137 results on '"Hoogenraad, C.C."'
Search Results
2. Stress and excitatory synapses: From health to disease
- Author
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Timmermans, W., Xiong, H., Hoogenraad, C.C., and Krugers, H.J.
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- 2013
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3. Step by step: Engineering kinesins to study cargo trafficking in neurons
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Hoogenraad, C.C., Hummel, Jessica Janina Anna, Hoogenraad, C.C., and Hummel, Jessica Janina Anna
- Published
- 2022
4. Neurons, Overview
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Hoogenraad, C.C., primary and Wierenga, C., additional
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- 2014
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5. Neuronal Microtubule Organization. The role of microtubule associated proteins during neuronal development
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Hoogenraad, C.C., Harterink, M., Cao, Yujie, Hoogenraad, C.C., Harterink, M., and Cao, Yujie
- Published
- 2021
6. The mechanism of kinesin inhibition by kinesin binding protein
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Atherton, Joe, Hummel, J.J.A., Olieric, N., Locke, J., Peña, A., Rosenfeld, S., Steinmetz, M., Hoogenraad, C.C., and Moores, Carolyn
- Subjects
viruses ,genetic processes ,bacteria ,macromolecular substances ,biochemical phenomena, metabolism, and nutrition ,bcs - Abstract
Subcellular compartmentalisation is necessary for eukaryotic cell function. Spatial and temporal regulation of kinesin activity is essential for building these local environments via control of intracellular cargo distribution. Kinesin binding protein (KBP) interacts with a subset of kinesins via their motor domains, inhibits their microtubule (MT) attachment and blocks their cellular function. However, its mechanisms of inhibition and selectivity have been unclear. Here we use cryo-electron microscopy to reveal the structure of KBP and of a KBP-kinesin motor domain complex. KBP is a TPR-containing, right-handed α-solenoid that sequesters the kinesin motor domain’s tubulin-binding surface, structurally distorting the motor domain and sterically blocking its MT attachment. KBP uses its α-solenoid concave face and edge loops to bind the kinesin motor domain, and selected structure-guided mutations disrupt KBP inhibition of kinesin transport in cells. The KBP-interacting motor domain surface contains motifs exclusively conserved in KBP-interacting kinesins, suggesting a basis for kinesin selectivity.
- Published
- 2020
7. Building axons: from formation to function
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Hoogenraad, C.C., Mac Gillavry, H.D., Lindhout, Feline Willeke Lindhout, Hoogenraad, C.C., Mac Gillavry, H.D., and Lindhout, Feline Willeke Lindhout
- Published
- 2020
8. MAPs of the neuron: Exploring the role of microtubule-associated proteins in neurodevelopment
- Author
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Hoogenraad, C.C., Harterink, M., Pan, Xingxiu, Hoogenraad, C.C., Harterink, M., and Pan, Xingxiu
- Published
- 2020
9. Contributors
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Airaksinen, M.S., primary, Anderson, S.A., additional, Anton, E.S., additional, Barrow, S.L., additional, Beaubien, F., additional, Belvindrah, R., additional, Ben-Ari, Y., additional, Bielle, F., additional, Boekhoorn, K., additional, Booker, A.B., additional, Borello, U., additional, Bradke, F., additional, Castellani, V., additional, Chao, M.V., additional, Charron, F., additional, Chedotal, A., additional, Cherubini, E., additional, Chisholm, A.D., additional, Cloutier, J.-F., additional, Cunningham, C.L., additional, Dalva, M.B., additional, de Castro, F., additional, Demarque, M., additional, Dickendesher, T.L., additional, Di Meglio, T., additional, Duan, Y., additional, Eavri, R., additional, Falk, J., additional, Feldheim, D.A., additional, Feller, M.B., additional, Filosa, A., additional, Flynn, K.C., additional, Foote, K.D., additional, Fukuda, A., additional, Furukawa, T., additional, Gage, F.H., additional, Gaiarsa, J.-L., additional, Garel, S., additional, Gerlitz, G., additional, Gibson, D.A., additional, Giger, R.J., additional, Griveau, A., additional, Grueber, W.B., additional, He, Z., additional, Hennig, M.H., additional, Hoogenraad, C.C., additional, Hübner, C.A., additional, Izzi, L., additional, Jeanneteau, F., additional, Kerschensteiner, D., additional, Klein, R., additional, Komuro, H., additional, Komuro, Y., additional, Kriegstein, A.R., additional, Kumada, T., additional, Leslie, J.H., additional, Li, G., additional, Llano, O., additional, Lledo, P.-M., additional, Lohmann, C., additional, LoTurco, J.J., additional, Lu, C.S., additional, Ludwig, A., additional, Luhmann, H.J., additional, Ma, L., additional, Le Marchand, S.J., additional, Martin, T.C., additional, McAllister, A.K., additional, McNeal, D., additional, Mizrahi, A., additional, Moya, F., additional, Munz, M., additional, Nakajima, K., additional, Nakanishi, Y., additional, Nedivi, E., additional, Nelson, S.B., additional, Noctor, S.C., additional, Nudo, R.J., additional, Ohno, N., additional, Okaty, B.W., additional, Petros, T.J., additional, Pfeffer, C.K., additional, Pierani, A., additional, Pleasure, S.J., additional, Polleux, F., additional, Prince, J.E.A., additional, Reiner, O., additional, Ribera, A.B., additional, Rijli, F.M., additional, Rivera, C., additional, Ruthazer, E.S., additional, Salinas, P.C., additional, Scheiffele, P., additional, Schreiner, D., additional, Sekine, K., additional, Sernagor, E., additional, Sigrist, S.J., additional, Sotelo, C., additional, Spitzer, N.C., additional, Stanco, A., additional, Stiess, M., additional, Suzuki, S.C., additional, Tabata, H., additional, Toni, N., additional, Uvarov, P., additional, Valdeolmillos, M., additional, Van Vactor, D., additional, Vinay, L., additional, Wang, F., additional, Wichmann, C., additional, Wong, R.O.L., additional, Yoshimatsu, T., additional, Zalc, B., additional, and Zhao, C., additional
- Published
- 2013
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10. Regulation of AMPA-Type Glutamate Receptor Trafficking
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Boekhoorn, K., primary and Hoogenraad, C.C., additional
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- 2013
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11. Contribution of CYLN2 and GTF2IRD1 to neurological and cognitive symptoms in Williams Syndrome
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van Hagen, J.M., van der Geest, J.N., van der Giessen, R.S., Lagers-van Haselen, G.C., Eussen, H.J.F.M.M., Gille, J.J.P., Govaerts, L.C.P., Wouters, C.H., de Coo, I.F.M., Hoogenraad, C.C., Koekkoek, S.K.E., Frens, M.A., van Camp, N., van der Linden, A., Jansweijer, M.C.E., Thorgeirsson, S.S., and De Zeeuw, C.I.
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- 2007
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12. Kinesin binding protein complexed with Kif15 motor domain
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Atherton, J., primary, Hummel, J.J.A., additional, Olieric, N., additional, Locke, J., additional, Pena, A., additional, Rosenfeld, S.S., additional, Steinmetz, M.O., additional, Hoogenraad, C.C., additional, and Moores, C.A., additional
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- 2020
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13. Kinesin binding protein (KBP)
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Atherton, J., primary, Hummel, J.J.A., additional, Olieric, N., additional, Locke, J., additional, Pena, A., additional, Rosenfeld, S.S., additional, Steinmetz, M.O., additional, Hoogenraad, C.C., additional, and Moores, C.A., additional
- Published
- 2020
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14. Microtubule complexed with Kif15 motor domain. Symmetrised asymmetric unit
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Atherton, J., primary, Hummel, J.J.A., additional, Olieric, N., additional, Locke, J., additional, Pena, A., additional, Rosenfeld, S.S., additional, Steinmetz, M.O., additional, Hoogenraad, C.C., additional, and Moores, C.A., additional
- Published
- 2020
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15. Dynein activating adaptor BICD2 controls radial migration of upper-layer cortical neurons in vivo
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Will, L. (Lena), Portegies, S. (Sybren), van Schelt, J. (Jasper), van Luyk, M. (Merel), Jaarsma, D. (Dick), Hoogenraad, C.C. (Casper), Will, L. (Lena), Portegies, S. (Sybren), van Schelt, J. (Jasper), van Luyk, M. (Merel), Jaarsma, D. (Dick), and Hoogenraad, C.C. (Casper)
- Abstract
For the proper organization of the six-layered mammalian neocortex it is required that neurons migrate radially from their place of birth towards their designated destination. The molecular machinery underlying this neuronal migration is still poorly understood. The dynein-adaptor protein BICD2 is associated with a spectrum of human neurologic
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- 2019
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16. The expanded clinical spectrum of anti-GABABR encephalitis and added value of KCTD16 autoantibodies
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Coevorden-Hameete, M.H. (M.) van, de Bruijn, M.A.A.M. (Marienke A A M), de Graaff, E. (Esther), Bastiaansen, D.A.E.M. (Danielle A E M), Schreurs, M.W.J. (Marco), Demmers, J.A.A. (Jeroen), Ramberger, M. (Melanie), Hulsenboom, E. (Esther), Nagtzaam, M.M.P. (Mariska M.P.), Boukhrissi, S. (Sanae), Veldink, J.H. (Jan), Verschuuren, J.J. (Jan), Hoogenraad, C.C. (Casper), Sillevis Smitt, P.A.E. (Peter), Titulaer, M.J. (Maarten), Coevorden-Hameete, M.H. (M.) van, de Bruijn, M.A.A.M. (Marienke A A M), de Graaff, E. (Esther), Bastiaansen, D.A.E.M. (Danielle A E M), Schreurs, M.W.J. (Marco), Demmers, J.A.A. (Jeroen), Ramberger, M. (Melanie), Hulsenboom, E. (Esther), Nagtzaam, M.M.P. (Mariska M.P.), Boukhrissi, S. (Sanae), Veldink, J.H. (Jan), Verschuuren, J.J. (Jan), Hoogenraad, C.C. (Casper), Sillevis Smitt, P.A.E. (Peter), and Titulaer, M.J. (Maarten)
- Abstract
In this study we report the clinical features of 32 patients with gamma aminobutyric acid B receptor (GABABR) antibodies, identify additional autoantibodies in patients with anti-GABABR encephalitis that mark the presence of an underlying small cell
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- 2019
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17. Robust, Sensitive, and Automated Phosphopeptide Enrichment Optimized for Low Sample Amounts Applied to Primary Hippocampal Neurons
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Post, Harm, Penning, Renske, Fitzpatrick, Martin, Garrigues, L.B., Wu, W., Mac Gillavry, H.D., Hoogenraad, C.C., Heck, A.J.R., Altelaar, A.F.M., Afd Biomol.Mass Spect. and Proteomics, Sub Biomol.Mass Spect. and Proteomics, Sub Cell Biology, Sub Biomol.Mass Spectrometry & Proteom., and Biomolecular Mass Spectrometry and Proteomics
- Subjects
0301 basic medicine ,Phosphopeptides ,Proteome ,Sample (material) ,hippocampal neurons ,BRAVO AssayMap ,Hippocampal formation ,Biochemistry ,Hippocampus ,03 medical and health sciences ,Ti(IV)-IMAC ,Tandem Mass Spectrometry ,Taverne ,Hippocampal neuron ,Animals ,Humans ,TiO2 ,Phosphorylation ,Fe(III)-IMAC ,EGF ,Neurons ,Chromatography ,Chemistry ,Phosphopeptide ,Ms analysis ,phosphoproteomics ,General Chemistry ,sensitivity ,quantification ,Rats ,030104 developmental biology ,phosphopeptide enrichment ,Chromatography, Liquid ,HeLa Cells - Abstract
Because of the low stoichiometry of protein phosphorylation, targeted enrichment prior to LC–MS/MS analysis is still essential. The trend in phosphoproteome analysis is shifting toward an increasing number of biological replicates per experiment, ideally starting from very low sample amounts, placing new demands on enrichment protocols to make them less labor-intensive, more sensitive, and less prone to variability. Here we assessed an automated enrichment protocol using Fe(III)-IMAC cartridges on an AssayMAP Bravo platform to meet these demands. The automated Fe(III)-IMAC-based enrichment workflow proved to be more effective when compared to a TiO2-based enrichment using the same platform and a manual Ti(IV)-IMAC-based enrichment workflow. As initial samples, a dilution series of both human HeLa cell and primary rat hippocampal neuron lysates was used, going down to 0.1 μg of peptide starting material. The optimized workflow proved to be efficient, sensitive, and reproducible, identifying, localizing, and quantifying thousands of phosphosites from just micrograms of starting material. To further test the automated workflow in genuine biological applications, we monitored EGF-induced signaling in hippocampal neurons, starting with only 200 000 primary cells, resulting in ∼50 μg of protein material. This revealed a comprehensive phosphoproteome, showing regulation of multiple members of the MAPK pathway and reduced phosphorylation status of two glutamate receptors involved in synaptic plasticity.
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- 2017
18. Axonal transport deficits in multiple sclerosis: spiraling into the abyss
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Berg, R. (Robert) van den, Hoogenraad, C.C. (Casper), Hintzen, R.Q. (Rogier), Berg, R. (Robert) van den, Hoogenraad, C.C. (Casper), and Hintzen, R.Q. (Rogier)
- Abstract
The transport of mitochondria and other cellular components along the axonal microtubule cytoskeleton plays an essential role in neuronal survival. Defects in this system have been linked to a large number of neurological disorders. In multiple sclerosis (MS) and associated models such as experimental autoimmune encephalomyelitis (EAE), alterations in axonal transport have been shown to exist before neurodegeneration occurs. Genome-wide association (GWA) studies have linked several motor proteins to MS susceptibility, while neuropathological studies have shown accumulations of proteins and organelles suggestive for transport deficits. A reduced effectiveness of axonal transport can lead to neurodegeneration through inhibition of mitochondrial motility, disruption of axoglial interaction or prevention of remyelination. In MS, demyelination leads to dysregulation of axonal transport, aggravated by the effects of TNF-alpha, nitric oxide and glutamate on the cytoskeleton. The combined effect of all these pathways is a vicious cycle in which a defective axonal transport system leads to an increase in ATP consumption through loss of membrane organization and a reduction in available ATP through inhibition of mitochondrial transport, resulting in even further inhibition of transport. The persistent activity of this positive feedback loop contributes to neurodegeneration in MS.
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- 2017
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19. Antibodies to TRIM46 are associated with paraneoplastic neurological syndromes
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Coevorden-Hameete, M.H. (M.) van, Beuningen, S.F.B. (Sam) van, Perrenoud, M. (Matthieu), Will, L. (Lena), Hulsenboom, E. (Esther), Demonet, J.-F. (Jean-Francois), Sabater, L. (Lidia), Kros, J.M. (Johan), Verschuuren, J.J. (Jan), Titulaer, M.J. (Maarten), Graaff, E. (Esther) de, Sillevis Smitt, P.A.E. (Peter), Hoogenraad, C.C. (Casper), Coevorden-Hameete, M.H. (M.) van, Beuningen, S.F.B. (Sam) van, Perrenoud, M. (Matthieu), Will, L. (Lena), Hulsenboom, E. (Esther), Demonet, J.-F. (Jean-Francois), Sabater, L. (Lidia), Kros, J.M. (Johan), Verschuuren, J.J. (Jan), Titulaer, M.J. (Maarten), Graaff, E. (Esther) de, Sillevis Smitt, P.A.E. (Peter), and Hoogenraad, C.C. (Casper)
- Abstract
Paraneoplastic neurological syndromes (PNS) are often characterized by the presence of antineuronal antibodies in patient serum or cerebrospinal fluid.The detection of antineuronal antibodies has proven to be a useful tool in PNS diagnosis and the search for an underlying tumor. Here, we describe three patients with autoantibodies to several epitopes of the axon initial segment protein tripartite motif 46 (TRIM46). We show that anti-TRIM46 antibodies are easy to detect in routine immunohistochemistry screening and can be confirmed by western blotting and cell-based assay. Anti-TRIM46 antibodies can occur in patients with diverse neurological syndromes and are associated with small-cell lung carcinoma.
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- 2017
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20. Robust, Sensitive, and Automated Phosphopeptide Enrichment Optimized for Low Sample Amounts Applied to Primary Hippocampal Neurons
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Afd Biomol.Mass Spect. and Proteomics, Sub Biomol.Mass Spect. and Proteomics, Sub Cell Biology, Sub Biomol.Mass Spectrometry & Proteom., Biomolecular Mass Spectrometry and Proteomics, Post, Harm, Penning, Renske, Fitzpatrick, Martin, Garrigues, L.B., Wu, W., Mac Gillavry, H.D., Hoogenraad, C.C., Heck, A.J.R., Altelaar, A.F.M., Afd Biomol.Mass Spect. and Proteomics, Sub Biomol.Mass Spect. and Proteomics, Sub Cell Biology, Sub Biomol.Mass Spectrometry & Proteom., Biomolecular Mass Spectrometry and Proteomics, Post, Harm, Penning, Renske, Fitzpatrick, Martin, Garrigues, L.B., Wu, W., Mac Gillavry, H.D., Hoogenraad, C.C., Heck, A.J.R., and Altelaar, A.F.M.
- Published
- 2017
21. Biophysical model of the role of actin remodeling on dendritic spine morphology
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Miermans, K., Kusters, R., Hoogenraad, C.C., Storm, C., Miermans, K., Kusters, R., Hoogenraad, C.C., and Storm, C.
- Abstract
Dendritic spines are small membranous structures that protrude from the neuronal dendrite. Each spine contains a synaptic contact site that may connect its parent dendrite to the axons of neighboring neurons. Dendritic spines are markedly distinct in shape and size, and certain types of stimulation prompt spines to evolve, in fairly predictable fashion, from thin nascent morphologies to the mushroom-like shapes associated with mature spines. It is well established that the remodeling of spines is strongly dependent upon the actin cytoskeleton inside the spine. A general framework that details the precise role of actin in directing the transitions between the various spine shapes is lacking. We address this issue, and present a quantitative, model-based scenario for spine plasticity validated using realistic and physiologically relevant parameters. Our model points to a crucial role for the actin cytoskeleton. In the early stages of spine formation, the interplay between the elastic properties of the spine membrane and the protrusive forces generated in the actin cytoskeleton propels the incipient spine. In the maturation stage, actin remodeling in the form of the combined dynamics of branched and bundled actin is required to form mature, mushroom-like spines. Importantly, our model shows that constricting the spine-neck aids in the stabilization of mature spines, thus pointing to a role in stabilization and maintenance for additional factors such as ring-like F-actin structures. Taken together, our model provides unique insights into the fundamental role of actin remodeling and polymerization forces during spine formation and maturation.
- Published
- 2017
22. Probing the interplay between dendritic spine morphology and membrane-bound diffusion
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Adrian, M., Kusters, R., Storm, C., Hoogenraad, C.C., Kapitein, L.C., Adrian, M., Kusters, R., Storm, C., Hoogenraad, C.C., and Kapitein, L.C.
- Abstract
Dendritic spines are protrusions along neuronal dendrites that harbor the majority of excitatory postsynapses. Their distinct morphology, often featuring a bulbous head and small neck that connects to the dendritic shaft, has been shown to facilitate compartmentalization of electrical and cytoplasmic signaling stimuli elicited at the synapse. The extent to which spine morphology also forms a barrier for membrane-bound diffusion has remained unclear. Recent simulations suggested that especially the diameter of the spine neck plays a limiting role in this process. Here, we examine the connection between spine morphology and membrane-bound diffusion through a combination of photoconversion, live-cell superresolution experiments, and numerical simulations. Local photoconversion was used to obtain the timescale of diffusive equilibration in spines and followed by global sparse photoconversion to determine spine morphologies with nanoscopic resolution. These morphologies were subsequently used to assess the role of morphology on the diffusive equilibration. From the simulations, we could determine a robust relation between the equilibration timescale and a generalized shape factor calculated using both spine neck width and neck length, as well as spine head size. Experimentally, we found that diffusive equilibration was often slower, but rarely faster than predicted from the simulations, indicating that other biological confounders further reduce membrane-bound diffusion in these spines. This shape-dependent membrane-bound diffusion in mature spines may contribute to spine-specific compartmentalization of neurotransmitter receptors and signaling molecules and thereby support long-term plasticity of synaptic contacts.
- Published
- 2017
23. Microtubule Organization and Microtubule-Associated Proteins (MAPs)
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Tortosa Binacua, E., Kapitein, L.C., Hoogenraad, C.C., Emoto, Kazuo, Wong, Rachel, Huang, Eric, Hoogenraad, Casper, Sub Cell Biology, and Celbiologie
- Subjects
MAP7 ,MAP9 ,MAP4 ,Microtubuleassociated protein ,MAP6 ,Microtubule ,Dendrite ,MAP2 ,Neuron ,MAP1 ,Tau ,Cytoskeleton - Abstract
Dendrites have a unique microtubule organization. In vertebrates, dendritic microtubules are organized in antiparallel bundles, oriented with their plus ends either pointing away or toward the soma. The mixed microtubule arrays control intracellular trafficking and local signaling pathways, and are essential for dendrite development and function. The organization of microtubule arrays largely depends on the combined function of different microtubule regulatory factors or generally named microtubule-associated proteins (MAPs). Classical MAPs, also called structural MAPs, were identified more than 20 years ago based on their ability to bind to and copurify with microtubules. Most classical MAPs bind along the microtubule lattice and regulate microtubule polymerization, bundling, and stabilization. Recent evidences suggest that classical MAPs also guide motor protein transport, interact with the actin cytoskeleton, and act in various neuronal signaling networks. Here, we give an overview of microtubule organization in dendrites and the role of classical MAPs in dendrite development, dendritic spine formation, and synaptic plasticity.
- Published
- 2016
24. A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large.
- Author
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Waaijers, S., Munoz, J., Berends, C., Ramalho, J.J., Goerdayal, S.S., Low, T.Y., Zoumaro-Djayoon, A.D., Hoffmann, M., Koorman, T., Tas, R.P., Harterink, M., Seelk, S., Kerver, J., Hoogenraad, C.C., Bossinger, O., Tursun, B., Heuvel, S. van den, Heck, A.J.R. van, Boxem, M., Waaijers, S., Munoz, J., Berends, C., Ramalho, J.J., Goerdayal, S.S., Low, T.Y., Zoumaro-Djayoon, A.D., Hoffmann, M., Koorman, T., Tas, R.P., Harterink, M., Seelk, S., Kerver, J., Hoogenraad, C.C., Bossinger, O., Tursun, B., Heuvel, S. van den, Heck, A.J.R. van, and Boxem, M.
- Abstract
Contains fulltext : 172544.pdf (publisher's version ) (Open Access), BACKGROUND: Affinity purification followed by mass spectrometry (AP/MS) is a widely used approach to identify protein interactions and complexes. In multicellular organisms, the accurate identification of protein complexes by AP/MS is complicated by the potential heterogeneity of complexes in different tissues. Here, we present an in vivo biotinylation-based approach for the tissue-specific purification of protein complexes from Caenorhabditis elegans. Tissue-specific biotinylation is achieved by the expression in select tissues of the bacterial biotin ligase BirA, which biotinylates proteins tagged with the Avi peptide. RESULTS: We generated N- and C-terminal tags combining GFP with the Avi peptide sequence, as well as four BirA driver lines expressing BirA ubiquitously and specifically in the seam and hyp7 epidermal cells, intestine, or neurons. We validated the ability of our approach to identify bona fide protein interactions by identifying the known LGL-1 interaction partners PAR-6 and PKC-3. Purification of the Discs large protein DLG-1 identified several candidate interaction partners, including the AAA-type ATPase ATAD-3 and the uncharacterized protein MAPH-1.1. We have identified the domains that mediate the DLG-1/ATAD-3 interaction, and show that this interaction contributes to C. elegans development. MAPH-1.1 co-purified specifically with DLG-1 purified from neurons, and shared limited homology with the microtubule-associated protein MAP1A, a known neuronal interaction partner of mammalian DLG4/PSD95. A CRISPR/Cas9-engineered GFP::MAPH-1.1 fusion was broadly expressed and co-localized with microtubules. CONCLUSIONS: The method we present here is able to purify protein complexes from specific tissues. We uncovered a series of DLG-1 interactors, and conclude that ATAD-3 is a biologically relevant interaction partner of DLG-1. Finally, we conclude that MAPH-1.1 is a microtubule-associated protein of the MAP1 family and a candidate neuron-specific interaction
- Published
- 2016
25. Rotarod motor performance and advanced spinal cord lesion image analysis refine assessment of neurodegeneration in experimental autoimmune encephalomyelitis
- Author
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Berg, R. (Robert) van den, Laman, J.D. (Jon), Meurs, M. (Marjan) van, Hintzen, R.Q. (Rogier), Hoogenraad, C.C. (Casper), Berg, R. (Robert) van den, Laman, J.D. (Jon), Meurs, M. (Marjan) van, Hintzen, R.Q. (Rogier), and Hoogenraad, C.C. (Casper)
- Abstract
_Background_ Experimental autoimmune encephalomyelitis (EAE) is a commonly used experimental model for multiple sclerosis (MS). Experience with this model mainly comes from the field of immunology, while data on its use in studying the neurodegenerative aspects of MS is scarce. _New method_ The aim of this study is to improve and refine methods to assess neurodegeneration and function in EAE. Using the rotarod, a tool used in neuroscience to monitor motor performance, we evaluated the correlation between motor performance, disease severity as measured using a clinical scale and area covered by inflammatory lesions. _Results_ The included parameters are highly correlated in a non-linear manner, with motor performance rapidly decreasing in the intermediate values of the clinical scale. The relation between motor performance and histopathological damage is exclusively determined by lesions in the ventral and lateral columns, based on a new method of analysis of the entire spinal cord. Using a set of definitions for distinct disease milestones, we quantified disease duration as well as severity. _Comparison with existing methods_ The rotarod measures motor performance in a more objective and quantitative manner compared to using a clinical score. The outcome showes a strong correlation to the surface area of inflammatory lesions in the motor systems of the spinal cord. _Conclusions_ These results provide an improved workflow for interpreting the outcome of EAE from a neurological point of view, with the eventual goal of dissecting neurodegeneration and evaluating neuroprotective drugs in EAE for application in MS.
- Published
- 2016
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26. Hereditary familial vestibular degenerative diseases
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Sun, J., Alphen, A.M. van, Wagenaar, M., Huygen, P.L.M., Hoogenraad, C.C., Hasson, T., Koekkoek, S.K., Bohne, B.A., and Zeeuw, C.I. de
- Subjects
Hearing and Communication Disorders ,otorhinolaryngologic diseases ,Gehoor en communicatie ,food and beverages ,sense organs - Abstract
Item does not contain fulltext Identification of genes involved in hereditary vestibular disease is growing at a remarkable pace. Mutant mouse technology can be an important tool for understanding the biological mechanism of human vestibular diseases.
- Published
- 2001
27. Chapter 43 - Regulation of AMPA-Type Glutamate Receptor Trafficking
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Boekhoorn, K. and Hoogenraad, C.C.
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- 2013
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28. Sorting out polarized transport mechanisms in neurons
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Hoogenraad, C.C., Jaworski, J., Kapitein, L.C., Lipka, J., Hoogenraad, C.C., Jaworski, J., Kapitein, L.C., and Lipka, J.
- Published
- 2015
29. Resolving bundled microtubules using anti-tubulin nanobodies
- Author
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Mikhaylova, M. (Marina), Cloin, B.M.C. (Bas), Finan, K. (Kieran), Berg, R. (Robert) van den, Teeuw, J. (Jalmar), Kijanka, M.M. (Marta M.), Sokolowski, M. (Mikolaj), Katrukha, E.A. (Eugene), Maidorn, M. (Manuel), Opazo, F. (Felipe), Moutel, S. (Sandrine), Vantard, M. (Marylin), Perez, F. (Frank), Van Bergen En Henegouwen, P.M.P. (P. M P), Hoogenraad, C.C. (Casper), Ewers, H. (Helge), Kapitein, L.C. (Lukas), Mikhaylova, M. (Marina), Cloin, B.M.C. (Bas), Finan, K. (Kieran), Berg, R. (Robert) van den, Teeuw, J. (Jalmar), Kijanka, M.M. (Marta M.), Sokolowski, M. (Mikolaj), Katrukha, E.A. (Eugene), Maidorn, M. (Manuel), Opazo, F. (Felipe), Moutel, S. (Sandrine), Vantard, M. (Marylin), Perez, F. (Frank), Van Bergen En Henegouwen, P.M.P. (P. M P), Hoogenraad, C.C. (Casper), Ewers, H. (Helge), and Kapitein, L.C. (Lukas)
- Abstract
Microtubules are hollow biopolymers of 25-nm diameter and are key constituents of the cytoskeleton. In neurons, microtubules are organized differently between axons and dendrites, but their precise organization in different compartments is not completely understood. Super-resolution microscopy techniques can detect specific structures at an increased resolution, but the narrow spacing between neuronal microtubules poses challenges because most existing labelling strategies increase the effective microtubule diameter by 20-40 nm and will thereby blend neighbouring microtubules into one structure. Here we develop single-chain antibody fragments (nanobodies) against tubulin to achieve super-resolution imaging of microtubules with a decreased apparent diameter. To test the resolving power of these novel probes, we generate microtubule bundles with a known spacing of 50-70 nm and successfully resolve individual microtubules. Individual bundled microtubules can also be resolved in different mammalian cells, including hippocampal neurons, allowing novel insights into fundamental mechanisms of microtubule organization in cell- and neurobiology.
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- 2015
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30. Cytoplasmic dynein and its regulatory proteins in Golgi pathology in nervous system disorders
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Jaarsma, D. (Dick), Hoogenraad, C.C. (Casper), Jaarsma, D. (Dick), and Hoogenraad, C.C. (Casper)
- Abstract
The Golgi apparatus is a dynamic organelle involved in processing and sorting of lipids and proteins. In neurons, the Golgi apparatus is important for the development of axons and dendrites and maintenance of their highly complex polarized morphology. The motor protein complex cytoplasmic dynein has an important role in Golgi apparatus positioning and function. Together, with dynactin and other regulatory factors it drives microtubule minus-end directed motility of Golgi membranes. Inhibition of dynein results in fragmentation and dispersion of the Golgi ribbon in the neuronal cell body, resembling the Golgi abnormalities observed in some neurodegenerative disorders, in particular motor neuron diseases. Mutations in dynein and its regulatory factors, including the dynactin subunit p150Glued, BICD2 and Lis-1, are associated with several human nervous system disorders, including cortical malformation and motor neuropathy. Here we review the role of dynein and its regulatory factors in Golgi function and positioning, and the potential role of dynein malfunction in causing Golgi apparatus abnormalities in nervous system disorders.
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- 2015
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31. Spatio-temperal analysis of molecular determinants of neuronal degeneration in the aging mouse cerebellum
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de Graaf, E.L., Vermeij, W.P., de Waard, M.C., Rijksen, Y., van der Pluijm, I., Hoogenraad, C.C., Hoeijmakers, J.H.J., Altelaar, A.F.M., Heck, A.J.R., Biomolecular Mass Spectrometry and Proteomics, Celbiologie, Sub Biomol.Mass Spectrometry & Proteom., Sub Cell Biology, Sub Biomol.Mass Spect. and Proteomics, Molecular Genetics, Neurosciences, Biomolecular Mass Spectrometry and Proteomics, Celbiologie, Sub Biomol.Mass Spectrometry & Proteom., Sub Cell Biology, Sub Biomol.Mass Spect. and Proteomics, Intensive care medicine, and ICaR - Circulation and metabolism
- Subjects
Premature aging ,Male ,Cerebellum ,Aging ,DNA Repair ,Proteome ,DNA damage ,Purkinje cell ,Quantitative proteomics ,Nerve Tissue Proteins ,Biology ,Biochemistry ,Analytical Chemistry ,Synapse ,03 medical and health sciences ,Mice ,Purkinje Cells ,0302 clinical medicine ,medicine ,Animals ,Molecular Biology ,Cell Shape ,030304 developmental biology ,Mice, Knockout ,0303 health sciences ,Research ,Anatomy ,Endonucleases ,Cell biology ,DNA-Binding Proteins ,Mice, Inbred C57BL ,medicine.anatomical_structure ,International (English) ,Nerve Degeneration ,Female ,Synaptic signaling ,Neuron ,030217 neurology & neurosurgery - Abstract
The accumulation of cellular damage, including DNA damage, is hypothesized to contribute to aging-related neurodegenerative changes. DNA excision repair cross-complementing group 1 (Ercc1) knock-out mice represent an accepted model of neuronal aging, showing gradual neurodegenerative changes, including loss of synaptic contacts and cell body shrinkage. Here, we used the Purkinje cell-specific Ercc1 DNA-repair knock-out mouse model to study aging in the mouse cerebellum. We performed an in-depth quantitative proteomics analysis, using stable isotope dimethyl labeling, to decipher changes in protein expression between the early (8 weeks), intermediate (16 weeks), and late (26 weeks) stages of the phenotypically aging Ercc1 knock-out and healthy littermate control mice. The expression of over 5,200 proteins from the cerebellum was compared quantitatively, whereby 79 proteins (i.e. 1.5%) were found to be substantially regulated during aging. Nearly all of these molecular markers of the early aging onset belonged to a strongly interconnected network involved in excitatory synaptic signaling. Using immunohistological staining, we obtained temporal and spatial profiles of these markers confirming not only the proteomics data but in addition revealed how the change in protein expression correlates to synaptic changes in the cerebellum. In summary, this study provides a highly comprehensive spatial and temporal view of the dynamic changes in the cerebellum and Purkinje cell signaling in particular, indicating that synapse signaling is one of the first processes to be affected in this premature aging model, leading to neuron morphological changes, neuron degeneration, inflammation, and ultimately behavior disorders.
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- 2013
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32. Identification of Srp9 as a febrile seizure susceptibility gene
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Hessel, E.V.S. (Ellen V. S.), de Wit, M. (Marina), Wolterink-Donselaar, I.G. (Inge G.), Karst, H., de Graaff, E. (Esther), Lith, H.A. (H.) van, de Bruijn, E. (Ewart), de Sonnaville, S. (Sophietje), Verbeek, N.E. (Nienke), Lindhout, D. (Dick), de Kovel, C.G.F. (Carolien G. F.), Koeleman, B.P.C. (Bobby), Kempen, M.J.A. (M. J A) van, Brilstra, E. (Eva), Cuppen, E. (Edwin), Loos, M. (Maarten), Spijker, S., Kan, A.A. (Anne A.), Baars, S.E. (Susanne E.), Rijen, P.C. (Peter) van, Gosselaar, P.H. (Peter H.), Groot Koerkamp, M.J.A. (Marian J. A.), Holstege, F.C.P. (Frank), Duijn, C.M. (Cornelia) van, Vergeer, J.M. (Jeanette), Moll, H.A. (Henriette A.), Taubøll, E. (Erik), Heuser, K. (Kjell), Ramakers, G.M.J. (Geert M. J.), Pasterkamp, R.J. (Jeroen), Nieuwenhuizen, O. (Onno) van, Hoogenraad, C.C. (Casper), Kas, M.J.H. (Martien), Graan, P.N.E. (Pierre) de, Hessel, E.V.S. (Ellen V. S.), de Wit, M. (Marina), Wolterink-Donselaar, I.G. (Inge G.), Karst, H., de Graaff, E. (Esther), Lith, H.A. (H.) van, de Bruijn, E. (Ewart), de Sonnaville, S. (Sophietje), Verbeek, N.E. (Nienke), Lindhout, D. (Dick), de Kovel, C.G.F. (Carolien G. F.), Koeleman, B.P.C. (Bobby), Kempen, M.J.A. (M. J A) van, Brilstra, E. (Eva), Cuppen, E. (Edwin), Loos, M. (Maarten), Spijker, S., Kan, A.A. (Anne A.), Baars, S.E. (Susanne E.), Rijen, P.C. (Peter) van, Gosselaar, P.H. (Peter H.), Groot Koerkamp, M.J.A. (Marian J. A.), Holstege, F.C.P. (Frank), Duijn, C.M. (Cornelia) van, Vergeer, J.M. (Jeanette), Moll, H.A. (Henriette A.), Taubøll, E. (Erik), Heuser, K. (Kjell), Ramakers, G.M.J. (Geert M. J.), Pasterkamp, R.J. (Jeroen), Nieuwenhuizen, O. (Onno) van, Hoogenraad, C.C. (Casper), Kas, M.J.H. (Martien), and Graan, P.N.E. (Pierre) de
- Abstract
Objective: Febrile seizures (FS) are the most common seizure type in young children. Complex FS are a risk factor for mesial temporal lobe epilepsy (mTLE). To identify new FS susceptibility genes we used a forward genetic strategy in mice and subsequently analyzed candidate genes in humans. Methods: We mapped a quantitative trait locus (QTL1) for hyperthermia-induced FS on mouse chromosome 1, containing the signal recognition particle 9 (Srp9) gene. Effects of differential Srp9 expression were assessed in vivo and in vitro. Hippocampal SRP9 expression and genetic association were analyzed in FS and mTLE patients. Results: Srp9 was differentially expressed between parental strains C57BL/6J and A/J. Chromosome substitution strain 1 (CSS1) mice exhibited lower FS susceptibility and Srp9 expression than C57BL/6J mice. In vivo knockdown of brain Srp9 reduced FS susceptibility. Mice with reduced Srp9 expression and FS susceptibility, exhibited reduced hippocampal AMPA and NMDA currents. Downregulation of neuronal Srp9 reduced surface expression of AMPA receptor subunit GluA1. mTLE patients with antecedent FS had higher SRP9 expression than patients without. SRP9 promoter SNP rs12403575(G/A) was genetically associated with FS and mTLE. Interpretation: Our findings identify SRP9 as a novel FS susceptibility gene and indicate that SRP9 conveys its effects through endoplasmic reticulum (ER)-dependent synthesis and trafficking of membrane proteins, such as glutamate receptors. Discovery of this new FS gene and mechanism may provide new leads for early diagnosis and treatment of children with complex FS at risk for mTLE.
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- 2014
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33. Golgi fragmentation precedes neuromuscular denervation and is associated with endosome abnormalities in SOD1-ALS mouse motor neurons
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Dis, V. (Vera) van, Kuijpers, M. (Marijn), Haasdijk, E.D. (Elize), Teuling, E. (Eva), Oakes, S.A. (Scott A.), Hoogenraad, C.C. (Casper), Jaarsma, D. (Dick), Dis, V. (Vera) van, Kuijpers, M. (Marijn), Haasdijk, E.D. (Elize), Teuling, E. (Eva), Oakes, S.A. (Scott A.), Hoogenraad, C.C. (Casper), and Jaarsma, D. (Dick)
- Abstract
Background: Fragmentation of stacked cisterns of the Golgi apparatus into dispersed smaller elements is a feature associated with degeneration of neurons in amyotrophic lateral sclerosis (ALS) and some other neurodegenerative disorders. However, the role of Golgi fragmentation in motor neuron degeneration is not well understood. Results: Here we use a SOD1-ALS mouse model (low-copy Gurney G93A-SOD1 mouse) to show that motor neurons with Golgi fragmentation are retrogradely labeled by intramuscularly injected CTB (beta subunit of cholera toxin), indicating that Golgi fragmentation precedes neuromuscular denervation and axon retraction. We further show that Golgi fragmentation may occur in the absence of and precede two other pathological markers, i.e. somatodendritic SOD1 inclusions, and the induction of ATF3 expression. In addition, we show that Golgi fragmentation is associated with an altered dendritic organization of the Golgi apparatus, does not depend on intact apoptotic machinery, and is facilitated in transgenic mice with impaired retrograde dynein-dependent transport (BICD2-N mice). A connection to altered dynein-dependent transport also is suggested by reduced expression of endosomal markers in neurons with Golgi fragmentation, which also occurs in neurons with impaired dynein function. Conclusions: Together the data indicate that Golgi fragmentation is a very early event in the pathological cascade in ALS that is associated with altered organization of intracellular trafficking.
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- 2014
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34. A role for Bicaudal-D2 in radial cerebellar granule cell migration
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Jaarsma, D. (Dick), Berg, R. (Robert) van den, Wulf, P. (Phebe), Erp, S. (Susan) van, Keijzer, N. (Nanda), Schlager, M.A. (Max), Graaff, E. (Esther) de, Zeeuw, C.I. (Chris) de, Pasterkamp, R.J. (Jeroen), Akhmanova, A.S. (Anna), Hoogenraad, C.C. (Casper), Jaarsma, D. (Dick), Berg, R. (Robert) van den, Wulf, P. (Phebe), Erp, S. (Susan) van, Keijzer, N. (Nanda), Schlager, M.A. (Max), Graaff, E. (Esther) de, Zeeuw, C.I. (Chris) de, Pasterkamp, R.J. (Jeroen), Akhmanova, A.S. (Anna), and Hoogenraad, C.C. (Casper)
- Abstract
Bicaudal-D (BICD) belongs to an evolutionary conserved family of dynein adaptor proteins. It was first described in Drosophila as an essential factor in fly oogenesis and embryogenesis. Missense mutations in a human BICD homologue, BICD2, have been linked to a dominant mild early onset form of spinal muscular atrophy. Here we further examine the in vivo function of BICD2 in Bicd2 knockout mice. BICD2-deficient mice develop disrupted laminar organization of cerebral cortex and the cerebellum, pointing to impaired radial neuronal migration. Using astrocyte and granule cell specific inactivation of BICD2, we show that the cerebellar migration defect is entirely dependent upon BICD2 expression in Bergmann glia cells. Proteomics analysis reveals that Bicd2 mutant mice have an altered composition of extracellular matrix proteins produced by glia cells. These findings demonstrate an essential non-cell-autonomous role of BICD2 in neuronal cell migration, which might be connected to cargo trafficking pathways in glia cells.
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- 2014
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35. Barriers in the brain : resolving dendritic spine morphology and compartmentalization
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Adrian, M., Kusters, R.P.T., Wierenga, C.J., Storm, C., Hoogenraad, C.C., Kapitein, L.C., Adrian, M., Kusters, R.P.T., Wierenga, C.J., Storm, C., Hoogenraad, C.C., and Kapitein, L.C.
- Abstract
Dendritic spines are micron-sized protrusions that harbor the majority of excitatory synapses in the central nervous system. The head of the spine is connected to the dendritic shaft by a 50–400 nm thin membrane tube, called the spine neck, which has been hypothesized to confine biochemical and electric signals within the spine compartment. Such compartmentalization could minimize interspinal crosstalk and thereby support spine-specific synapse plasticity. However, to what extent compartmentalization is governed by spine morphology, and in particular the diameter of the spine neck, has remained unresolved. Here, we review recent advances in tool development – both experimental and theoretical – that facilitate studying the role of the spine neck in compartmentalization. Special emphasis is given to recent advances in microscopy methods and quantitative modeling applications as we discuss compartmentalization of biochemical signals, membrane receptors and electrical signals in spines. Multidisciplinary approaches should help to answer how dendritic spine architecture affects the cellular and molecular processes required for synapse maintenance and modulation.
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- 2014
36. Psychiatric phenomena as initial manifestation of encephalitis by anti-NMDAR antibodies
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Maat, P. (Peter), Graaff, E. (Esther) de, Beveren, N.J.M. (Nico) van, Hulsenboom, E. (Esther), Verdijk, R.M. (Robert), Koorengevel, K.M. (Kathelijne), Duijn, M.M. (Martijn) van, Hooijkaas, H. (Herbert), Hoogenraad, C.C. (Casper), Sillevis Smitt, P.A.E. (Peter), Maat, P. (Peter), Graaff, E. (Esther) de, Beveren, N.J.M. (Nico) van, Hulsenboom, E. (Esther), Verdijk, R.M. (Robert), Koorengevel, K.M. (Kathelijne), Duijn, M.M. (Martijn) van, Hooijkaas, H. (Herbert), Hoogenraad, C.C. (Casper), and Sillevis Smitt, P.A.E. (Peter)
- Abstract
Objective Autoimmune encephalitis associated with autoantibodies against the N-methyl-d-aspartate receptor (NMDAR) often presents with behavioural change. Our objective was to describe in detail the psychiatric presentation and pathways to care in order to aid the early diagnosis of NMDAR encephalitis. Methods Sera and cerebrospinal fluid (CSF) from patients with suspected NMDAR encephalitis were tested on HEK 293 cells transfected with the NR1 subunit of the NMDAR. Clinical information was obtained from the referring psychiatrists and neurologists and by review of the clinical records. Results Samples from 15 patients (13 female, 2 male, mean age 24 years, range 5-56 years) tested anti-NMDAR positive. Twelve of the 15 patients (80%) presented with prominent psychiatric symptoms and 8 were initially referred to a psychiatric service. The most prominent initial psychiatric symptoms were anxiety in seven (47%), behavioural change (often bizarre) in six (40%) and agitation in five (33%). All patients developed psychiatric symptoms in the first 6 weeks of illness. Thirteen patients received psychotropic medications: antipsychotics in 12 and benzodiazepines in 11. Treating physicians considered the psychotropic medication not effective in 11 patients resul
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- 2013
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37. Amyotrophic lateral sclerosis (ALS)-associated VAPB-P56S inclusions represent an ER quality control compartment
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Kuijpers, M. (Marijn), Dis, V. (Vera) van, Haasdijk, E.D. (Elize), Harterink, M. (Martin), Vocking, K. (Karin), Post, J.A. (Jan A.), Scheper, W., Hoogenraad, C.C. (Casper), Jaarsma, D. (Dick), Kuijpers, M. (Marijn), Dis, V. (Vera) van, Haasdijk, E.D. (Elize), Harterink, M. (Martin), Vocking, K. (Karin), Post, J.A. (Jan A.), Scheper, W., Hoogenraad, C.C. (Casper), and Jaarsma, D. (Dick)
- Abstract
BACKGROUND: Protein aggregation and the formation of intracellular inclusions are a central feature of many neurodegenerative disorders, but precise knowledge about their pathogenic role is lacking in most instances. Here we have characterized inclusions formed in transgenic mice carrying the P56S mutant form of VAPB that causes various motor neuron syndromes including ALS8.RESULTS: Inclusions in motor neurons of VAPB-P56S transgenic mice are characterized by the presence of smooth ER-like tubular profiles, and are immunoreactive for factors that operate in the ER associated degradation (ERAD) pathway, including p97/VCP, Derlin-1, and the ER membrane chaperone BAP31. The presence of these inclusions does not correlate with signs of axonal and neuronal degeneration, and axotomy leads to their gradual disappearance, indicating that they represent reversible structures. Inhibition of the proteasome and knockdown of the ER membrane chaperone BAP31 increased the size of mutant VAPB inclusions in primary neuron cultures, while knockdown of TEB4, an ERAD ubiquitin-protein ligase, reduced their size. Mutant VAPB did not codistribute with mutant forms of seipin that are associated with an autosomal dominant motor neuron disease, and accumulate in a protective ER derived compartment termed ERPO (ER protective organelle) in neurons.CONCLUSIONS: The data indicate that the VAPB-P56S inclusions represent a novel reversible ER quality control compartment that is formed when the amount of mutant VAPB exceeds the capacity of the ERAD pathway and that isolates misfolded and aggregated VAPB from the rest of the ER. The presence of this quality control compartment reveals an additional level of flexibility of neurons to cope with misfolded protein stress in the ER.
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- 2013
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38. Microtubule-based transport -basic mechanisms, traffic rules and role in neurological pathogenesis
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Franker, M.A.M. (Mariella), Hoogenraad, C.C. (Casper), Franker, M.A.M. (Mariella), and Hoogenraad, C.C. (Casper)
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Microtubule-based transport is essential for neuronal function because of the large distances that must be traveled by various building blocks and cellular materials. Recent studies in various model systems have unraveled several regulatory mechanisms and traffic rules that control the specificity, directionality and delivery of neuronal cargos. Local microtubule cues, opposing motor activity and cargoadaptors that regulate motor activity control microtubule-based transport in neurons. Impairment of intracellular transport is detrimental to neurons and has emerged as a common factor in several neurological disorders. Genetic approaches have revealed strong links between intracellular transport processes and the pathogenesis of neurological diseases in both the central and peripheral nervous system. This Commentary highlights recent advances in these areas and discusses the transport defects that are associated with the development of neurological diseases.
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- 2013
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39. Developmental and Activity-Dependent miRNA Expression Profiling in Primary Hippocampal Neuron Cultures
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Spronsen, M. (Myrrhe) van, Battum, E.Y. (Eljo) van, Kuijpers, M. (Marijn), Vangoor, V.R. (Vamshidhar), Rietman, M.L. (M. Liset), Pothof, J. (Joris), Gumy, L.F. (Laura), IJcken, W.F.J. (Wilfred) van, Akhmanova, A.S. (Anna), Pasterkamp, R.J. (Jeroen), Hoogenraad, C.C. (Casper), Spronsen, M. (Myrrhe) van, Battum, E.Y. (Eljo) van, Kuijpers, M. (Marijn), Vangoor, V.R. (Vamshidhar), Rietman, M.L. (M. Liset), Pothof, J. (Joris), Gumy, L.F. (Laura), IJcken, W.F.J. (Wilfred) van, Akhmanova, A.S. (Anna), Pasterkamp, R.J. (Jeroen), and Hoogenraad, C.C. (Casper)
- Abstract
MicroRNAs (miRNAs) are evolutionarily conserved non-coding RNAs of ∼22 nucleotides that regulate gene expression at the level of translation and play vital roles in hippocampal neuron development, function and plasticity. Here, we performed a systematic and in-depth analysis of miRNA expression profiles in cultured hippocampal neurons during development and after induction of neuronal activity. MiRNA profiling of primary hippocampal cultures was carried out using locked nucleic-acid-based miRNA arrays. The expression of 264 different miRNAs was tested in young neurons, at various developmental stages (stage 2-4) and in mature fully differentiated neurons (stage 5) following the induction of neuronal activity using chemical stimulation protocols. We identified 210 miRNAs in mature hippocampal neurons; the expression of most neuronal miRNAs is low at early stages of development and steadily increases during neuronal differentiation. We found a specific subset of 14 miRNAs with reduced expression at stage 3 and showed that sustained expression of these miRNAs stimulates axonal outgrowth. Expression profiling following induction of neuronal activity demonstrates that 51 miRNAs, including miR-134, miR-146, miR-181, miR-185, miR-191 and miR-200a show altered patterns of expression after NMDA receptor-dependent plasticity, and 31 miRNAs, including miR-107, miR-134, miR-470 and miR-546 were upregulated by homeostatic plasticity protocols. Our results indicate that specific miRNA expression profiles correlate with changes in neuronal development and neuronal activity. Identification and characterization of miRNA targets may further elucidate translational control mechanisms involved in hippocampal development, differentiation and activity-depended processes.
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- 2013
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40. Spatio-temporal analysis of molecular determinants of neuronal degeneration in the aging mouse cerebellum
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Graaf, E.L. (Erik) de, Vermeij, W.P. (Wilbert), Waard, M.C. (Monique) de, Rijksen, Y.M. (Yvonne), Pluijm, I. (Ingrid) van der, Hoogenraad, C.C. (Casper), Hoeijmakers, J.H.J. (Jan), Altelaar, A.F.M. (Maarten), Heck, A.J.R. (Albert), Graaf, E.L. (Erik) de, Vermeij, W.P. (Wilbert), Waard, M.C. (Monique) de, Rijksen, Y.M. (Yvonne), Pluijm, I. (Ingrid) van der, Hoogenraad, C.C. (Casper), Hoeijmakers, J.H.J. (Jan), Altelaar, A.F.M. (Maarten), and Heck, A.J.R. (Albert)
- Abstract
The accumulation of cellular damage, including DNA damage, is hypothesized to contribute to aging-related neurodegenerative changes. DNA excision repair cross-complementing group 1 (Ercc1) knock-out mice represent an accepted model of neuronal aging, showing gradual neurodegenerative changes, including loss of synaptic contacts and cell body shrinkage. Here, we used the Purkinje cell-specific Ercc1 DNA-repair knockout mouse model to study aging in the mouse cerebellum. We performed an in-depth quantitative proteomics analysis, using stable isotope dimethyl labeling, to decipher changes in protein expression between the early (8 weeks), intermediate (16 weeks), and late (26 weeks) stages of the phenotypically aging Ercc1 knock-out and healthy littermate control mice. The expression of over 5,200 proteins from the cerebellum was compared quantitatively, whereby 79 proteins ( i.e. 1.5%) were found to be substantially regulated during aging. Nearly all of these molecular markers of the early aging onset belonged to a strongly interconnected network involved in excitatory synaptic signaling. Using immunohistological staining, we obtained temporal and spatial profiles of these markers confirming not only the proteomics data but in addition revealed how the change in protein expression correlates to synaptic changes in the cerebellum. In summary, this study provides a highly comprehensive spatial and temporal view of the dynamic changes in the cerebellum and Purkinje cell signaling in particular, indicating that synapse signaling is one of the first processes to be affected in this premature aging model, leading to neuron morphological changes, neuron degeneration, inflammation, and ultimately behavior disorders.
- Published
- 2013
- Full Text
- View/download PDF
41. Spatio-temperal analysis of molecular determinants of neuronal degeneration in the aging mouse cerebellum
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Biomolecular Mass Spectrometry and Proteomics, Celbiologie, Sub Biomol.Mass Spectrometry & Proteom., Sub Cell Biology, Sub Biomol.Mass Spect. and Proteomics, de Graaf, E.L., Vermeij, W.P., de Waard, M.C., Rijksen, Y., van der Pluijm, I., Hoogenraad, C.C., Hoeijmakers, J.H.J., Altelaar, A.F.M., Heck, A.J.R., Biomolecular Mass Spectrometry and Proteomics, Celbiologie, Sub Biomol.Mass Spectrometry & Proteom., Sub Cell Biology, Sub Biomol.Mass Spect. and Proteomics, de Graaf, E.L., Vermeij, W.P., de Waard, M.C., Rijksen, Y., van der Pluijm, I., Hoogenraad, C.C., Hoeijmakers, J.H.J., Altelaar, A.F.M., and Heck, A.J.R.
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- 2013
42. Targeted mutation of Cyln2 in the Williams syndrome critical region links CLIP-115 haploinsufficiency toneurodevelopmental abnormalities in mice : erratum
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Hoogenraad, C.C., Koekkoek, B., Akhmanova, A., Krugers, H., Dortland, B., Miedema, M., van Alphen, A., Kistler, W., Jaegle, M., Koutsourakis, M., van Camp, Nadja, Verhoye, Marleen, Van Der Linden, Anne-Marie, Kaverina, I., Grosveld, F., de Zeeuw, C.I., and Galjart, N.
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- 2002
43. Cellulaire dynamica – beweging in ons brein
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Hoogenraad, C.C. and Hoogenraad, C.C.
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In deze publieke les zal ik u het komende half uur de achtergronden van mijn onderzoeksgebied ‘celbiologie van zenuwcellen’ en mijn visie op de relatie tussen fundamenteel onderzoek en onze maatschappij met u bespreken. De celbiologie en neurobiologie zijn onderzoeksgebieden die de geheimen van het leven willen begrijpen en gebruiken. Ik zal u kennis laten maken met moleculen en celbiologische processen in onze hersenen, die bepalen of wij gezond zijn of niet. Ik wil met name de dynamiek – de beweging - van zenuwcellen met u bespreken.
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- 2012
44. Identification of delta/notch-like epidermal growth factor-related receptor as the Tr antigen in paraneoplastic cerebellar degeneration
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Graaff, E. (Esther) de, Maat, P. (Peter), Hulsenboom, E. (Esther), Berg, R. (Robert) van den, Bent, M.J. (Martin) van den, Demmers, J.A.A. (Jeroen), Lugtenburg, P.J. (Pieternella), Hoogenraad, C.C. (Casper), Sillevis Smitt, P.A.E. (Peter), Graaff, E. (Esther) de, Maat, P. (Peter), Hulsenboom, E. (Esther), Berg, R. (Robert) van den, Bent, M.J. (Martin) van den, Demmers, J.A.A. (Jeroen), Lugtenburg, P.J. (Pieternella), Hoogenraad, C.C. (Casper), and Sillevis Smitt, P.A.E. (Peter)
- Abstract
Objective: Anti-Tr is among the better described autoantibodies in paraneoplastic cerebellar degeneration (PCD) combined with Hodgkin lymphoma (HL); however, the Tr antigen remains unidentified. Methods: We used immunoprecipitation of total rat brain extract followed by mass spectrometry to identify the antigen recognized by anti-Tr-positive sera. By Western blotting and cell-based assays, we tested a total of 12 anti-Tr-positive and 246 control sera and determined the region of the epitope recognized by the anti-Tr antibodies. Deletion and mutant constructs were generated to further map the antigenic region. Results: Mass spectrometry analysis of immunopurified rat brain extract using 4 different anti-Tr-positive sera led to the identification of Delta/Notch-like epidermal growth factor-related receptor (DNER) as the Tr antigen. All but 1 of 246 control samples were negative in the HeLa cell-based screening assay, whereas 12 of the 12 anti-Tr-positive sera stained hemagglutinin-tagged DNER-expressing cells. Only 1 control subject with HL but no ataxia was found to be both DNER and Tr positive. Using deletion constructs, we pinpointed the main epitope to the extracellular domain. Knockdown of endogenous DNER in hippocampal and N-glycosylation mutations abolished the anti-Tr staining, indicating that glycosylation of DNER is required for it to be recognized by anti-Tr antibodies. Interpretation: DNER is the antigen detected by anti-Tr-positive sera. Presence of anti-Tr antibodies in patients with PCD and HL or HL only can now be screened quickly and reliably by using a cell-based screening assay.
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- 2012
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45. BICD2, dynactin, and LIS1 cooperate in regulating dynein recruitment to cellular structures
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Splinter, D. (Daniël), Razafsky, D.S. (David), Schlager, M.A. (Max), Serra-Marques, A. (Andrea), Grigoriev, I. (Ilya), Demmers, J.A.A. (Jeroen), Keijzer, N. (Nanda), Jiang, K. (Kai), Poser, S., Hyman, A. (Anthony), Hoogenraad, C.C. (Casper), King, S.J. (Stephen), Akhmanova, A.S. (Anna), Splinter, D. (Daniël), Razafsky, D.S. (David), Schlager, M.A. (Max), Serra-Marques, A. (Andrea), Grigoriev, I. (Ilya), Demmers, J.A.A. (Jeroen), Keijzer, N. (Nanda), Jiang, K. (Kai), Poser, S., Hyman, A. (Anthony), Hoogenraad, C.C. (Casper), King, S.J. (Stephen), and Akhmanova, A.S. (Anna)
- Abstract
Cytoplasmic dynein is the major microtubule minus-end-directed cellular motor. Most dynein activities require dynactin, but the mechanisms regulating cargo-dependent dynein-dynactin interaction are poorly understood. In this study, we focus on dynein-dynactin recruitment to cargo by the conserved motor adaptor Bicaudal D2 (BICD2). We show that dynein and dynactin depend on each other for BICD2-mediated targeting to cargo and that BICD2 N-terminus (BICD2-N) strongly promotes stable interaction between dynein and dynactin both in vitro and in vivo. Direct visualization of dynein in live cells indicates that by itself the triple BICD2-N-dynein-dynactin complex is unable to interact with either cargo or microtubules. However, tethering of BICD2-N to different membranes promotes their microtubule minus-end-directed motility. We further show that LIS1 is required for dynein-mediated transport induced by membrane tethering of BICD2-N and that LIS1 contributes to dynein accumulation at microtubule plus ends and BICD2-positive cellular structures. Our results demonstrate that dynein recruitment to cargo requires concerted action of multiple dynein cofactors.
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- 2012
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46. Microtubule plus-end tracking proteins SLAIN1/2 and ch-TOG promote axonal development
- Author
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Vaart, B. (Babet) van der, Franker, M.A.M. (Mariella), Kuijpers, M. (Marijn), Hua, W. (Wei), Bouchet, B.P. (Benjamin Pierre), Jiang, K. (Kai), Grigoriev, I. (Ilya), Hoogenraad, C.C. (Casper), Akhmanova, A.S. (Anna), Vaart, B. (Babet) van der, Franker, M.A.M. (Mariella), Kuijpers, M. (Marijn), Hua, W. (Wei), Bouchet, B.P. (Benjamin Pierre), Jiang, K. (Kai), Grigoriev, I. (Ilya), Hoogenraad, C.C. (Casper), and Akhmanova, A.S. (Anna)
- Abstract
Development, polarization, structural integrity, and plasticity of neuronal cells critically depend on the microtubule network and its dynamic properties. SLAIN1 and SLAIN2 are microtubule plus-end tracking proteins that have been recently identified as regulators of microtubule dynamics. SLAINs are targeted to microtubule tips through an interaction with the core components of microtubule plus-end tracking protein network, End Binding family members. SLAINs promote persistent microtubule growth by recruiting the microtubule polymerase ch-TOG to microtubule plus-ends. Here, we show that SLAIN1/2 and ch-TOG-proteins are highly enriched in brain and are expressed throughout mouse brain development. Disruption of the SLAIN-ch-TOG complex in cultured primary rat hippo campal neurons by RNA interference-mediated knockdown and a dominant-negative approach perturbs microtubule growth by increasing catastrophe frequency and inhibits axon extension during neuronal development. Our study shows that proper control of microtubule dynamics is important for axon elongation in developing neurons.
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- 2012
- Full Text
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47. Cellulaire dynamica – beweging in ons brein
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Celbiologie, Sub Cell Biology, Hoogenraad, C.C., Celbiologie, Sub Cell Biology, and Hoogenraad, C.C.
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- 2012
48. Cellulaire dynamica – beweging in ons brein
- Author
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Cell Biology, Neurobiology and Biophysics, Sub Cell Biology, Hoogenraad, C.C., Cell Biology, Neurobiology and Biophysics, Sub Cell Biology, and Hoogenraad, C.C.
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- 2012
49. SLAIN2 links microtubule plus end-tracking proteins and controls microtubule growth in interphase
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Vaart, B. (Babet) van der, Manatschal, C. (Cristina), Grigoriev, I. (Ilya), Olieric, V. (Vincent), Gouveia, S.M., Bjelić, S. (Saša), Demmers, J.A.A. (Jeroen), Vorobjev, I. (Ivan), Hoogenraad, C.C. (Casper), Steinmetz, M.O. (Michel), Akhmanova, A.S. (Anna), Vaart, B. (Babet) van der, Manatschal, C. (Cristina), Grigoriev, I. (Ilya), Olieric, V. (Vincent), Gouveia, S.M., Bjelić, S. (Saša), Demmers, J.A.A. (Jeroen), Vorobjev, I. (Ivan), Hoogenraad, C.C. (Casper), Steinmetz, M.O. (Michel), and Akhmanova, A.S. (Anna)
- Abstract
The ends of growing microtubules (MTs) accumulate a set of diverse factors known as MT plus end-tracking proteins (+TIPs), which control microtubule dynamics and organization. In this paper, we identify SLAIN2 as a key component of +TIP interaction networks. We showed that the C-terminal part of SLAIN2 bound to end-binding proteins (EBs), cytoplasmic linker proteins (CLIPs), and CLIP-associated proteins and characterized in detail the interaction of SLAIN2 with EB1 and CLIP-170. Furthermore, we found that the N-terminal part of SLAIN2 interacted with ch-TOG, the mammalian homologue of the MT polymerase XMAP215. Through its multiple interactions, SLAIN2 enhanced ch-TOG accumulation at MT plus ends and, as a consequence, strongly stimulated processive MT polymerization in interphase cells. Depletion or disruption of the SLAIN2-ch-TOG complex led to disorganization of the radial MT array. During mitosis, SLAIN2 became highly phosphorylated, and its interaction with EBs and ch-TOG was inhibited. Our study provides new insights into the molecular mechanisms underlying cell cycle-specific regulation of MT polymerization and the organization of the MT network.
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- 2011
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50. Absence of common somatic alterations in genes on 1p and 19q in oligodendrogliomas
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Bralten, L.B.C. (Linda), Nouwens, S. (Stephan), Kockx, C. (Christel), Erdem-Eraslan, L. (Lale), Hoogenraad, C.C. (Casper), Kros, J.M. (Johan), Moorhouse, M.J. (Michael), Smitt, P.A.S., Spek, P.J. (Peter) van der, IJcken, W.F.J. (Wilfred) van, Stubbs, A.P. (Andrew), French, P.J. (Pim), Bralten, L.B.C. (Linda), Nouwens, S. (Stephan), Kockx, C. (Christel), Erdem-Eraslan, L. (Lale), Hoogenraad, C.C. (Casper), Kros, J.M. (Johan), Moorhouse, M.J. (Michael), Smitt, P.A.S., Spek, P.J. (Peter) van der, IJcken, W.F.J. (Wilfred) van, Stubbs, A.P. (Andrew), and French, P.J. (Pim)
- Abstract
A common and histologically well defined subtype of glioma are the oligodendroglial brain tumors. Approximately 70% of all oligodendrogliomas have a combined loss of the entire 1p and 19q chromosomal arms. This remarkably high frequency suggests that the remaining arms harbor yet to be identified tumor suppressor genes. Identification of these causal genetic changes in oligodendrogliomas is important because they form direct targets for treatment. In this study we therefore performed targeted resequencing of all exons, microRNAs, splice sites and promoter regions residing on 1p and 19q on 7 oligodendrogliomas and 4 matched controls. Only one missense mutation was identified in a single sample in the ARHGEF16 gene. This mutation lies within- and disrupts the conserved PDZ binding domain. No similar ARHGEF16 mutations or deletions were found in a larger set of oligodendrogliomas. The absence of common somatic changes within genes located on 1p and 19q in three out of four samples indicates that no additional "second hit" is required to drive oncogenic transformation on either chromosomal arm.
- Published
- 2011
- Full Text
- View/download PDF
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