/HP-13C MRI data were acquired from fifteen patients with progressive/treatment-naïve glioblastoma [prog/TN GBM, IDH-wildtype (n = 11)], progressive astrocytoma, IDH-mutant, grade 4 (G4AIDH+, n = 2) and GBM manifesting treatment effects (n = 2). Voxel-wise regional analysis of the cohort with prog/TN GBM assessed imaging heterogeneity across contrast-enhancing/non-enhancing lesions (CEL/NEL) and normal-appearing white matter (NAWM) using a mixed effects model. To enable cross-nucleus parameter association, normalized perfusion, diffusion, and dynamic/steady-state (HP-13C/spectroscopic) metabolic data were collectively examined at the 13C resolution. Prog/TN GBM were similarly compared against progressive G4AIDH+ and treatment effects. Results: Regional analysis of Prog/TN GBM metabolism revealed statistically significant heterogeneity in 1H choline-to-N-acetylaspartate index (CNI)max, [1-13C]lactate, modified [1-13C]lactate-to-[1-13C]pyruvate ratio (CELval > NELval > NAWMval); [1-13C]lactate-to-[13C]bicarbonate ratio (CELval > NELval/NAWMval); and 1H-lactate (CELval/NELval > NAWMundetected). Significant associations were found between normalized perfusion (cerebral blood volume, nCBV; peak height, nPH) and levels of [1-13C]pyruvate and [1-13C]lactate, as well as between CNImax and levels of [1-13C]pyruvate, [1-13C]lactate and modified ratio. GBM, by comparison to G4AIDH+, displayed lower perfusion %-recovery and modeled rate constants for [1-13C]pyruvate-to-[1-13C]lactate conversion (kPL), and higher 1H-lactate and [1-13C]pyruvate levels, while having higher nCBV, %-recovery, kPL, [1-13C]pyruvate-to-[1-13C]lactate and modified ratios relative to treatment effects. Conclusions: GBM consistently displayed aberrant, Warburg-related metabolism and regional heterogeneity detectable by novel HP-13C/1H imaging techniques.
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- 2023
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18. Effect of anti-diabetic drugs in dialysis patients with diabetes: a nationwide retrospective cohort study
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Shih-Hsiang Ou, Hsin-Yu Chen, Nai-Wen Fang, Chun-Hao Yin, Chien-Liang Chen, and Jin-Shuen Chen
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End-stage renal disease ,Dialysis ,Type 2 diabetes mellitus ,Anti-diabetic drugs ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Type 2 diabetes mellitus is common in patients undergoing dialysis. However, the association between anti-diabetic drug use and survival outcomes is rarely discussed. We aimed to investigate whether continued anti-diabetic medication use affects the survival of diabetic dialysis patients and whether different hypoglycemic drug use influences prognosis. Methods Using a nationwide database, we enrolled patients with incident end-stage renal disease under maintenance dialysis during 2011–2015 into the pre-existing diabetes dialysis (PDD), incident diabetes after dialysis (IDD), and non-diabetic dialysis (NDD) groups. The PDD group was further subclassified into patients who continued (PDD-M) and discontinued (PDD-NM) anti-diabetic drug use after dialysis. Results A total of 5249 dialysis patients were examined. The PDD-NM group displayed a significantly higher mortality rate than the IDD, PDD-M, and NDD groups (log-rank test P
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- 2021
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19. Spatial correlation of groundwater level with natural factors using geographically weighted regression model in the Choushui River Alluvial Fan, Taiwan
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Hsin-Fu Yeh, Jui-Chi Chang, Chia-Chi Huang, and Hsin-Yu Chen
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geographically weighted regression model ,groundwater level ,normalized difference vegetation index ,Choushui river ,Taiwan ,Science - Abstract
The groundwater of the Choushui River alluvial fan in Central Taiwan has been overexploited for a long time. It is essential to understand the factors governing changes in groundwater level (GWL) for the use of water resources. In this study, we first conducted a Mann–Kendall test to identify significant trends in the regional GWL and obtained its spatial characteristics using the Moran’s I index in the Choushui River alluvial fan. Furthermore, we established a geographically weighted regression (GWR) model to explore the spatial correlation between natural factors and GWL in dry and wet seasons from 1999 to 2019. The long-term trend analysis shows that the GWL of the Choushui River alluvial fan decline significantly. The Moran’s I index shows that the spatial distribution of GWL had a positive correlation in both dry and wet seasons. GWR model indicate that the GWL are affected by drainage density (Dd), slope (S), normalized difference vegetation index (NDVI), and precipitation (P) during the dry season, while Dd, S, NDVI, and wetness index (WI) have an effect on the GWL during the wet season. These results can not only describe the model applicability for exploring the relationship between natural factors and GWL but also be used as references for future regional water resource utilization and management.
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- 2022
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20. Groundwater Level Prediction with Deep Learning Methods
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Hsin-Yu Chen, Zoran Vojinovic, Weicheng Lo, and Jhe-Wei Lee
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GAN ,CNN ,LSTM ,imputation ,groundwater prediction ,alluvial fan of the Choushui River ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
The development of civilization and the preservation of environmental ecosystems are strongly dependent on water resources. Typically, an insufficient supply of surface water resources for domestic, industrial, and agricultural needs is supplemented with groundwater resources. However, groundwater is a natural resource that must accumulate over many years and cannot be recovered after a short period of recharge. Therefore, the long-term management of groundwater resources is an important issue for sustainable development. The accurate prediction of groundwater levels is the first step in evaluating total water resources and their allocation. However, in the process of data collection, data may be lost due to various factors. Filling in missing data is a main problem that any research field must address. It is well known that to maintain data integrity, one effective approach is missing value imputation (MVI). In addition, it has been demonstrated that machine learning may be a better tool. Therefore, the main purpose of this study was to utilize a generative adversarial network (GAN) that consists of a generative model and a discriminative model for imputation. Although the GAN could not capture the groundwater level endpoints in every section, the overall simulation performance was still excellent to some extent. Our results show that the GAN can improve the accuracy of water resource evaluations. In the current study, two interdisciplinary deep learning methods, univariate and Seq2val (sequence-to-value), were used for groundwater level estimation. In addition to addressing the significance of the parameter conditions, the advantages and disadvantages of these two models in hydrological simulations were also discussed and compared. Regarding parameter selection, the simulation results for univariate analysis were better than those for Seq2val analysis. Finally, univariate was employed to examine the limits of the models in long-term water level simulations. Our results suggest that the accuracy of CNNs is better, while LSTM is better for the simulation of multistep prediction. Therefore, the interdisciplinary deep learning approach may be beneficial for providing a better evaluation of water resources.
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- 2023
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21. Reviews and Syntheses: Promoting the Advancement of Hillslope Hydrology and Stability in Taiwan from the Perspective of Critical Zone Science
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Ya-Sin Yang, Hsin-Fu Yeh, Chia-Chi Huang, and Hsin-Yu Chen
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hillslope hydrology ,critical zone science ,landslide ,slope stability ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
Owing to active orogenic movement and the monsoon climate, rainfall-induced landslide disasters often occur in Taiwan. Hence, hillslope hydrology and stability have received considerable research attention. However, it remains difficult to accurately estimate the duration and consequences of hillslope instability induced by hillslope hydrology. Research on hillslope hydrology and stability is complicated by spatial heterogeneity, hydrological processes operating at various scales, spatiotemporal evolution, and geomorphological properties. Recent advances in critical zone science have provided an approach to extend geoscience studies. The “deep coupling” concept is essential for integrating physical, chemical, and biological processes on various spatiotemporal scales and for providing a macro and unified framework for evaluating internal properties and processes. Critical zone science and hillslope hydrology and stability both depend on interdisciplinary perspectives and approaches, monitoring strategies, and model analysis of integrating and coupling processes. They both share the characteristics of spatial heterogeneity, continuous evolution, and relevance to ecosystem services. To address the challenges related to hillslope hydrology and stability in Taiwan, we reviewed the progress in, relevance between, and common challenges to hillslope hydrology, stability, and critical zone science. We then presented a process-based integrated monitoring strategy, an interdisciplinary perspective, and a coupling analysis framework and model. The aim of this study was to promote the advancement of research on hillslope stability and hydrology in Taiwan.
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- 2023
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22. Prophylactic hemodialysis following coronary angiography and one-year outcomes in non-dialysis patients with chronic kidney disease: A propensity-matched study
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Hsin-Yu Chen, Shih-Hsiang Ou, Kang-Ju Chou, Hua-Chang Fang, Chien-Liang Chen, Chih-Yang Hsu, Chien-Wei Huang, Chung Chang, Po-Tsang Lee, and Cheng-Hsu Yang
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Hemodialysis ,Coronary angiography ,Nephropathy ,Chronic kidney disease ,Medicine (General) ,R5-920 - Abstract
Background/Purpose: Prophylactic hemodialysis after coronary angiography in patients with chronic kidney disease (CKD) prevents contrast nephropathy; however, the one-year outcomes are unclear. This study aimed to investigate the one-year outcomes of prophylactic hemodialysis against standard treatment in patients with CKD who underwent coronary angiography. Methods: A cohort study of 359 patients with CKD, coronary artery disease (CAD), and serum creatinine levels of 176.8–530.4 μmol/L, who were referred for elective coronary angiography was conducted. Propensity score matching identified 118 patient pairs for outcome comparisons. The hemodialysis group underwent prophylactic hemodialysis after coronary angiography, whereas the control group received standard treatment. The study's primary outcome was free from dialysis was considered the primary outcome, whereas the secondary outcome was overall survival. Unadjusted estimates of the probability of free from dialysis and overall survival were computed using Kaplan–Meier survival curves and log-rank tests. Cox proportional-hazards regression models were used in determining the risk factors associated with ESRD and mortality. Results: During a mean 9.3 months follow-up duration, the hemodialysis group had significantly better free from dialysis (85.6% vs. 64.4%; P = 0.002) and overall survival (85.4% vs. 78.5%; P = 0.008) rates than the control group. Cox proportional-hazards regression analyses of the propensity score-matched patients showed that the hemodialysis group had reduced risks for ESRD and mortality (hazard ratios, 0.32 and 0.48, respectively). Conclusion: Prophylactic Hemodialysis following coronary angiography was associated with reduced ESRD and mortality risks in CKD patients with CAD, who did not routinely undergo dialysis.
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- 2021
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23. Clinical physiological parameters for the prediction of gram-negative bacterial infection in the emergency department
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Chan-Peng Hsu, Hsin-Yu Chen, Wei-Lung Chen, Jiann-Hwa Chen, Chien-Cheng Huang, Po-Han Wu, and Jui-Yuan Chung
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Clinical parameters ,Gram-negative bacteria infection ,Emergency department ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Early detection and treatment of Gram-negative bacteria (GNB), major causative pathogens of sepsis (a potentially fatal condition caused by the body’s response to an infection), may benefit a patient’s outcome, since the mortality rate increases by 5–10% for each hour of delayed therapy. Unfortunately, GNB diagnosis is based on bacterial culture, which is time consuming. Therefore, an economic and effective GNB (defined as a positive blood, sputum, or urine culture) infection detection tool in the emergency department (ED) is warranted. Methods We conducted a retrospective cohort study in the ED of a university-affiliated medical center between January 01, 2014 and December 31, 2017. The inclusion criteria were as follows: (1) age ≥ 18; (2) clinical suspicion of bacterial infection; (3) bacterial culture from blood, sputum, or urine ordered and obtained in the ED. Descriptive statistics was performed on patient demographic characteristics, vital signs, laboratory data, infection sites, cultured microorganisms, and clinical outcomes. The accuracy of vital signs to predict GNB infection was identified via univariate logistic regression and receiver operating characteristic (ROC) curve analysis. Results A total of 797 patients were included in this study; the mean age was 71.8 years and 51.3% were male. The odds ratios of patients with body temperature ≥ 38.5 °C, heart rate ≥ 110 beats per minute, respiratory rate ≥ 20 breaths per minute, and Glasgow coma scale (GCS)
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- 2021
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24. Voltage-Controlled Magnetoelectric Devices for Neuromorphic Diffusion Process
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Cheng, Yang, Shu, Qingyuan, Lee, Albert, He, Haoran, Zhu, Ivy, Suhail, Haris, Chen, Minzhang, Chen, Renhe, Wang, Zirui, Zhang, Hantao, Wang, Chih-Yao, Yang, Shan-Yi, Hsin, Yu-Chen, Shih, Cheng-Yi, Lee, Hsin-Han, Cheng, Ran, Pamarti, Sudhakar, Kou, Xufeng, and Wang, Kang L.
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Computer Science - Neural and Evolutionary Computing ,Computer Science - Emerging Technologies ,Computer Science - Machine Learning ,Physics - Applied Physics - Abstract
Stochastic diffusion processes are pervasive in nature, from the seemingly erratic Brownian motion to the complex interactions of synaptically-coupled spiking neurons. Recently, drawing inspiration from Langevin dynamics, neuromorphic diffusion models were proposed and have become one of the major breakthroughs in the field of generative artificial intelligence. Unlike discriminative models that have been well developed to tackle classification or regression tasks, diffusion models as well as other generative models such as ChatGPT aim at creating content based upon contexts learned. However, the more complex algorithms of these models result in high computational costs using today's technologies, creating a bottleneck in their efficiency, and impeding further development. Here, we develop a spintronic voltage-controlled magnetoelectric memory hardware for the neuromorphic diffusion process. The in-memory computing capability of our spintronic devices goes beyond current Von Neumann architecture, where memory and computing units are separated. Together with the non-volatility of magnetic memory, we can achieve high-speed and low-cost computing, which is desirable for the increasing scale of generative models in the current era. We experimentally demonstrate that the hardware-based true random diffusion process can be implemented for image generation and achieve comparable image quality to software-based training as measured by the Frechet inception distance (FID) score, achieving ~10^3 better energy-per-bit-per-area over traditional hardware.
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- 2024
25. Low-Dimensional Nanostructures for Electrochemical Energy Applications
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Hsin-Yu Chen, Yi-Hong Xiao, Lin-Jiun Chen, Chi-Ang Tseng, and Chuan-Pei Lee
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diverse physical properties ,electrochemical energy ,graphene ,nanostructures ,low-dimensional structure ,transition metal chalcogenide ,Physics ,QC1-999 - Abstract
Materials with different nanostructures can have diverse physical properties, and they exhibit unusual properties as compared to their bulk counterparts. Therefore, the structural control of desired nanomaterials is intensely attractive to many scientific applications. In this brief review, we mainly focus on reviewing our recent reports based on the materials of graphene and the transition metal chalcogenide, which have various low-dimensional nanostructures, in relation to the use of electrocatalysts in electrochemical energy applications; moreover, related literatures were also partially selected for discussion. In addition, future aspects of the nanostructure design related to the further enhancement of the performance of pertinent electrochemical energy devices will also be mentioned.
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- 2020
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26. Assessment of higher-order singular value decomposition denoising methods on dynamic hyperpolarized [1-13C]pyruvate MRI data from patients with glioma
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Sana Vaziri, Adam W. Autry, Marisa Lafontaine, Yaewon Kim, Jeremy W. Gordon, Hsin-Yu Chen, Jasmine Y. Hu, Janine M. Lupo, Susan M. Chang, Jennifer L. Clarke, Javier E. Villanueva-Meyer, Nancy Ann Oberheim Bush, Duan Xu, Peder E.Z. Larson, Daniel B. Vigneron, and Yan Li
- Subjects
Hyperpolarized ,Carbon-13 ,Denoising ,Signal-to-noise ratio ,Glioma ,Higher-order singular value decomposition ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Real-time metabolic conversion of intravenously-injected hyperpolarized [1-13C]pyruvate to [1-13C]lactate and [13C]bicarbonate in the brain can be measured using dynamic hyperpolarized carbon-13 (HP-13C) MRI. However, voxel-wise evaluation of metabolism in patients with glioma is challenged by the limited signal-to-noise ratio (SNR) of downstream 13C metabolites, especially within lesions. The purpose of this study was to evaluate the ability of higher-order singular value decomposition (HOSVD) denoising methods to enhance dynamic HP [1-13C]pyruvate MRI data acquired from patients with glioma. Methods: Dynamic HP-13C MRI were acquired from 14 patients with glioma. The effects of two HOSVD denoising techniques, tensor rank truncation-image enhancement (TRI) and global–local HOSVD (GL-HOSVD), on the SNR and kinetic modeling were analyzed in [1-13C]lactate data with simulated noise that matched the levels of [13C]bicarbonate signals. Both methods were then evaluated in patient data based on their ability to improve [1-13C]pyruvate, [1-13C]lactate and [13C]bicarbonate SNR. The effects of denoising on voxel-wise kinetic modeling of kPL and kPB was also evaluated. The number of voxels with reliable kinetic modeling of pyruvate-to-lactate (kPL) and pyruvate-to-bicarbonate (kPB) conversion rates within regions of interest (ROIs) before and after denoising was then compared. Results: Both denoising methods improved metabolite SNR and regional signal coverage. In patient data, the average increase in peak dynamic metabolite SNR was 2-fold using TRI and 4–5 folds using GL-HOSVD denoising compared to acquired data. Denoising reduced kPL modeling errors from a native average of 23% to 16% (TRI) and 15% (GL-HOSVD); and kPB error from 42% to 34% (TRI) and 37% (GL-HOSVD) (values were averaged voxelwise over all datasets). In contrast-enhancing lesions, the average number of voxels demonstrating within-tolerance kPL modeling error relative to the total voxels increased from 48% in the original data to 84% (TRI) and 90% (GL-HOSVD), while the number of voxels showing within-tolerance kPB modeling error increased from 0% to 15% (TRI) and 8% (GL-HOSVD). Conclusion: Post-processing denoising methods significantly improved the SNR of dynamic HP-13C imaging data, resulting in a greater number of voxels satisfying minimum SNR criteria and maximum kinetic modeling errors in tumor lesions. This enhancement can aid in the voxel-wise analysis of HP-13C data and thereby improve monitoring of metabolic changes in patients with glioma following treatment.
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- 2022
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27. The LIGO HET Response (LIGHETR) Project to Discover and Spectroscopically Follow Optical Transients Associated with Neutron Star Mergers
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M. J. Bustamante-Rosell, Greg Zeimann, J. Craig Wheeler, Karl Gebhardt, Aaron Zimmerman, Chris Fryer, Oleg Korobkin, Richard Matzner, V. Ashley Villar, S. Karthik Yadavalli, Kaylee M. de Soto, Matthew Shetrone, Steven Janowiecki, Pawan Kumar, David Pooley, Benjamin P. Thomas, Hsin-Yu Chen, Lifan Wang, Jozsef Vinkó, David J. Sand, Ryan Wollaeger, Frederic V. Hessman, and Kristen B. McQuinn
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Gravitational wave astronomy ,Astrophysics ,QB460-466 - Abstract
The LIGO HET Response (LIGHETR) project is an enterprise to follow up optical transients (OTs) discovered as gravitational-wave merger sources by the LIGO/Virgo collaboration (LVC). Early spectroscopy has the potential to constrain crucial parameters such as the aspect angle. The LIGHETR collaboration also includes the capacity to model the spectroscopic evolution of mergers to facilitate a real-time direct comparison of models with our data. The principal facility is the Hobby–Eberly Telescope. LIGHETR uses the massively replicated VIRUS array of spectrographs to search for associated OTs and obtain early blue spectra, and in a complementary role, the low-resolution LRS2 spectrograph is used to obtain spectra of viable candidates as well as a densely sampled series of spectra of true counterparts. Once an OT is identified, the anticipated cadence of spectra would match or considerably exceed anything achieved for GW170817 = AT2017gfo for which there were no spectra in the first 12 hr and thereafter only roughly once daily. We describe special HET-specific software written to facilitate the program and attempts to determine the flux limits to undetected sources. We also describe our campaign to follow up OT candidates during the third observational campaign of the LIGO and Virgo Scientific Collaborations. We obtained VIRUS spectroscopy of candidate galaxy hosts for five LVC gravitational-wave events and LRS2 spectra of one candidate for the OT associated with S190901ap. We identified that candidate, ZTF19abvionh = AT2019pip, as a possible Wolf–Rayet star in an otherwise unrecognized nearby dwarf galaxy.
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- 2023
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28. The Hitchhiker’s Guide to the Galaxy Catalog Approach for Dark Siren Gravitational-wave Cosmology
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Jonathan R. Gair, Archisman Ghosh, Rachel Gray, Daniel E. Holz, Simone Mastrogiovanni, Suvodip Mukherjee, Antonella Palmese, Nicola Tamanini, Tessa Baker, Freija Beirnaert, Maciej Bilicki, Hsin-Yu Chen, Gergely Dálya, Jose Maria Ezquiaga, Will M. Farr, Maya Fishbach, Juan Garcia-Bellido, Tathagata Ghosh, Hsiang-Yu Huang, Christos Karathanasis, Konstantin Leyde, Ignacio Magaña Hernandez, Johannes Noller, Gregoire Pierra, Peter Raffai, Antonio Enea Romano, Monica Seglar-Arroyo, Danièle A. Steer, Cezary Turski, Maria Paola Vaccaro, and Sergio Andrés Vallejo-Peña
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Gravitational wave astronomy ,Hubble constant ,Cosmology ,Astronomy ,QB1-991 - Abstract
We outline the “dark siren” galaxy catalog method for cosmological inference using gravitational wave (GW) standard sirens, clarifying some common misconceptions in the implementation of this method. When a confident transient electromagnetic counterpart to a GW event is unavailable, the identification of a unique host galaxy is in general challenging. Instead, as originally proposed by Schutz, one can consult a galaxy catalog and implement a dark siren statistical approach incorporating all potential host galaxies within the localization volume. Trott & Huterer recently claimed that this approach results in a biased estimate of the Hubble constant, H _0 , when implemented on mock data, even if optimistic assumptions are made. We demonstrate explicitly that, as previously shown by multiple independent groups, the dark siren statistical method leads to an unbiased posterior when the method is applied to the data correctly. We highlight common sources of error possible to make in the generation of mock data and implementation of the statistical framework, including the mismodeling of selection effects and inconsistent implementations of the Bayesian framework, which can lead to a spurious bias.
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- 2023
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29. Low-Frequency Ground Vibrations Generated by Debris Flows Detected by a Lab-Fabricated Seismometer
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Ching-Jer Huang, Hsin-Yu Chen, Chung-Ray Chu, Ching-Ren Lin, Li-Chen Yen, Hsiao-Yuen Yin, Chau-Chang Wang, and Ban-Yuan Kuo
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seismometer ,geophone ,debris flow ,low-frequency ground vibration ,frequency–response function ,Aiyuzi Stream ,Chemical technology ,TP1-1185 - Abstract
A lab-fabricated ocean bottom seismometer was modified and deployed terrestrially to detect low-frequency (
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- 2022
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30. A Heat-Killed Probiotic Mixture Regulates Immune T Cells Balance and IgE Production in House Dust Mite Extraction-Induced Atopic Dermatitis Mice
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Hsin-Yu Chen, Yung-Tsung Chen, Kuan-Yi Li, Hsiao-Wen Huang, Yu-Chun Lin, and Ming-Ju Chen
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probiotics ,atopic dermatitis ,immune T cells ,immunoglobulin E ,Biology (General) ,QH301-705.5 - Abstract
Atopic dermatitis (AD) is a chronic and relapsing inflammatory skin disease accompanied with severe itching and skin lesions. Current studies have demonstrated that probiotics can exert an immunomodulatory effect, improve epithelial barrier function, and normalize the composition of gut microbiota. Thus, the aim of this study was to investigate the effect of probiotics on the immune balance of AD in vivo. We first screened two lactic acid bacteria strains, which were Lactococcus lactis subsp. cremoris MP01 and Lactobacillus paracasei subsp. paracasei MP02, from 10 strains isolated from traditional fermented milk with inflammation regulating activities in vitro. In the house dust mite (HDM) extraction-induced AD mouse model, mice were assigned randomly to four groups: control group (PC), HDM-induced AD group (NC), HDM-induced AD mice with administration of a mixture of heat-killed MP01 and MP02 at a low concentration (LD), and high concentration (HD) groups. Compared with the NC group, the probiotic treatments could relieve the AD symptoms. Moreover, the LD group significantly decreased total and HDM-specific IgE concentration. These results indicated that a combination of heat-killed MP01 and MP02 strains modulated the proportion of IL4+CD4+ T cells and IFNγ+CD4+ T cells in the spleen of HDM extraction-induced AD mice. In conclusion, administration of the heat-killed MP01 and MP02 mixtures appeared to relieve the classic AD signs, decrease serum IgE concentration, and rebalance the population of Th1/Th2 cells in HDM extraction-induced AD mice. The immunomodulatory activities of a combination of heat-killed MP01 and MP02 provided a potential new therapeutic strategy against AD.
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- 2022
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31. Simultaneous auricular reconstruction and transcutaneous bone conduction device implantation in patients with microtia
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Kai-Chieh Chan, Christopher Glenn Wallace, Valerie Wai-Yee Ho, Che-Ming Wu, Hsin-Yu Chen, and Zung-Chung Chen
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Medicine (General) ,R5-920 - Abstract
Background/Purpose: The Bonebridge (BB) is a newly designed transcutaneous bone conduction hearing implant. We describe, for the first time, simultaneous BB implantation and different surgical techniques of auricular reconstruction for microtia patients with aural atresia/stenosis. Methods: Ten patients with unilateral or bilateral microtia underwent BB implantation combined simultaneously with either total auricular reconstruction using bespoke hand-carved Medpor framework or second stage auricular projection using autologous costal cartilage framework. Auditory aided and unaided sound fields were evaluated using (1) a pure-tone average (PTA4), (2) a speech reception threshold (SRT), and (3) a Speech Discrimination Score (SDS) at a sound level of 65 dB SPL. Results: All patients and their families were satisfied with the aesthetic outcome of their constructed ears with no requests for further revision. No major complications were encountered. One patient developed minor partial skin graft epidermolysis that healed uneventfully, and another patient had a three month period of auditory acclimatization to the BB device that resolved. Postoperatively, the mean aided PTA4 decreased by 35.35 dB, while the SRT was 54.5 dB HL unaided and 28 dB HL with use of a BB sound processor. The SDS increased by 16.4%–65 dB SPL. Conclusion: Simultaneous BB implantation during either total auricular reconstruction or framework projection for microtia patients who have aural atresia/stenosis is feasible and safe. This approach reduces operative stages, thereby minimizing schooling/occupational disruption and time to total microtia reconstruction and auditory rehabilitation. Keywords: Microtia reconstruction, Transcutaneous bone conduction hearing implant, Medpor, Autologous costal cartilage, Combined approach
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- 2019
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32. Deep Learning Applied to Defect Detection in Powder Spreading Process of Magnetic Material Additive Manufacturing
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Hsin-Yu Chen, Ching-Chih Lin, Ming-Huwi Horng, Lien-Kai Chang, Jian-Han Hsu, Tsung-Wei Chang, Jhih-Chen Hung, Rong-Mao Lee, and Mi-Ching Tsai
- Subjects
convolution neural network ,metal additive manufacturing ,powder-spreading defect ,selective laser melting ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
Due to its advantages of high customization and rapid production, metal laser melting manufacturing (MAM) has been widely applied in the medical industry, manufacturing, aerospace and boutique industries in recent years. However, defects during the selective laser melting (SLM) manufacturing process can result from thermal stress or hardware failure during the selective laser melting (SLM) manufacturing process. To improve the product’s quality, the use of defect detection during manufacturing is necessary. This study uses the process images recorded by powder bed fusion equipment to develop a detection method, which is based on the convolutional neural network. This uses three powder-spreading defect types: powder uneven, powder uncovered and recoater scratches. This study uses a two-stage convolutional neural network (CNN) model to finish the detection and segmentation of defects. The first stage uses the EfficientNet B7 to classify the images with/without defects, and then to locate the defects by evaluating three different instance segmentation networks in second stage. Experimental results show that the accuracy and Dice measurement of Mask-R-CNN network with ResNet 152 backbone can reach 0.9272 and 0.9438. The computational time of an image only takes approximately 0.2197 sec. The used CNN model meets the requirements of the early detected defects, regarding the SLM manufacturing process.
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- 2022
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33. Immediate Effect of Customized Foot Orthosis on Plantar Pressure and Contact Area in Patients with Symptomatic Hallux Valgus
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Hsin-Yu Chen, Hsien-Te Peng, Chin-Kang Chang, Fu-Ting Wang, Chia-Hao Yen, Tsung-Yang Wang, Hsiang-Chun Chuang, Fang-Yao Chiu, and Chen-Yi Song
- Subjects
hallux valgus ,customized foot orthotic ,insole ,plantar pressure ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Foot orthotics are recommended for the treatment of hallux valgus. The effects of customized foot orthoses (FOs) designed with both medial longitudinal and transverse arch supports are poorly understood, however. This study aimed to investigate the immediate effect of customized FOs on the plantar pressure and contact area in patients with symptomatic hallux valgus. We recruited 18 patients with a mean hallux valgus angle of 27.3 ± 11.1°. Plantar pressure while walking with FOs or flat insoles (FIs) was monitored with a wireless in-shoe plantar pressure-sensing system. Peak pressure (PP), peak force (PF), pressure-time integral (PTI), force-time integral (FTI), and contact area with FOs and FIs were compared. The PF, PTI, and FTI of the midfoot were significantly higher (p < 0.05), and the PP and PTI of the rearfoot were significantly lower (p < 0.05) with the FOs than the FIs. The FOs significantly increased the contact area of the midfoot and rearfoot (p < 0.05) and reduced the contact area of the forefoot (p < 0.05). These results suggest that customized FOs redistribute plantar pressure and the contact area of the midfoot and rearfoot, improving the functional support of the midfoot for patients with hallux valgus.
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- 2022
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34. Application of Image Technique to Obtain Surface Velocity and Bed Elevation in Open-Channel Flow
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Yen-Cheng Lin, Hao-Che Ho, Tzu-An Lee, and Hsin-Yu Chen
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LSPIV ,shallow-water equations ,bedform ,nonintrusive method ,water depth measurement ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
The frequency of droughts and floods is increasing due to the extreme climate. Therefore, water resource planning, allocation, and disaster prevention have become increasingly important. One of the most important kinds of hydrological data in water resources planning and management is discharge. The general way to measure the water depth and discharge is to use the Acoustic Doppler Current Profiler (ADCP), a semi-intrusive instrument. This method would involve many human resources and pose severe hazards by floods and extreme events. In recent years, it has become mainstream to measure hydrological data with nonintrusive methods such as the Large-Scale Particle Image Velocimetry (LSPIV), which is used to measure the surface velocity of rivers and estimate the discharge. However, the unknown water depth is an obstacle for this technique. In this study, a method combined with LSPIV to estimate the bathymetry was proposed. The experiments combining the LSPIV technique and the continuity equation to obtain the bed elevation were conducted in a 27 m long and 1 m wide flume. The flow conditions in the experiments were ensured to be within uniform and subcritical flow, and thermoplastic rubber particles were used as the tracking particles for the velocity measurement. The two-dimensional bathymetry was estimated from the depth-averaged velocity and the continuity equation with the leapfrog scheme in a predefined grid under the constraints of Courant–Friedrichs–Lewy (CFL). The LSPIV results were verified using Acoustic Doppler Velocimetry (ADV) measurements, and the bed elevation data of this study were verified using conventional point gauge measurements. The results indicate that the proposed method effectively estimated the variation of the bed elevation, especially in the shallow water level, with an average accuracy of 90.8%. The experimental results also showed that it is feasible to combine the nonintrusive imaging technique with the numerical calculation in solving the water depth and bed elevation.
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- 2022
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35. Carbapenem-Resistant Enterobacterales in Long-Term Care Facilities: A Global and Narrative Review
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Hsin-Yu Chen, Shio-Shin Jean, Yu-Lin Lee, Min-Chi Lu, Wen-Chien Ko, Po-Yu Liu, and Po-Ren Hsueh
- Subjects
Enterobacteriaceae ,long-term care facilities ,oxacillinase ,carbapenemases ,metallo-beta-lactamase ,Microbiology ,QR1-502 - Abstract
The emergence of carbapenem-resistant Enterobacterales (CRE) has become a major public health concern. Moreover, its colonization among residents of long-term care facilities (LTCFs) is associated with subsequent infections and mortality. To further explore the various aspects concerning CRE in LTCFs, we conducted a literature review on CRE colonization and/or infections in long-term care facilities. The prevalence and incidence of CRE acquisition among residents of LTCFs, especially in California, central Italy, Spain, Japan, and Taiwan, were determined. There was a significant predominance of CRE in LTCFs, especially in high-acuity LTCFs with mechanical ventilation, and thus may serve as outbreak centers. The prevalence rate of CRE in LTCFs was significantly higher than that in acute care settings and the community, which indicated that LTCFs are a vital reservoir for CRE. The detailed species and genomic analyses of CRE among LTCFs reported that Klebsiella pneumoniae is the primary species in the LTCFs in the United States, Spain, and Taiwan. KPC-2-containing K. pneumoniae strains with sequence type 258 is the most common sequence type of KPC-producing K. pneumoniae in the LTCFs in the United States. IMP-11- and IMP-6-producing CRE were commonly reported among LTCFs in Japan. OXA-48 was the predominant carbapenemase among LTCFs in Spain. Multiple risk factors associated with the increased risk for CRE acquisition in LTCFs were found, such as comorbidities, immunosuppressive status, dependent functional status, usage of gastrointestinal devices or indwelling catheters, mechanical ventilation, prior antibiotic exposures, and previous culture reports. A high CRE acquisition rate and prolonged CRE carriage duration after colonization were found among residents in LTCFs. Moreover, the patients from LTCFs who were colonized or infected with CRE had poor clinical outcomes, with a mortality rate of up to 75% in infected patients. Infection prevention and control measures to reduce CRE in LTCFs is important, and could possibly be controlled via active surveillance, contact precautions, cohort staffing, daily chlorhexidine bathing, healthcare-worker education, and hand-hygiene adherence.
- Published
- 2021
- Full Text
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36. Characterization of serial hyperpolarized 13C metabolic imaging in patients with glioma
- Author
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Adam W. Autry, Jeremy W. Gordon, Hsin-Yu Chen, Marisa LaFontaine, Robert Bok, Mark Van Criekinge, James B. Slater, Lucas Carvajal, Javier E. Villanueva-Meyer, Susan M. Chang, Jennifer L. Clarke, Janine M. Lupo, Duan Xu, Peder E.Z. Larson, Daniel B. Vigneron, and Yan Li
- Subjects
Hyperpolarized ,Carbon-13 ,Metabolism ,Kinetics ,Glioma ,Bevacizumab ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Hyperpolarized carbon-13 (HP-13C) MRI is a non-invasive imaging technique for probing brain metabolism, which may improve clinical cancer surveillance. This work aimed to characterize the consistency of serial HP-13C imaging in patients undergoing treatment for brain tumors and determine whether there is evidence of aberrant metabolism in the tumor lesion compared to normal-appearing tissue. Methods: Serial dynamic HP [1-13C]pyruvate MRI was performed on 3 healthy volunteers (6 total examinations) and 5 patients (21 total examinations) with diffuse infiltrating glioma during their course of treatment, using a frequency-selective echo-planar imaging (EPI) sequence. HP-13C imaging at routine clinical timepoints overlapped treatment, including radiotherapy (RT), temozolomide (TMZ) chemotherapy, and anti-angiogenic/investigational agents. Apparent rate constants for [1-13C]pyruvate conversion to [1-13C]lactate (kPL) and [13C]bicarbonate (kPB) were simultaneously quantified based on an inputless kinetic model within normal-appearing white matter (NAWM) and anatomic lesions defined from 1H MRI. The inter/intra-subject consistency of kPL-NAWM and kPB-NAWM was measured in terms of the coefficient of variation (CV). Results: When excluding scans following anti-angiogenic therapy, patient values of kPL-NAWM and kPB-NAWM were 0.020 s−1 ± 23.8% and 0.0058 s−1 ± 27.7% (mean ± CV) across 17 HP-13C MRIs, with intra-patient serial kPL-NAWM/kPB-NAWM CVs ranging 6.8–16.6%/10.6–40.7%. In 4/5 patients, these values (0.018 s−1 ± 13.4% and 0.0058 s−1 ± 24.4%; n = 13) were more similar to those from healthy volunteers (0.018 s−1 ± 5.0% and 0.0043 s−1 ± 12.6%; n = 6) (mean ± CV). The anti-angiogenic agent bevacizumab was associated with global elevations in apparent rate constants, with maximum kPL-NAWM in 2 patients reaching 0.047 ± 0.001 and 0.047 ± 0.003 s−1 (±model error). In 3 patients with progressive disease, anatomic lesions showed elevated kPL relative to kPL-NAWM of 0.024 ± 0.001 s−1 (±model error) in the absence of gadolinium enhancement, and 0.032 ± 0.008, 0.040 ± 0.003 and 0.041 ± 0.009 s−1 with gadolinium enhancement. The lesion kPB in patients was reduced to unquantifiable values compared to kPB-NAWM. Conclusion: Serial measures of HP [1-13C]pyruvate metabolism displayed consistency in the NAWM of healthy volunteers and patients. Both kPL and kPB were globally elevated following bevacizumab treatment, while progressive disease demonstrated elevated kPL in gadolinium-enhancing and non-enhancing lesions. Larger prospective studies with homogeneous patient populations are planned to evaluate metabolic changes following treatment.
- Published
- 2020
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- View/download PDF
37. Quantifying the Relative Contribution of the Climate Change and Human Activity on Runoff in the Choshui River Alluvial Fan, Taiwan
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Hsin-Yu Chen, Chia-Chi Huang, and Hsin-Fu Yeh
- Subjects
Budyko framework ,runoff ,climate change and anthropogenic activity ,Choshui River alluvial fan ,Agriculture - Abstract
Climate factors and human activities are the leading causes of changes in the hydrological cycle. In addition to being an important part of the hydrological cycle, runoff is also an important indicator for assessing the amount of available water. Therefore, it is necessary to explore the reasons that have caused changes in runoff. In this study, the causes of runoff changes in the alluvial fan of the Choshui River from 1980–2018 are explored. Two simple methods, including a decomposition method based on the Budyko structure and a method based on climate elasticity, for which the necessary data are easy to obtain, are used to quantify the impact of climate factors and human activities on runoff changes. The results show that the runoff in the long term shows a significant transition point in 2003, where climate factors have contributed more than 90% of the change, while the influence of human activities on the changes in runoff appears to be relatively small. Moreover, the Budyko method and the Normalized Difference Vegetation Index (NDVI) show that the vegetation cover has decreased. In addition to providing a simple method to assess the causes of changes in runoff, this study also analyzes the causes of changes in the runoff of the alluvial fan of the Choshui River to provide a reference for water resource policy and land use management.
- Published
- 2021
- Full Text
- View/download PDF
38. Using Budding Yeast to Identify Molecules That Block Cancer Cell ‘Mitotic Slippage’ Only in the Presence of Mitotic Poisons
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Scott C. Schuyler and Hsin-Yu Chen
- Subjects
Saccharomyces cerevisiae ,budding yeast ,cancer ,cell cycle ,mitosis ,spindle assembly checkpoint ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Research on the budding yeast Saccharomyces cerevisiae has yielded fundamental discoveries on highly conserved biological pathways and yeast remains the best-studied eukaryotic cell in the world. Studies on the mitotic cell cycle and the discovery of cell cycle checkpoints in budding yeast has led to a detailed, although incomplete, understanding of eukaryotic cell cycle progression. In multicellular eukaryotic organisms, uncontrolled aberrant cell division is the defining feature of cancer. Some of the most successful classes of anti-cancer chemotherapeutic agents are mitotic poisons. Mitotic poisons are thought to function by inducing a mitotic spindle checkpoint-dependent cell cycle arrest, via the assembly of the highly conserved mitotic checkpoint complex (MCC), leading to apoptosis. Even in the presence of mitotic poisons, some cancer cells continue cell division via ‘mitotic slippage’, which may correlate with a cancer becoming refractory to mitotic poison chemotherapeutic treatments. In this review, knowledge about budding yeast cell cycle control is explored to suggest novel potential drug targets, namely, specific regions in the highly conserved anaphase-promoting complex/cyclosome (APC/C) subunits Apc1 and/or Apc5, and in a specific N-terminal region in the APC/C co-factor cell division cycle 20 (Cdc20), which may yield molecules which block ‘mitotic slippage’ only in the presence of mitotic poisons.
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- 2021
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39. Hepatic Arterial Infusion Chemotherapy Followed by Lipiodol Infusion for Advanced Hepatocellular Carcinoma with Portal Vein Tumor Thrombus: A Single-Center Experience
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Kuan-Ting Chen, Kun-Feng Tsai, Henry W. C. Leung, Agnes L. F. Chan, Shyh-Yau Wang, Huei-Lung Liang, Sheng-Yeh Tang, Chu-Kuang Chou, Hsin-Yu Chen, Shan-Ho Chan, and Ming-Feng Li
- Subjects
hepatocellular carcinoma ,hepatic arterial infusion chemotherapy ,lipiodol infusion ,portal vein tumor thrombosis ,Medicine (General) ,R5-920 - Abstract
Background and Objectives: To evaluate the effectiveness of hepatic arterial infusion chemotherapy (HAIC) followed by lipiodol infusion in advanced hepatocellular carcinoma (HCC) with portal vein tumor thrombus (PVTT). Materials and Methods: Thirty-two patients with advanced HCC and PVTT who received HAIC with regimens of cisplatin, mitomycin-C, and 5-fluorouracil followed by lipiodol infusion were enrolled. The primary efficacy endpoint was tumor response rate. The modified Response Evaluation Criteria in Solid Tumors (mRECIST) was used for assessment of treatment response. The secondary endpoints were overall survival (OS) and progression free survival (PFS). Prognostic factors for survival also were evaluated. Results: The median OS and PFS were 11.9 and 9.5 months, respectively. Seventeen patients (53.1%) achieved objective response, and 23 patients (71.9%) achieved disease control. The length of survival in the responder and disease control groups was longer than in the non-responder and progressive disease groups after two cycles of HAIC (responder vs. non-responder: 16.5 vs. 7.9 months, p = 0.001; disease control vs. progressive disease: 12.3 vs. 5.6 months, p < 0.001) and after completing HAIC (responder vs. non-responder: 15.7 vs. 6.9 months, p = 0.001; disease control vs. progressive disease: 13.6 vs. 6.9 months, p < 0.001). Better survival was associated with Child-Pugh A liver function (p = 0.013), with early response to two HAIC cycles (p = 0.009), and with response (p = 0.02) and disease control (p = 0.001) after completing HAIC treatment. Conclusion: HAIC followed by lipiodol infusion is a safe and feasible treatment for advanced HCC with PVTT. Patients with early response could continue HAIC treatment with expected prolonged survival.
- Published
- 2021
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40. Deletion of Budding Yeast MAD2 Suppresses Clone-to-Clone Differences in Artificial Linear Chromosome Copy Numbers and Gives Rise to Higher Retention Rates
- Author
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Scott C. Schuyler, Lin-Ing Wang, Yi-Shan Ding, Yi-Chieh Lee, and Hsin-Yu Chen
- Subjects
budding yeast ,Saccharomyces cerevisiae ,chromosome ,mitotic spindle checkpoint ,Mitotic Arrest-Deficient 2 (MAD2) ,quantitative polymerase chain reaction (qPCR) ,Biology (General) ,QH301-705.5 - Abstract
Our goal was to investigate the changes in artificial short-linear chromosome average copy numbers per cell arising from partial or full loss of Mitotic Arrest-Deficient 2 (MAD2) spindle checkpoint function in budding yeast Saccharomyces cerevisiae. Average artificial linear chromosome copy numbers in a population of cells, as measured by quantitative polymerase chain reactions (qPCR), and retention rates, as measured by fluctuation analyses, were performed on a total of 62 individual wild type and mad2∆ mutant haploid and diploid clones. Wild type cells, both haploids and diploids, displayed phenotypically unique clone-to-clone differences: one group of 15 clones displayed low-copy numbers per cell and high retention rates, were 1 clone was found to have undergone a genomic integration event, and the second group of 15 clones displayed high copy numbers per cell and low retention rates, with the latter values being consistent with the previously published results where only a single clone had been measured. These chromosome states were observed to be unstable when propagated for 10 days under selection, where high copy-low retention rate clones evolved into low copy-high retention rate clones, but no evidence for integration events was observed. By contrast, mad2∆ haploid and mad2∆/mad2∆ diploids displayed a suppression of the clone-to-clone differences, where 20 out of 21 clones had mid-level artificial linear chromosome copy numbers per cell, but maintained elevated chromosome retention rates. The elevated levels in retention rates in mad2∆ and mad2∆/mad2∆ cells were also maintained even in the absence of selection during growth over 3 days. MAD2/mad2∆ heterozygous diploids displayed multiple clonal groups: 4 with low copy numbers, 5 with mid-level copy numbers, and 1 with a high copy number of artificial linear chromosomes, but all 10 clones uniformly displayed low retention rates. Our observations reveal that MAD2 function contributes to the ability of yeast cells to maintain a high number of artificial linear chromosomes per cell in some clones, but, counter-intuitively, mad2∆ suppresses clone-to-clone differences and leads to an improvement in artificial linear chromosome retention rates yielding a more uniform and stable clonal population with mid-level chromosome copy numbers per cell.
- Published
- 2020
- Full Text
- View/download PDF
41. Secretome of Hypoxic Endothelial Cells Stimulates Bone Marrow-Derived Mesenchymal Stem Cells to Enhance Alternative Activation of Macrophages
- Author
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Kang-Ju Chou, Chih-Yang Hsu, Chien-Wei Huang, Hsin-Yu Chen, Shih-Hsiang Ou, Chien-Liang Chen, Po-Tsang Lee, and Hua-Chang Fang
- Subjects
mesenchymal stem cells ,hematopoietic cell E- and L-selectin ligand ,hypoxic endothelial cells ,alternative macrophage polarization ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
We intended to explore the cellular interaction between mesenchymal stem cells (MSCs) and injured endothelial cells leading to macrophage alternative polarization in healing kidney ischemic reperfusion injury. In vivo, the amounts of recruited macrophages were significantly mitigated by MSCs in the injured tissues, especially in the group using hematopoietic cell E- and L-selectin ligand (HCELL)-positive MSCs. Compared to controls, MSCs also enhanced expression of CD206 and CD163, which was further enhanced by HCELL expression. In vitro, analysis of cytokines involving macrophage polarization showed IL-13 rather than IL-4 from MSCs agreed with expression of macrophage CD206 in the presence of hypoxic endothelial cells. Among them, HCELL-positive MSCs in contact with hypoxic endothelial cells produced the greatest response, which were reduced without HCELL or using a transwell to prevent cell contact. With blockade of the respective cytokine, downregulated MSCs secretion of IL-13 and CD206 expression were observed using inhibitors of IFN-γ and TNF-α, but not using those of TGF-β and NO. With IFN-γ and TNF-α, MSCs IL-13 secretion and CD206 expression were upregulated. In conclusion, hypoxia induces endothelial cells producing multiple cytokines. Among them, IFN-γ and TNF-α that stimulate MSCs to secrete IL-13 but not IL-4, leading to alternative polarization.
- Published
- 2020
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- View/download PDF
42. Characterization of a Sequential UV Photolysis-Biodegradation Process for Treatment of Decabrominated Diphenyl Ethers in Sorbent/Water Systems
- Author
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Yi-Tang Chang, Wei-Liang Chao, Hsin-Yu Chen, Hui Li, and Stephen A. Boyd
- Subjects
decabrominated diphenyl ether ,emerging contaminant ,sequential photolysis- microbial biodegradation ,PBDE congeners ,Achromobacter spp. ,Biology (General) ,QH301-705.5 - Abstract
Decabrominated diphenyl ether (BDE-209) is a primary component of the brominated flame retardants used in a variety of industrial and domestic applications. BDE-209 bioaccumulates in aquatic organisms and has been identified as an emerging contaminant that threatens human and ecosystem health. Sequential photolysis-microbial biodegradation processes were utilized here to treat BDE-209 in clay- or soil-water slurries. The removal efficiency of BDE-209 in the clay-water slurries was high; i.e., 96.5%, while that in the soil-water slurries was minimal. In the clay-water slurries the first order rate constants for the UV photolysis and biodegradation of BDE-209 were 0.017 1/day and 0.026 1/day, respectively. UV wavelength and intensity strongly influenced the BDE-209 photolysis and the subsequent biodegradation of photolytic products. Facultative chemotrophic bacteria, including Acidovorax spp., Pseudomonas spp., Novosphingobium spp. and Sphingomonas spp., were the dominant members of the bacterial community (about 71%) at the beginning of the biodegradation; many of these organisms have previously been shown to biodegrade BDE-209 and other polybrominated diphenyl ether (PBDE) congeners. The Achromobacter sp. that were isolated (NH-2; NH-4; NH-6) were especially effective during the BDE-209 degradation. These results indicated the effectiveness of the sequential UV photolysis and biodegradation for treating certain BDE-209-contaminated solids; e.g., clays; in bioreactors containing such solids as aqueous slurries. Achieving a similar treatment effectiveness for more heterogeneous solids containing natural organic matter, e.g., surface solids, appears to be significantly more difficult. Further investigations are needed in order to understand the great difference between the clay-water or soil-water slurries.
- Published
- 2020
- Full Text
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43. Peptide inhibitors of the anaphase promoting-complex that cause sensitivity to microtubule poison.
- Author
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Scott C Schuyler, Yueh-Fu Olivia Wu, Hsin-Yu Chen, Yi-Shan Ding, Chia-Jung Lin, Yu-Ting Chu, Ting-Chun Chen, Louis Liao, Wei-Wei Tsai, Anna Huang, Lin-Ing Wang, Ting-Wei Liao, Jia-Hua Jhuo, and Vivien Cheng
- Subjects
Medicine ,Science - Abstract
There is an interest in identifying Anaphase Promoting-Complex/Cyclosome (APC/C) inhibitors that lead to sensitivity to microtubule poisons as a strategy for targeting cancer cells. Using budding yeast Saccharomyces cerevisiae, peptides derived from the Mitotic Arrest Deficient 2 (Mad2)-binding motif of Cell Division Cycle 20 (Cdc20) were observed to inhibit both Cdc20- and CDC20 Homology 1 (Cdh1)-dependent APC/C activity. Over expression of peptides in vivo led to sensitivity to a microtubule poison and, in a recovery from a microtubule poison arrest, delayed degradation of yeast Securin protein Precocious Dissociation of Sisters 1 (Pds1). Peptides with mutations in the Cdc20 activating KILR-motif still bound APC/C, but lost the ability to inhibit APC/C in vitro and lost the ability to induce sensitivity to a microtubule poison in vivo. Thus, an APC/C binding and activation motif that promotes mitotic progression, namely the Cdc20 KILR-motif, can also function as an APC/C inhibitor when present in excess. Another activator for mitotic progression after recovery from microtubule poison is p31comet, where a yeast predicted open-reading frame YBR296C-A encoding a 39 amino acid predicted protein was identified by homology to p31comet, and named Tiny Yeast Comet 1 (TYC1). Tyc1 over expression resulted in sensitivity to microtubule poison. Tyc1 inhibited both APC/CCdc20 and APC/CCdh1 activities in vitro and bound to APC/C. A homologous peptide derived from human p31comet bound to and inhibited yeast APC/C demonstrating evolutionary retention of these biochemical activities. Cdc20 Mad2-binding motif peptides and Tyc1 disrupted the ability of the co-factors Cdc20 and Cdh1 to bind to APC/C, and co-over expression of both together in vivo resulted in an increased sensitivity to microtubule poison. We hypothesize that Cdc20 Mad2-binding motif peptides, Tyc1 and human hp31 peptide can serve as novel molecular tools for investigating APC/C inhibition that leads to sensitivity to microtubule poison in vivo.
- Published
- 2018
- Full Text
- View/download PDF
44. Viewing Angle of Binary Neutron Star Mergers
- Author
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Hsin-Yu Chen, Salvatore Vitale, and Ramesh Narayan
- Subjects
Physics ,QC1-999 - Abstract
The joint detection of the gravitational wave (GW) GW170817 and its electromagnetic (EM) counterparts GRB170817A and kilonova AT 2017gfo has triggered extensive study of the EM emission of binary neutron star mergers. A parameter which is common to and plays a key role in both the GW and the EM analyses is the viewing angle of the binary’s orbit. If a binary is viewed from different angles, the amount of GW energy changes (implying that orientation and distance are correlated) and the EM signatures can vary, depending on the structure of the emission. Information about the viewing angle of the binary orbital plane is therefore crucial to the interpretation of both the GW and the EM data and can potentially be extracted from either side. In the first part of this study, we present a systematic analysis of how well the viewing angle of binary neutron stars can be measured from the GW data. We show that if the sky position and the redshift of the binary can be identified via the EM counterpart and an associated host galaxy, then for 50% of the systems the viewing angle can be constrained to ≤7° uncertainty from the GW data, independent of electromagnetic emission models. On the other hand, if no redshift measurement is available, the measurement of the viewing angle with GWs alone is not informative, unless the true viewing angle is close to 90°. This holds true even if the sky position is measured independently. Then, we consider the case where some constraints on the viewing angle can be placed from the EM data themselves. We show that the EM measurements can then be used in the analysis of GW data to improve the precision of the luminosity distance, and hence of the Hubble constant, by a factor of 2–3.
- Published
- 2019
- Full Text
- View/download PDF
45. Skewness-aware Boosting Regression Trees for Customer Contribution Prediction in Financial Precision Marketing.
- Author
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Hsin-Yu Chen, Cheng-Te Li, and Ting-Yu Chen
- Published
- 2024
- Full Text
- View/download PDF
46. Vascularized Lymph Node Flap Transfer and Lymphovenous Anastomosis for Klippel-Trenaunay Syndrome with Congenital Lymphedema
- Author
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Shan Shan Qiu, MD, Hsin-Yu Chen, MD, and Ming-Huei Cheng, MD, MBA
- Subjects
Surgery ,RD1-811 - Abstract
Summary: A female patient with Klippel-Trenaunay syndrome, including hypertrophic bone and soft tissue in the forelimbs, bilateral lower limbs lymphedema, port-wine stains, and superficial veins of Servelle, was presented. The diagnosis of lymphedema was confirmed by lymphoscintigraphy and indocyanine green lymphography. The novel treatments consisted of vascularized lymph node transplantation to the left lymphedematous extremity and lymphovenous anastomosis to the right lymphedematous extremity. Significant improvements in subjective and objective clinical outcome were observed early in the postoperative period with continued improvements during the follow-up period.
- Published
- 2014
- Full Text
- View/download PDF
47. Huge Primary Vaginal Stone in a Recumbent Woman
- Author
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Chen-Ju Lin, Chih-Ping Chen, Chia-Hsun Wu, and Hsin-Yu Chen
- Subjects
calculi ,vaginal foreign body ,vaginal stone ,Gynecology and obstetrics ,RG1-991 - Abstract
Objective: Vaginal stones are rare and primary vaginal stones are extremely rare. A primary vaginal stone originating from urinary stasis in the vagina may be due to anatomic abnormalities, vaginal outlet obstruction, infection, or vesicovaginal fistulae, while secondary vaginal stones result from crystallization of urinary constituents around a foreign body in the vagina. Case Report: This 43-year-old female had cerebral palsy due to tuberculosis meningitis when she was 3 years old. She had been bedridden with urinary and fecal incontinence since then. She was admitted to our medical ward due to acute abdominal distension with poor appetite and weight loss. On arrival, leukocytosis with dehydration was noted and medical treatment was given initially. Imaging studies showed stool impaction with abdominal ileus and a huge calcified density measuring 10 cm in diameter in the pelvis. Exploratory laparotomy showed that the mass was in the vagina. A laminated and pear-shaped mass was removed through an incision in the anterior vaginal cuff. Pathologic examination showed lithiasis composed of calcification mixed with fibrinous exudates and fragments of reactive squamous epithelium. The postoperative course was smooth with uneventful convalescence and she was discharged and doing well at the time of writing. Conclusion: Although vaginal stones are very rare, they may be formed in recumbent women due to urinary stasis, and the calculi may cause obstruction of the bowel or urinary tract.
- Published
- 2005
- Full Text
- View/download PDF
48. Analysis of Tweet Sentiment and Propagation Graph of Twitter Users.
- Author
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Chu-Hsing Lin, Yan-Xiang Chen, Yun-Yang Tsai, and Hsin-Yu Chen
- Published
- 2023
- Full Text
- View/download PDF
49. Quality Aware Sleep Stage Classification over RIP Signals with Persistence Diagrams.
- Author
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Hsin-Yu Chen, Hau-Tieng Wu, and Cheng-Yao Chen
- Published
- 2023
- Full Text
- View/download PDF
50. Semi-supervised Curriculum Ensemble Learning for Financial Precision Marketing.
- Author
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Hsin-Yu Chen, Cheng-Te Li, and Ting-Yu Chen
- Published
- 2023
- Full Text
- View/download PDF
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