1. Proteome remodeling in the Mycobacterium tuberculosis PknG knockout: Molecular evidence for the role of this kinase in cell envelope biogenesis and hypoxia response
- Author
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Wehenkel, Anne Marie, Lima, Analía, Leyva, Alejandro, Rivera, Bernardina, Portela, María Magdalena, Gil, Magdalena, Cascioferro, Alessandro, Lisa, María-Natalia, Wehenkel, Annemarie, Bellinzoni, Marco, Carvalho, Paulo, Batthyány, Carlos, Alvarez, María, Brosch, Roland, Alzari, Pedro, Durán, Rosario, Microbiologie structurale - Structural Microbiology (Microb. Struc. (UMR_3528 / U-Pasteur_5)), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Institut Pasteur de Montevideo, Réseau International des Instituts Pasteur (RIIP), Instituto de Investigaciones Biológicas Clemente Estable [Montevideo] (IIBCE), Universidad de la República Uruguay, Pathogénomique mycobactérienne intégrée - Integrated Mycobacterial Pathogenomics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Instituto de Biología Molecular y Celular de Rosario [Rosario] (IBR), Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET)-Universidad Nacional de Rosario [Santa Fe], Fiocruz Paraná - Instituto Carlos Chagas / Carlos Chagas Institute [Curitiba, Brésil] (ICC), Fundação Oswaldo Cruz (FIOCRUZ), Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Universidad de la República [Montevideo] (UCUR), This work was supported by grants from Agencia Nacional de Investigación e Innovación, Uruguay (ANII, FCE_3_2013_1_100358 and FCE_1_2014_1_104045) and FOCEM - Fondo para la Convergencia Estructural del Mercosur (COF 03/11). MG and BR were supported by fellowships from ANII [POS_NAC_2012_1_8824, POS_NAC_2015_1_109755, POS_FCE_2015_1_1005186]. AC and RB were supported by the Agence Nationale pour la Recherche (France)., Universidad de la República [Montevideo] (UDELAR), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), and Fundação Oswaldo Cruz / Oswaldo Cruz Foundation (FIOCRUZ)
- Subjects
0301 basic medicine ,Proteomics ,Tuberculosis ,Proteome ,[PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph] ,Quantitative proteomics ,Mutant ,Biophysics ,Serine threonine protein kinase ,PknG ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Protein Serine-Threonine Kinases ,Biochemistry ,Mycobacterium tuberculosis ,03 medical and health sciences ,Bacterial Proteins ,medicine ,[CHIM.CRIS]Chemical Sciences/Cristallography ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Hrp-1 ,Serine/Threonine protein kinase ,Hypoxia ,Protein kinase A ,ComputingMilieux_MISCELLANEOUS ,Biological Phenomena ,030304 developmental biology ,Msl3 ,0303 health sciences ,030102 biochemistry & molecular biology ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,biology ,030306 microbiology ,Kinase ,medicine.disease ,biology.organism_classification ,3. Good health ,Cell biology ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,030104 developmental biology ,Mas ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,Biogenesis ,Intracellular - Abstract
International audience; Mycobacterium tuberculosis, the etiological agent of tuberculosis, is among the deadliest human pathogens. One of M. tuberculosis's pathogenic hallmarks is its ability to persist in a dormant state in the host. Thus, this pathogen has developed mechanisms to withstand stressful conditions found in the human host. Particularly, the Ser/Thr-protein kinase PknG has gained relevance since it regulates nitrogen metabolism and facilitates bacterial survival inside macrophages. Nevertheless, the molecular mechanisms underlying these effects are far from being elucidated. To further investigate these issues, we performed quantitative proteomic analyses of protein extracts from M. tuberculosis H37Rv and a mutant lacking pknG. We found that in the absence of PknG the mycobacterial proteome was remodeled since 5.7% of the proteins encoded by M. tuberculosis presented significant changes in its relative abundance compared with the wild-type. The main biological processes affected by pknG deletion were cell envelope components biosynthesis and response to hypoxia. Thirteen DosR-regulated proteins were underrepresented in the pknG deletion mutant, including Hrp-1, which was 12.5-fold decreased according to Parallel Reaction Monitoring experiments. Altogether, our results allow us to postulate that PknG regulation of bacterial adaptation to stress conditions might be an important mechanism underlying its reported effect on intracellular bacterial survival. SIGNIFICANCE: PknG is a Ser/Thr kinase from Mycobacterium tuberculosis with key roles in bacterial metabolism and bacterial survival within the host. However, at present the molecular mechanisms underlying these functions remain largely unknown. In this work, we evaluate the effect of pknG deletion on M. tuberculosis proteome using different approaches. Our results clearly show that the global proteome was remodeled in the absence of PknG and shed light on new molecular mechanism underlying PknG role. Altogether, this work contributes to a better understanding of the molecular bases of the adaptation of M. tuberculosis, one of the most deadly human pathogens, to its host.
- Published
- 2021