96 results on '"Hristozov D"'
Search Results
2. CEC05-05: Using Integrated Approaches to Testing and Assessment to streamline Grouping and Read-Across of solid nanomaterials
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Stone, V., primary, Oomen, A., additional, Johnston, H., additional, Hristozov, D., additional, Schmidt, O., additional, Stoeger, T., additional, Aparicio, S., additional, Vogel, U., additional, Wohlleben, W., additional, and Murphy, F., additional
- Published
- 2023
- Full Text
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3. Challenges on the toxicological predictions of engineered nanoparticles
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Ribeiro, A.R., Leite, P.E., Falagan-Lotsch, P., Benetti, F., Micheletti, C., Budtz, H.C., Jacobsen, N.R., Lisboa-Filho, P.N., Rocha, L.A., Kühnel, D., Hristozov, D., and Granjeiro, J.M.
- Published
- 2017
- Full Text
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4. Identification of the safe(r) by design alternatives for nanosilver-enabled wound dressings
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Cazzagon, V., primary, Giubilato, E., additional, Bonetto, A., additional, Blosi, M., additional, Zanoni, I., additional, Costa, A. L., additional, Vineis, C., additional, Varesano, A., additional, Marcomini, A., additional, Hristozov, D., additional, Semenzin, E., additional, and Badetti, E., additional
- Published
- 2022
- Full Text
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5. RENATE : a pseudo-retrosynthetic tool for synthetically accessible de novo design
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Ghiandoni, G.M., Bodkin, M.J., Chen, B., Hristozov, D., Wallace, J.E.A., Webster, J., and Gillet, V.J.
- Abstract
Reaction-based de novo design refers to the generation of synthetically accessible molecules using transformation rules extracted from known reactions in the literature. In this context, we have previously described the extraction of reaction vectors from a reactions database and their coupling with a structure generation algorithm for the generation of novel molecules from a starting material. An issue when designing molecules from a starting material is the combinatorial explosion of possible product molecules that can be generated, especially for multistep syntheses. Here, we present the development of RENATE, a reaction-based de novo design tool, which is based on a pseudo-retrosynthetic fragmentation of a reference ligand and an inside-out approach to de novo design. The reference ligand is fragmented; each fragment is used to search for similar fragments as building blocks; the building blocks are combined into products using reaction vectors; and a synthetic route is suggested for each product molecule. The RENATE methodology is presented followed by a retrospective validation to recreate a set of approved drugs. Results show that RENATE can generate very similar or even identical structures to the corresponding input drugs, hence validating the fragmentation, search, and design heuristics implemented in the tool.
- Published
- 2022
6. Bayesian based similarity assessment of nanomaterials to inform grouping
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Tsiliki, G, Ag Seleci, D, Zabeo, A, Basel, G, Hristozov, D, and Peijenburg, W
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- 2022
7. Developing Integrated Approaches for Testing and Assessment (IATAs) in order to support nanomaterial safety
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Powell, L.G., Gillies, S., Fernandes, T.F., Murphy, F., Giubilato, E., Cazzagon, V., Hristozov, D., Pizzol, L., Blosi, M., Costa, A.L., Prina-Mello, A., Bouwmeester, H., Sarimveis, H., Janer, G., Stone, V., Powell, L.G., Gillies, S., Fernandes, T.F., Murphy, F., Giubilato, E., Cazzagon, V., Hristozov, D., Pizzol, L., Blosi, M., Costa, A.L., Prina-Mello, A., Bouwmeester, H., Sarimveis, H., Janer, G., and Stone, V.
- Abstract
Due to the unique characteristics of nanomaterials (NM) there has been an increase in their use in nanomedicines and innovative medical devices (MD). Although large numbers of NMs have now been developed, comprehensive safety investigations are still lacking. Current gaps in understanding the potential mechanisms of NM-induced toxicity can make it challenging to determine the safety testing necessary to support inclusion of NMs in MD applications. This article provides guidance for implementation of pre-clinical tailored safety assessment strategies with the aim to increase the translation of NMs from bench development to clinical use. Integrated Approaches to Testing and Assessment (IATAs) are a key tool in developing these strategies. IATAs follow an iterative approach to answer a defined question in a specific regulatory context to guide the gathering of relevant information for safety assessment, including existing experimental data, integrated with in silico model predictions where available and appropriate, and/or experimental procedures and protocols for generating new data to fill gaps. This allows NM developers to work toward current guidelines and regulations, while taking NM specific considerations into account. Here, an example IATA for NMs with potential for direct blood contact was developed for the assessment of haemocompatibility. This example IATA brings together the current guidelines for NM safety assessment within a framework that can be used to guide information and data gathering for the safety assessment of intravenously injected NMs. Additionally, the decision framework underpinning this IATA has the potential to be adapted to other testing needs and regulatory contexts.
- Published
- 2022
8. Developing Integrated Approaches for Testing and Assessment (IATAs) in order to support nanomaterial safety
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Powell, L. G., primary, Gillies, S., additional, Fernandes, T. F., additional, Murphy, F., additional, Giubilato, E., additional, Cazzagon, V., additional, Hristozov, D., additional, Pizzol, L., additional, Blosi, M., additional, Costa, A. L., additional, Prina-Mello, A., additional, Bouwmeester, H., additional, Sarimveis, H., additional, Janer, G., additional, and Stone, V., additional
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- 2022
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9. Occupational risk of nano-biomaterials: Assessment of nano-enabled magnetite contrast agent using the BIORIMA Decision Support System
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Cazzagon, V., primary, Giubilato, E., additional, Pizzol, L., additional, Ravagli, C., additional, Doumett, S., additional, Baldi, G., additional, Blosi, M., additional, Brunelli, A., additional, Fito, C., additional, Huertas, F., additional, Marcomini, A., additional, Semenzin, E., additional, Zabeo, A., additional, Zanoni, I., additional, and Hristozov, D., additional
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- 2022
- Full Text
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10. Enhancing reaction-based de novo design using a multi-label reaction class recommender
- Author
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Ghiandoni, G.M., Bodkin, M.J., Chen, B., Hristozov, D., Wallace, J.E.A., Webster, J., and Gillet, V.J.
- Abstract
Reaction-based de novo design refers to the in-silico generation of novel chemical structures by combining reagents using structural transformations derived from known reactions. The driver for using reaction-based transformations is to increase the likelihood of the designed molecules being synthetically accessible. We have previously described a reaction-based de novo design method based on reaction vectors which are transformation rules that are encoded automatically from reaction databases. A limitation of reaction vectors is that they account for structural changes that occur at the core of a reaction only, and they do not consider the presence of competing functionalities that can compromise the reaction outcome. Here, we present the development of a Reaction Class Recommender to enhance the reaction vector framework. The recommender is intended to be used as a filter on the reaction vectors that are applied during de novo design to reduce the combinatorial explosion of in-silico molecules produced while limiting the generated structures to those which are most likely to be synthesisable. The recommender has been validated using an external data set extracted from the recent medicinal chemistry literature and in two simulated de novo design experiments. Results suggest that the use of the recommender drastically reduces the number of solutions explored by the algorithm while preserving the chance of finding relevant solutions and increasing the global synthetic accessibility of the designed molecules.
- Published
- 2020
11. Development and application of a data-driven reaction classification model : comparison of an electronic lab notebook and the medicinal chemistry literature
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Ghiandoni, G.M., Bodkin, M.J., Chen, B., Hristozov, D., Wallace, J.E.A., Webster, J., and Gillet, V.
- Abstract
Reaction classification has often been considered an important task for many different applications, and has traditionally been accomplished using hand-coded rule-based approaches. However, the availability of large collections of reactions enables data-driven approaches to be developed. We present the development and validation of a 336-class machine learning-based classification model integrated within a Conformal Prediction (CP) framework in order to associate reaction class predictions with confidence estimations. We also propose a data-driven approach for 'dynamic' reaction fingerprinting to maximise the effectiveness of reaction encoding, as well as developing a novel reaction classification system that organises labels in four hierarchical levels (SHREC: Sheffield Hierarchical REaction Classification). We show that the performance of the CP augmented model can be improved by defining confidence thresholds to detect predictions that are less likely to be false. For example, the external validation of the model reports 95% of predictions as correct by filtering out less than 15% of the uncertain classifications. The application of the model is demonstrated by classifying two reaction datasets: one extracted from an industrial ELN and the other from the medicinal chemistry literature. We show how confidence estimations and class compositions across different levels of information can be used to gain immediate insights on the nature of reaction collections and hidden relationship between reaction classes.
- Published
- 2019
12. Environmental impacts by fragments released from nanoenabled products A multiassay, multimaterial exploration by the SUN approach
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von der Kammer, Frank [0000-0002-8653-6687], Amorim, Mónica J. B., Lin, S., Schlich, K., Navas Antón, José María, Brunelli, Andrea, Neubauer, N., Vilsmeier, K., Costa, Anna L., Gondikas, A., Xia, T., Galbis-Martínez, L., Badetti, Elena, Marcomini, Antonio, Hristozov, D., von der Kammer, Frank, Hund-Rinke, K., Scott-Fordsmand, J. J., Nel, A., Wohlleben, W., von der Kammer, Frank [0000-0002-8653-6687], Amorim, Mónica J. B., Lin, S., Schlich, K., Navas Antón, José María, Brunelli, Andrea, Neubauer, N., Vilsmeier, K., Costa, Anna L., Gondikas, A., Xia, T., Galbis-Martínez, L., Badetti, Elena, Marcomini, Antonio, Hristozov, D., von der Kammer, Frank, Hund-Rinke, K., Scott-Fordsmand, J. J., Nel, A., and Wohlleben, W.
- Abstract
Nanoenabled products (NEPs) have numerous outdoor uses in construction, transportation or consumer scenarios, and there is evidence that their fragments are released in the environment at low rates. We hypothesized that the lower surface availability of NEPs fragment reduced their environmental effects with respect to pristine nanomaterials. This hypothesis was explored by testing fragments generated by intentional micronisation (“the SUN approach”; Nowack et al. Meeting the Needs for Released Nanomaterials Required for Further Testing: The SUN Approach. The NEPs were composed of four matrices (epoxy, polyolefin, polyoxymethylene, and cement) with up to 5% content of three nanomaterials (carbon nanotubes, iron oxide, and organic pigment). Regardless of the type of nanomaterial or matrix used, it was observed that nanomaterials were only partially exposed at the NEP fragment surface, indicating that mostly the intrinsic and extrinsic properties of the matrix drove the NEP fragment toxicity. Ecotoxicity in multiple assays was done covering relevant media from terrestrial to aquatic, including sewage treatment plant (biological activity), soil worms (Enchytraeus crypticus), and fish (zebrafish embryo and larvae and trout cell lines). We designed the studies to explore the possible modulation of ecotoxicity by nanomaterial additives in plastics/polymer/cement, finding none. The results support NEPs grouping by the matrix material regarding ecotoxicological effect during the use phase. Furthermore, control results on nanomaterial-free polymer fragments representing microplastic had no significant adverse effects up to the highest concentration tested.
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- 2018
13. The essential elements of a risk governance framework for current and future nanotechnologies
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Stone, V., Führer, M., Feindt, P.H., Bouwmeester, H., Linkov, I., Sabella, S., Murphy, F., Bizer, K., Tran, L., Agerstrand, M., Fito, C., Andersen, T., Anderson, D., Bergamaschi, E., Cherrie, J.W., Cowan, S., Dalemcourt, J.-F., Faure, Michael, Gabbert, S., Gajewicz, A., Fernandes, T.F., Hristozov, D., Johnston, H.J., Lansdown, T.C., Linder, S., Marvin, H.J.P., Mullins, M., Purnhagen, K.P., Puzyn, T., Sanchez Jimenez, A., Scott-Fordsmand, J.J., Streftaris, G., van Tongeren, M., Voelcker, N.H., Voyiatzis, G., Yannopoulos, S.N., Poortvliet, P.M., Stone, V., Führer, M., Feindt, P.H., Bouwmeester, H., Linkov, I., Sabella, S., Murphy, F., Bizer, K., Tran, L., Agerstrand, M., Fito, C., Andersen, T., Anderson, D., Bergamaschi, E., Cherrie, J.W., Cowan, S., Dalemcourt, J.-F., Faure, Michael, Gabbert, S., Gajewicz, A., Fernandes, T.F., Hristozov, D., Johnston, H.J., Lansdown, T.C., Linder, S., Marvin, H.J.P., Mullins, M., Purnhagen, K.P., Puzyn, T., Sanchez Jimenez, A., Scott-Fordsmand, J.J., Streftaris, G., van Tongeren, M., Voelcker, N.H., Voyiatzis, G., Yannopoulos, S.N., and Poortvliet, P.M.
- Abstract
Societies worldwide are investing considerable resources into the safe development and use of nanomaterials. Although each of these protective efforts is crucial for governing the risks of nanomaterials, they are insufficient in isolation. What is missing is a more integrative governance approach that goes beyond legislation. Development of this approach must be evidence based and involve key stakeholders to ensure acceptance by end users. The challenge is to develop a framework that coordinates the variety of actors involved in nanotechnology and civil society to facilitate consideration of the complex issues that occur in this rapidly evolving research and development area. Here, we propose three sets of essential elements required to generate an effective risk governance framework for nanomaterials. (1) Advanced tools to facilitate risk-based decision making, including an assessment of the needs of users regarding risk assessment, mitigation, and transfer. (2) An integrated model of predicted human behavior and decision making concerning nanomaterial risks. (3) Legal and other (nano-specific and general) regulatory requirements to ensure compliance and to stimulate proactive approaches to safety. The implementation of such an approach should facilitate and motivate good practice for the various stakeholders to allow the safe and sustainable future development of nanotechnology.
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- 2018
14. The Essential Elements of a Risk Governance Framework for Current and Future Nanotechnologies
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Stone, V. (Vicki), Führ, M. (Martin), Feindt, P.H. (Peter H.), Bouwmeester, H. (Hans), Linkov, I. (Igor), Sabella, S. (Stefania), Murphy, F. (Finbarr), Bizer, K. (Kilian), Tran, L. (Lang), Ågerstrand, M. (Marlene), Fito, C. (Carlos), Andersen, T. (Torben), Anderson, D. (Diana), Bergamaschi, E. (Enrico), Cherrie, J.W. (John W.), Cowan, S. (Sue), Dalemcourt, J.-F. (Jean-Francois), Faure, M.G. (Michael), Gabbert, S. (Silke), Gajewicz, A. (Agnieszka), Fernandes, T.F. (Teresa F.), Hristozov, D. (Danail), Johnston, H.J. (Helinor J.), Lansdown, T.C. (Terry C.), Linder, S. (Stefan), Marvin, H.J.P. (Hans J. P.), Mullins, M. (Martin), Purnhagen, K.P. (Kai), Puzyn, T. (Tomasz), Sanchez Jimenez, A. (Araceli), Scott-Fordsmand, J.J. (Janeck J.), Streftaris, G. (George), Tongeren, M. van, Voelcker, N.H. (Nicolas H.), Voyiatzis, G. (George), Yannopoulos, S.N. (Spyros N.), Poortvliet, P.M. (P. Marijn), Stone, V. (Vicki), Führ, M. (Martin), Feindt, P.H. (Peter H.), Bouwmeester, H. (Hans), Linkov, I. (Igor), Sabella, S. (Stefania), Murphy, F. (Finbarr), Bizer, K. (Kilian), Tran, L. (Lang), Ågerstrand, M. (Marlene), Fito, C. (Carlos), Andersen, T. (Torben), Anderson, D. (Diana), Bergamaschi, E. (Enrico), Cherrie, J.W. (John W.), Cowan, S. (Sue), Dalemcourt, J.-F. (Jean-Francois), Faure, M.G. (Michael), Gabbert, S. (Silke), Gajewicz, A. (Agnieszka), Fernandes, T.F. (Teresa F.), Hristozov, D. (Danail), Johnston, H.J. (Helinor J.), Lansdown, T.C. (Terry C.), Linder, S. (Stefan), Marvin, H.J.P. (Hans J. P.), Mullins, M. (Martin), Purnhagen, K.P. (Kai), Puzyn, T. (Tomasz), Sanchez Jimenez, A. (Araceli), Scott-Fordsmand, J.J. (Janeck J.), Streftaris, G. (George), Tongeren, M. van, Voelcker, N.H. (Nicolas H.), Voyiatzis, G. (George), Yannopoulos, S.N. (Spyros N.), and Poortvliet, P.M. (P. Marijn)
- Abstract
Societies worldwide are investing considerable resources into the safe development and use of nanomaterials. Although each of these protective efforts is crucial for governing the risks of nanomaterials, they are insufficient in isolation. What is missing is a more integrative governance approach that goes beyond legislation. Development of this approach must be
- Published
- 2017
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15. Improving the prediction of environmental fate of engineered nanomaterials by fractal modelling
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Avilov, S., primary, Lamon, L., additional, Hristozov, D., additional, and Marcomini, A., additional
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- 2017
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16. A unified framework for nanosafety is needed
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Scott-Fordsmand, Janeck J., Pozzi-Mucelli, S., Tran, L., Aschberger, K., Sabella, S., Vogel, U., Poland, C., Balharry, D., Fernandes, T., Gottardo, S., Hankin, S., Hartl, M.G.J., Hartmann, N.B., Hristozov, D., Hund-Rinke, K., Johnston, H., Marcomini, A., Panzer, O., Roncato, D., Saber, A.T., Wallin, H., and Stone, V.
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- 2014
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17. Exploring potency and selectivity receptor antagonist profiles using a multilabe classification approach: the human adenosine receptor as a key study
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Michielan, L., Federico, Stephanie, Terfloth, L., Hristozov, D., Cacciari, B., Klotz, K. N., Spalluto, Giampiero, Gasteiger, J., Moro, S., Michielan, L., Federico, Stephanie, Terfloth, L., Hristozov, D., Cacciari, B., Klotz, K. N., Spalluto, Giampiero, Gasteiger, J., and Moro, S.
- Subjects
adenosine ,receptor ,selectivity ,receptors - Published
- 2009
18. Concern-driven integrated approaches to nanomaterial testing and assessment - report of the NanoSafety Cluster Working Group
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Oomen, Ag, Bos, Pm, Fernandes, Tf, Hund Rinke, K, Boraschi, D, Byrne, Hj, Aschberger, K, Gottardo, S, von der Kammer, F, Kühnel, D, Hristozov, D, Marcomini, A, Migliore, Lucia, Scott Fordsmand, J, Wick, P, and Landsiedel, R.
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Nanosafety - Published
- 2014
19. COSMOS DB as an international share point for exchanging regulatory and toxicity data of cosmetics ingredients and related substances
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Yang, C., primary, Hristozov, D., additional, Tarkhov, A., additional, Kleinöder, T., additional, Boyer, I., additional, Cronin, M., additional, Fioravanzo, E., additional, Kim, H., additional, Heldreth, B., additional, Mostrag-Szylchtying, A., additional, Rathman, J., additional, Richarz, A., additional, Schwab, C., additional, Vitcheva, V., additional, and Worth, A., additional
- Published
- 2015
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20. Concern-driven integrated approaches to nanomaterial testing and assessment – report of the NanoSafety Cluster Working Group 10
- Author
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Oomen, A.G., Bos, P.M.J., Fernandes, T.F., Hund-Rinke, K., Boraschi, D., Byrne, H.J., Aschberger, K., Gottardo, S., von der Kammer, F., Kühnel, Dana, Hristozov, D., Marcomini, A., Migliore, L., Scott-Fordsmand, J., Wick, P., Landsiedel, R., Oomen, A.G., Bos, P.M.J., Fernandes, T.F., Hund-Rinke, K., Boraschi, D., Byrne, H.J., Aschberger, K., Gottardo, S., von der Kammer, F., Kühnel, Dana, Hristozov, D., Marcomini, A., Migliore, L., Scott-Fordsmand, J., Wick, P., and Landsiedel, R.
- Abstract
Bringing together topic-related European Union (EU)-funded projects, the so-called “NanoSafety Cluster” aims at identifying key areas for further research on risk assessment procedures for nanomaterials (NM). The outcome of NanoSafety Cluster Working Group 10, this commentary presents a vision for concern-driven integrated approaches for the (eco-)toxicological testing and assessment (IATA) of NM. Such approaches should start out by determining concerns, i.e., specific information needs for a given NM based on realistic exposure scenarios. Recognised concerns can be addressed in a set of tiers using standardised protocols for NM preparation and testing. Tier 1 includes determining physico-chemical properties, non-testing (e.g., structure–activity relationships) and evaluating existing data. In tier 2, a limited set of in vitro and in vivo tests are performed that can either indicate that the risk of the specific concern is sufficiently known or indicate the need for further testing, including details for such testing. Ecotoxicological testing begins with representative test organisms followed by complex test systems. After each tier, it is evaluated whether the information gained permits assessing the safety of the NM so that further testing can be waived. By effectively exploiting all available information, IATA allow accelerating the risk assessment process and reducing testing costs and animal use (in line with the 3Rs principle implemented in EU Directive 2010/63/EU). Combining material properties, exposure, biokinetics and hazard data, information gained with IATA can be used to recognise groups of NM based upon similar modes of action. Grouping of substances in return should form integral part of the IATA themselves.Read More: http://informahealthcare.com/doi/abs/10.3109/17435390.2013.802387
- Published
- 2014
21. ITS-NANO - Prioritising nanosafety research to develop a stakeholder driven intelligent testing strategy
- Author
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Stone, V., Pozzi-Mucelli, S., Tran, L., Aschberger, K., Sabella, S., Vogel, U., Poland, C., Balharry, D., Fernandes, T., Gottardo, S., Hankin, S., Hartl, M. G. J., Hartmann, Nanna Isabella Bloch, Hristozov, D., Hund-Rinke, K., Johnston, H., Marcomini, A., Panzer, O., Roncato, D., Saber, A. T., Wallin, H., Scott-Fordsmand, J. J., Stone, V., Pozzi-Mucelli, S., Tran, L., Aschberger, K., Sabella, S., Vogel, U., Poland, C., Balharry, D., Fernandes, T., Gottardo, S., Hankin, S., Hartl, M. G. J., Hartmann, Nanna Isabella Bloch, Hristozov, D., Hund-Rinke, K., Johnston, H., Marcomini, A., Panzer, O., Roncato, D., Saber, A. T., Wallin, H., and Scott-Fordsmand, J. J.
- Abstract
BACKGROUND: To assess the risk of all nanomaterials (NMs) on a case-by-case basis is challenging in terms of financial, ethical and time resources. Instead a more intelligent approach to knowledge gain and risk assessment is required. METHODS: A framework of future research priorities was developed from the accorded opinion of experts covering all major stake holder groups (government, industry, academia, funders and NGOs). It recognises and stresses the major topics of physicochemical characterisation, exposure identification, hazard identification and modelling approaches as key components of the current and future risk assessment of NMs. RESULTS: The framework for future research has been developed from the opinions of over 80 stakeholders, that describes the research priorities for effective development of an intelligent testing strategy (ITS) to allow risk evaluation of NMs. In this context, an ITS is a process that allows the risks of NMs to be assessed accurately, effectively and efficiently, thereby reducing the need to test NMs on a case-by-case basis.For each of the major topics of physicochemical characterisation, exposure identification, hazard identification and modelling, key-priority research areas are described via a series of stepping stones, or hexagon diagrams structured into a time perspective. Importantly, this framework is flexible, allowing individual stakeholders to identify where their own activities and expertise are positioned within the prioritisation pathway and furthermore to identify how they can effectively contribute and structure their work accordingly. In other words, the prioritisation hexagon diagrams provide a tool that individual stakeholders can adapt to meet their own particular needs and to deliver an ITS for NMs risk assessment. Such an approach would, over time, reduce the need for testing by increasing the reliability and sophistication of in silico approaches.The manuscript includes an appra
- Published
- 2014
22. Web-based tool for fast qualitative analysis of the sterilization process for foods with an extended expiry date
- Author
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Madhzarova Stoyanka, Hristozov Daniel, and Mecheva Elena
- Subjects
Microbiology ,QR1-502 ,Physiology ,QP1-981 ,Zoology ,QL1-991 - Abstract
A digital calculator algorithm for F-effect calculation in an online environment is presented. The tool gives a value that analyzes the nature of the sterilization process in thermally processed foods. The obtained result is a reference to “F Soft” software for modelling the process with increasing or decreasing the retention time at reaching the required F-effect, ensuring microbiological stability and nutritional value, while preserving the taste qualities of the canned product in real time mode or when reading external data, creating an appropriate mode. The implementation of the web tool is done with PHP programming language and it provides a quick guideline for the quality of the production cycle of the product to be sterilized.
- Published
- 2023
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23. Evaluation of Oxidative Stress in Patients with Cancer
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Hristozov, D., primary, Gadjeva, V., additional, Vlaykova, T., additional, and Dimitrov, G., additional
- Published
- 2001
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24. ITS-NANO - en interessentdrevet intelligent forskningsstrategi for testning af nanomaterialer
- Author
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Saber, A. T., Vicki Stone, Pozzi-Mucelli, S., Tran, L., Aschberger, K., Sabella, S., Poland, C., Balharry, D., Fernandes, T., Gottardo, S., Hankin, S., Hartl, M. G. J., Nanna B. Hartmann, Hristozov, D., Hund-Rinke, K., Johnston, H., Marcomini, A., Panzer, O., Roncato, D., Wallin, H., Scott-Fordsmand, J. J., and Vogel, U.
25. Electrooptical automatic system for technological and ecological monitoring using a laser and fibre optics
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Petrakiev, A., primary, Hristozov, D., additional, Sultanova, N., additional, Dimitrov, I., additional, Georgieva, V., additional, and Krastev, K., additional
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26. Electrooptical automatic system for technological and ecological monitoring using a laser and fibre optics.
- Author
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Petrakiev, A., Hristozov, D., Sultanova, N., Dimitrov, I., Georgieva, V., and Krastev, K.
- Published
- 2000
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27. Common strategies and technologies for the ecosafety assessment and design of nanomaterials entering the marine environment
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Camilla Della Torre, Danail Hristozov, Martin Hassellöv, Valeria Matranga, Jérôme Labille, Francesco Dondero, Giada Frenzilli, Hunter S. Lenihan, Laura Canesi, Ilaria Corsi, Antonio Marcomini, Giovanni Libralato, Enrico Sabbioni, Annalisa Pinsino, Víctor F. Puntes, Gary N. Cherr, Department of Environmental Sciences 'G. Sarfatti', Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Collège de France (CdF (institution))-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), Department of Chemistry, University of Gothenburg (GU), Dipartimento di Biologia, Universita di Genova, Università di Genova, Centre IDEAS, University of Ca’ Foscari [Venice, Italy], Cell Stress and Environment Research Group, Consiglio Nazionale delle Ricerche [Roma] (CNR)-Istituto di Biomedicina e ImmunologiaMolecolare 'Alberto Monroy', Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Collège de France (CdF)-Institut national des sciences de l'Univers (INSU - CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), Corsi, I., Cherr, G. N., Lenihan, H. S., Labille, J., Hassellov, M., Canesi, L., Dondero, F., Frenzilli, G., Hristozov, D., Puntes, V., Della Torre, C., Pinsino, A., Libralato, Giovanni, Marcomini, A., Sabbioni, E., Matranga, V., Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Università degli studi di Genova = University of Genoa (UniGe), and National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR)-Istituto di Biomedicina e ImmunologiaMolecolare 'Alberto Monroy'
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UV-B RADIATION ,Settore MED/42 - Igiene Generale e Applicata ,Engineered nanomaterials ,General Physics and Astronomy ,Marine Biology ,Nanotechnology ,Biology ,SILVER NANOPARTICLES ,Key issues ,Physics and Astronomy (all) ,Engineering (all) ,METAL-OXIDE NANOPARTICLES ,Theoretical ,Models ,ENGINEERED NANOMATERIALS ,General Materials Science ,14. Life underwater ,Environmental planning ,Ecosystem ,SEA-URCHIN ,Settore CHIM/12 - Chimica dell'Ambiente e dei Beni Culturali ,ATOMIC-FORCE MICROSCOPY ,METAL-OXIDE NANOPARTICLES, MUSSEL MYTILUS-GALLOPROVINCIALIS, FULLERENE C-60 NANOPARTICLES, TITANIUM-DIOXIDE NANOPARTICLES, URCHIN PARACENTROTUS-LIVIDUS, ATOMIC-FORCE MICROSCOPY, UV-B RADIATION, SEA-URCHIN, SILVER NANOPARTICLES, ENGINEERED NANOMATERIALS ,MUSSEL MYTILUS-GALLOPROVINCIALIS ,Medicine (all) ,Aquatic ecosystem ,TITANIUM-DIOXIDE NANOPARTICLES ,General Engineering ,Models, Theoretical ,Nanostructures ,Materials Science (all) ,Variety (cybernetics) ,13. Climate action ,URCHIN PARACENTROTUS-LIVIDUS ,[SDE]Environmental Sciences ,FULLERENE C-60 NANOPARTICLES - Abstract
The widespread use of engineered nanomaterials (ENMs) in a variety of technologies and consumer products inevitably causes their release into aquatic environments and final deposition into the oceans. In addition, a growing number of ENM products are being developed specifically for marine applications, such as antifouling coatings and environmental remediation systems, thus increasing the need to address any potential risks for marine organisms and ecosystems. To safeguard the marine environment, major scientific gaps related to assessing and designing ecosafe ENMs need to be filled. In this Nano Focus, we examine key issues related to the state-of-the-art models and analytical tools being developed to understand ecological risks and to design safeguards for marine organisms.
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- 2014
28. Inflammation related to inhalation of nano and micron sized iron oxides: a systematic review.
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Moen A, Johnsen H, Hristozov D, Zabeo A, Pizzol L, Ibarrola O, Hannon G, Holmes S, Debebe Zegeye F, Vogel U, Prina Mello A, Zienolddiny-Narui S, and Wallin H
- Abstract
Inhalation exposure to iron oxide occurs in many workplaces and respirable aerosols occur during thermal processes (e.g. welding, casting) or during abrasion of iron and steel products (e.g. cutting, grinding, machining, polishing, sanding) or during handling of iron oxide pigments. There is limited evidence of adverse effects in humans specifically linked to inhalation of iron oxides. This contrasts to oxides of other metals used to alloy or for coating of steel and iron of which several have been classified as being hazardous by international and national agencies. Such metal oxides are often present in the air at workplaces. In general, iron oxides might therefore be regarded as low-toxicity, low-solubility (LTLS) particles, and are often considered to be nontoxic even if very high and prolonged inhalation exposures might result in diseases. In animal studies, such exposures lead to cancer, fibrosis and other diseases. Our hypothesis was that pulmonary-workplace exposure during manufacture and handling of SPION preparations might be harmful. We therefore conducted a systematic review of the relevant literature to understand how iron oxides deposited in the lung are related to acute and subchronic pulmonary inflammation. We included one human and several in vivo animal studies published up to February 2023. We found 25 relevant studies that were useful for deriving occupational exposure limits (OEL) for iron oxides based on an inflammatory reaction. Our review of the scientific literature indicates that lowering of health-based occupational exposure limits might be considered.
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- 2024
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29. Next Generation Risk Assessment approaches for advanced nanomaterials: Current status and future perspectives.
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Hristozov D, Badetti E, Bigini P, Brunelli A, Dekkers S, Diomede L, Doak SH, Fransman W, Gajewicz-Skretna A, Giubilato E, Gómez-Cuadrado L, Grafström R, Gutleb AC, Halappanavar S, Hischier R, Hunt N, Katsumiti A, Kermanizadeh A, Marcomini A, Moschini E, Oomen A, Pizzol L, Rumbo C, Schmid O, Shandilya N, Stone V, Stoycheva S, Stoeger T, Merino BS, Tran L, Tsiliki G, Vogel UB, Wohlleben W, and Zabeo A
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- Risk Assessment methods, Humans, Animals, Nanotechnology methods, Nanostructures toxicity, Nanostructures adverse effects
- Abstract
This manuscript discusses the challenges of applying New Approach Methodologies (NAMs) for safe by design and regulatory risk assessment of advanced nanomaterials (AdNMs). The authors propose a framework for Next Generation Risk Assessment of AdNMs involving NAMs that is aligned to the conventional risk assessment paradigm. This framework is exposure-driven, endpoint-specific, makes best use of pre-existing information, and can be implemented in tiers of increasing specificity and complexity of the adopted NAMs. The tiered structure of the approach, which effectively combines the use of existing data with targeted testing will allow safety to be assessed cost-effectively and as far as possible with even more limited use of vertebrates. The regulatory readiness of state-of-the-art emerging NAMs is assessed in terms of Transparency, Reliability, Accessibility, Applicability, Relevance and Completeness, and their appropriateness for AdNMs is discussed in relation to each step of the risk assessment paradigm along with providing perspectives for future developments in the respective scientific and regulatory areas., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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30. Normalised similarity assessment to inform grouping of advanced multi-component nanomaterials by means of an Asymmetric Sigmoid function.
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Zabeo A, Tsiliki G, Brunelli A, Badetti E, Balbuena J, and Hristozov D
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- Software, Nanocomposites chemistry, Zinc Oxide chemistry, Nanostructures chemistry, Silicon Dioxide chemistry
- Abstract
This manuscript presents a procedure for similarity assessment as a basis for grouping of multi component nanomaterials (MCNMs). This methodology is an adaptation of the approach by Zabeo et al. (2022), which includes an impactful change: the calculated similarities are normalised in the [0,1] domain by means of asymmetric Logistic scaling to simplify comparisons among properties' distances. This novel approach allows for grouping of nanomaterials that is not affected by the dataset, so that group membership will not change when new candidates are included in the set of assessed materials. It can be applied to assess groups of MCNMs as well as mixed groups of multi and single component nanomaterials as well as chemicals. To facilitate the application of the proposed methodology, a software script was developed by using the Python programming language, which is currently undergoing migration to a user-friendly web-based tool. The presented approach was tested against a real industrial case study provided by the Andalusian Innovation Centre for Sustainable Solution (CIAC): SiO
2 -ZnO hybrid nanocomposite used in building coatings, which is designed to facilitate photocatalytic removal of NOx gases from the atmosphere. The results of applying the methodology in the case study demonstrated that ZnO is dissimilar from the other candidates mainly due to its different dissolution profiles., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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31. Roadmap towards safe and sustainable advanced and innovative materials. (Outlook for 2024-2030).
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Cassee FR, Bleeker EAJ, Durand C, Exner T, Falk A, Friedrichs S, Heunisch E, Himly M, Hofer S, Hofstätter N, Hristozov D, Nymark P, Pohl A, Soeteman-Hernández LG, Suarez-Merino B, Valsami-Jones E, and Groenewold M
- Abstract
The adoption of innovative advanced materials holds vast potential, contingent upon addressing safety and sustainability concerns. The European Commission advocates the integration of Safe and Sustainable by Design (SSbD) principles early in the innovation process to streamline market introduction and mitigate costs. Within this framework, encompassing ecological, social, and economic factors is paramount. The NanoSafety Cluster (NSC) delineates key safety and sustainability areas, pinpointing unresolved issues and research gaps to steer the development of safe(r) materials. Leveraging FAIR data management and integration, alongside the alignment of regulatory aspects, fosters informed decision-making and innovation. Integrating circularity and sustainability mandates clear guidance, ensuring responsible innovation at every stage. Collaboration among stakeholders, anticipation of regulatory demands, and a commitment to sustainability are pivotal for translating SSbD into tangible advancements. Harmonizing standards and test guidelines, along with regulatory preparedness through an exchange platform, is imperative for governance and market readiness. By adhering to these principles, the effective and sustainable deployment of innovative materials can be realized, propelling positive transformation and societal acceptance., Competing Interests: All authors declare that they have no interests to declare.•Flemming R. Cassee, National Institute of Public Health and the Environment (RIVM), the Netherlands & Institute for Risk Assessment Sciences, Utrecht University, Utrecht, the Netherlands•Eric A.J. Bleeker, National Institute of Public Health and the Environment (RIVM), the Netherlands•Cyrille Durand, TEMAS Solutions GmbH, Hausen, Switzerland•Thomas Exner, Seven Past Nine, Cerknica, Slovenia•Andreas Falk, BioNanoNet Forschungsgesellschaft mbH (BNN), Austria•Steffi Friedrichs, AcumenIST SRL, Brussels, Belgium•Elisabeth Heunisch, Federal Institute for Occupational Safety and Health (BAuA), Germany•Martin Himly, Paris Lodron University of Salzburg, Austria•Sabine Hofer, Paris Lodron University of Salzburg, Austria•Norbert Hofstätter, Paris Lodron University of Salzburg, Austria•Danail Hristozov, East European Research and Innovation Enterprise Ltd, Bulgaria•Penny Nymark, Institute of Environmental Medicine, Karolinska Institute, Solna, Sweden•Anna Pohl, Federal Institute for Occupational Safety and Health (BAuA), Germany•Lya G. Soeteman-Hernández, National Institute of Public Health and the Environment (RIVM), the Netherlands•Blanca Suarez-Merino, TEMAS Solutions GmbH, Hausen, Switzerland•Eugenia Valsami-Jones, School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, United Kingdom•Monique Groenewold,National Institute of Public Health and the Environment (RIVM), the Netherlands, (© 2024 The Authors.)
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- 2024
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32. Safe and sustainable by design Ag nanomaterials: A case study to evaluate the bio-reactivity in the environment using a soil model invertebrate.
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Gomes SIL, Zanoni I, Blosi M, Costa AL, Hristozov D, Scott-Fordsmand JJ, and Amorim MJB
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- Animals, Nanostructures toxicity, Invertebrates drug effects, Silver toxicity, Soil Pollutants analysis, Oligochaeta drug effects, Soil chemistry, Metal Nanoparticles toxicity
- Abstract
Safe-and-sustainable-by-design (SSbD) nanomaterials (NMs) or NM-containing products are a priority. Silver (Ag) NMs have a vast array of applications, including biomedical and other products, even as nanopesticides. Thus, their release to the environment is expected to increase. The aim of the present study was to assess the ecotoxicity of the SSbD Ag NM to the soil model species Enchytraeus crypticus (Oligochaeta). The Ag NM tested consists in a SSbD Ag with biomedical applications, a hydroxyethyl cellulose (HEC) coated Ag NMs (AgHEC) and its toxicity was compared to the naked Ag NMs (Ag-Sigma), an Ag-based biomedical product (PLLA-Ag: Poly l-Lactide microfibers doped with Ag), and AgNO
3 . Effects were assessed both in soil and aqueous media, following the standard OECD guideline in soil (28 days) and the OECD extension (56 days), and short-term pulse (5 days) in aqueous media: reconstituted water (ISO water) and soil:water (S:W) extracts, followed by a 21-days recovery period in soil. Ag materials were thoroughly characterized as synthesized and during the test in media and animals. Results in S:W showed AgHEC was more toxic than Ag-Sigma (ca. 150 times) and PLLA-Ag (ca. 2.5 times), associated with a higher Ag uptake. Higher toxicity was related to a smaller hydrodynamic size and higher suspension stability, which in turn resulted in a higher bioavailability of Ag NMs and released ions, particularly in S:W. Toxicity was correlated with the main physicochemical features, providing useful prediction of AgNMs bioactivity. The ability to test E. crypticus in a range of media with different and/or increasing complexity (water, S:W extracts, soil) provided an excellent source to interpret results and is here recommended., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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33. Synthetically accessible de novo design using reaction vectors: Application to PARP1 inhibitors.
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Ghiandoni GM, Flanagan SR, Bodkin MJ, Nizi MG, Galera-Prat A, Brai A, Chen B, Wallace JEA, Hristozov D, Webster J, Manfroni G, Lehtiö L, Tabarrini O, and Gillet VJ
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- Humans, Poly (ADP-Ribose) Polymerase-1 antagonists & inhibitors, Poly (ADP-Ribose) Polymerase-1 metabolism, Software, Poly(ADP-ribose) Polymerase Inhibitors chemistry, Poly(ADP-ribose) Polymerase Inhibitors pharmacology, Poly(ADP-ribose) Polymerase Inhibitors chemical synthesis, Drug Design
- Abstract
De novo design has been a hotly pursued topic for many years. Most recent developments have involved the use of deep learning methods for generative molecular design. Despite increasing levels of algorithmic sophistication, the design of molecules that are synthetically accessible remains a major challenge. Reaction-based de novo design takes a conceptually simpler approach and aims to address synthesisability directly by mimicking synthetic chemistry and driving structural transformations by known reactions that are applied in a stepwise manner. However, the use of a small number of hand-coded transformations restricts the chemical space that can be accessed and there are few examples in the literature where molecules and their synthetic routes have been designed and executed successfully. Here we describe the application of reaction-based de novo design to the design of synthetically accessible and biologically active compounds as proof-of-concept of our reaction vector-based software. Reaction vectors are derived automatically from known reactions and allow access to a wide region of synthetically accessible chemical space. The design was aimed at producing molecules that are active against PARP1 and which have improved brain penetration properties compared to existing PARP1 inhibitors. We synthesised a selection of the designed molecules according to the provided synthetic routes and tested them experimentally. The results demonstrate that reaction vectors can be applied to the design of novel molecules of biological relevance that are also synthetically accessible., (© 2024 The Authors. Molecular Informatics published by Wiley‐VCH GmbH.)
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- 2024
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34. How to formulate hypotheses and IATAs to support grouping and read-across of nanoforms.
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Murphy FA, Johnston HJ, Dekkers S, Bleeker EAJ, Oomen AG, Fernandes TF, Rasmussen K, Jantunen P, Rauscher H, Hunt N, di Cristo L, Braakhuis HM, Haase A, Hristozov D, Wohlleben W, Sabella S, and Stone V
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- Animals, Humans, Risk Assessment, Toxicokinetics, Hazardous Substances toxicity, Hazardous Substances chemistry
- Abstract
Manufacturing and functionalizing materials at the nanoscale has led to the generation of a whole array of nanoforms (NFs) of substances varying in size, morphology, and surface characteristics. Due to financial, time, and ethical considerations, testing every unique NF for adverse effects is virtually impossible. Use of hypothesis-driven grouping and read-across approaches, as supported by the GRACIOUS Framework, represents a promising alternative to case-by-case testing that will make the risk assessment process more efficient. Through application of appropriate grouping hypotheses, the Framework facilitates the assessment of similarity between NFs, thereby supporting grouping and read-across of information, minimizing the need for new testing, and aligning with the 3R principles of replacement, reduction, and refinement of animals in toxicology studies. For each grouping hypothesis an integrated approach to testing and assessment (IATA) guides the user in data gathering and acquisition to test the hypothesis, following a structured format to facilitate efficient decision-making. Here we present the template used to generate the GRACIOUS grouping hypotheses encompassing information relevant to “Lifecycle, environmental release, and human exposure”, “What they are: physicochemical characteristics”, “Where they go: environmental fate, uptake, and toxicokinetics”, and “What they do: human and environmental toxicity”. A summary of the template-derived hypotheses focusing on human health is provided, along with an overview of the IATAs generated by the GRACIOUS project. We discuss the application and flexibility of the template, providing the opportunity to expand the application of grouping and read-across in a logical, evidence-based manner to a wider range of NFs and substances.
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- 2023
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35. A Decision Support System for preclinical assessment of nanomaterials in medical products: the REFINE DSS.
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Zabeo A, Rosada F, Pizzol L, Caputo F, Borgos SE, Parot J, Geertsma RE, Pouw JJ, Vandebriel RJ, Moreno OI, and Hristozov D
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- Nanotechnology methods, Nanomedicine methods, Nanostructures
- Abstract
The application of nanomaterials in medicine has led to novel pharmaceuticals and medical devices that have demonstrated a strong potential for increasing the efficacy/performance and safety of therapeutic and diagnostic procedures to address a wide range of diseases. However, the successful translation of these technologies from their inception (proof-of-concept) to clinical practice has been challenged by substantial gaps in the scientific and technical capacity of R&D companies, especially SMEs, to keep up with the ever-evolving regulatory expectations in the emerging area of nanomedicine. To address these challenges, the EU Horizon 2020 project REFINE has developed a Decision Support System (DSS) to support developers of nanotechnology-enabled health products in bringing their products to the clinic. The REFINE DSS has been developed to support experts, innovators, and regulators in the implementation of intelligent testing strategies (ITS) for efficient preclinical assessment of nanotechnology-enabled health products. The DSS applies logical rules provided by REFINE experts which generate prioritized lists of assays to be performed (i.e. ITSs) for physicochemical characterisation and for immunotoxicological endpoints. The DSS has been tested against several case studies and was validated by internal project experts as well as external ones., (© 2022. The Author(s).)
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- 2022
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36. RENATE: A Pseudo-retrosynthetic Tool for Synthetically Accessible de novo Design.
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Ghiandoni GM, Bodkin MJ, Chen B, Hristozov D, Wallace JEA, Webster J, and Gillet VJ
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- Ligands, Retrospective Studies, Algorithms
- Abstract
Reaction-based de novo design refers to the generation of synthetically accessible molecules using transformation rules extracted from known reactions in the literature. In this context, we have previously described the extraction of reaction vectors from a reactions database and their coupling with a structure generation algorithm for the generation of novel molecules from a starting material. An issue when designing molecules from a starting material is the combinatorial explosion of possible product molecules that can be generated, especially for multistep syntheses. Here, we present the development of RENATE, a reaction-based de novo design tool, which is based on a pseudo-retrosynthetic fragmentation of a reference ligand and an inside-out approach to de novo design. The reference ligand is fragmented; each fragment is used to search for similar fragments as building blocks; the building blocks are combined into products using reaction vectors; and a synthetic route is suggested for each product molecule. The RENATE methodology is presented followed by a retrospective validation to recreate a set of approved drugs. Results show that RENATE can generate very similar or even identical structures to the corresponding input drugs, hence validating the fragmentation, search, and design heuristics implemented in the tool., (© 2021 The Authors. Molecular Informatics published by Wiley-VCH GmbH.)
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- 2022
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37. A methodology for the automatic evaluation of data quality and completeness of nanomaterials for risk assessment purposes.
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Basei G, Rauscher H, Jeliazkova N, and Hristozov D
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- Databases, Factual, Risk Assessment methods, Data Accuracy, Nanostructures chemistry
- Abstract
This manuscript proposes a methodology to assess the completeness and quality of physicochemical and hazard datasets for risk assessment purposes. The approach is also specifically applicable to similarity assessment as a basis for grouping of (nanoforms of) chemical substances as well as for classification of the substances according to the Classification, Labeling and Packaging regulation. The unique goal of this approach is to assess data quality in such a way that all the steps are automatized, thus reducing reliance on expert judgment. The analysis starts from available (meta)data as provided in the data entry templates developed by the NanoSafety community and used for import into the eNanoMapper database. The methodology is implemented in the templates as a traffic light system-the providers of the data can see in real time the completeness scores calculated by the system for their datasets in green, yellow, or red. This is an interactive feedback feature that is intended to provide an incentive for anyone inserting data into the database to deliver more complete and higher quality datasets. The users of the data can also see this information both in the data entry templates and on the database interface, which enables them to select better datasets for their assessments. The proposed methodology has been partially implemented in the eNanoMapper database and in a Weight of Evidence approach for the regulatory classification of nanomaterials. It was fully implemented in a publicly available online R tool.
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- 2022
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38. How can we justify grouping of nanoforms for hazard assessment? Concepts and tools to quantify similarity.
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Jeliazkova N, Bleeker E, Cross R, Haase A, Janer G, Peijnenburg W, Pink M, Rauscher H, Svendsen C, Tsiliki G, Zabeo A, Hristozov D, Stone V, and Wohlleben W
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- Animals, Bayes Theorem, Risk Assessment methods, Nanostructures chemistry
- Abstract
The risk of each nanoform (NF) of the same substance cannot be assumed to be the same, as they may vary in their physicochemical characteristics, exposure and hazard. However, neither can we justify a need for more animal testing and resources to test every NF individually. To reduce the need to test all NFs, (regulatory) information requirements may be fulfilled by grouping approaches. For such grouping to be acceptable, it is important to demonstrate similarities in physicochemical properties, toxicokinetic behaviour, and (eco)toxicological behaviour. The GRACIOUS Framework supports the grouping of NFs, by identifying suitable grouping hypotheses that describe the key similarities between different NFs. The Framework then supports the user to gather the evidence required to test these hypotheses and to subsequently assess the similarity of the NFs within the proposed group. The evidence needed to support a hypothesis is gathered by an Integrated Approach to Testing and Assessment (IATA), designed as decision trees constructed of decision nodes. Each decision node asks the questions and provides the methods needed to obtain the most relevant information. This White paper outlines existing and novel methods to assess similarity of the data generated for each decision node, either via a pairwise analysis conducted property-by-property, or by assessing multiple decision nodes simultaneously via a multidimensional analysis. For the pairwise comparison conducted property-by-property we included in this White paper: The x-fold, Bayesian and Arsinh-OWA distance algorithms performed comparably in the scoring of similarity between NF pairs. The Euclidean distance was also useful, but only with proper data transformation. The x-fold method does not standardize data, and thus produces skewed histograms, but has the advantage that it can be implemented without programming knowhow. A range of multidimensional evaluations, using for example dendrogram clustering approaches, were also investigated. Multidimensional distance metrics were demonstrated to be difficult to use in a regulatory context, but from a scientific perspective were found to offer unexpected insights into the overall similarity of very different materials. In conclusion, for regulatory purposes, a property-by-property evaluation of the data matrix is recommended to substantiate grouping, while the multidimensional approaches are considered to be tools of discovery rather than regulatory methods., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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39. Deep Learning and Computational Chemistry.
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James T and Hristozov D
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- Computational Chemistry, Deep Learning
- Abstract
Within the context of the latest resurgence in the application of artificial intelligence approaches, deep learning has undergone a renaissance over recent years. These methods have been applied to a number of problems in computational chemistry. Compared to other machine learning approaches, the practical performance advantages of deep neural networks are often unclear. However, deep learning does appear to offer a number of other advantages such as the facile incorporation of multitask learning and the enhancement of generative modeling. The high complexity of contemporary network architectures represents a potentially significant barrier to their future adoption due to the costs of training such models and challenges in interpreting their predictions. When combined with the relative paucity of very large datasets, it is interesting to reflect on whether deep learning is likely to have the kind of transformational impact on computational chemistry that it is commonly held to have had in other domains such as image recognition., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2022
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40. Bayesian based similarity assessment of nanomaterials to inform grouping.
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Tsiliki G, Ag Seleci D, Zabeo A, Basei G, Hristozov D, Jeliazkova N, Boyles M, Murphy F, Peijnenburg W, Wohlleben W, and Stone V
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- Bayes Theorem, Environment, Humans, Risk Assessment methods, Nanostructures adverse effects
- Abstract
Nanoforms can be manufactured in plenty of variants by differing their physicochemical properties and toxicokinetic behaviour which can affect their hazard potential. To avoid testing of each single nanomaterial and nanoform variation and subsequently save resources, grouping and read-across strategies are used to estimate groups of substances, based on carefully selected evidence, that could potentially have similar human health and environmental hazard impact. A novel computational similarity method is presented aiming to compare dose-response curves and identify sets of similar nanoforms. The suggested method estimates the statistical model that best fits the data by leveraging pairwise Bayes Factor analysis to compare pairs of curves and evaluate whether each of the nanoforms is sufficiently similar to all other nanoforms. Pairwise comparisons to benchmark materials are used to define threshold similarity values and set the criteria for identifying groups of nanoforms with comparatively similar toxicity. Applications to use case data are shown to demonstrate that the method can support grouping hypotheses linked to a certain hazard endpoint and route of exposure., (Copyright © 2022 Elsevier B.V. All rights reserved.)
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- 2022
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41. Ordered weighted average based grouping of nanomaterials with Arsinh and dose response similarity models.
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Zabeo A, Basei G, Tsiliki G, Peijnenburg W, and Hristozov D
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- Animals, Cluster Analysis, Daphnia, Software, Nanostructures
- Abstract
In the context of the EU GRACIOUS project, we propose a novel procedure for similarity assessment and grouping of nanomaterials. This methodology is based on the (1) Arsinh transformation function for scalar properties, (2) full curve shape comparison by application of a modified Kolmogorov-Smirnov metric for bivariate properties, (3) Ordered Weighted Average (OWA) aggregation-based grouping distance, and (4) hierarchical clustering. The approach allows for grouping of nanomaterials that is not affected by the dataset, so that group membership will not change when new candidates are included in the set of assessed materials. To facilitate the application of the proposed methodology, a software script was developed by using the R programming language which is currently under migration to a web tool. The presented approach was tested against a dataset, derived from literature review, related to immobilization of Daphnia magna and reporting information on several nanomaterials and properties., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2022
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42. A Weight of Evidence approach to classify nanomaterials according to the EU Classification, Labelling and Packaging Regulation criteria.
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Basei G, Zabeo A, Rasmussen K, Tsiliki G, and Hristozov D
- Subjects
- European Union, Risk Assessment, United Nations, Nanostructures adverse effects, Product Labeling
- Abstract
In the context of the European Union (EU) Horizon 2020 GRACIOUS project (Grouping, Read-Across, Characterisation and classification framework for regulatory risk assessment of manufactured nanomaterials and Safer design of nano-enabled products), we proposed a quantitative Weight of Evidence (WoE) approach for hazard classification of nanomaterials (NMs). This approach is based on the requirements of the European Regulation on Classification, Labelling and Packaging of Substances and Mixtures (the CLP regulation), which implements the United Nations' Globally Harmonized System of Classification and Labelling of Chemicals (UN GHS) in the European Union. The goal of this WoE methodology is to facilitate classification of NMs according to CLP criteria, following the decision trees defined in ECHA's CLP regulatory guidance. In the WoE, results from heterogeneous studies are weighted according to data quality and completeness criteria, integrated, and then evaluated by expert judgment to obtain a hazard classification, resulting in a coherent and justifiable methodology. Moreover, the probabilistic nature of the proposed approach enables highlighting the uncertainty in the analysis. The proposed methodology involves the following stages: (1) collection of data for different NMs related to the endpoint of interest: each study related to each NM is referred as a Line of Evidence (LoE); (2) computation of weighted scores for each LoE: each LoE is weighted by a score calculated based on data quality and completeness criteria defined in the GRACIOUS project; (3) comparison and integration of the weighed LoEs for each NM: A Monte Carlo resampling approach is adopted to quantitatively and probabilistically integrate the weighted evidence; and (4) assignment of each NM to a hazard class: according to the results, each NM is assigned to one of the classes defined by the CLP regulation. Furthermore, to facilitate the integration and the classification of the weighted LoEs, an online R tool was developed. Finally, the approach was tested against an endpoint relevant to CLP (Aquatic Toxicity) using data retrieved from the eNanoMapper database, results obtained were consistent to results in REACH registration dossiers and in recent literature., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
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43. Risk Management Framework for Nano-Biomaterials Used in Medical Devices and Advanced Therapy Medicinal Products.
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Giubilato E, Cazzagon V, Amorim MJB, Blosi M, Bouillard J, Bouwmeester H, Costa AL, Fadeel B, Fernandes TF, Fito C, Hauser M, Marcomini A, Nowack B, Pizzol L, Powell L, Prina-Mello A, Sarimveis H, Scott-Fordsmand JJ, Semenzin E, Stahlmecke B, Stone V, Vignes A, Wilkins T, Zabeo A, Tran L, and Hristozov D
- Abstract
The convergence of nanotechnology and biotechnology has led to substantial advancements in nano-biomaterials (NBMs) used in medical devices (MD) and advanced therapy medicinal products (ATMP). However, there are concerns that applications of NBMs for medical diagnostics, therapeutics and regenerative medicine could also pose health and/or environmental risks since the current understanding of their safety is incomplete. A scientific strategy is therefore needed to assess all risks emerging along the life cycles of these products. To address this need, an overarching risk management framework (RMF) for NBMs used in MD and ATMP is presented in this paper, as a result of a collaborative effort of a team of experts within the EU Project BIORIMA and with relevant inputs from external stakeholders. The framework, in line with current regulatory requirements, is designed according to state-of-the-art approaches to risk assessment and management of both nanomaterials and biomaterials. The collection/generation of data for NBMs safety assessment is based on innovative integrated approaches to testing and assessment (IATA). The framework can support stakeholders (e.g., manufacturers, regulators, consultants) in systematically assessing not only patient safety but also occupational (including healthcare workers) and environmental risks along the life cycle of MD and ATMP. The outputs of the framework enable the user to identify suitable safe(r)-by-design alternatives and/or risk management measures and to compare the risks of NBMs to their (clinical) benefits, based on efficacy, quality and cost criteria, in order to inform robust risk management decision-making.
- Published
- 2020
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44. Comparison of species sensitivity distribution modeling approaches for environmental risk assessment of nanomaterials - A case study for silver and titanium dioxide representative materials.
- Author
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Sørensen SN, Wigger H, Zabeo A, Semenzin E, Hristozov D, Nowack B, Spurgeon DJ, and Baun A
- Subjects
- Ecosystem, Fresh Water chemistry, Reproducibility of Results, Risk Assessment, Silver toxicity, Titanium toxicity, Nanostructures toxicity, Toxicity Tests methods, Water Pollutants, Chemical toxicity
- Abstract
Species sensitivity distributions (SSDs) are used in chemical safety assessments to derive predicted-no-effect-concentrations (PNECs) for substances with a sufficient amount of relevant and reliable ecotoxicity data available. For engineered nanomaterials (ENMs), ecotoxicity data are often compromised by poor reproducibility and the lack of nano-specific characterization needed describe an ENM under test exposure conditions. This may influence the outcome of SSD modelling and hence the regulatory decision-making. This study investigates how the outcome of SSD modelling is influenced by: 1) Selecting input data based on the nano-specific "nanoCRED" reliability criteria, 2) Direct SSD modelling avoiding extrapolation of data by including long-term/chronic NOECs only, and 3) Weighting data according to their nano-specific quality, the number of data available for each species, and the trophic level abundance in the ecosystem. Endpoints from freshwater ecotoxicity studies were collected for the representative nanomaterials NM-300 K (silver) and NM-105 (titanium dioxide), evaluated for regulatory reliability and scored according to the level of nano-specific characterization conducted. The compiled datasets are unique in exclusively dealing with representative ENMs showing minimal batch-to-batch variation. The majority of studies were evaluated as regulatory reliable, while the degree of nano-specific characterization varied greatly. The datasets for NM-300 K and NM-105 were used as input to the nano-weighted n-SSWD model, the probabilistic PSSD+, and the conventional SSD Generator by the US EPA. The conventional SSD generally yielded the most conservative, but least precise HC
5 values, with 95 % confidence intervals up to 100-fold wider than the other models. The inclusion of regulatory reliable data only, had little effect on the HC5 generated by the conventional SSD and the PSSD+, whereas the n-SSWD estimated different HC5 values based on data segregated according to reliability, especially for NM-105. The n-SSWD weighting of data significantly affected the estimated HC5 values, however in different ways for the sub-datasets of NM-300 K and NM-105. For NM-300 K, the inclusion of NOECs only in the weighted n-SSWD yielded the most conservative HC5 of all datasets and models (a HC5 based on NOECs only could not be estimated for NM-105, due to limited number of data). Overall, the estimated HC5 values of all models are within a relatively limited concentration range of 25-100 ng Ag/L for NM-300 K and 1-15 μgTiO2 /L for NM-105., Competing Interests: Declaration of Competing Interest There are no conflicts to declare., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
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45. Enhancing reaction-based de novo design using a multi-label reaction class recommender.
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Ghiandoni GM, Bodkin MJ, Chen B, Hristozov D, Wallace JEA, Webster J, and Gillet VJ
- Subjects
- Algorithms, Chemistry Techniques, Synthetic methods, Chemistry Techniques, Synthetic statistics & numerical data, Chemistry, Pharmaceutical methods, Chemistry, Pharmaceutical statistics & numerical data, Computer Simulation, Computer-Aided Design, Databases, Chemical, Databases, Pharmaceutical, Humans, Machine Learning, Small Molecule Libraries, Drug Design
- Abstract
Reaction-based de novo design refers to the in-silico generation of novel chemical structures by combining reagents using structural transformations derived from known reactions. The driver for using reaction-based transformations is to increase the likelihood of the designed molecules being synthetically accessible. We have previously described a reaction-based de novo design method based on reaction vectors which are transformation rules that are encoded automatically from reaction databases. A limitation of reaction vectors is that they account for structural changes that occur at the core of a reaction only, and they do not consider the presence of competing functionalities that can compromise the reaction outcome. Here, we present the development of a Reaction Class Recommender to enhance the reaction vector framework. The recommender is intended to be used as a filter on the reaction vectors that are applied during de novo design to reduce the combinatorial explosion of in-silico molecules produced while limiting the generated structures to those which are most likely to be synthesisable. The recommender has been validated using an external data set extracted from the recent medicinal chemistry literature and in two simulated de novo design experiments. Results suggest that the use of the recommender drastically reduces the number of solutions explored by the algorithm while preserving the chance of finding relevant solutions and increasing the global synthetic accessibility of the designed molecules.
- Published
- 2020
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46. Development and Application of a Data-Driven Reaction Classification Model: Comparison of an Electronic Lab Notebook and Medicinal Chemistry Literature.
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Ghiandoni GM, Bodkin MJ, Chen B, Hristozov D, Wallace JEA, Webster J, and Gillet VJ
- Subjects
- Models, Chemical, Molecular Structure, Chemistry, Pharmaceutical, Databases, Chemical, Machine Learning
- Abstract
Reaction classification has often been considered an important task for many different applications, and has traditionally been accomplished using hand-coded rule-based approaches. However, the availability of large collections of reactions enables data-driven approaches to be developed. We present the development and validation of a 336-class machine learning-based classification model integrated within a Conformal Prediction (CP) framework to associate reaction class predictions with confidence estimations. We also propose a data-driven approach for "dynamic" reaction fingerprinting to maximize the effectiveness of reaction encoding, as well as developing a novel reaction classification system that organizes labels into four hierarchical levels (SHREC: Sheffield Hierarchical REaction Classification). We show that the performance of the CP augmented model can be improved by defining confidence thresholds to detect predictions that are less likely to be false. For example, the external validation of the model reports 95% of predictions as correct by filtering out less than 15% of the uncertain classifications. The application of the model is demonstrated by classifying two reaction data sets: one extracted from an industrial ELN and the other from the medicinal chemistry literature. We show how confidence estimations and class compositions across different levels of information can be used to gain immediate insights on the nature of reaction collections and hidden relationships between reaction classes.
- Published
- 2019
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47. Controlling the risks of nano-enabled products through the life cycle: The case of nano copper oxide paint for wood protection and nano-pigments used in the automotive industry.
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Semenzin E, Subramanian V, Pizzol L, Zabeo A, Fransman W, Oksel C, Hristozov D, and Marcomini A
- Subjects
- Anti-Bacterial Agents adverse effects, Automobiles, Fungicides, Industrial adverse effects, Humans, Metal Nanoparticles adverse effects, Risk Assessment, Soot adverse effects, Wood, Carbonates adverse effects, Coloring Agents adverse effects, Copper adverse effects, Environmental Exposure adverse effects, Nanostructures adverse effects, Paint adverse effects
- Abstract
The widespread use of engineered nanomaterials (ENMs) in consumer products and the overwhelming uncertainties in their ecological and human health risks have raised concerns regarding their safety among industries and regulators. There has been an ongoing debate over the past few decades on ways to overcome the challenges in assessing and mitigating nano-related risks, which has reached a phase of general consensus that nanotechnology innovation should be accompanied by the application of the precautionary principle and best practice risk management, even if the risk assessment uncertainties are large. We propose a quantitative methodology for selecting the optimal risk control strategy based on information about human health and ecological risks, efficacy of risk mitigation measures, cost and other contextual factors. The risk control (RC) methodology was developed in the European FP7 research project SUN and successfully demonstrated in two case studies involving real industrial nano-enabled products (NEPs): nano-scale copper oxide (CuO) and basic copper carbonate (Cu
2 (OH)2 CO3 ) used as antimicrobial and antifungal coatings and impregnations for the preservation of treated wood, and two nanoscale pigments used for colouring plastic automotive parts (i.e. red organic pigment and carbon black). The application of RC for human health risks showed that although nano-related risks could easily be controlled in automotive plastics case study with modifications in production technology or specific type of engineering controls, nano-related risks due to sanding and sawing copper oxide painted wood were non-acceptable in the use lifecycle stage and would need the identification of a more effective risk control strategy., (Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2019
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48. Guiding the development of sustainable nano-enabled products for the conservation of works of art: proposal for a framework implementing the Safe by Design concept.
- Author
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Semenzin E, Giubilato E, Badetti E, Picone M, Volpi Ghirardini A, Hristozov D, Brunelli A, and Marcomini A
- Subjects
- Humans, Safety Management, Nanotechnology, Risk Assessment methods
- Abstract
Nanotechnology provides innovative and promising solutions for the conservation of cultural heritage, but the development and application of new nano-enabled products pose concerns regarding their human health and environmental risks. To address these issues, we propose a sustainability framework implementing the Safe by Design concept to support product developers in the early steps of product development, with the aim to provide safer nano-formulations for conservation, while retaining their functionality. In addition, this framework can support the assessment of sustainability of new products and their comparison to their conventional chemical counterparts if any. The goal is to promote the selection and use of safer and more sustainable nano-based products in different conservation contexts. The application of the proposed framework is illustrated through a hypothetical case which provides a realistic example of the methodological steps to be followed, tailored and iterated along the decision-making process.
- Published
- 2019
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49. Risk Governance of Nanomaterials: Review of Criteria and Tools for Risk Communication, Evaluation, and Mitigation.
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Isigonis P, Hristozov D, Benighaus C, Giubilato E, Grieger K, Pizzol L, Semenzin E, Linkov I, Zabeo A, and Marcomini A
- Abstract
Nanotechnologies have been increasingly used in industrial applications and consumer products across several sectors, including construction, transportation, energy, and healthcare. The widespread application of these technologies has raised concerns regarding their environmental, health, societal, and economic impacts. This has led to the investment of enormous resources in Europe and beyond into the development of tools to facilitate the risk assessment and management of nanomaterials, and to inform more robust risk governance process. In this context, several risk governance frameworks have been developed. In our study, we present and review those, and identify a set of criteria and tools for risk evaluation, mitigation, and communication, the implementation of which can inform better risk management decision-making by various stakeholders from e.g., industry, regulators, and the civil society. Based on our analysis, we recommend specific methods from decision science and information technologies that can improve the existing risk governance tools so that they can communicate, evaluate, and mitigate risks more transparently, taking stakeholder perspectives and expert opinion into account, and considering all relevant criteria in establishing the risk-benefit balance of these emerging technologies to enable more robust decisions about the governance of their risks., Competing Interests: The authors declare no conflict of interest.
- Published
- 2019
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50. Quantitative human health risk assessment along the lifecycle of nano-scale copper-based wood preservatives.
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Hristozov D, Pizzol L, Basei G, Zabeo A, Mackevica A, Hansen SF, Gosens I, Cassee FR, de Jong W, Koivisto AJ, Neubauer N, Sanchez Jimenez A, Semenzin E, Subramanian V, Fransman W, Jensen KA, Wohlleben W, Stone V, and Marcomini A
- Subjects
- Animals, Anti-Infective Agents analysis, Carbonates analysis, Child, Copper analysis, Dose-Response Relationship, Drug, Environmental Exposure analysis, Humans, Male, Nanoparticles analysis, Rats, Risk Assessment, Time Factors, Anti-Infective Agents toxicity, Carbonates toxicity, Copper toxicity, Environmental Exposure adverse effects, Nanoparticles toxicity, Wood microbiology
- Abstract
The use of nano-scale copper oxide (CuO) and basic copper carbonate (Cu
2 (OH)2 CO3 ) in both ionic and micronized wood preservatives has raised concerns about the potential of these substances to cause adverse humans health effects. To address these concerns, we performed quantitative (probabilistic) human health risk assessment (HHRA) along the lifecycles of these formulations used in antibacterial and antifungal wood coatings and impregnations by means of the EU FP7 SUN project's Decision Support System (SUNDS, www.sunds.gd). The results from the risk analysis revealed inhalation risks from CuO in exposure scenarios involving workers handling dry powders and performing sanding operations as well as potential ingestion risks for children exposed to nano Cu2 (OH)2 CO3 in a scenario involving hand-to-mouth transfer of the substance released from impregnated wood. There are, however, substantial uncertainties in these results, so some of the identified risks may stem from the safety margin of extrapolation to fill data gaps and might be resolved by additional testing. Our stochastic approach successfully communicated the contribution of different sources of uncertainty in the risk assessment. The main source of uncertainty was the extrapolation from short to long-term exposure, which was necessary due to the lack of (sub)chronic in vivo studies with CuO and Cu2 (OH)2 CO3 . Considerable uncertainties also stemmed from the use of default inter- and intra-species extrapolation factors.- Published
- 2018
- Full Text
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