163 results on '"Hore PJ"'
Search Results
2. The magnetic retina: light-dependent and trigeminal magnetoreception in migratory birds
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Mouritsen, Henrik and Hore, PJ
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- 2012
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3. Upper bound on the biological effects of 50/60 Hz magnetic fields mediated by radical pairs
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Hore, PJ
- Subjects
0301 basic medicine ,extremely low frequency electromagnetic fields ,Spin dynamics ,Free Radicals ,QH301-705.5 ,Science ,spin dynamics ,Physics of Living Systems ,Upper and lower bounds ,Risk Assessment ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,radical pairs ,None ,Humans ,Biology (General) ,magnetic field effects ,Physics ,Leukemia ,General Immunology and Microbiology ,General Neuroscience ,Magnetoreception ,General Medicine ,Childhood leukaemia ,Magnetic field ,Prolonged exposure ,030104 developmental biology ,Earth's magnetic field ,Increased risk ,Magnetic Fields ,magnetoreception ,Yield (chemistry) ,Medicine ,Atomic physics ,human activities ,030217 neurology & neurosurgery ,Research Article - Abstract
Prolonged exposure to weak (~1 μT) extremely-low-frequency (ELF, 50/60 Hz) magnetic fields has been associated with an increased risk of childhood leukaemia. One of the few biophysical mechanisms that might account for this link involves short-lived chemical reaction intermediates known as radical pairs. In this report, we use spin dynamics simulations to derive an upper bound of 10 parts per million on the effect of a 1 μT ELF magnetic field on the yield of a radical pair reaction. By comparing this figure with the corresponding effects of changes in the strength of the Earth’s magnetic field, we conclude that if exposure to such weak 50/60 Hz magnetic fields has any effect on human biology, and results from a radical pair mechanism, then the risk should be no greater than travelling a few kilometres towards or away from the geomagnetic north or south pole.
- Published
- 2018
4. Upper bound on the biological effects of 50/60 Hz magnetic fields mediated by radical pairs
- Author
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Hore, PJ, primary
- Published
- 2019
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5. Author response: Upper bound on the biological effects of 50/60 Hz magnetic fields mediated by radical pairs
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Hore, PJ, primary
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- 2019
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6. An NMR method for studying the kinetics of metal exchange in biomolecular systems
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Barbieri, R, Hore, PJ, Luchina, C, and Pierattelli, R
- Abstract
The kinetics of lanthanide (III) exchange for calcium(II) in the C-terminal EF-hand of the protein calbindin D9k have been studied by one-dimensional (1D) stopped-flow NMR. By choosing a paramagnetic lanthanide (Ce3+), kinetics in the sub-second range can be easily measured. This is made possible by the fact that (i) the kinetic behaviour of hyperfine shifted signals can be monitored in ID NMR and (ii) fast repetition rates can be employed because these hyperfine shifted signals relax fast. It is found that the Ce3+-Ca2+ exchange process indeed takes place on a sub-second timescale and can be easily monitored with this technique. As the rate of calcium-cerium substitution was found not to depend on the presence of excess calcium in solution, the kinetics of the process were interpreted in terms of a bimolecular associative mechanism, and the rate constants extracted. Interestingly, the dissociative mechanism involving the apo form of the protein, which is generally assumed for metal ion exchange at protein binding sites, was not in agreement with our data.
- Published
- 2016
7. Weak broadband electromagnetic fields are more disruptive to magnetic compass orientation in a night-migratory songbird (Erithacus rubecula) than strong narrow-band fields
- Author
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Hore, PJ
- Abstract
Magnetic compass orientation in night-migratory songbirds is embedded in the visual system and seems to be based on a light-dependent radical pair mechanism. Recent findings suggest that both broadband electromagnetic fields ranging from ~2 kHz to ~9 MHz and narrow-band fields at the so-called Larmor frequency for a free electron in the Earth’s magnetic field can disrupt this mechanism. However, due to local magnetic fields generated by nuclear spins, effects specific to the Larmor frequency are difficult to understand considering that the primary sensory molecule should be organic and probably a protein. We therefore constructed a purpose-built laboratory and tested the orientation capabilities of European robins in an electromagnetically silent environment, under the specific influence of four different oscillating narrow-band electromagnetic fields, at the Larmor frequency, double the Larmor frequency, 1.315 MHz or 50 Hz, and in the presence of broadband electromagnetic noise covering the range from ~2 kHz to ~9 MHz. Our results indicated that the magnetic compass orientation of European robins could not be disrupted by any of the relatively strong narrow-band electromagnetic fields employed here, but that the weak broadband field very efficiently disrupted their orientation.
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- 2016
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8. NMR Principles
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Hore, PJ
- Subjects
Condensed Matter::Strongly Correlated Electrons - Abstract
The basic theory behind NMR spectroscopy is described. The various NMR parameters that can be obtained from NMR spectra are explained, including the chemical shift, spin-spin coupling, and relaxation. Some explanation of the theory of how NMR is detected is also presented. © 1999 Elsevier Ltd All rights reserved.
- Published
- 2016
9. 1H and 13C hyperfine coupling constants of the tryptophanyl cation radical in aqueous solution from microsecond time-resolved CIDNP
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Kiryutin, AS, Morozova, OB, Kuhn, LT, Yurkovskaya, AV, and Hore, PJ
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Relative values of the 1H and 13C isotropic hyperfine couplings in the cationic oxidized tryptophan radical TrpH*+ in aqueous solution are determined. The data are obtained from the photo-CIDNP (chemically induced dynamic nuclear polarization) enhancements observed in the microsecond time-resolved NMR spectra of the diamagnetic products of photochemical reactions in which TrpH*+ is a transient intermediate. The method is validated using the tyrosyl neutral radical Tyr*, whose 1H and 13C hyperfine couplings have previously been determined by electron paramagnetic resonance spectroscopy. Good agreement is found with hyperfine coupling constants for TrpH*+ calculated using density functional theory methods but only if water molecules are explicitly included in the calculation.
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- 2016
10. Electron paramagnetic resonance of the primary radical pair [D-center dot+Phi(A)(center dot-)] in reaction centers of photosynthetic bacteria
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Proskuryakov, II, Klenina, IB, Hore, PJ, Bosch, MK, Gast, P, and Hoff, AJ
- Abstract
Using continuous wave EPR spectroscopy with a high time resolution, a new short-lived signal at g=2 is observed in bacterial photosynthetic reaction centers in which electron transfer past the bacteriopheophytin ΦA is blocked. This signal decays with a time constant equal to the rise time of the triplet state of the primary donor 3D, and is therefore attributed to the primary radical pair [D·+ Φ·-A]. Applying the theory of spin-correlated radical pairs, the spectrum could be satisfactorily simulated, yielding the following magnetic interaction parameters between D·+ and Φ·-A: exchange interaction JDΦ = -0.9 ± 0.1 mT and JDΦ = -1.7 ± 0.1 mT for reaction centers of Rhodobacter sphaeroides R26 and Rhodopseudomonas viridis, respectively, and an axial dipolar interaction DDΦ = -3.0 ± 0.5 mT for Rhodopseudomonas viridis. The implications of the magnitude and sign of the exchange parameters for the energetics of photosynthetic electron transfer are discussed.
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- 2016
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11. Rapid formation of non-native contacts during the folding of HPr revealed by real-time photo-CIDNP NMR and stopped-flow fluorescence experiments
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Canet, D, Lyon, CE, Scheek, RM, Robillard, GT, Dobson, CM, Hore, PJ, van Nuland, NAJ, Lyon, Charles E., Dobson, Christopher M., Hore, Peter J., Groningen Biomolecular Sciences and Biotechnology, Molecular Dynamics, Enzymology, and Faculty of Science and Engineering
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Models, Molecular ,Protein Denaturation ,Protein Folding ,RESTRAINED MOLECULAR-DYNAMICS ,Globular protein ,Photochemistry ,Fluorescence Polarization ,DISEASE ,Bacterial Proteins ,Structural Biology ,Native state ,AMINO-ACIDS ,CONTAINING PHOSPHOCARRIER PROTEIN ,Hydrophobic collapse ,Phosphoenolpyruvate Sugar Phosphotransferase System ,Molecular Biology ,Nuclear Magnetic Resonance, Biomolecular ,chemistry.chemical_classification ,Quenching (fluorescence) ,photo-CIDNP ,CIDNP ,Chemistry ,Tryptophan ,real-time NMR ,INTERMEDIATE ,Crystallography ,Kinetics ,HISTIDINE ,HIGH-RESOLUTION STRUCTURE ,non-native contacts ,Biophysics ,Mutagenesis, Site-Directed ,TRIPLET ,Protein folding ,fluorescence ,HEN LYSOZYME ,Fluorescence anisotropy - Abstract
We report the combined use of real-time photo-CIDNP NMR and stopped-flow fluorescence techniques to study the kinetic refolding of a set of mutants of a small globular protein, HPr, in which each of the four phenylalanine residues has in turn been replaced by a tryptophan residue. The results indicate that after refolding is initiated, the protein collapses around at least three, and possibly all four, of the side-chains of these residues, as (i) the observation of transient histidine photo-CIDNP signals during refolding of three of the mutants (F2W, F29W, and F48W) indicates a strong decrease in tryptophan accessibility to the flavin dye; (ii) iodide quenching experiments show that the quenching of the fluorescence of F48W is less efficient for the species formed during the dead-time of the stopped-flow experiment than for the fully native state; and (iii) kinetic fluorescence anisotropy measurements show that the tryptophan side-chain of F48W has lower mobility in the dead-time intermediate state than in both the fully denatured and fully native states. The hydrophobic collapse observed for HPr during the early stages of its folding appears to act primarily to bury hydrophobic residues. This process may be important in preventing the protein from aggregating prior to the acquisition of native-like structure in which hydrophobic residues are exposed in order to play their role in the function of the protein. The phenylalanine residue at position 48 is likely to be of particular interest in this regard as it is involved in the binding to enzymes I and 11 that mediates the transfer of a phosphoryl group between the two enzymes. (C) 2003 Elsevier Science Ltd. All rights reserved.
- Published
- 2003
12. Lipoprotein complex of equine lysozyme with oleic acid (ELOA) interactions with the plasma membrane of live cells
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Vukojevic, Vladana, Bowen, Alice M, Wilhelm, Kristina, Ming, Yu, Schleucher, Jürgen, Hore, PJ, Terenius, Lars, Morozova-Roche, Ludmilla A, Ce, Zhang, Vukojevic, Vladana, Bowen, Alice M, Wilhelm, Kristina, Ming, Yu, Schleucher, Jürgen, Hore, PJ, Terenius, Lars, Morozova-Roche, Ludmilla A, and Ce, Zhang
- Abstract
Recent evidence supports the idea that early aggregates, protein, and lipoprotein oligomers but not large aggregates like fibrils that are formed at late stages of the aggregation process are responsible for cytotoxicity. Oligomers can interact with the cellular plasma membrane affecting its structure and/or dynamics or may be taken up by the cells. In either case, disparate cascades of molecular interactions are activated in the attempt to counteract the disturbance induced by the oligomers. If unsuccessful, cell death follows. Here, we study the molecular and cellular mechanisms underlying PC12 cell death caused by ELOA oligomers. ELOA, a lipoprotein complex formed by equine lysozyme (EL) and oleic acid (OA), induces cell death in all tested cell lines, but the actual mechanism of its action is not known. We have used methods with single-molecule sensitivity, fluorescence correlation spectroscopy (FCS), fluorescence cross-correlation spectroscopy (FCCS), and confocal laser scanning microscopy (CLSM) imaging by avalanche photodiodes (APD), so-called APD imaging, to study ELOA interactions with the plasma membrane in live PC12 cells. We detected ELOA accumulation in the cell surroundings, observed ELOA interactions with the plasma membrane, and local changes in plasma membrane lipid dynamics in the vicinity of ELOA complexes. These interactions resulted in plasma membrane rupture, followed by rapid influx and distribution of ELOA inside the already dead cell. In order to probe the ELOA−plasma membrane interaction sites at the molecular and atomic levels, the ELOA complexes were further studied by photochemically induced dynamic nuclear polarization (photo-CIDNP) spectroscopy, nuclear magnetic resonance (NMR) and atomic force microscopy (AFM). We observed a novel mechanism of oligomer toxicity−cell death induced by continuous disturbance of the plasma membrane, eventually causing permanent plasma membrane damage and identified the sites in ELOA that are potentially i
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- 2010
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13. A comparison of albumin, polygeline and crystalloid priming solutions for cardiopulmonary bypass in patients having coronary artery bypass graft surgery.
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Scott DA, Hore PJ, Cannata J, Mason K, Treagus B, and Mullaly J
- Abstract
This study was designed to assess the effect of different prime solution compositions on a patient's fluid balance, transfusion requirements, renal function and haemodynamic stability over the first 24 hours postbypass. Ninety-three patients presenting for first-time coronary artery bypass graft (CABG) surgery were randomly allocated to receive one of three prime solutions for the CPB pump: albumin (4.6%) + Plasmalyte (Group A, n = 32), polygeline (Hemaccel) + Plasmalyte (Group P, n = 29), or crystalloid (Plasmalyte) alone (Group C, n = 32). Patients, anaesthetists, surgeons and intensive care unit (ICU) staff were all blinded as to the solution type. The groups were demographically and haemodynamically similar. There were no differences between the groups with respect to white cell or platelet counts during the study. There was a significant difference in haemoglobin levels between the groups on weaning from CPB and on arrival in the ICU (Group C > Groups P and A, p < 0.001 for both times). There was no difference in blood transfusion requirements between any of the groups. During CPB, Group C required significantly more crystalloid than the other groups (p < 0.001). Urine output was significantly higher in Group C compared with Groups P and A at all time periods up to and including ICU 12 hours (p < 0.05). The use of frusemide was significantly higher in the ICU in Groups P and A (p < 0.01). There was a net gain of 3132 + or - 412 ml in Group C in 24 hour fluid balance, which was significantly higher than Group A (2166 + or - 223 ml, p = 0.04). Our results show that, in this patient population, there is no advantage in using a colloid-based prime solution over a purely crystalloid solution from a haemotologic or haemodynamic point of view for the first 24 hours after CPB. There appears to be an increase in extracellular fluid (ECF) retention in Group C, but this caused no related problems in the study period. On the other hand, diuretics (frusemide) needed to be given significantly less often in these patients to offset oliguria. [ABSTRACT FROM AUTHOR]
- Published
- 1995
14. PROTON NUCLEAR MAGNETIC-RESONANCE ASSIGNMENTS AND SURFACE ACCESSIBILITY OF TRYPTOPHAN RESIDUES IN LYSOZYME USING PHOTOCHEMICALLY INDUCED DYNAMIC NUCLEAR-POLARIZATION SPECTROSCOPY
- Author
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HORE, PJ and KAPTEIN, R
- Published
- 1983
15. ELECTRON-SPIN POLARIZATION IN A 3-ELECTRON SPIN SYSTEM - AN APPLICATION TO BACTERIAL PHOTOSYNTHESIS
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HOFF, AJ and HORE, PJ
- Abstract
Calculations on a system consisting of three electron spins and one nuclear spin are presented and their implications for bacterial photosynthesis discussed. Comparison with experimental measurements of electron spin polarization in pre-reduced photosynthetic reaction centres leads to conclusion that the exchange interaction within the primary radical pair is positive and less than 0.8 mT when the g values of the photoinduced radicals are taken to be those measured for the isolated radical species. © 1984.
- Published
- 1984
16. PHOTO-CIDNP H-1-NMR STUDIES OF BOVINE PANCREATIC PHOSPHOLIPASE-A2 AND ITS ZYMOGEN
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EGMOND, MR, HORE, PJ, and KAPTEIN, R
- Published
- 1983
17. Nuclear magnetic resonance. Solvent suppression
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Hore, PJ
- Published
- 1989
18. INVESTIGATION BY PHOTOCHEMICALLY-INDUCED DYNAMIC NUCLEAR-POLARIZATION AND NUCLEAR OVERHAUSER ENHANCEMENT H-1-NMR OF THE INTERACTION BETWEEN BETA-ENDORPHIN AND PHOSPHOLIPID MICELLES
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ZETTA, L, HORE, PJ, and KAPTEIN, R
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- 1983
19. MULTIPLET SELECTION IN CROWDED H-1-NMR SPECTRA VIA DOUBLE QUANTUM COHERENCE
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HORE, PJ, ZUIDERWEG, ERP, NICOLAY, K, DIJKSTRA, K, and KAPTEIN, R
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- 1982
20. General discussion
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Symons, MCR, Kaptein, R, Hore, PJ, Albery, WJ, McLauchlan, KA, Trifunac, AD, Wasielewski, MR, Weller, A, Molin, YN, Brocklehurst, B, Iwasaki, M, Williams, F, Percival, PW, Roduner, E, and Bahnemann, D
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- 1984
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21. Spin control of hybrid quantum-dot-based radical pairs.
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Hore PJ
- Abstract
Competing Interests: Competing interests: The author declares no competing interests.
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- 2025
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22. Spin Dynamics of Radical Pairs Using the Stochastic Schrödinger Equation in MolSpin .
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Pažėra GJ, Fay TP, Solov'yov IA, Hore PJ, and Gerhards L
- Abstract
The chemical reactivity of radical pairs is strongly influenced by the interactions of electronic and nuclear spins. A detailed understanding of these effects requires a quantum description of the spin dynamics that considers spin-dependent reaction rates, interactions with external magnetic fields, spin-spin interactions, and the loss of spin coherence caused by coupling to a fluctuating environment. Modeling real chemical and biochemical systems, which frequently involve radicals with multinuclear spin systems, poses a severe computational challenge. Here, we implement a method based on the stochastic Schrödinger equation in the software package MolSpin . Large electron-nuclear spin systems can be simulated efficiently, with asymmetric spin-selective recombination reactions, anisotropic hyperfine interactions, and nonzero exchange and dipolar couplings. Spin-relaxation can be modeled using the stochastic time-dependence of spin interactions determined by molecular dynamics and quantum chemical calculations or by allowing rate coefficients to be explicitly time-dependent. The flexibility afforded by this approach opens new avenues for exploring the effects of complex molecular motions on the spin dynamics of chemical transformations.
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- 2024
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23. Orientation of birds in radiofrequency fields in the absence of the Earth's magnetic field: a possible test for the radical pair mechanism of magnetoreception.
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Luo J, Benjamin P, Gerhards L, Hogben HJ, and Hore PJ
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- Animals, Cryptochromes metabolism, Radio Waves, Earth, Planet, Songbirds physiology, Models, Biological, Orientation physiology, Animal Migration physiology, Magnetic Fields
- Abstract
The magnetic compass sense of migratory songbirds is thought to derive from magnetically sensitive photochemical reactions in cryptochromes located in photoreceptor cells in the birds' retinas. More specifically, transient radical pairs formed by light-activation of these proteins have been proposed to account for the birds' ability to orient themselves using the Earth's magnetic field and for the observation that radiofrequency magnetic fields, superimposed on the Earth's magnetic field, can disrupt this ability. Here, by means of spin dynamics simulations, we show that it may be possible for the birds to orient in a monochromatic radiofrequency field in the absence of the Earth's magnetic field. If such a behavioural test were successful, it would provide powerful additional evidence for a radical pair mechanism of avian magnetoreception.
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- 2024
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24. Proteins as nanomagnets and magnetoreceptors.
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Hore PJ
- Subjects
- Animals, Proteins chemistry, Proteins metabolism
- Published
- 2024
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25. Bassetto et al. reply.
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Bassetto M, Reichl T, Kobylkov D, Kattnig DR, Winklhofer M, Hore PJ, and Mouritsen H
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- 2024
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26. Spin chemistry in living systems.
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Hore PJ
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- 2024
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27. Conditions for EPR detection of chirality-induced spin selectivity in spin-polarized radical pairs in isotropic solution.
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Ren Y and Hore PJ
- Abstract
Chiral molecules can act as spin filters, preferentially transmitting electrons with spins polarized along their direction of travel, an effect known as chirality-induced spin selectivity (CISS). In a typical experiment, injected electrons tunnel coherently through a layer of chiral material and emerge spin-polarized. It is also possible that spin polarization arises in radical pairs formed photochemically when electrons hop incoherently between donor and acceptor sites. Here we aim to identify the magnetic properties that would optimise the visibility of CISS polarization in time-resolved electron paramagnetic resonance (EPR) spectra of transient radical pairs without the need to orient or align their precursors. By simulating spectra of actual and model systems, we find that CISS contributions to the polarization should be most obvious when at least one of the radicals has small g-anisotropy and an inhomogeneous linewidth larger than the dipolar coupling of the two radicals. Under these conditions there is extensive cancellation of absorptive and emissive enhancements making the spectrum sensitive to small changes in the individual EPR line intensities. Although these cancellation effects are more pronounced at lower spectrometer frequencies, the spectral changes are easier to appreciate with the enhanced resolution afforded by high-frequency EPR. Consideration of published spectra of light-induced radical pairs in photosynthetic bacterial reaction centres reveals no significant CISS component in the polarization generated by the conventional spin-correlated radical pair mechanism., (© 2023 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).)
- Published
- 2023
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28. Singlet-triplet dephasing in radical pairs in avian cryptochromes leads to time-dependent magnetic field effects.
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Golesworthy MJ, Zollitsch T, Luo J, Selby D, Jarocha LE, Henbest KB, Paré-Labrosse O, Bartölke R, Schmidt J, Xu J, Mouritsen H, Hore PJ, Timmel CR, and Mackenzie SR
- Subjects
- Animals, Magnetic Fields, Animal Migration, Chickens physiology, Cryptochromes chemistry, Cryptochromes physiology, Avian Proteins
- Abstract
Cryptochrome 4a (Cry4a) has been proposed as the sensor at the heart of the magnetic compass in migratory songbirds. Blue-light excitation of this protein produces magnetically sensitive flavin-tryptophan radical pairs whose properties suggest that Cry4a could indeed be suitable as a magnetoreceptor. Here, we use cavity ring-down spectroscopy to measure magnetic field effects on the kinetics of these radical pairs in modified Cry4a proteins from the migratory European robin and from nonmigratory pigeon and chicken. B1/2, a parameter that characterizes the magnetic field-dependence of the reactions, was found to be larger than expected on the basis of hyperfine interactions and to increase with the delay between pump and probe laser pulses. Semiclassical spin dynamics simulations show that this behavior is consistent with a singlet-triplet dephasing (STD) relaxation mechanism. Analysis of the experimental data gives dephasing rate constants, rSTD, in the range 3-6 × 107 s-1. A simple "toy" model due to Maeda, Miura, and Arai [Mol. Phys. 104, 1779-1788 (2006)] is used to shed light on the origin of the time-dependence and the nature of the STD mechanism. Under the conditions of the experiments, STD results in an exponential approach to spin equilibrium at a rate considerably slower than rSTD. We attribute the loss of singlet-triplet coherence to electron hopping between the second and third tryptophans of the electron transfer chain and comment on whether this process could explain differences in the magnetic sensitivity of robin, chicken, and pigeon Cry4a's., (© 2023 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).)
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- 2023
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29. No evidence for magnetic field effects on the behaviour of Drosophila.
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Bassetto M, Reichl T, Kobylkov D, Kattnig DR, Winklhofer M, Hore PJ, and Mouritsen H
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- Animals, Animal Migration, Cryptochromes metabolism, Songbirds physiology, Models, Animal, Escape Reaction, Maze Learning, Sample Size, Light, Magnetic Fields, Drosophila melanogaster physiology, Negative Results
- Abstract
Migratory songbirds have the remarkable ability to extract directional information from the Earth's magnetic field
1,2 . The exact mechanism of this light-dependent magnetic compass sense, however, is not fully understood. The most promising hypothesis focuses on the quantum spin dynamics of transient radical pairs formed in cryptochrome proteins in the retina3-5 . Frustratingly, much of the supporting evidence for this theory is circumstantial, largely because of the extreme challenges posed by genetic modification of wild birds. Drosophila has therefore been recruited as a model organism, and several influential reports of cryptochrome-mediated magnetic field effects on fly behaviour have been widely interpreted as support for a radical pair-based mechanism in birds6-23 . Here we report the results of an extensive study testing magnetic field effects on 97,658 flies moving in a two-arm maze and on 10,960 flies performing the spontaneous escape behaviour known as negative geotaxis. Under meticulously controlled conditions and with vast sample sizes, we have been unable to find evidence for magnetically sensitive behaviour in Drosophila. Moreover, after reassessment of the statistical approaches and sample sizes used in the studies that we tried to replicate, we suggest that many-if not all-of the original results were false positives. Our findings therefore cast considerable doubt on the existence of magnetic sensing in Drosophila and thus strongly suggest that night-migratory songbirds remain the organism of choice for elucidating the mechanism of light-dependent magnetoreception., (© 2023. The Author(s).)- Published
- 2023
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30. Dimerization of European Robin Cryptochrome 4a.
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Hanić M, Antill LM, Gehrckens AS, Schmidt J, Görtemaker K, Bartölke R, El-Baba TJ, Xu J, Koch KW, Mouritsen H, Benesch JLP, Hore PJ, and Solov'yov IA
- Subjects
- Animals, Dimerization, Light, Cryptochromes chemistry, Songbirds metabolism
- Abstract
Homo-dimer formation is important for the function of many proteins. Although dimeric forms of cryptochromes (Cry) have been found by crystallography and were recently observed in vitro for European robin Cry4a, little is known about the dimerization of avian Crys and the role it could play in the mechanism of magnetic sensing in migratory birds. Here, we present a combined experimental and computational investigation of the dimerization of robin Cry4a resulting from covalent and non-covalent interactions. Experimental studies using native mass spectrometry, mass spectrometric analysis of disulfide bonds, chemical cross-linking, and photometric measurements show that disulfide-linked dimers are routinely formed, that their formation is promoted by exposure to blue light, and that the most likely cysteines are C317 and C412. Computational modeling and molecular dynamics simulations were used to generate and assess a number of possible dimer structures. The relevance of these findings to the proposed role of Cry4a in avian magnetoreception is discussed.
- Published
- 2023
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31. Modeling spin relaxation in complex radical systems using MolSpin.
- Author
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Gerhards L, Nielsen C, Kattnig DR, Hore PJ, and Solov'yov IA
- Subjects
- Free Radicals, Magnetic Fields
- Abstract
Spin relaxation is an important aspect of the spin dynamics of free radicals and can have a significant impact on the outcome of their spin-selective reactions. Examples range from the use of radicals as spin qubits in quantum information processing to the radical pair reactions in proteins that may allow migratory birds to sense the direction of the Earth's magnetic field. Accurate modeling of spin relaxation, however, is non-trivial. Bloch-Redfield-Wangsness theory derives a quantum mechanical master equation from system-bath interactions in the Markovian limit that provides a comprehensive framework for describing spin relaxation. Unfortunately, the construction of the master equation is system-specific and often resource-heavy. To address this challenge, we introduce a generalized and efficient implementation of BRW theory as a new feature of the spin dynamics toolkit MolSpin which offers an easy-to-use approach for studying systems of reacting radicals of varying complexity., (© 2023 The Authors. Journal of Computational Chemistry published by Wiley Periodicals LLC.)
- Published
- 2023
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32. Upper bound for broadband radiofrequency field disruption of magnetic compass orientation in night-migratory songbirds.
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Leberecht B, Wong SY, Satish B, Döge S, Hindman J, Venkatraman L, Apte S, Haase K, Musielak I, Dautaj G, Solov'yov IA, Winklhofer M, Mouritsen H, and Hore PJ
- Subjects
- Animals, Photochemical Processes, Animal Migration, Magnetic Fields, Cryptochromes metabolism, Songbirds metabolism, Taxis Response
- Abstract
Night-migratory songbirds have a light-dependent magnetic compass sense, the mechanism of which is thought to depend on the photochemical formation of radical pairs in cryptochrome (Cry) proteins located in the retina. The finding that weak radiofrequency (RF) electromagnetic fields can prevent birds from orienting in the Earth's magnetic field has been regarded as a diagnostic test for this mechanism and as a potential source of information on the identities of the radicals. The maximum frequency that could cause such disorientation has been predicted to lie between 120 and 220 MHz for a flavin-tryptophan radical pair in Cry. Here we show that the magnetic orientation capabilities of Eurasian blackcaps ( Sylvia atricapilla ) are not affected by RF noise in the frequency bands 140 to 150 MHz and 235 to 245 MHz. From a consideration of its internal magnetic interactions, we argue that RF field effects on a flavin-containing radical-pair sensor should be approximately independent of frequency up to 116 MHz and that birds' sensitivity to RF disorientation should fall by about two orders of magnitude when the frequency exceeds 116 MHz. Taken together with our earlier finding that 75 to 85 MHz RF fields disrupt the magnetic orientation of blackcaps, these results provide compelling evidence that the magnetic compass of migratory birds operates by a radical pair mechanism.
- Published
- 2023
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33. Isotope Substitution Effects on the Magnetic Compass Properties of Cryptochrome-Based Radical Pairs: A Computational Study.
- Author
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Pažėra GJ, Benjamin P, Mouritsen H, and Hore PJ
- Subjects
- Magnetics, Flavins metabolism, Cryptochromes chemistry, Magnetic Fields
- Abstract
The biophysical mechanism of the magnetic compass sense of migratory songbirds is thought to rely on the photochemical reactions of flavin-containing radical pairs in cryptochrome proteins located in the birds' eyes. A consequence of this hypothesis is that the effect of the Earth's magnetic field on the quantum yields of reaction products should be sensitive to isotopic substitutions that modify the hyperfine interactions in the radicals. In this report, we use spin dynamics simulations to explore the effects of
1 H →2 H,12 C →13 C, and14 N →15 N isotopic substitutions on the functioning of cryptochrome 4a as a magnetic direction sensor. Two main conclusions emerge. (1) Uniform deuteration of the flavin chromophore appears to be the best way to boost the anisotropy of the magnetic field effect and to change its symmetry. (2)13 C substitution of three of the 12 flavin carbons, in particular C4, C4a, and C8α, seems to be the best recipe for attenuating the anisotropy. These predictions should give insight into the factors that control the magnetic sensitivity once spectroscopic techniques are available for measuring magnetic field effects on oriented protein samples.- Published
- 2023
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34. Magnetic field effects on radical pair reactions: estimation of B 1/2 for flavin-tryptophan radical pairs in cryptochromes.
- Author
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Wong SY, Benjamin P, and Hore PJ
- Subjects
- Organic Chemicals, Magnetic Fields, Flavins, Cryptochromes, Tryptophan metabolism
- Abstract
Magnetic field effects on the yields of radical pair reactions are often characterised by the "half-field" parameter, B
1/2 , which encodes useful information on spin relaxation, radical recombination kinetics and electron-electron couplings as well as electron-nuclear hyperfine interactions. Here we use a variety of spin dynamics simulation methods to estimate the hyperfine-only values of B1/2 for the flavin-tryptophan radical pair, [FAD˙- TrpH˙+ ], thought to be the detector in the magnetic compass sense of migratory songbirds. The main findings are: (a) in the absence of fast recombination and spin relaxation, [FAD˙- TrpH˙+ ] radical pairs in solution and in the putative magnetoreceptor protein, cryptochrome, have B1/2 ≈ 1.89 mT and 2.46 mT, respectively. (b) The widely used expression for B1/2 due to Weller et al. ( Chem. Phys. Lett , 1983, 96 , 24-27) is only applicable to small, short-lived (∼5 ns), rapidly tumbling radical pairs in solution, and is quantitatively unreliable in the context of magnetoreception. (c) In the absence of molecular tumbling, the low-field effect for [FAD˙- TrpH˙+ ] is predicted to be abolished by the anisotropic components of the hyperfine interactions. Armed with the 2.46 mT "base value" for cryptochrome, measurements of B1/2 can be used to understand the impact of spin relaxation on its performance as a magnetic compass sensor.- Published
- 2023
- Full Text
- View/download PDF
35. Effects of Dynamical Degrees of Freedom on Magnetic Compass Sensitivity: A Comparison of Plant and Avian Cryptochromes.
- Author
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Grüning G, Wong SY, Gerhards L, Schuhmann F, Kattnig DR, Hore PJ, and Solov'yov IA
- Subjects
- Animals, Tryptophan chemistry, Flavin-Adenine Dinucleotide metabolism, Magnetic Phenomena, Magnetic Fields, Cryptochromes chemistry, Columbidae metabolism
- Abstract
The magnetic compass of migratory birds is thought to rely on a radical pair reaction inside the blue-light photoreceptor protein cryptochrome. The sensitivity of such a sensor to weak external magnetic fields is determined by a variety of magnetic interactions, including electron-nuclear hyperfine interactions. Here, we investigate the implications of thermal motion, focusing on fluctuations in the dihedral and librational angles of flavin adenine dinucleotide (FAD) and tryptophan (Trp) radicals in cryptochrome 4a from European robin ( Erithacus rubecula , ErCry4a) and pigeon ( Columba livia , ClCry4a) and cryptochrome 1 from the plant Arabidopsis thaliana (AtCry1). Molecular dynamics simulations and density functional theory-derived hyperfine interactions are used to calculate the quantum yield of radical pair recombination dependent on the direction of the geomagnetic field. This quantity and various dynamical parameters are compared for [FAD
•- Trp•+ ] in ErCry4a, ClCry4a, and AtCry1, with TrpC or TrpD being the third and fourth components of the tryptophan triad/tetrad in the respective proteins. We find that (i) differences in the average dihedral angles in the radical pairs are small, (ii) the librational motions of TrpC•+ in the avian cryptochromes are appreciably smaller than in AtCry1, (iii) the rapid vibrational motions of the radicals leading to strong fluctuations in the hyperfine couplings affect the spin dynamics depending on the usage of instantaneous or time-averaged interactions. Future investigations of radical pair compass sensitivity should therefore not be based on single snapshots of the protein structure but should include the ensemble properties of the hyperfine interactions.- Published
- 2022
- Full Text
- View/download PDF
36. Updated guideline on equipment to manage difficult airways: Australian and New Zealand College of Anaesthetists.
- Author
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Endlich Y, Hore PJ, Baker PA, Beckmann LA, Bradley WP, Chan KLE, Chapman GA, Jephcott CGA, Kruger PS, Newton A, and Roessler P
- Subjects
- Humans, New Zealand, Australia, Universities, Anesthetists, Critical Care
- Abstract
The Australian and New Zealand College of Anaesthetists (ANZCA) recently reviewed and updated the guideline on equipment to manage a difficult airway. An ANZCA-established document development group, which included representatives from the Australasian College for Emergency Medicine and the College of Intensive Care Medicine of Australia and New Zealand, performed the review, which is based on expert consensus, an extensive literature review, and bi-nationwide consultation. The guideline (PG56(A) 2021, https://www.anzca.edu.au/getattachment/02fe1a4c-14f0-4ad1-8337-c281d26bfa17/PS56-Guideline-on-equipment-to-manage-difficult-airways) is accompanied by a detailed background paper (PG56(A)BP 2021, https://www.anzca.edu.au/getattachment/9ef4cd97-2f02-47fe-a63a-9f74fa7c68ac/PG56(A)BP-Guideline-on-equipment-to-manage-difficult-airways-Background-Paper), from which the current recommendations are reproduced on behalf of, and with the permission of, ANZCA. The updated 2021 guideline replaces the 2012 version and aims to provide an updated, objective, informed, transparent, and evidence-based review of equipment to manage difficult airways.
- Published
- 2022
- Full Text
- View/download PDF
37. Broadband 75-85 MHz radiofrequency fields disrupt magnetic compass orientation in night-migratory songbirds consistent with a flavin-based radical pair magnetoreceptor.
- Author
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Leberecht B, Kobylkov D, Karwinkel T, Döge S, Burnus L, Wong SY, Apte S, Haase K, Musielak I, Chetverikova R, Dautaj G, Bassetto M, Winklhofer M, Hore PJ, and Mouritsen H
- Subjects
- Animal Migration, Animals, Cryptochromes metabolism, Flavins, Magnetic Fields, Tryptophan, Songbirds metabolism, Taxis Response
- Abstract
The light-dependent magnetic compass sense of night-migratory songbirds can be disrupted by weak radiofrequency fields. This finding supports a quantum mechanical, radical-pair-based mechanism of magnetoreception as observed for isolated cryptochrome 4, a protein found in birds' retinas. The exact identity of the magnetically sensitive radicals in cryptochrome is uncertain in vivo, but their formation seems to require a bound flavin adenine dinucleotide chromophore and a chain of four tryptophan residues within the protein. Resulting from the hyperfine interactions of nuclear spins with the unpaired electrons, the sensitivity of the radicals to radiofrequency magnetic fields depends strongly on the number of magnetic nuclei (hydrogen and nitrogen atoms) they contain. Quantum-chemical calculations suggested that electromagnetic noise in the frequency range 75-85 MHz could give information about the identity of the radicals involved. Here, we show that broadband 75-85 MHz radiofrequency fields prevent a night-migratory songbird from using its magnetic compass in behavioural experiments. These results indicate that at least one of the components of the radical pair involved in the sensory process of avian magnetoreception must contain a substantial number of strong hyperfine interactions as would be the case if a flavin-tryptophan radical pair were the magnetic sensor., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
38. Radical quantum oscillations.
- Author
-
Hore PJ
- Abstract
Laser spectroscopy reveals spin quantum beats in electron transfer reactions.
- Published
- 2021
- Full Text
- View/download PDF
39. Cryptochrome magnetoreception: four tryptophans could be better than three.
- Author
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Wong SY, Wei Y, Mouritsen H, Solov'yov IA, and Hore PJ
- Subjects
- Animals, Magnetic Fields, Signal Transduction, Tryptophan, Cryptochromes metabolism, Songbirds
- Abstract
The biophysical mechanism of the magnetic compass sensor in migratory songbirds is thought to involve photo-induced radical pairs formed in cryptochrome (Cry) flavoproteins located in photoreceptor cells in the eyes. In Cry4a-the most likely of the six known avian Crys to have a magnetic sensing function-four radical pair states are formed sequentially by the stepwise transfer of an electron along a chain of four tryptophan residues to the photo-excited flavin. In purified Cry4a from the migratory European robin, the third of these flavin-tryptophan radical pairs is more magnetically sensitive than the fourth, consistent with the smaller separation of the radicals in the former. Here, we explore the idea that these two radical pair states of Cry4a could exist in rapid dynamic equilibrium such that the key magnetic and kinetic properties are weighted averages. Spin dynamics simulations suggest that the third radical pair is largely responsible for magnetic sensing while the fourth may be better placed to initiate magnetic signalling particularly if the terminal tryptophan radical can be reduced by a nearby tyrosine. Such an arrangement could have allowed independent optimization of the essential sensing and signalling functions of the protein. It might also rationalize why avian Cry4a has four tryptophans while Crys from plants have only three.
- Published
- 2021
- Full Text
- View/download PDF
40. Magnetic sensitivity of cryptochrome 4 from a migratory songbird.
- Author
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Xu J, Jarocha LE, Zollitsch T, Konowalczyk M, Henbest KB, Richert S, Golesworthy MJ, Schmidt J, Déjean V, Sowood DJC, Bassetto M, Luo J, Walton JR, Fleming J, Wei Y, Pitcher TL, Moise G, Herrmann M, Yin H, Wu H, Bartölke R, Käsehagen SJ, Horst S, Dautaj G, Murton PDF, Gehrckens AS, Chelliah Y, Takahashi JS, Koch KW, Weber S, Solov'yov IA, Xie C, Mackenzie SR, Timmel CR, Mouritsen H, and Hore PJ
- Subjects
- Animals, Avian Proteins genetics, Chickens, Columbidae, Retina, Animal Migration, Cryptochromes genetics, Magnetic Fields, Songbirds
- Abstract
Night-migratory songbirds are remarkably proficient navigators
1 . Flying alone and often over great distances, they use various directional cues including, crucially, a light-dependent magnetic compass2,3 . The mechanism of this compass has been suggested to rely on the quantum spin dynamics of photoinduced radical pairs in cryptochrome flavoproteins located in the retinas of the birds4-7 . Here we show that the photochemistry of cryptochrome 4 (CRY4) from the night-migratory European robin (Erithacus rubecula) is magnetically sensitive in vitro, and more so than CRY4 from two non-migratory bird species, chicken (Gallus gallus) and pigeon (Columba livia). Site-specific mutations of ErCRY4 reveal the roles of four successive flavin-tryptophan radical pairs in generating magnetic field effects and in stabilizing potential signalling states in a way that could enable sensing and signalling functions to be independently optimized in night-migratory birds.- Published
- 2021
- Full Text
- View/download PDF
41. Amplification of weak magnetic field effects on oscillating reactions.
- Author
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Player TC, Baxter EDA, Allatt S, and Hore PJ
- Abstract
We explore the possibility that chemical feedback and autocatalysis in oscillating chemical reactions could amplify weak magnetic field effects on the rate constant of one of the constituent reactions, assumed to proceed via a radical pair mechanism. Using the Brusselator model oscillator, we find that the amplitude of limit cycle oscillations in the concentrations of reaction intermediates can be extraordinarily sensitive to minute changes in the rate constant of the initiation step. The relevance of such amplification to biological effects of 50/60 Hz electromagnetic fields is discussed.
- Published
- 2021
- Full Text
- View/download PDF
42. Angular Precision of Radical Pair Compass Magnetoreceptors.
- Author
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Ren Y, Hiscock HG, and Hore PJ
- Subjects
- Animals, Cryptochromes, Magnetic Fields, Magnetics, Orientation, Animal Migration, Songbirds
- Abstract
The light-dependent magnetic compass sense of night-migratory songbirds is thought to rely on magnetically sensitive chemical reactions of radical pairs in cryptochrome proteins located in the birds' eyes. Recently, an information theory approach was developed that provides a strict lower bound on the precision with which a bird could estimate its head direction using only geomagnetic cues and a cryptochrome-based radical pair sensor. By means of this lower bound, we show here how the performance of the compass sense could be optimized by adjusting the orientation of cryptochrome molecules within photoreceptor cells, the distribution of cells around the retina, and the effects of the geomagnetic field on the photochemistry of the radical pair., (Copyright © 2021 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
43. Nuclear polarization effects in cryptochrome-based magnetoreception.
- Author
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Wong SY, Solov'yov IA, Hore PJ, and Kattnig DR
- Subjects
- Free Radicals chemistry, Magnetic Phenomena, Cell Nucleus chemistry, Cryptochromes chemistry, Molecular Dynamics Simulation
- Abstract
The mechanism of the magnetic compass sense of migratory songbirds is thought to involve magnetically sensitive chemical reactions of light-induced radical pairs in cryptochrome proteins located in the birds' eyes. However, it is not yet clear whether this mechanism would be sensitive enough to form the basis of a viable compass. In the present work, we report spin dynamics simulations of models of cryptochrome-based radical pairs to assess whether accumulation of nuclear spin polarization in multiple photocycles could lead to significant enhancements in the sensitivity with which the proteins respond to the direction of the geomagnetic field. Although buildup of nuclear polarization appears to offer sensitivity advantages in the more idealized model systems studied, we find that these enhancements do not carry over to conditions that more closely resemble the situation thought to exist in vivo. On the basis of these simulations, we conclude that buildup of nuclear polarization seems unlikely to be a source of significant improvements in the performance of cryptochrome-based radical pair magnetoreceptors.
- Published
- 2021
- Full Text
- View/download PDF
44. Source of magnetic field effects on the electrocatalytic reduction of CO 2 .
- Author
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Player TC and Hore PJ
- Abstract
We present an analysis of reported magnetic field effects (MFEs) on the yield of formic acid produced by electrocatalytic reduction of carbon dioxide at a nanoparticle tin electrode [H. P. Pan et al., J. Phys. Chem. Lett. 11, 48-53 (2020)]. Radical pair spin dynamics simulations are used to show that (1) the Δg mechanism favored by Pan et al. is not sufficient to explain the observed magneto-current, (2) field-dependent spin relaxation, resulting from the anisotropy of the g-tensor of CO
2 •- , combined with the coherent singlet-triplet interconversion arising from isotropic hyperfine and Zeeman interactions, can quantitatively account for the observed MFE, and (3) modification of hyperfine interactions by isotopic substitution (1 H →2 H and/or12 C →13 C) could be used to test both the proposed reaction mechanism and the interpretation presented here.- Published
- 2020
- Full Text
- View/download PDF
45. Spin chemistry.
- Author
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Hore PJ, Ivanov KL, and Wasielewski MR
- Published
- 2020
- Full Text
- View/download PDF
46. How quantum is radical pair magnetoreception?
- Author
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Fay TP, Lindoy LP, Manolopoulos DE, and Hore PJ
- Abstract
Currently the most likely mechanism of the magnetic compass sense in migratory songbirds relies on the coherent spin dynamics of pairs of photochemically formed radicals in the retina. Spin-conserving electron transfer reactions are thought to result in radical pairs whose near-degenerate electronic singlet and triplet states interconvert coherently as a result of hyperfine, exchange, and dipolar couplings and, crucially for a compass sensor, Zeeman interactions with the geomagnetic field. In this way, the yields of the reaction products can be influenced by magnetic interactions a million times smaller than kBT. The question we ask here is whether one can only account for the coherent spin dynamics using quantum mechanics. We find that semiclassical approximations to the spin dynamics of radical pairs only provide a satisfactory description of the anisotropic product yields when there is no electron spin-spin coupling, a situation unlikely to be consistent with a magnetic sensing function. Although these methods perform reasonably well for shorter-lived radical pairs with stronger electron-spin coupling, the accurate simulation of anisotropic magnetic field effects relevant to magnetoreception seems to require full quantum mechanical calculations.
- Published
- 2019
- Full Text
- View/download PDF
47. Quantum coherence in complex environments: general discussion.
- Author
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Alvertis AM, Barford W, Bourne Worster S, Burghardt I, Datta A, Dijkstra A, Fay T, Ghosh S, Grünbaum T, Habershon S, Hore PJ, Hutchinson D, Iyengar S, Jones AR, Jones G, Komarova K, Lawrence J, Léonard J, Litman Y, Mannouch J, Manolopoulos D, Martens C, Mondelo-Martell M, Picconi D, Plant D, Sakaushi K, Saller MAC, Schile A, Scholes GD, Segarra-Martí J, Segatta F, Troisi A, and Worth G
- Published
- 2019
- Full Text
- View/download PDF
48. Viability of superoxide-containing radical pairs as magnetoreceptors.
- Author
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Player TC and Hore PJ
- Subjects
- Magnetic Fields, Models, Chemical, Molecular Dynamics Simulation, Cryptochromes chemistry, Flavin-Adenine Dinucleotide chemistry, Superoxides chemistry
- Abstract
The ability of night-migratory songbirds to sense the direction of the Earth's magnetic field is increasingly attributed to a photochemical mechanism in which the magnetic field acts on transient radical pairs in cryptochrome flavoproteins located in the birds' eyes. The magnetically sensitive species is commonly assumed to be [FAD
•- TrpH•+ ], formed by sequential light-induced intraprotein electron transfers from a chain of tryptophan residues to the flavin adenine dinucleotide chromophore. However, some evidence points to superoxide, O2 •- , as an alternative partner for the flavin radical. The absence of hyperfine interactions in O2 •- could lead to a more sensitive magnetic compass, but only if the electron spin relaxation of the O2 •- radical is much slower than normally expected for a small mobile radical with an orbitally degenerate electronic ground state. In this study we use spin dynamics simulations to model the sensitivity of a flavin-superoxide radical pair to the direction of a 50 μT magnetic field. By varying parameters that characterize the local environment and molecular dynamics of the radicals, we identify the highly restrictive conditions under which a O2 •- -containing radical pair could form the basis of a geomagnetic compass sensor. We conclude that the involvement of superoxide in compass magnetoreception must remain highly speculative until further experimental evidence is forthcoming.- Published
- 2019
- Full Text
- View/download PDF
49. Electromagnetic 0.1-100 kHz noise does not disrupt orientation in a night-migrating songbird implying a spin coherence lifetime of less than 10 µs.
- Author
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Kobylkov D, Wynn J, Winklhofer M, Chetverikova R, Xu J, Hiscock H, Hore PJ, and Mouritsen H
- Subjects
- Animals, Electromagnetic Fields, Orientation physiology, Animal Migration, Circadian Rhythm, Noise, Songbirds, Taxis Response
- Abstract
According to the currently prevailing theory, the magnetic compass sense in night-migrating birds relies on a light-dependent radical-pair-based mechanism. It has been shown that radio waves at megahertz frequencies disrupt magnetic orientation in migratory birds, providing evidence for a quantum-mechanical origin of the magnetic compass. Still, many crucial properties, e.g. the lifetime of the proposed magnetically sensitive radical pair, remain unknown. The current study aims to estimate the spin coherence time of the radical pair, based on the behavioural responses of migratory birds to broadband electromagnetic fields covering the frequency band 0.1-100 kHz. A finding that the birds were unable to use their magnetic compass under these conditions would imply surprisingly long-lived (greater than 10 µs) spin coherence. However, we observed no effect of 0.1-100 kHz radiofrequency (RF) fields on the orientation of night-migratory Eurasian blackcaps ( Sylvia atricapilla ). This suggests that the lifetime of the spin coherence involved in magnetoreception is shorter than the period of the highest frequency RF fields used in this experiment (i.e. approx. 10 µs). This result, in combination with an earlier study showing that 20-450 kHz electromagnetic fields disrupt magnetic compass orientation, suggests that the spin coherence lifetime of the magnetically sensitive radical pair is in the range 2-10 µs.
- Published
- 2019
- Full Text
- View/download PDF
50. Navigating at night: fundamental limits on the sensitivity of radical pair magnetoreception under dim light.
- Author
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Hiscock HG, Hiscock TW, Kattnig DR, Scrivener T, Lewis AM, Manolopoulos DE, and Hore PJ
- Subjects
- Animal Migration radiation effects, Animals, Cryptochromes metabolism, Songbirds metabolism, Behavior, Animal radiation effects, Darkness, Magnetic Fields, Songbirds physiology
- Abstract
Night-migratory songbirds appear to sense the direction of the Earth's magnetic field via radical pair intermediates formed photochemically in cryptochrome flavoproteins contained in photoreceptor cells in their retinas. It is an open question whether this light-dependent mechanism could be sufficiently sensitive given the low-light levels experienced by nocturnal migrants. The scarcity of available photons results in significant uncertainty in the signal generated by the magnetoreceptors distributed around the retina. Here we use results from Information Theory to obtain a lower bound estimate of the precision with which a bird could orient itself using only geomagnetic cues. Our approach bypasses the current lack of knowledge about magnetic signal transduction and processing in vivo by computing the best-case compass precision under conditions where photons are in short supply. We use this method to assess the performance of three plausible cryptochrome-derived flavin-containing radical pairs as potential magnetoreceptors.
- Published
- 2019
- Full Text
- View/download PDF
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