57 results on '"Homayounieh F"'
Search Results
2. Central nervous system involvement in Erdheim-Chester disease: a magnetic resonance imaging study.
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Zahergivar A, Firouzabadi FD, Homayounieh F, Golagha M, Huda F, Biassou N, Shah R, Nikpanah M, Mirmomen M, Farhadi F, Dave RH, Shekhar S, Gahl WA, Estrada-Veras JI, Malayeri AA, and O'Brien K
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- Humans, Male, Female, Middle Aged, Aged, Adult, Adolescent, Child, Aged, 80 and over, Young Adult, Child, Preschool, Retrospective Studies, Proto-Oncogene Proteins B-raf genetics, Brain diagnostic imaging, Brain pathology, Erdheim-Chester Disease diagnostic imaging, Erdheim-Chester Disease genetics, Magnetic Resonance Imaging methods
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Purpose: To characterize brain MR imaging findings in a cohort of 58 patients with ECD and to evaluate relationship between these findings and the BRAF
V600E pathogenic variant., Methods: ECD patients of any gender and ethnicity, aged 2-80 years, with biopsy-confirmed ECD were eligible to enroll in this study. Two radiologists experienced in evaluating ECD CNS disease activity reviewed MRI studies. Any disagreements were resolved by a third reader. Frequencies of observed lesions were reported. The association between the distribution of CNS lesions and the BRAFV600E pathogenic variant was evaluated using Fisher's exact test and odd ratio., Results: The brain MRI of all 58 patients with ECD revealed some form of CNS lesions, most likely due to ECD. Cortical lesions were noted in 27/58 (46.6 %) patients, cerebellar lesions in 15/58 (25.9 %) patients, brain stem lesions in 17/58 cases (29.3 %), and pituitary lesions in 10/58 (17.2 %) patients. Premature cortical atrophy was observed in 8/58 (13.8 %) patients. BRAFV600E pathogenic variant was significantly associated with cerebellar lesions (p = 0.016) and bilateral brain stem lesions (p = 0.043). A trend toward significance was noted for cerebral atrophy (p = 0.053)., Conclusion: The study provides valuable insights into the brain MRI findings in ECD and their association with the BRAFV600E pathogenic variant, particularly its association in cases with bilateral lesions. We are expanding our understanding of how ECD affects cerebral structures. Knowledge of MRI CNS lesion patterns and their association with mutations such as the BRAF variant is helpful for both prognosis and clinical management., Competing Interests: Declaration of competing interest The authors declare that they have no competing interests., (Published by Elsevier Inc.)- Published
- 2024
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3. A Prospective Study of the Diagnostic Performance of Photon-Counting CT Compared With MRI in the Characterization of Renal Masses.
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Homayounieh F, Gopal N, Firouzabadi FD, Sahbaee P, Yazdian P, Nikpanah M, Do M, Wang M, Gautam R, Ball MW, Pritchard WF, Jones EC, Wen H, Linehan WM, Turkbey EB, and Malayeri AA
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- Humans, Female, Middle Aged, Male, Prospective Studies, Reproducibility of Results, Sensitivity and Specificity, Aged, Adult, Photons, Kidney diagnostic imaging, Kidney pathology, Kidney Neoplasms diagnostic imaging, Kidney Neoplasms pathology, Magnetic Resonance Imaging methods, Tomography, X-Ray Computed methods
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Objectives: The aim of this study was to assess the interreader reliability and per-RCC sensitivity of high-resolution photon-counting computed tomography (PCCT) in the detection and characterization of renal masses in comparison to MRI., Materials and Methods: This prospective study included 24 adult patients (mean age, 52 ± 14 years; 14 females) who underwent PCCT (using an investigational whole-body CT scanner) and abdominal MRI within a 3-month time interval and underwent surgical resection (partial or radical nephrectomy) with histopathology (n = 70 lesions). Of the 24 patients, 17 had a germline mutation and the remainder were sporadic cases. Two radiologists (R1 and R2) assessed the PCCT and corresponding MRI studies with a 3-week washout period between reviews. Readers recorded the number of lesions in each patient and graded each targeted lesion's characteristic features, dimensions, and location. Data were analyzed using a 2-sample t test, Fisher exact test, and weighted kappa., Results: In patients with von Hippel-Lindau mutation, R1 identified a similar number of lesions suspicious for neoplasm on both modalities (51 vs 50, P = 0.94), whereas R2 identified more suspicious lesions on PCCT scans as compared with MRI studies (80 vs 56, P = 0.12). R1 and R2 characterized more lesions as predominantly solid in MRIs (R1: 58/70 in MRI vs 52/70 in PCCT, P < 0.001; R2: 60/70 in MRI vs 55/70 in PCCT, P < 0.001). R1 and R2 performed similarly in detecting neoplastic lesions on PCCT and MRI studies (R1: 94% vs 90%, P = 0.5; R2: 73% vs 79%, P = 0.13)., Conclusions: The interreader reliability and per-RCC sensitivity of PCCT scans acquired on an investigational whole-body PCCT were comparable to MRI scans in detecting and characterizing renal masses., Clinical Relevance Statement: PCCT scans have comparable performance to MRI studies while allowing for improved characterization of the internal composition of lesions due to material decomposition analysis. Future generations of this imaging modality may reveal additional advantages of PCCT over MRI., Competing Interests: Conflicts of interest and sources of funding: This research was supported, in part, by the Intramural Research Program of the National Institutes of Health Clinical Center. The National Institutes of Health and Siemens Medical Solutions have a Cooperative Research and Development Agreement providing financial and material support including the photon-counting computed tomography system. One of the study co-authors (Pooyan Sahbaee) is an employee of Siemens Healthineers. The rest of the authors have nothing to declare. Authors unaffiliated with Siemens had full control over the data and information presented in this article., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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4. Non-Invasive Tumor Grade Evaluation in Von Hippel-Lindau-Associated Clear Cell Renal Cell Carcinoma: A Magnetic Resonance Imaging-Based Study.
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Zahergivar A, Yazdian Anari P, Mendhiratta N, Lay N, Singh S, Dehghani Firouzabadi F, Chaurasia A, Golagha M, Homayounieh F, Gautam R, Harmon S, Turkbey E, Merino M, Jones EC, Ball MW, Turkbey B, Linehan WM, and Malayeri AA
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- Humans, Female, Male, Middle Aged, Retrospective Studies, Adult, Aged, von Hippel-Lindau Disease diagnostic imaging, von Hippel-Lindau Disease complications, ROC Curve, Image Processing, Computer-Assisted methods, Prognosis, Carcinoma, Renal Cell diagnostic imaging, Carcinoma, Renal Cell pathology, Kidney Neoplasms diagnostic imaging, Kidney Neoplasms pathology, Magnetic Resonance Imaging methods, Neoplasm Grading
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Background: Pathology grading is an essential step for the treatment and evaluation of the prognosis in patients with clear cell renal cell carcinoma (ccRCC)., Purpose: To investigate the utility of texture analysis in evaluating Fuhrman grades of renal tumors in patients with Von Hippel-Lindau (VHL)-associated ccRCC, aiming to improve non-invasive diagnosis and personalized treatment., Study Type: Retrospective analysis of a prospectively maintained cohort., Population: One hundred and thirty-six patients, 84 (61%) males and 52 (39%) females with pathology-proven ccRCC with a mean age of 52.8 ± 12.7 from 2010 to 2023., Field Strength and Sequences: 1.5 and 3 T MRIs. Segmentations were performed on the T1-weighted 3-minute delayed sequence and then registered on pre-contrast, T1-weighted arterial and venous sequences., Assessment: A total of 404 lesions, 345 low-grade tumors, and 59 high-grade tumors were segmented using ITK-SNAP on a T1-weighted 3-minute delayed sequence of MRI. Radiomics features were extracted from pre-contrast, T1-weighted arterial, venous, and delayed post-contrast sequences. Preprocessing techniques were employed to address class imbalances. Features were then rescaled to normalize the numeric values. We developed a stacked model combining random forest and XGBoost to assess tumor grades using radiomics signatures., Statistical Tests: The model's performance was evaluated using positive predictive value (PPV), sensitivity, F1 score, area under the curve of receiver operating characteristic curve, and Matthews correlation coefficient. Using Monte Carlo technique, the average performance of 100 benchmarks of 85% train and 15% test was reported., Results: The best model displayed an accuracy of 0.79. For low-grade tumor detection, a sensitivity of 0.79, a PPV of 0.95, and an F1 score of 0.86 were obtained. For high-grade tumor detection, a sensitivity of 0.78, PPV of 0.39, and F1 score of 0.52 were reported., Data Conclusion: Radiomics analysis shows promise in classifying pathology grades non-invasively for patients with VHL-associated ccRCC, potentially leading to better diagnosis and personalized treatment., Level of Evidence: 1 TECHNICAL EFFICACY: Stage 2., (Published 2024. This article is a U.S. Government work and is in the public domain in the USA.)
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- 2024
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5. Correlation of Radiomics with Treatment Response in Liver Metastases.
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Mostafavi L, Homayounieh F, Lades F, Primak A, Muse V, Harris GJ, Kalra MK, and Digumarthy SR
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- Humans, Female, Middle Aged, Treatment Outcome, Response Evaluation Criteria in Solid Tumors, Contrast Media, Radiographic Image Interpretation, Computer-Assisted methods, Aged, Adult, Disease Progression, Radiomics, Liver Neoplasms secondary, Liver Neoplasms diagnostic imaging, Tomography, X-Ray Computed methods, Breast Neoplasms diagnostic imaging, Breast Neoplasms pathology
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Rationale and Objectives: To assess differences in radiomics derived from semi-automatic segmentation of liver metastases for stable disease (SD), partial response (PR), and progressive disease (PD) based on RECIST1.1 and to assess if radiomics alone at baseline can predict response., Materials and Methods: Our IRB-approved study included 203 women (mean age 54 ± 11 years) with metastatic liver disease from breast cancer. All patients underwent contrast abdomen-pelvis CT in the portal venous phase at two points: baseline (pre-treatment) and follow-up (between 3 and 12 months following treatment). Patients were subcategorized into three subgroups based on RECIST 1.1 criteria (Response Evaluation Criteria in Solid Tumors version 1.1): 66 with SD, 69 with PR, and 68 with PD on follow-up CT. The deidentified baseline and follow-up CT images were exported to the radiomics prototype. The prototype enabled semi-automatic segmentation of the target liver lesions for the extraction of first and high order radiomics. Statistical analyses with logistic regression and random forest classifiers were performed to differentiate SD from PD and PR., Results: There was no significant difference between the radiomics on the baseline and follow-up CT images of patients with SD (area under the curve (AUC): 0.3). Random forest classifier differentiated patients with PR with an AUC of 0.845. The most relevant feature was the large dependence emphasis's high and low pass wavelet filter (derived gray level dependence matrix features). Random forest classifier differentiated PD with an AUC of 0.731, with the most relevant feature being the surface-to-volume ratio. There was no difference in radiomics among the three groups at baseline; therefore, a response could not be predicted., Conclusion: Radiomics of liver metastases with semi-automatic segmentation demonstrate differences between SD from PR and PD., Summary Statement: Semiautomatic segmentation and radiomics of metastatic liver disease demonstrate differences in SD from the PR and progressive metastatic on the baseline and follow-up CT. Despite substantial variations in the scanners, acquisition, and reconstruction parameters, radiomics had an AUC of 0.84-0.89 for differentiating stable hepatic metastases from decreasing and increasing metastatic disease., Competing Interests: Declaration of Competing Interest Two co-authors (F.L., A.P.) are employees of Siemens Medical Solutions. Our institution received research grant from Siemens Healthineers, USA, for unrelated projects. Dr. Digumarthy (SRD) provides independent image analysis for hospital-contracted clinical research trials programs for Merck, Pfizer, Bristol Myers Squibb, Novartis, Roche, Polaris, Cascadian, Abbvie, Gradalis, Bayer, Zai laboratories, Biengen, Resonance, Analise. Research grants from Lunit Inc, GE, Qure AI, and honorarium from Siemens., (Copyright © 2024 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.)
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- 2024
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6. Deep learning algorithm (YOLOv7) for automated renal mass detection on contrast-enhanced MRI: a 2D and 2.5D evaluation of results.
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Anari PY, Lay N, Zahergivar A, Firouzabadi FD, Chaurasia A, Golagha M, Singh S, Homayounieh F, Obiezu F, Harmon S, Turkbey E, Merino M, Jones EC, Ball MW, Linehan WM, Turkbey B, and Malayeri AA
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- Humans, Algorithms, Magnetic Resonance Imaging, Random Allocation, Carcinoma, Renal Cell diagnostic imaging, Deep Learning, Kidney Neoplasms diagnostic imaging
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Introduction: Accurate diagnosis and treatment of kidney tumors greatly benefit from automated solutions for detection and classification on MRI. In this study, we explore the application of a deep learning algorithm, YOLOv7, for detecting kidney tumors on contrast-enhanced MRI., Material and Methods: We assessed the performance of YOLOv7 tumor detection on excretory phase MRIs in a large institutional cohort of patients with RCC. Tumors were segmented on MRI using ITK-SNAP and converted to bounding boxes. The cohort was randomly divided into ten benchmarks for training and testing the YOLOv7 algorithm. The model was evaluated using both 2-dimensional and a novel in-house developed 2.5-dimensional approach. Performance measures included F1, Positive Predictive Value (PPV), Sensitivity, F1 curve, PPV-Sensitivity curve, Intersection over Union (IoU), and mean average PPV (mAP)., Results: A total of 326 patients with 1034 tumors with 7 different pathologies were analyzed across ten benchmarks. The average 2D evaluation results were as follows: Positive Predictive Value (PPV) of 0.69 ± 0.05, sensitivity of 0.39 ± 0.02, and F1 score of 0.43 ± 0.03. For the 2.5D evaluation, the average results included a PPV of 0.72 ± 0.06, sensitivity of 0.61 ± 0.06, and F1 score of 0.66 ± 0.04. The best model performance demonstrated a 2.5D PPV of 0.75, sensitivity of 0.69, and F1 score of 0.72., Conclusion: Using computer vision for tumor identification is a cutting-edge and rapidly expanding subject. In this work, we showed that YOLOv7 can be utilized in the detection of kidney cancers., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
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- 2024
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7. Using YOLO v7 to Detect Kidney in Magnetic Resonance Imaging.
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Anari PY, Obiezu F, Lay N, Firouzabadi FD, Chaurasia A, Golagha M, Singh S, Homayounieh F, Zahergivar A, Harmon S, Turkbey E, Gautam R, Ma K, Merino M, Jones EC, Ball MW, Marston Linehan W, Turkbey B, and Malayeri AA
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Introduction: This study explores the use of the latest You Only Look Once (YOLO V7) object detection method to enhance kidney detection in medical imaging by training and testing a modified YOLO V7 on medical image formats., Methods: Study includes 878 patients with various subtypes of renal cell carcinoma (RCC) and 206 patients with normal kidneys. A total of 5657 MRI scans for 1084 patients were retrieved. 326 patients with 1034 tumors recruited from a retrospective maintained database, and bounding boxes were drawn around their tumors. A primary model was trained on 80% of annotated cases, with 20% saved for testing (primary test set). The best primary model was then used to identify tumors in the remaining 861 patients and bounding box coordinates were generated on their scans using the model. Ten benchmark training sets were created with generated coordinates on not-segmented patients. The final model used to predict the kidney in the primary test set. We reported the positive predictive value (PPV), sensitivity, and mean average precision (mAP)., Results: The primary training set showed an average PPV of 0.94 ± 0.01, sensitivity of 0.87 ± 0.04, and mAP of 0.91 ± 0.02. The best primary model yielded a PPV of 0.97, sensitivity of 0.92, and mAP of 0.95. The final model demonstrated an average PPV of 0.95 ± 0.03, sensitivity of 0.98 ± 0.004, and mAP of 0.95 ± 0.01., Conclusion: Using a semi-supervised approach with a medical image library, we developed a high-performing model for kidney detection. Further external validation is required to assess the model's generalizability.
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- 2024
8. Preoperative Renal Parenchyma Volume as a Predictor of Kidney Function Following Nephrectomy of Complex Renal Masses.
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Antony MB, Anari PY, Gopal N, Chaurasia A, Firouzabadi FD, Homayounieh F, Kozel Z, Gautam R, Gurram S, Linehan WM, Turkbey EB, Malayeri AA, and Ball MW
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Background: The von Hippel-Lindau disease (VHL) is a hereditary cancer syndrome with multifocal, bilateral cysts and solid tumors of the kidney. Surgical management may include multiple extirpative surgeries, which ultimately results in parenchymal volume loss and subsequent renal function decline. Recent studies have utilized parenchyma volume as an estimate of renal function prior to surgery for renal cell carcinoma; however, it is not yet validated for surgically altered kidneys with multifocal masses and complex cysts such as are present in VHL., Objective: We sought to validate a magnetic resonance imaging (MRI)-based volumetric analysis with mercaptoacetyltriglycine (MAG-3) renogram and postoperative renal function., Design Setting and Participants: We identified patients undergoing renal surgery at the National Cancer Institute from 2015 to 2020 with preoperative MRI. Renal tumors, cysts, and parenchyma of the operated kidney were segmented manually using ITK-SNAP software., Outcome Measurements and Statistical Analysis: Serum creatinine and urinalysis were assessed preoperatively, and at 3- and 12-mo follow-up time points. Estimated glomerular filtration rate (eGFR) was calculated using serum creatinine-based CKD-EPI 2021 equation. A statistical analysis was conducted on R Studio version 4.1.1., Results and Limitations: Preoperative MRI scans of 113 VHL patients (56% male, median age 48 yr) were evaluated between 2015 and 2021. Twelve (10.6%) patients had a solitary kidney at the time of surgery; 59 (52%) patients had at least one previous partial nephrectomy on the renal unit. Patients had a median of three (interquartile range [IQR]: 2-5) tumors and five (IQR: 0-13) cysts per kidney on imaging. The median preoperative GFR was 70 ml/min/1.73 m
2 (IQR: 58-89). Preoperative split renal function derived from MAG-3 studies and MRI split renal volume were significantly correlated ( r = 0.848, p < 0.001). On the multivariable analysis, total preoperative parenchymal volume, solitary kidney, and preoperative eGFR were significant independent predictors of 12-mo eGFR. When only considering patients with two kidneys undergoing partial nephrectomy, preoperative parenchymal volume and eGFR remained significant predictors of 12-mo eGFR., Conclusions: A parenchyma volume analysis on preoperative MRI correlates well with renogram split function and can predict long-term renal function with added benefit of anatomic detail and ease of application., Patient Summary: Prior to kidney surgery, it is important to understand the contribution of each kidney to overall kidney function. Nuclear medicine scans are currently used to measure split kidney function. We demonstrated that kidney volumes on preoperative magnetic resonance imaging can also be used to estimate split kidney function before surgery, while also providing essential details of tumor and kidney anatomy., (© 2023 Published by Elsevier B.V. on behalf of European Association of Urology.)- Published
- 2023
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9. Deep-Learning-Based Whole-Lung and Lung-Lesion Quantification Despite Inconsistent Ground Truth: Application to Computerized Tomography in SARS-CoV-2 Nonhuman Primate Models.
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Reza SMS, Chu WT, Homayounieh F, Blain M, Firouzabadi FD, Anari PY, Lee JH, Worwa G, Finch CL, Kuhn JH, Malayeri A, Crozier I, Wood BJ, Feuerstein IM, and Solomon J
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- Animals, Lung diagnostic imaging, Primates, SARS-CoV-2, Tomography, X-Ray Computed methods, COVID-19 diagnostic imaging, Deep Learning
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Rationale and Objectives: Animal modeling of infectious diseases such as coronavirus disease 2019 (COVID-19) is important for exploration of natural history, understanding of pathogenesis, and evaluation of countermeasures. Preclinical studies enable rigorous control of experimental conditions as well as pre-exposure baseline and longitudinal measurements, including medical imaging, that are often unavailable in the clinical research setting. Computerized tomography (CT) imaging provides important diagnostic, prognostic, and disease characterization to clinicians and clinical researchers. In that context, automated deep-learning systems for the analysis of CT imaging have been broadly proposed, but their practical utility has been limited. Manual outlining of the ground truth (i.e., lung-lesions) requires accurate distinctions between abnormal and normal tissues that often have vague boundaries and is subject to reader heterogeneity in interpretation. Indeed, this subjectivity is demonstrated as wide inconsistency in manual outlines among experts and from the same expert. The application of deep-learning data-science tools has been less well-evaluated in the preclinical setting, including in nonhuman primate (NHP) models of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection/COVID-19, in which the translation of human-derived deep-learning tools is challenging. The automated segmentation of the whole lung and lung lesions provides a potentially standardized and automated method to detect and quantify disease., Materials and Methods: We used deep-learning-based quantification of the whole lung and lung lesions on CT scans of NHPs exposed to SARS-CoV-2. We proposed a novel multi-model ensemble technique to address the inconsistency in the ground truths for deep-learning-based automated segmentation of the whole lung and lung lesions. Multiple models were obtained by training the convolutional neural network (CNN) on different subsets of the training data instead of having a single model using the entire training dataset. Moreover, we employed a feature pyramid network (FPN), a CNN that provides predictions at different resolution levels, enabling the network to predict objects with wide size variations., Results: We achieved an average of 99.4 and 60.2% Dice coefficients for whole-lung and lung-lesion segmentation, respectively. The proposed multi-model FPN outperformed well-accepted methods U-Net (50.5%), V-Net (54.5%), and Inception (53.4%) for the challenging lesion-segmentation task. We show the application of segmentation outputs for longitudinal quantification of lung disease in SARS-CoV-2-exposed and mock-exposed NHPs., Conclusion: Deep-learning methods should be optimally characterized for and targeted specifically to preclinical research needs in terms of impact, automation, and dynamic quantification independently from purely clinical applications., Competing Interests: Declaration of Competing Interest None., (Published by Elsevier Inc.)
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- 2023
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10. CT radiomics for differentiating fat poor angiomyolipoma from clear cell renal cell carcinoma: Systematic review and meta-analysis.
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Dehghani Firouzabadi F, Gopal N, Hasani A, Homayounieh F, Li X, Jones EC, Yazdian Anari P, Turkbey E, and Malayeri AA
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- Humans, Retrospective Studies, Diagnosis, Differential, Tomography, X-Ray Computed methods, Sensitivity and Specificity, Carcinoma, Renal Cell pathology, Angiomyolipoma diagnostic imaging, Angiomyolipoma pathology, Kidney Neoplasms diagnostic imaging, Kidney Neoplasms pathology, Leukemia, Myeloid, Acute diagnosis
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Purpose: Differentiation of fat-poor angiomyolipoma (fp-AMLs) from renal cell carcinoma (RCC) is often not possible from just visual interpretation of conventional cross-sectional imaging, typically requiring biopsy or surgery for diagnostic confirmation. However, radiomics has the potential to characterize renal masses without the need for invasive procedures. Here, we conducted a systematic review on the accuracy of CT radiomics in distinguishing fp-AMLs from RCCs., Methods: We conducted a search using PubMed/MEDLINE, Google Scholar, Cochrane Library, Embase, and Web of Science for studies published from January 2011-2022 that utilized CT radiomics to discriminate between fp-AMLs and RCCs. A random-effects model was applied for the meta-analysis according to the heterogeneity level. Furthermore, subgroup analyses (group 1: RCCs vs. fp-AML, and group 2: ccRCC vs. fp-AML), and quality assessment were also conducted to explore the possible effect of interstudy differences. To evaluate CT radiomics performance, the pooled sensitivity, specificity, and diagnostic odds ratio (DOR) were assessed. This study is registered with PROSPERO (CRD42022311034)., Results: Our literature search identified 10 studies with 1456 lesions in 1437 patients. Pooled sensitivity was 0.779 [95% CI: 0.562-0.907] and 0.817 [95% CI: 0.663-0.910] for groups 1 and 2, respectively. Pooled specificity was 0.933 [95% CI: 0.814-0.978]and 0.926 [95% CI: 0.854-0.964] for groups 1 and 2, respectively. Also, our findings showed higher sensitivity and specificity of 0.858 [95% CI: 0.742-0.927] and 0.886 [95% CI: 0.819-0.930] for detecting ccRCC from fp-AML in the unenhanced phase of CT scan as compared to the corticomedullary and nephrogenic phases of CT scan., Conclusion: This study suggested that radiomic features derived from CT has high sensitivity and specificity in differentiating RCCs vs. fp-AML, particularly in detecting ccRCCs vs. fp-AML. Also, an unenhanced CT scan showed the highest specificity and sensitivity as compared to contrast CT scan phases. Differentiating between fp-AML and RCC often is not possible without biopsy or surgery; radiomics has the potential to obviate these invasive procedures due to its high diagnostic accuracy., Competing Interests: The authors have declared that no competing interests exist., (Copyright: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.)
- Published
- 2023
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11. Complications after Nephron-sparing Interventions for Renal Tumors: Imaging Findings and Management.
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Chaurasia A, Singh S, Homayounieh F, Gopal N, Jones EC, Linehan WM, Shyn PB, Ball MW, and Malayeri AA
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- Humans, Neoplasm Recurrence, Local, Nephrons diagnostic imaging, Kidney, Kidney Neoplasms diagnostic imaging, Kidney Neoplasms surgery, Carcinoma, Renal Cell diagnostic imaging, Carcinoma, Renal Cell surgery
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The two primary nephron-sparing interventions for treating renal masses such as renal cell carcinoma are surgical partial nephrectomy (PN) and image-guided percutaneous thermal ablation. Nephron-sparing surgery, such as PN, has been the standard of care for treating many localized renal masses. Although uncommon, complications resulting from PN can range from asymptomatic and mild to symptomatic and life-threatening. These complications include vascular injuries such as hematoma, pseudoaneurysm, arteriovenous fistula, and/or renal ischemia; injury to the collecting system causing urinary leak; infection; and tumor recurrence. The incidence of complications after any nephron-sparing surgery depends on many factors, such as the proximity of the tumor to blood vessels or the collecting system, the skill or experience of the surgeon, and patient-specific factors. More recently, image-guided percutaneous renal ablation has emerged as a safe and effective treatment option for small renal tumors, with comparable oncologic outcomes to those of PN and a low incidence of major complications. Radiologists must be familiar with the imaging findings encountered after these surgical and image-guided procedures, especially those indicative of complications. The authors review cross-sectional imaging characteristics of complications after PN and image-guided thermal ablation of kidney tumors and highlight the respective management strategies, ranging from clinical observation to interventions such as angioembolization or repeat surgery. Work of the U.S. Government published under an exclusive license with the RSNA. Online supplemental material and the slide presentation from the RSNA Annual Meeting are available for this article. Quiz questions for this article are available in the Online Learning Center. See the invited commentary by Chung and Raman in this issue.
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- 2023
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12. CT radiomics for differentiating oncocytoma from renal cell carcinomas: Systematic review and meta-analysis.
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Dehghani Firouzabadi F, Gopal N, Homayounieh F, Anari PY, Li X, Ball MW, Jones EC, Samimi S, Turkbey E, and Malayeri AA
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- Humans, Tomography, X-Ray Computed, Sensitivity and Specificity, Diagnosis, Differential, Carcinoma, Renal Cell diagnosis, Adenoma, Oxyphilic diagnostic imaging, Adenoma, Oxyphilic pathology, Kidney Neoplasms diagnosis
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Background: Radiomics is a type of quantitative analysis that provides a more objective approach to detecting tumor subtypes using medical imaging. The goal of this paper is to conduct a comprehensive assessment of the literature on computed tomography (CT) radiomics for distinguishing renal cell carcinomas (RCCs) from oncocytoma., Methods: From February 15th 2012 to 2022, we conducted a broad search of the current literature using the PubMed/MEDLINE, Google scholar, Cochrane Library, Embase, and Web of Science. A meta-analysis of radiomics studies concentrating on discriminating between oncocytoma and RCCs was performed, and the risk of bias was assessed using the Quality Assessment of Diagnostic Accuracy Studies method. The pooled sensitivity, specificity, and diagnostic odds ratio were evaluated via a random-effects model, which was applied for the meta-analysis. This study is registered with PROSPERO (CRD42022311575)., Results: After screening the search results, we identified 6 studies that utilized radiomics to distinguish oncocytoma from other renal tumors; there were a total of 1064 lesions in 1049 patients (288 oncocytoma lesions vs 776 RCCs lesions). The meta-analysis found substantial heterogeneity among the included studies, with pooled sensitivity and specificity of 0.818 [0.619-0.926] and 0.808 [0.537-0.938], for detecting different subtypes of RCCs (clear cell RCC, chromophobe RCC, and papillary RCC) from oncocytoma. Also, a pooled sensitivity and specificity of 0.83 [0.498-0.960] and 0.92 [0.825-0.965], respectively, was found in detecting oncocytoma from chromophobe RCC specifically., Conclusions: According to this study, CT radiomics has a high degree of accuracy in distinguishing RCCs from RO, including chromophobe RCCs from RO. Radiomics algorithms have the potential to improve diagnosis in scenarios that have traditionally been ambiguous. However, in order for this modality to be implemented in the clinical setting, standardization of image acquisition and segmentation protocols as well as inter-institutional sharing of software is warranted., Competing Interests: Declaration of competing interest The authors declare that they have no competing interests., (Published by Elsevier Inc.)
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- 2023
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13. Predictive values of AI-based triage model in suboptimal CT pulmonary angiography.
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Ebrahimian S, Digumarthy SR, Homayounieh F, Bizzo BC, Dreyer KJ, and Kalra MK
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- Angiography, Artificial Intelligence, Computed Tomography Angiography, Contrast Media, Humans, Retrospective Studies, Pulmonary Embolism diagnostic imaging, Triage
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Purpose: We evaluated and compared performance of an acute pulmonary embolism (PE) triaging artificial intelligence (PE-AI) model in suboptimal and optimal CT pulmonary angiography (CTPA)., Methods: In an IRB approved, retrospective study we identified 104 consecutive, suboptimal CTPA which were deemed as suboptimal for PE evaluation in radiology reports due to motion, artifacts and/or inadequate contrast enhancement. We enriched this dataset, with additional 226 optimal CTPA (over same timeframe as suboptimal CTPA) with and without PE. Two thoracic radiologists (ground truth) independently reviewed all 330 CTPA for adequacy (to assess PE down to distal segmental level), reason for suboptimal CTPA (artifacts or poor contrast enhancement), as well as for presence and location of PE. CT values (HU) were measured in the main pulmonary artery. Same attributes were assessed in 80 patients who had repeat or follow-up CTPA following suboptimal CTPA. All CTPA were processed with the PE-AI (Aidoc)., Results: Among 104 suboptimal CTPA (mean age ± standard deviation 56 ± 15 years), 18/104 (17%) were misclassified as suboptimal for PE evaluation in their radiology reports but relabeled as optimal on ground truth evaluation. Of 226 optimal CTPA, 47 (21%) were reclassified as suboptimal CTPA. PEs were present in 97/330 CTPA. PE-AI had similar performance on suboptimal CTPA (sensitivity 100%; specificity 89%; AUC 0.89, 95% CI 0.80-0.98) and optimal CTPA (sensitivity 96%; specificity 92%; AUC 0.87, 95% CI 0.81-0.93)., Conclusion: Suboptimal CTPA examinations do not impair the performance of PE-AI triage model; AI retains clinically meaningful sensitivity and high specificity regardless of diagnostic quality., (Copyright © 2022 Elsevier Inc. All rights reserved.)
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- 2022
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14. Characterization of Benign and Malignant Pancreatic Lesions with DECT Quantitative Metrics and Radiomics.
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Ebrahimian S, Singh R, Netaji A, Madhusudhan KS, Homayounieh F, Primak A, Lades F, Saini S, Kalra MK, and Sharma S
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- Adult, Aged, Aged, 80 and over, Humans, Magnetic Resonance Imaging, Middle Aged, Retrospective Studies, Tomography, X-Ray Computed methods, Benchmarking, Pancreatic Neoplasms diagnostic imaging
- Abstract
Rationale and Objectives: To compare dual energy CT (DECT) quantitative metrics and radiomics for differentiating benign and malignant pancreatic lesions on contrast enhanced abdomen CT., Materials and Methods: Our study included 103 patients who underwent contrast-enhanced DECT for assessing focal pancreatic lesions at one of the two hospitals (Site A: age 68 ± 12 yrs; malignant = 41, benign = 18; Site B: age 46 ± 2 yrs; malignant = 23, benign = 21). All malignant lesions had histologic confirmation, and benign lesions were stable on follow up CT (>12 months) or had characteristic benign features on MRI. Arterial-phase, low- and high-kV DICOM images were processed with the DECT Tumor Analysis (DETA) to obtain DECT quantitative metrics such as HU, iodine and water content from a region of interest (ROI) over focal pancreatic lesions. Separately, we obtained DECT radiomics from the same ROI. Data were analyzed with multiple logistic regression and receiver operating characteristics to generate area under the curve (AUC) for best predictive variables., Results: DECT quantitative metrics and radiomics had AUCs of 0.98-0.99 at site A and 0.89-0.94 at site B data for classifying benign and malignant pancreatic lesions. There was no significant difference in the AUCs and accuracies of DECT quantitative metrics and radiomics from lesion rims and volumes among patients at both sites (p > 0.05). Supervised learning-based model with data from the two sites demonstrated best AUCs of 0.94 (DECT radiomics) and 0.90 (DECT quantitative metrics) for characterizing pancreatic lesions as benign or malignant., Conclusion: Compared to complex DECT radiomics, quantitative DECT information provide a simpler but accurate method of differentiating benign and malignant pancreatic lesions., (Copyright © 2021 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.)
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- 2022
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15. Spectral segmentation and radiomic features predict carotid stenosis and ipsilateral ischemic burden from DECT angiography.
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Ebrahimian S, Homayounieh F, Singh R, Primak A, Kalra MK, and Romero JM
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- Aged, Aged, 80 and over, Angiography, Carotid Artery, Internal, Constriction, Pathologic, Female, Humans, Male, Middle Aged, ROC Curve, Carotid Stenosis diagnostic imaging, Carotid Stenosis surgery
- Abstract
PURPOSE The purpose of this study is to compare spectral segmentation, spectral radiomic, and single- energy radiomic features in the assessment of internal and common carotid artery (ICA/CCA) stenosis and prediction of surgical outcome. METHODS Our ethical committee-approved, Health Insurance Portability and Accountability Act (HIPAA)- compliant study included 85 patients (mean age, 73 ± 10 years; male : female, 56 : 29) who under- went contrast-enhanced, dual-source dual-energy CT angiography (DECTA) (Siemens Definition Flash) of the neck for assessing ICA/CCA stenosis. Patients with a prior surgical or interventional treatment of carotid stenosis were excluded. Two radiologists graded the severity of carotid ste- nosis on DECTA images as mild (<50% luminal narrowing), moderate (50%-69%), and severe (>70%) stenosis. Thin-section, low- and high-kV DICOM images from the arterial phase acquisi- tion were processed with a dual-energy CT prototype (DTA, eXamine, Siemens Healthineers) to generate spectral segmentation and radiomic features over regions of interest along the entire length (volume) and separately at a single-section with maximum stenosis. Multiple logistic regressions and area under the receiver operating characteristic curve (AUC) were used for data analysis. RESULTS Among 85 patients, 22 ICA/CCAs had normal luminal dimensions and 148 ICA/CCAs had luminal stenosis (mild stenosis: 51, moderate: 38, severe: 59). For differentiating non-severe and severe ICA/CCA stenosis, radiomic features (volume: AUC=0.94, 95% CI 0.88-0.96; section: AUC=0.92, 95% CI 0.86-0.93) were significantly better than spectral segmentation features (volume: AUC = 0.86, 95% CI 0.74-0.87; section: AUC = 0.68, 95% CI 0.66-0.78) (P < .001). Spectral radiomic features predicted revascularization procedure (AUC = 0.77) and the presence of ipsilateral intra- cranial ischemic changes (AUC = 0.76). CONCLUSION Spectral segmentation and radiomic features from DECTA can differentiate patients with differ- ent luminal ICA/CCA stenosis grades.
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- 2022
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16. CHEST CT USAGE IN COVID-19 PNEUMONIA: MULTICENTER STUDY ON RADIATION DOSES AND DIAGNOSTIC QUALITY IN BRAZIL.
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Bernardo M, Homayounieh F, Cuter MCR, Bellegard LM, Oliveira Junior HM, Buril GO, de Melo Tapajós JS, Sales DM, de Moura Carvalho LC, Alves Pinto D, Varella R, Tapajós LL, Ebrahimian S, Vassileva J, Kalra MK, and Khoury HJ
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- Brazil, Humans, Radiation Dosage, SARS-CoV-2, Tomography, X-Ray Computed, COVID-19
- Abstract
We assessed variations in chest CT usage, radiation dose and image quality in COVID-19 pneumonia. Our study included all chest CT exams performed in 533 patients from 6 healthcare sites from Brazil. We recorded patients' age, gender and body weight and the information number of CT exams per patient, scan parameters and radiation doses (volume CT dose index-CTDIvol and dose length product-DLP). Six radiologists assessed all chest CT exams for the type of pulmonary findings and classified CT appearance of COVID-19 pneumonia as typical, indeterminate, atypical or negative. In addition, each CT was assessed for diagnostic quality (optimal or suboptimal) and presence of artefacts. Artefacts were frequent (367/841), often related to respiratory motion (344/367 chest CT exams with artefacts) and resulted in suboptimal evaluation in mid-to-lower lungs (176/344) or the entire lung (31/344). There were substantial differences in CT usage, patient weight, CTDIvol and DLP across the participating sites., (© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
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- 2021
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17. An Artificial Intelligence-Based Chest X-ray Model on Human Nodule Detection Accuracy From a Multicenter Study.
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Homayounieh F, Digumarthy S, Ebrahimian S, Rueckel J, Hoppe BF, Sabel BO, Conjeti S, Ridder K, Sistermanns M, Wang L, Preuhs A, Ghesu F, Mansoor A, Moghbel M, Botwin A, Singh R, Cartmell S, Patti J, Huemmer C, Fieselmann A, Joerger C, Mirshahzadeh N, Muse V, and Kalra M
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- Adult, Artificial Intelligence, Female, Germany, Humans, Male, Middle Aged, Multiple Pulmonary Nodules diagnostic imaging, Radiographic Image Interpretation, Computer-Assisted, Radiography, Thoracic, Sensitivity and Specificity, Solitary Pulmonary Nodule diagnostic imaging, Algorithms, Lung Neoplasms diagnostic imaging
- Abstract
Importance: Most early lung cancers present as pulmonary nodules on imaging, but these can be easily missed on chest radiographs., Objective: To assess if a novel artificial intelligence (AI) algorithm can help detect pulmonary nodules on radiographs at different levels of detection difficulty., Design, Setting, and Participants: This diagnostic study included 100 posteroanterior chest radiograph images taken between 2000 and 2010 of adult patients from an ambulatory health care center in Germany and a lung image database in the US. Included images were selected to represent nodules with different levels of detection difficulties (from easy to difficult), and comprised both normal and nonnormal control., Exposures: All images were processed with a novel AI algorithm, the AI Rad Companion Chest X-ray. Two thoracic radiologists established the ground truth and 9 test radiologists from Germany and the US independently reviewed all images in 2 sessions (unaided and AI-aided mode) with at least a 1-month washout period., Main Outcomes and Measures: Each test radiologist recorded the presence of 5 findings (pulmonary nodules, atelectasis, consolidation, pneumothorax, and pleural effusion) and their level of confidence for detecting the individual finding on a scale of 1 to 10 (1 representing lowest confidence; 10, highest confidence). The analyzed metrics for nodules included sensitivity, specificity, accuracy, and receiver operating characteristics curve area under the curve (AUC)., Results: Images from 100 patients were included, with a mean (SD) age of 55 (20) years and including 64 men and 36 women. Mean detection accuracy across the 9 radiologists improved by 6.4% (95% CI, 2.3% to 10.6%) with AI-aided interpretation compared with unaided interpretation. Partial AUCs within the effective interval range of 0 to 0.2 false positive rate improved by 5.6% (95% CI, -1.4% to 12.0%) with AI-aided interpretation. Junior radiologists saw greater improvement in sensitivity for nodule detection with AI-aided interpretation as compared with their senior counterparts (12%; 95% CI, 4% to 19% vs 9%; 95% CI, 1% to 17%) while senior radiologists experienced similar improvement in specificity (4%; 95% CI, -2% to 9%) as compared with junior radiologists (4%; 95% CI, -3% to 5%)., Conclusions and Relevance: In this diagnostic study, an AI algorithm was associated with improved detection of pulmonary nodules on chest radiographs compared with unaided interpretation for different levels of detection difficulty and for readers with different experience.
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- 2021
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18. PRACTICAL CHALLENGES WITH IMAGING COVID-19 IN BRAZIL: MITIGATION IN AND BEYOND THE PANDEMIC.
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Bernardo MO, Homayounieh F, Ebrahimian S, de Melo Tapajós JS, de Moura Carvalho LC, Varella R, Khoury HJ, and Kalra MK
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- Brazil epidemiology, Humans, Prospective Studies, Radiation Dosage, Retrospective Studies, SARS-CoV-2, COVID-19, Pandemics
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Computed tomography (CT) provides useful information in patients with known or suspected COVID-19 infection. However, there are substantial variations and challenges in scanner technologies and scan practices that have negative effect on the image quality and can increase radiation dose associated with CT., Objective: In this article, we present major issues and challenges with use of CT at five Brazilian CT facilities for imaging patients with known or suspected COVID-19 infection and offer specific mitigating strategies., Methods: Observational, retrospective and prospective study of five CT facilities from different states and regions of Brazil, with approval of research and ethics committees., Results: The most important issues include frequent use of CT, lack of up-to-date and efficient scanner technologies, over-scanning and patient off-centring. Mitigating strategies can include updating scanner technology and improving scan practices., (© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
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- 2021
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19. Comparison of Baseline, Bone-Subtracted, and Enhanced Chest Radiographs for Detection of Pneumothorax.
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Homayounieh F, Digumarthy SR, Febbo JA, Garrana S, Nitiwarangkul C, Singh R, Khera RD, Gilman M, and Kalra MK
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- Adult, Aged, Area Under Curve, Bone and Bones diagnostic imaging, False Negative Reactions, False Positive Reactions, Female, Humans, Image Processing, Computer-Assisted, Male, Middle Aged, ROC Curve, Retrospective Studies, Tomography, X-Ray Computed, Pneumothorax diagnostic imaging, Radiography, Thoracic methods
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Purpose: To assess and compare detectability of pneumothorax on unprocessed baseline, single-energy, bone-subtracted, and enhanced frontal chest radiographs (chest X-ray, CXR)., Method and Materials: Our retrospective institutional review board-approved study included 202 patients (mean age 53 ± 24 years; 132 men, 70 women) who underwent frontal CXR and had trace, moderate, large, or tension pneumothorax. All patients (except those with tension pneumothorax) had concurrent chest computed tomography (CT). Two radiologists reviewed the CXR and chest CT for pneumothorax on baseline CXR (ground truth). All baseline CXR were processed to generate bone-subtracted and enhanced images (ClearRead X-ray). Four radiologists (R1-R4) assessed the baseline, bone-subtracted, and enhanced images and recorded the presence of pneumothorax (side, size, and confidence for detection) for each image type. Area under the curve (AUC) was calculated with receiver operating characteristic analyses to determine the accuracy of pneumothorax detection., Results: Bone-subtracted images (AUC: 0.89-0.97) had the lowest accuracy for detection of pneumothorax compared to the baseline (AUC: 0.94-0.97) and enhanced (AUC: 0.96-0.99) radiographs ( P < .01). Most false-positive and false-negative pneumothoraces were detected on the bone-subtracted images and the least numbers on the enhanced radiographs. Highest detection rates and confidence were noted for the enhanced images (empiric AUC for R1-R4 0.96-0.99)., Conclusion: Enhanced CXRs are superior to bone-subtracted and unprocessed radiographs for detection of pneumothorax., Clinical Relevance/application: Enhanced CXRs improve detection of pneumothorax over unprocessed images; bone-subtracted images must be cautiously reviewed to avoid false negatives.
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- 2021
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20. Multiplatform, Non-Breath-Hold Fast Scanning Protocols: Should We Stop Giving Breath-Hold Instructions for Routine Chest CT? [Formula: see text].
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Doda Khera R, Nitiwarangkul C, Singh R, Homayounieh F, Digumarthy SR, and Kalra MK
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- Aged, Aged, 80 and over, Breath Holding, Female, Humans, Male, Middle Aged, Respiratory Mechanics, Artifacts, Movement, Multidetector Computed Tomography methods, Radiography, Thoracic methods
- Abstract
Objective: We assessed if non-breath-hold (NBH) fast scanning protocol can provide respiratory motion-free images for interpretation of chest computed tomography (CT)., Materials and Methods: In our 2-phase project, we first collected baseline data on frequency of respiratory motion artifacts on breath-hold chest CT in 826 adult patients. The second phase included 62 patients (mean age 66 ± 15 years; 21 females, 41 males) who underwent an NBH chest CT on either single-source (n = 32) or dual-source (n = 30) multidetector-row CT scanners. Clinical indications for chest CT, reason for using NBH CT, scanner type, scan duration, and radiation dose (CT dose index volume, dose length product) were recorded. Two thoracic radiologists (R1 and R2) independently graded respiratory motion artifacts (1 = no respiratory motion artifacts with unrestricted evaluation; 2 = minor motion artifacts limited to one lung lobe or less with good diagnostic quality; 3 = moderate motion artifacts limited to 2 to 3 lung lobes but adequate for clinical diagnosis; 4 = poor evaluability or unevaluable from severe motion artifacts; and 5 = limited quality due to other causes like high noise, beam hardening, or metallic artifacts), and recorded pulmonary and mediastinal findings. Descriptive analyses, Cohen κ test for interobserver agreement, and Student t test were performed for statistical analysis., Results: No NBH chest CT were deemed uninterpretable by either radiologist; most NBH CT (R1-59 of 62, 95%; R2-62 of 62, 100%) had no or minimal motion artifacts. Only 3 of 62 (R1) NBH chest CT had motion artifacts limiting diagnostic evaluation for lungs but not in the mediastinum., Conclusion: Non-breath-hold fast protocol enables acquisition of diagnostic quality chest CT free of respiratory motion artifacts in patients who cannot hold their breath.
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- 2021
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21. Prediction of Coronary Calcification and Stenosis: Role of Radiomics From Low-Dose CT.
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Homayounieh F, Yan P, Digumarthy SR, Kruger U, Wang G, and Kalra MK
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- Aged, Constriction, Pathologic, Coronary Angiography, Coronary Vessels, Early Detection of Cancer, Female, Humans, Male, Middle Aged, Retrospective Studies, Tomography, X-Ray Computed, Coronary Artery Disease diagnostic imaging, Coronary Artery Disease epidemiology, Coronary Stenosis diagnostic imaging, Coronary Stenosis epidemiology, Lung Neoplasms, Vascular Calcification diagnostic imaging, Vascular Calcification epidemiology
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Rationale and Objectives: We aimed to assess relationship between single-click, whole heart radiomics from low-dose computed tomography (LDCT) for lung cancer screening with coronary artery calcification and stenosis., Materials and Methods: The institutional review board-approved, retrospective study included all 106 patients (68 men, 38 women, mean age 64 ± 7 years) who underwent both LDCT for lung cancer screening and had calcium scoring and coronary computed tomography angiography in our institution. We recorded the clinical variables including patients' demographics, smoking history, family history, and lipid profiles. Coronary calcium scores and grading of coronary stenosis were recorded from the radiology information system. We calculated the multiethnic scores for atherosclerosis risk scores to obtain 10-year coronary heart disease (MESA 10-Y CHD) risk of cardiovascular disease for all patients. Deidentified LDCT exams were exported to a Radiomics prototype for automatic heart segmentation, and derivation of radiomics. Data were analyzed using multiple logistic regression and kernel Fisher discriminant analyses., Results: Whole heart radiomics were better than the clinical variables for differentiating subjects with different Agatston scores (≤400 and >400) (area under the curve [AUC] 0.92 vs 0.69). Prediction of coronary stenosis and MESA 10-Y CHD risk was better on whole heart radiomics (AUC:0.86-0.87) than with clinical variables (AUC:0.69-0.79). Addition of clinical variables or visual assessment of coronary calcification from LDCT to whole heart radiomics resulted in a modest change in the AUC., Conclusion: Single-click, whole heart radiomics obtained from LDCT for lung cancer screening can differentiate patients with different Agatston and MESA risk scores for cardiovascular diseases., (Copyright © 2020 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.)
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- 2021
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22. A multi-center study of COVID-19 patient prognosis using deep learning-based CT image analysis and electronic health records.
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Gong K, Wu D, Arru CD, Homayounieh F, Neumark N, Guan J, Buch V, Kim K, Bizzo BC, Ren H, Tak WY, Park SY, Lee YR, Kang MK, Park JG, Carriero A, Saba L, Masjedi M, Talari H, Babaei R, Mobin HK, Ebrahimian S, Guo N, Digumarthy SR, Dayan I, Kalra MK, and Li Q
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- Electronic Health Records, Humans, Lung, Prognosis, SARS-CoV-2, Tomography, X-Ray Computed, COVID-19, Deep Learning
- Abstract
Purpose: As of August 30th, there were in total 25.1 million confirmed cases and 845 thousand deaths caused by coronavirus disease of 2019 (COVID-19) worldwide. With overwhelming demands on medical resources, patient stratification based on their risks is essential. In this multi-center study, we built prognosis models to predict severity outcomes, combining patients' electronic health records (EHR), which included vital signs and laboratory data, with deep learning- and CT-based severity prediction., Method: We first developed a CT segmentation network using datasets from multiple institutions worldwide. Two biomarkers were extracted from the CT images: total opacity ratio (TOR) and consolidation ratio (CR). After obtaining TOR and CR, further prognosis analysis was conducted on datasets from INSTITUTE-1, INSTITUTE-2 and INSTITUTE-3. For each data cohort, generalized linear model (GLM) was applied for prognosis prediction., Results: For the deep learning model, the correlation coefficient of the network prediction and manual segmentation was 0.755, 0.919, and 0.824 for the three cohorts, respectively. The AUC (95 % CI) of the final prognosis models was 0.85(0.77,0.92), 0.93(0.87,0.98), and 0.86(0.75,0.94) for INSTITUTE-1, INSTITUTE-2 and INSTITUTE-3 cohorts, respectively. Either TOR or CR exist in all three final prognosis models. Age, white blood cell (WBC), and platelet (PLT) were chosen predictors in two cohorts. Oxygen saturation (SpO2) was a chosen predictor in one cohort., Conclusion: The developed deep learning method can segment lung infection regions. Prognosis results indicated that age, SpO2, CT biomarkers, PLT, and WBC were the most important prognostic predictors of COVID-19 in our prognosis model., (Copyright © 2021. Published by Elsevier B.V.)
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- 2021
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23. Use of radiomics to differentiate left atrial appendage thrombi and mixing artifacts on single-phase CT angiography.
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Ebrahimian S, Digumarthy SR, Homayounieh F, Primak A, Lades F, Hedgire S, and Kalra MK
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- Aged, Artifacts, Computed Tomography Angiography, Echocardiography, Transesophageal, Humans, Predictive Value of Tests, Atrial Appendage diagnostic imaging, Atrial Fibrillation, Thrombosis diagnostic imaging
- Abstract
To assess if radiomics can differentiate left atrial appendage (LAA) contrast-mixing artifacts and thrombi on early-phase CT angiography without the need for late-phase images. Our study included 111 patients who underwent early- and late-phase, contrast-enhanced cardiac CT. Of these, 79 patients had LAA filling defects from thrombus (n = 46, mean age: 72 ± 12 years, M:F 26:20) or contrast-mixing artifact (n = 33, mean age: 71 ± 13 years, M:F 21:12) on early-contrast-enhanced phase. The remaining 32 patients (mean age: 66 ± 10 years, M:F 19:13) had homogeneous LAA opacification without filling defects. The entire LAA volume on early-phase CT images was manually segmented to obtain radiomic features (Frontier, Siemens). A radiologist assessed for the presence of LAA filling defects and recorded the size and mean CT attenuation (HU) of filling defects and normal LAA. The data were analyzed using multiple logistic regression with receiver operating characteristics area under the curve (AUC) as an output. The radiologist correctly identified all 32 patients without LAA filling defects, 42/46 LAA with thrombi, and 23/33 contrast mixing artifacts. Although HU of LAA thrombi and contrast mixing artifacts was significantly different, with the lowest AUC (0.66), it was inferior to both radiologist assessment and radiomics (p = 0.05). Combination of radiologist assessment and radiomics (AUC 0.92) was superior to HU (0.66), radiomics (0.85), and radiologist (0.80) alone (p < 0.008). Radiomics can differentiate between LAA filling defects from thrombi and contrast mixing artifacts on early-phase contrast-enhanced CT images without the need for late-phase CT.
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- 2021
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24. Deep learning predicts cardiovascular disease risks from lung cancer screening low dose computed tomography.
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Chao H, Shan H, Homayounieh F, Singh R, Khera RD, Guo H, Su T, Wang G, Kalra MK, and Yan P
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- Adult, Aged, Aged, 80 and over, Cardiovascular Diseases diagnosis, Cardiovascular Diseases etiology, Clinical Trials as Topic, Coronary Vessels diagnostic imaging, Datasets as Topic, Electrocardiography, Female, Follow-Up Studies, Humans, Lung diagnostic imaging, Lung Neoplasms complications, Male, Mass Screening methods, Middle Aged, ROC Curve, Retrospective Studies, Risk Assessment methods, Risk Assessment statistics & numerical data, Risk Factors, Tomography, X-Ray Computed statistics & numerical data, Cardiovascular Diseases epidemiology, Deep Learning, Image Processing, Computer-Assisted methods, Lung Neoplasms diagnosis, Mass Screening statistics & numerical data
- Abstract
Cancer patients have a higher risk of cardiovascular disease (CVD) mortality than the general population. Low dose computed tomography (LDCT) for lung cancer screening offers an opportunity for simultaneous CVD risk estimation in at-risk patients. Our deep learning CVD risk prediction model, trained with 30,286 LDCTs from the National Lung Cancer Screening Trial, achieves an area under the curve (AUC) of 0.871 on a separate test set of 2,085 subjects and identifies patients with high CVD mortality risks (AUC of 0.768). We validate our model against ECG-gated cardiac CT based markers, including coronary artery calcification (CAC) score, CAD-RADS score, and MESA 10-year risk score from an independent dataset of 335 subjects. Our work shows that, in high-risk patients, deep learning can convert LDCT for lung cancer screening into a dual-screening quantitative tool for CVD risk estimation.
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- 2021
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25. Prediction of burden and management of renal calculi from whole kidney radiomics: a multicenter study.
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Homayounieh F, Doda Khera R, Bizzo BC, Ebrahimian S, Primak A, Schmidt B, Saini S, and Kalra MK
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- Abdomen, Adult, Aged, Female, Humans, Kidney, Male, Middle Aged, Retrospective Studies, Kidney Calculi diagnostic imaging, Kidney Calculi therapy, Lithotripsy
- Abstract
Purpose: To assess if autosegmentation-assisted radiomics can predict disease burden, hydronephrosis, and treatment strategies in patients with renal calculi., Methods: The local ethical committee-approved, retrospective study included 202 adult patients (mean age: 53 ± 17 years; male: 103; female: 99) who underwent clinically indicated, non-contrast abdomen-pelvis CT for suspected or known renal calculi. All CT examinations were reviewed to determine the presence (n = 123 patients) or absence (n = 79) of renal calculi. On CT images with renal calculi, each kidney stone was annotated and measured (maximum dimension, Hounsfield unit (HU), and combined and dominant stone volumes) using a HU threshold-based segmentation. We recorded the presence of hydronephrosis, number of renal calculi, and treatment strategies. Deidentified CT images were processed with the radiomics prototype (Radiomics, Frontier, Siemens Healthineers), which automatically segmented each kidney to obtain 1690 first-, shape-, and higher-order radiomics. Data were analyzed using multiple logistic regression analysis with areas under the curve (AUC) as output., Results: Among 202 patients, only 28 patients (18%) needed procedural treatment (lithotripsy or ureteroscopic stone extraction). Gray-level co-occurrence matrix (GLCM) and gray-level run length matrix (GLRLM) differentiated patients with and without procedural treatment (AUC 0.91, 95% CI 0.85-0.92). Higher-order radiomics (gray-level size zone matrix - GLSZM) differentiated kidneys with and without hydronephrosis (AUC: 0.99, p < 0.001) as well those with different stone volumes (AUC up to 0.89, 95% CI 0.89-0.92)., Conclusion: Automated segmentation and radiomics of entire kidneys can assess hydronephrosis presence, stone burden, and treatment strategies for renal calculi with AUCs > 0.85.
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- 2021
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26. Artificial intelligence-based vessel suppression for detection of sub-solid nodules in lung cancer screening computed tomography.
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Singh R, Kalra MK, Homayounieh F, Nitiwarangkul C, McDermott S, Little BP, Lennes IT, Shepard JO, and Digumarthy SR
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Background: Lung cancer screening (LCS) with low-dose computed tomography (LDCT) helps early lung cancer detection, commonly presenting as small pulmonary nodules. Artificial intelligence (AI)-based vessel suppression (AI-VS) and automatic detection (AI-AD) algorithm can improve detection of subsolid nodules (SSNs) on LDCT. We assessed the impact of AI-VS and AI-AD in detection and classification of SSNs [ground-glass nodules (GGNs) and part-solid nodules (PSNs)], on LDCT performed for LCS., Methods: Following regulatory approval, 123 LDCT examinations with sub-solid pulmonary nodules (average diameter ≥6 mm) were processed to generate three image series for each examination-unprocessed, AI-VS, and AI-AD series with annotated lung nodules. Two thoracic radiologists in consensus formed the standard of reference (SOR) for this study. Two other thoracic radiologists (R1 and R2; 5 and 10 years of experience in thoracic CT image interpretation) independently assessed the unprocessed images alone, then together with AI-VS series, and finally with AI-AD for detecting all ≥6 mm GGN and PSN. We performed receiver operator characteristics (ROC) and Cohen's Kappa analyses for statistical analyses., Results: On unprocessed images, R1 and R2 detected 232/310 nodules (R1: 114 GGN, 118 PSN) and 255/310 nodules (R2: 122 GGN, 133 PSN), respectively (P>0.05). On AI-VS images, they detected 249/310 nodules (119 GGN, 130 PSN) and 277/310 nodules (128 GGN, 149 PSN), respectively (P≥0.12). When compared to the SOR, accuracy (AUC) for detection of PSN on the AI-VS images (AUC 0.80-0.81) was greater than on the unprocessed images (AUC 0.70-0.76). AI-VS images enabled detection of solid components in five nodules deemed as GGN on the unprocessed images. Accuracy of AI-AD was lower than both the radiologists (AUC 0.60-0.72)., Conclusions: AI-VS improved the detection and classification of SSN into GGN and PSN on LDCT of the chest for the two radiologist (R1 and R2) readers., Competing Interests: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/qims-20-630). MKK received unrelated research grants from Siemens Healthineers, and Riverain technologies LLC. BPL receives royalties as an academic textbook author and associate editor from Reed Elsevier, Inc. SRD provides independent image analysis for hospital contracted clinical research trials programs for Merck, Pfizer, Bristol Mayer Squibb, Novartis, Roche, Polaris, Cascadian, Abbvie, Gradalis, Clinical Bay, Zai laboratories. Received honorarium from Siemens Healthineers for unrelated work and received research funding from Lunit Technology, S. Korea for unrelated work. JAOS reports other from Royalties from Elsevier, outside the submitted work. The other authors have no conflicts of interest to declare., (2021 Quantitative Imaging in Medicine and Surgery. All rights reserved.)
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- 2021
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27. Investigating centering, scan length, and arm position impact on radiation dose across 4 countries from 4 continents during pandemic: Mitigating key radioprotection issues.
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Ebrahimian S, Oliveira Bernardo M, Alberto Moscatelli A, Tapajos J, Leitão Tapajós L, Jamil Khoury H, Babaei R, Karimi Mobin H, Mohseni I, Arru C, Carriero A, Falaschi Z, Pasche A, Saba L, Homayounieh F, Bizzo BC, Vassileva J, and Kalra MK
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- Adult, Arm, Humans, Iran, Italy epidemiology, Pandemics, Radiation Dosage, SARS-CoV-2, COVID-19, Radiation Protection
- Abstract
Purpose: Optimization of CT scan practices can help achieve and maintain optimal radiation protection. The aim was to assess centering, scan length, and positioning of patients undergoing chest CT for suspected or known COVID-19 pneumonia and to investigate their effect on associated radiation doses., Methods: With respective approvals from institutional review boards, we compiled CT imaging and radiation dose data from four hospitals belonging to four countries (Brazil, Iran, Italy, and USA) on 400 adult patients who underwent chest CT for suspected or known COVID-19 pneumonia between April 2020 and August 2020. We recorded patient demographics and volume CT dose index (CTDI
vol ) and dose length product (DLP). From thin-section CT images of each patient, we estimated the scan length and recorded the first and last vertebral bodies at the scan start and end locations. Patient mis-centering and arm position were recorded. Data were analyzed with analysis of variance (ANOVA)., Results: The extent and frequency of patient mis-centering did not differ across the four CT facilities (>0.09). The frequency of patients scanned with arms by their side (11-40% relative to those with arms up) had greater mis-centering and higher CTDIvol and DLP at 2/4 facilities (p = 0.027-0.05). Despite lack of variations in effective diameters (p = 0.14), there were significantly variations in scan lengths, CTDIvol and DLP across the four facilities (p < 0.001)., Conclusions: Mis-centering, over-scanning, and arms by the side are frequent issues with use of chest CT in COVID-19 pneumonia and are associated with higher radiation doses., (Published by Elsevier Ltd.)- Published
- 2021
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28. Multicenter Assessment of CT Pneumonia Analysis Prototype for Predicting Disease Severity and Patient Outcome.
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Homayounieh F, Bezerra Cavalcanti Rockenbach MA, Ebrahimian S, Doda Khera R, Bizzo BC, Buch V, Babaei R, Karimi Mobin H, Mohseni I, Mitschke M, Zimmermann M, Durlak F, Rauch F, Digumarthy SR, and Kalra MK
- Subjects
- Adult, Female, Humans, Lung diagnostic imaging, Male, Prognosis, Retrospective Studies, SARS-CoV-2, Severity of Illness Index, Tomography, X-Ray Computed, COVID-19
- Abstract
To perform a multicenter assessment of the CT Pneumonia Analysis prototype for predicting disease severity and patient outcome in COVID-19 pneumonia both without and with integration of clinical information. Our IRB-approved observational study included consecutive 241 adult patients (> 18 years; 105 females; 136 males) with RT-PCR-positive COVID-19 pneumonia who underwent non-contrast chest CT at one of the two tertiary care hospitals (site A: Massachusetts General Hospital, USA; site B: Firoozgar Hospital Iran). We recorded patient age, gender, comorbid conditions, laboratory values, intensive care unit (ICU) admission, mechanical ventilation, and final outcome (recovery or death). Two thoracic radiologists reviewed all chest CTs to record type, extent of pulmonary opacities based on the percentage of lobe involved, and severity of respiratory motion artifacts. Thin-section CT images were processed with the prototype (Siemens Healthineers) to obtain quantitative features including lung volumes, volume and percentage of all-type and high-attenuation opacities (≥ -200 HU), and mean HU and standard deviation of opacities within a given lung region. These values are estimated for the total combined lung volume, and separately for each lung and each lung lobe. Multivariable analyses of variance (MANOVA) and multiple logistic regression were performed for data analyses. About 26% of chest CTs (62/241) had moderate to severe motion artifacts. There were no significant differences in the AUCs of quantitative features for predicting disease severity with and without motion artifacts (AUC 0.94-0.97) as well as for predicting patient outcome (AUC 0.7-0.77) (p > 0.5). Combination of the volume of all-attenuation opacities and the percentage of high-attenuation opacities (AUC 0.76-0.82, 95% confidence interval (CI) 0.73-0.82) had higher AUC for predicting ICU admission than the subjective severity scores (AUC 0.69-0.77, 95% CI 0.69-0.81). Despite a high frequency of motion artifacts, quantitative features of pulmonary opacities from chest CT can help differentiate patients with favorable and adverse outcomes., (© 2021. Society for Imaging Informatics in Medicine.)
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- 2021
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29. Association of AI quantified COVID-19 chest CT and patient outcome.
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Fang X, Kruger U, Homayounieh F, Chao H, Zhang J, Digumarthy SR, Arru CD, Kalra MK, and Yan P
- Subjects
- Adult, Aged, Aged, 80 and over, Databases, Factual, Female, Hospitalization, Humans, Lung diagnostic imaging, Male, Middle Aged, Neural Networks, Computer, Pandemics, Prognosis, Retrospective Studies, Severity of Illness Index, Tomography, X-Ray Computed methods, Treatment Outcome, Artificial Intelligence, COVID-19 diagnostic imaging, Thorax diagnostic imaging
- Abstract
Purpose: Severity scoring is a key step in managing patients with COVID-19 pneumonia. However, manual quantitative analysis by radiologists is a time-consuming task, while qualitative evaluation may be fast but highly subjective. This study aims to develop artificial intelligence (AI)-based methods to quantify disease severity and predict COVID-19 patient outcome., Methods: We develop an AI-based framework that employs deep neural networks to efficiently segment lung lobes and pulmonary opacities. The volume ratio of pulmonary opacities inside each lung lobe gives the severity scores of the lobes, which are then used to predict ICU admission and mortality with three different machine learning methods. The developed methods were evaluated on datasets from two hospitals (site A: Firoozgar Hospital, Iran, 105 patients; site B: Massachusetts General Hospital, USA, 88 patients)., Results: AI-based severity scores are strongly associated with those evaluated by radiologists (Spearman's rank correlation 0.837, [Formula: see text]). Using AI-based scores produced significantly higher ([Formula: see text]) area under the ROC curve (AUC) values. The developed AI method achieved the best performance of AUC = 0.813 (95% CI [0.729, 0.886]) in predicting ICU admission and AUC = 0.741 (95% CI [0.640, 0.837]) in mortality estimation on the two datasets., Conclusions: Accurate severity scores can be obtained using the developed AI methods over chest CT images. The computed severity scores achieved better performance than radiologists in predicting COVID-19 patient outcome by consistently quantifying image features. Such developed techniques of severity assessment may be extended to other lung diseases beyond the current pandemic.
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- 2021
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30. Reply to "Quality Control of Radiomics Study to Differentiate Benign and Malignant Hepatic Lesions".
- Author
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Homayounieh F and Kalra MK
- Subjects
- Diagnosis, Differential, Humans, Pilot Projects, Quality Control, ROC Curve, Tomography, X-Ray Computed
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- 2021
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31. Variations in CT Utilization, Protocols, and Radiation Doses in COVID-19 Pneumonia: Results from 28 Countries in the IAEA Study.
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Homayounieh F, Holmberg O, Umairi RA, Aly S, Basevičius A, Costa PR, Darweesh A, Gershan V, Ilves P, Kostova-Lefterova D, Renha SK, Mohseni I, Rampado O, Rotaru N, Shirazu I, Sinitsyn V, Turk T, Van Ngoc Ty C, Kalra MK, and Vassileva J
- Subjects
- Aged, Female, Humans, Male, Middle Aged, Retrospective Studies, SARS-CoV-2, COVID-19 diagnostic imaging, Clinical Protocols, Internationality, Lung diagnostic imaging, Radiation Dosage, Tomography, X-Ray Computed statistics & numerical data
- Abstract
Background There is lack of guidance on specific CT protocols for imaging patients with coronavirus disease 2019 (COVID-19) pneumonia. Purpose To assess international variations in CT utilization, protocols, and radiation doses in patients with COVID-19 pneumonia. Materials and Methods In this retrospective data collection study, the International Atomic Energy Agency coordinated a survey between May and July 2020 regarding CT utilization, protocols, and radiation doses from 62 health care sites in 34 countries across five continents for CT examinations performed in patients with COVID-19 pneumonia. The questionnaire obtained information on local prevalence, method of diagnosis, most frequent imaging, indications for CT, and specific policies on use of CT in COVID-19 pneumonia. Collected data included general information (patient age, weight, clinical indication), CT equipment (CT make and model, year of installation, number of detector rows), scan protocols (body region, scan phases, tube current and potential), and radiation dose descriptors (CT dose index and dose length product). Descriptive statistics and generalized estimating equations were performed. Results Data from 782 patients (median age, 59 years [interquartile range, 15 years]) from 54 health care sites in 28 countries were evaluated. Less than one-half of the health care sites used CT for initial diagnosis of COVID-19 pneumonia and three-fourths used CT for assessing disease severity. CT dose index varied based on CT vendors (7-11 mGy; P < .001), number of detector rows (8-9 mGy; P < .001), year of CT installation (7-10 mGy; P = .006), and reconstruction techniques (7-10 mGy; P = .03). Multiphase chest CT examinations performed at 20% of sites (11 of 54) were associated with higher dose length product compared with single-phase chest CT examinations performed in 80% of sites (43 of 54) ( P = .008). Conclusion CT use, scan protocols, and radiation doses in patients with coronavirus disease 2019 pneumonia showed wide variation across health care sites within the same and between different countries. Many patients were imaged multiple times and/or with multiphase CT scan protocols. © RSNA, 2021 Online supplemental material is available for this article. See also the editorial by Lee in this issue.
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- 2021
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32. CovidCTNet: an open-source deep learning approach to diagnose covid-19 using small cohort of CT images.
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Javaheri T, Homayounfar M, Amoozgar Z, Reiazi R, Homayounieh F, Abbas E, Laali A, Radmard AR, Gharib MH, Mousavi SAJ, Ghaemi O, Babaei R, Mobin HK, Hosseinzadeh M, Jahanban-Esfahlan R, Seidi K, Kalra MK, Zhang G, Chitkushev LT, Haibe-Kains B, Malekzadeh R, and Rawassizadeh R
- Abstract
Coronavirus disease 2019 (Covid-19) is highly contagious with limited treatment options. Early and accurate diagnosis of Covid-19 is crucial in reducing the spread of the disease and its accompanied mortality. Currently, detection by reverse transcriptase-polymerase chain reaction (RT-PCR) is the gold standard of outpatient and inpatient detection of Covid-19. RT-PCR is a rapid method; however, its accuracy in detection is only ~70-75%. Another approved strategy is computed tomography (CT) imaging. CT imaging has a much higher sensitivity of ~80-98%, but similar accuracy of 70%. To enhance the accuracy of CT imaging detection, we developed an open-source framework, CovidCTNet, composed of a set of deep learning algorithms that accurately differentiates Covid-19 from community-acquired pneumonia (CAP) and other lung diseases. CovidCTNet increases the accuracy of CT imaging detection to 95% compared to radiologists (70%). CovidCTNet is designed to work with heterogeneous and small sample sizes independent of the CT imaging hardware. To facilitate the detection of Covid-19 globally and assist radiologists and physicians in the screening process, we are releasing all algorithms and model parameter details as open-source. Open-source sharing of CovidCTNet enables developers to rapidly improve and optimize services while preserving user privacy and data ownership.
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- 2021
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33. Artificial intelligence matches subjective severity assessment of pneumonia for prediction of patient outcome and need for mechanical ventilation: a cohort study.
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Ebrahimian S, Homayounieh F, Rockenbach MABC, Putha P, Raj T, Dayan I, Bizzo BC, Buch V, Wu D, Kim K, Li Q, Digumarthy SR, and Kalra MK
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- Adult, Aged, Aged, 80 and over, COVID-19 diagnostic imaging, Cohort Studies, Female, Humans, Image Processing, Computer-Assisted, Lung diagnostic imaging, Lung pathology, Male, Middle Aged, Organ Size, Prognosis, Tomography, X-Ray Computed, Young Adult, Artificial Intelligence, COVID-19 diagnosis, COVID-19 therapy, Respiration, Artificial
- Abstract
To compare the performance of artificial intelligence (AI) and Radiographic Assessment of Lung Edema (RALE) scores from frontal chest radiographs (CXRs) for predicting patient outcomes and the need for mechanical ventilation in COVID-19 pneumonia. Our IRB-approved study included 1367 serial CXRs from 405 adult patients (mean age 65 ± 16 years) from two sites in the US (Site A) and South Korea (Site B). We recorded information pertaining to patient demographics (age, gender), smoking history, comorbid conditions (such as cancer, cardiovascular and other diseases), vital signs (temperature, oxygen saturation), and available laboratory data (such as WBC count and CRP). Two thoracic radiologists performed the qualitative assessment of all CXRs based on the RALE score for assessing the severity of lung involvement. All CXRs were processed with a commercial AI algorithm to obtain the percentage of the lung affected with findings related to COVID-19 (AI score). Independent t- and chi-square tests were used in addition to multiple logistic regression with Area Under the Curve (AUC) as output for predicting disease outcome and the need for mechanical ventilation. The RALE and AI scores had a strong positive correlation in CXRs from each site (r
2 = 0.79-0.86; p < 0.0001). Patients who died or received mechanical ventilation had significantly higher RALE and AI scores than those with recovery or without the need for mechanical ventilation (p < 0.001). Patients with a more substantial difference in baseline and maximum RALE scores and AI scores had a higher prevalence of death and mechanical ventilation (p < 0.001). The addition of patients' age, gender, WBC count, and peripheral oxygen saturation increased the outcome prediction from 0.87 to 0.94 (95% CI 0.90-0.97) for RALE scores and from 0.82 to 0.91 (95% CI 0.87-0.95) for the AI scores. AI algorithm is as robust a predictor of adverse patient outcome (death or need for mechanical ventilation) as subjective RALE scores in patients with COVID-19 pneumonia.- Published
- 2021
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34. Integrative analysis for COVID-19 patient outcome prediction.
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Chao H, Fang X, Zhang J, Homayounieh F, Arru CD, Digumarthy SR, Babaei R, Mobin HK, Mohseni I, Saba L, Carriero A, Falaschi Z, Pasche A, Wang G, Kalra MK, and Yan P
- Subjects
- Adult, Aged, COVID-19 epidemiology, Datasets as Topic, Disease Progression, Female, Humans, Iran epidemiology, Italy epidemiology, Male, Middle Aged, Predictive Value of Tests, Prognosis, SARS-CoV-2, United States epidemiology, COVID-19 diagnostic imaging, Intensive Care Units statistics & numerical data, Patient Admission statistics & numerical data, Pneumonia, Viral diagnostic imaging
- Abstract
While image analysis of chest computed tomography (CT) for COVID-19 diagnosis has been intensively studied, little work has been performed for image-based patient outcome prediction. Management of high-risk patients with early intervention is a key to lower the fatality rate of COVID-19 pneumonia, as a majority of patients recover naturally. Therefore, an accurate prediction of disease progression with baseline imaging at the time of the initial presentation can help in patient management. In lieu of only size and volume information of pulmonary abnormalities and features through deep learning based image segmentation, here we combine radiomics of lung opacities and non-imaging features from demographic data, vital signs, and laboratory findings to predict need for intensive care unit (ICU) admission. To our knowledge, this is the first study that uses holistic information of a patient including both imaging and non-imaging data for outcome prediction. The proposed methods were thoroughly evaluated on datasets separately collected from three hospitals, one in the United States, one in Iran, and another in Italy, with a total 295 patients with reverse transcription polymerase chain reaction (RT-PCR) assay positive COVID-19 pneumonia. Our experimental results demonstrate that adding non-imaging features can significantly improve the performance of prediction to achieve AUC up to 0.884 and sensitivity as high as 96.1%, which can be valuable to provide clinical decision support in managing COVID-19 patients. Our methods may also be applied to other lung diseases including but not limited to community acquired pneumonia. The source code of our work is available at https://github.com/DIAL-RPI/COVID19-ICUPrediction., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier B.V. All rights reserved.)
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- 2021
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35. Low contrast volume dual-energy CT of the chest: Quantitative and qualitative assessment.
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Digumarthy SR, Singh R, Rastogi S, Otrakji A, Homayounieh F, Zhang EW, McDermott S, and Kalra MK
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- Adult, Contrast Media, Humans, Retrospective Studies, Thorax, Tomography, X-Ray Computed, Radiography, Dual-Energy Scanned Projection
- Abstract
Purpose: To evaluate the image quality of chest CT performed on dual-energy scanners using low contrast volume for routine chest (DECT-R) and pulmonary angiography (DECTPA) protocols., Materials and Methods: This retrospective study included dual-energy CT scans of chest performed with low contrast volume in 84 adults (34M:50F; Age 69 ± 16 years: Weight 71 ± 16kg). There were 42 patients with DECT-R and 42 patients with DECT-PA protocols. Images were reviewed by two thoracic radiologists. Qualitative assessment was done on a four-point scale, for subjective assessment of contrast enhancement and artifacts (1 = Excellent, 2 = optimal, 3 = suboptimal, and 4 = Limited) in the pulmonary arteries and thoracic aorta, on virtual monoenergetic and material decomposition iodine (MDI) images. Quantitative assessment was performed by measuring the CT (Hounsfield) units in aorta and pulmonary arteries. The estimated glomerular filtration rate (eGFR) was calculated before and after CT scans. Two tailed student's t-test was performed to assess the significance of findings, and strength of correlation between readers was determined by Cohen's kappa test., Results: DECT-PA and DECT-R demonstrated excellent/adequate contrast density within the pulmonary arteries (up to segmental branch), and aorta. There was no suboptimal or limited examination. There was strong interobserver agreement for arterial enhancement in pulmonary arteries (kappa = 0.62-0.89) and for thoracic aorta (kappa = 0.62-0.94). Pulmonary emboli were seen in 3/42(7%) in DECT-R and in 5/42(12%) in DECT-PA. There was no significant change in eGFR before and after IV contrast injection (p = 0.46-0.52)., Conclusion: DECT-R and DECT-PA performed with low contrast volume provide diagnostic quality opacification of the pulmonary vessels and aorta vessels., (Copyright © 2020 Elsevier Inc. All rights reserved.)
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- 2021
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36. Chest CT practice and protocols for COVID-19 from radiation dose management perspective.
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Kalra MK, Homayounieh F, Arru C, Holmberg O, and Vassileva J
- Subjects
- COVID-19, Coronavirus Infections epidemiology, Disease Progression, Humans, Pneumonia, Viral epidemiology, Radiation Dosage, SARS-CoV-2, Betacoronavirus, Coronavirus Infections diagnosis, Pandemics, Pneumonia, Viral diagnosis, Tomography, X-Ray Computed methods
- Abstract
The global pandemic of coronavirus disease 2019 (COVID-19) has upended the world with over 6.6 million infections and over 391,000 deaths worldwide. Reverse-transcription polymerase chain reaction (RT-PCR) assay is the preferred method of diagnosis of COVID-19 infection. Yet, chest CT is often used in patients with known or suspected COVID-19 due to regional preferences, lack of availability of PCR assays, and false-negative PCR assays, as well as for monitoring of disease progression, complications, and treatment response. The International Atomic Energy Agency (IAEA) organized a webinar to discuss CT practice and protocol optimization from a radiation protection perspective on April 9, 2020, and surveyed participants from five continents. We review important aspects of CT in COVID-19 infection from the justification of its use to specific scan protocols for optimizing radiation dose and diagnostic information.Key Points• Chest CT provides useful information in patients with moderate to severe COVID-19 pneumonia.• When indicated, chest CT in most patients with COVID-19 pneumonia must be performed with non-contrast, low-dose protocol.• Although chest CT has high sensitivity for diagnosis of COVID-19 pneumonia, CT findings are non-specific and overlap with other viral infections including influenza and H1N1.
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- 2020
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37. Severity and Consolidation Quantification of COVID-19 From CT Images Using Deep Learning Based on Hybrid Weak Labels.
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Wu D, Gong K, Arru CD, Homayounieh F, Bizzo B, Buch V, Ren H, Kim K, Neumark N, Xu P, Liu Z, Fang W, Xie N, Tak WY, Park SY, Lee YR, Kang MK, Park JG, Carriero A, Saba L, Masjedi M, Talari H, Babaei R, Mobin HK, Ebrahimian S, Dayan I, Kalra MK, and Li Q
- Subjects
- Algorithms, COVID-19 virology, Female, Humans, Male, Retrospective Studies, SARS-CoV-2 isolation & purification, Severity of Illness Index, COVID-19 diagnostic imaging, Deep Learning, Tomography, X-Ray Computed methods
- Abstract
Early and accurate diagnosis of Coronavirus disease (COVID-19) is essential for patient isolation and contact tracing so that the spread of infection can be limited. Computed tomography (CT) can provide important information in COVID-19, especially for patients with moderate to severe disease as well as those with worsening cardiopulmonary status. As an automatic tool, deep learning methods can be utilized to perform semantic segmentation of affected lung regions, which is important to establish disease severity and prognosis prediction. Both the extent and type of pulmonary opacities help assess disease severity. However, manually pixel-level multi-class labelling is time-consuming, subjective, and non-quantitative. In this article, we proposed a hybrid weak label-based deep learning method that utilize both the manually annotated pulmonary opacities from COVID-19 pneumonia and the patient-level disease-type information available from the clinical report. A UNet was firstly trained with semantic labels to segment the total infected region. It was used to initialize another UNet, which was trained to segment the consolidations with patient-level information using the Expectation-Maximization (EM) algorithm. To demonstrate the performance of the proposed method, multi-institutional CT datasets from Iran, Italy, South Korea, and the United States were utilized. Results show that our proposed method can predict the infected regions as well as the consolidation regions with good correlation to human annotation.
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- 2020
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38. Accuracy of radiomics for differentiating diffuse liver diseases on non-contrast CT.
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Homayounieh F, Saini S, Mostafavi L, Doda Khera R, Sühling M, Schmidt B, Singh R, Flohr T, and Kalra MK
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- Aged, Diagnosis, Differential, Fatty Liver diagnostic imaging, Female, Humans, Iron Overload diagnostic imaging, Liver Cirrhosis diagnostic imaging, Male, Middle Aged, Retrospective Studies, Sensitivity and Specificity, Liver diagnostic imaging, Liver Diseases diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
Purpose: Radiomics help move cross-sectional imaging into the domain of quantitative imaging to assess the lesions, their stoma as well as in their temporal monitoring. We applied and assessed the accuracy of radiomics for differentiating healthy liver from diffuse liver diseases (cirrhosis, steatosis, amiodarone deposition, and iron overload) on non-contrast abdomen CT images in an institutional-reviewed board-approved, retrospective study., Methods: Our study included 300 adult patients (mean age 63 ± 16 years; 171 men, 129 women) who underwent non-contrast abdomen CT and had either a healthy liver (n = 100 patients) or an evidence of diffuse liver disease (n = 200). The diffuse liver diseases included steatosis (n = 50), cirrhosis (n = 50), hyperdense liver due to amiodarone deposition (n = 50), or iron overload (n = 50). We manually segmented the liver in one section at the level of the porta hepatis (all 300 patients) and then over the entire liver volume (50 patients). Radiomics were estimated for the liver, and statistical comparison was performed with multiple logistic regression and random forest classifier., Results: With random forest classifier, the AUC for radiomics ranged between 0.72 (iron overload vs. healthy liver) and 0.98 (hepatic steatosis vs. healthy liver) for differentiating diffuse liver disease from the healthy liver. Combined root mean square and gray-level co-occurrence matrix had the highest AUC (AUC:0.99, p < 0.01) for differentiating healthy liver from steatosis. Radiomics were more accurate for differentiating healthy liver from amiodarone (AUC:0.93) than from iron overload (AUC:0.79)., Conclusion: Radiomics enable differentiation of healthy liver from hepatic steatosis, cirrhosis, amiodarone deposition, and iron overload from a single section of non-contrast abdominal CT. The high accuracy of radiomics coupled with rapid segmentation of the region of interest, radiomics estimation, and statistical analyses within the same prototype makes a compelling case for bringing radiomics to clinical use for improving reporting in evaluation of healthy liver and diffuse liver diseases.
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- 2020
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39. Clinical and imaging features predict mortality in COVID-19 infection in Iran.
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Homayounieh F, Zhang EW, Babaei R, Karimi Mobin H, Sharifian M, Mohseni I, Kuo A, Arru C, Kalra MK, and Digumarthy SR
- Subjects
- Adult, Aged, Betacoronavirus, COVID-19, Comorbidity, Female, Humans, Image Processing, Computer-Assisted, Iran, Logistic Models, Male, Middle Aged, Pandemics, Radiography, Thoracic, Retrospective Studies, Risk Factors, SARS-CoV-2, Severity of Illness Index, Tertiary Care Centers, Tomography, X-Ray Computed, Coronavirus Infections diagnostic imaging, Coronavirus Infections mortality, Pneumonia, Viral diagnostic imaging, Pneumonia, Viral mortality
- Abstract
The new coronavirus disease 2019 (COVID-19) pandemic has challenged many healthcare systems around the world. While most of the current understanding of the clinical features of COVID-19 is derived from Chinese studies, there is a relative paucity of reports from the remaining global health community. In this study, we analyze the clinical and radiologic factors that correlate with mortality odds in COVID-19 positive patients from a tertiary care center in Tehran, Iran. A retrospective cohort study of 90 patients with reverse transcriptase-polymerase chain reaction (RT-PCR) positive COVID-19 infection was conducted, analyzing demographics, co-morbidities, presenting symptoms, vital signs, laboratory values, chest radiograph findings, and chest CT features based on mortality. Chest radiograph was assessed using the Radiographic Assessment of Lung Edema (RALE) scoring system. Chest CTs were assessed according to the opacification pattern, distribution, and standardized severity score. Initial and follow-up Chest CTs were compared if available. Multiple logistic regression was used to generate a prediction model for mortality. The 90 patients included 59 men and 31 women (59.4 ± 16.6 years), including 21 deceased and 69 surviving patients. Among clinical features, advanced age (p = 0.02), low oxygenation saturation (p<0.001), leukocytosis (p = 0.02), low lymphocyte fraction (p = 0.03), and low platelet count (p = 0.048) were associated with increased mortality. High RALE score on initial chest radiograph (p = 0.002), presence of pleural effusions on initial CT chest (p = 0.005), development of pleural effusions on follow-up CT chest (p = 0.04), and worsening lung severity score on follow-up CT Chest (p = 0.03) were associated with mortality. A two-factor logistic model using patient age and oxygen saturation was created, which demonstrates 89% accuracy and area under the ROC curve of 0.86 (p<0.0001). Specific demographic, clinical, and imaging features are associated with increased mortality in COVID-19 infections. Attention to these features can help optimize patient management., Competing Interests: The authors have declared that no competing interests exist.
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- 2020
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40. Integrative Analysis for COVID-19 Patient Outcome Prediction.
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Chao H, Fang X, Zhang J, Homayounieh F, Arru CD, Digumarthy SR, Babaei R, Mobin HK, Mohseni I, Saba L, Carriero A, Falaschi Z, Pasche A, Wang G, Kalra MK, and Yan P
- Abstract
While image analysis of chest computed tomography (CT) for COVID-19 diagnosis has been intensively studied, little work has been performed for image-based patient outcome prediction. Management of high-risk patients with early intervention is a key to lower the fatality rate of COVID-19 pneumonia, as a majority of patients recover naturally. Therefore, an accurate prediction of disease progression with baseline imaging at the time of the initial presentation can help in patient management. In lieu of only size and volume information of pulmonary abnormalities and features through deep learning based image segmentation, here we combine radiomics of lung opacities and non-imaging features from demographic data, vital signs, and laboratory findings to predict need for intensive care unit (ICU) admission. To our knowledge, this is the first study that uses holistic information of a patient including both imaging and non-imaging data for outcome prediction. The proposed methods were thoroughly evaluated on datasets separately collected from three hospitals, one in the United States, one in Iran, and another in Italy, with a total 295 patients with reverse transcription polymerase chain reaction (RT-PCR) assay positive COVID-19 pneumonia. Our experimental results demonstrate that adding non-imaging features can significantly improve the performance of prediction to achieve AUC up to 0.884 and sensitivity as high as 96.1%, which can be valuable to provide clinical decision support in managing COVID-19 patients. Our methods may also be applied to other lung diseases including but not limited to community acquired pneumonia. The source code of our work is available at https://github.com/DIAL-RPI/COVID19-ICUPrediction.
- Published
- 2020
41. Computed Tomography Radiomics Can Predict Disease Severity and Outcome in Coronavirus Disease 2019 Pneumonia.
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Homayounieh F, Babaei R, Karimi Mobin H, Arru CD, Sharifian M, Mohseni I, Zhang E, Digumarthy SR, and Kalra MK
- Subjects
- COVID-19, Disease Progression, Female, Humans, Male, Middle Aged, Pandemics, Predictive Value of Tests, Prognosis, Retrospective Studies, SARS-CoV-2, Severity of Illness Index, Betacoronavirus, Coronavirus Infections diagnosis, Lung diagnostic imaging, Pneumonia, Viral diagnosis, Tomography, X-Ray Computed methods
- Abstract
Purpose: This study aimed to assess if computed tomography (CT) radiomics can predict the severity and outcome of patients with coronavirus disease 2019 (COVID-19) pneumonia., Methods: This institutional ethical board-approved study included 92 patients (mean age, 59 ± 17 years; 57 men, 35 women) with positive reverse transcription polymerase chain reaction assay for COVID-19 infection who underwent noncontrast chest CT. Two radiologists evaluated all chest CT examinations and recorded opacity type, distribution, and extent of lobar involvement. Information on symptom duration before hospital admission, the period of hospital admission, presence of comorbid conditions, laboratory data, and outcomes (recovery or death) was obtained from the medical records. The entire lung volume was segmented on thin-section Digital Imaging and Communication in Medicine images to derive whole-lung radiomics. Data were analyzed using multiple logistic regression with receiver operator characteristic area under the curve (AUC) as the output., Results: Computed tomography radiomics (AUC, 0.99) outperformed clinical variables (AUC, 0.89) for prediction of the extent of pulmonary opacities related to COVID-19 pneumonia. Type of pulmonary opacities could be predicted with CT radiomics (AUC, 0.77) but not with clinical or laboratory data (AUC, <0.56; P > 0.05). Prediction of patient outcome with radiomics (AUC, 0.85) improved to an AUC of 0.90 with the addition of clinical variables (patient age and duration of presenting symptoms before admission). Among clinical variables, the combination of peripheral capillary oxygen saturation on hospital admission, duration of symptoms, platelet counts, and patient age provided an AUC of 0.81 for predicting patient outcomes., Conclusions: Radiomics from noncontrast CT reliably predict disease severity (AUC, 0.99) and outcome (AUC, 0.85) in patients with COVID-19 pneumonia.
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- 2020
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42. Semiautomatic Segmentation and Radiomics for Dual-Energy CT: A Pilot Study to Differentiate Benign and Malignant Hepatic Lesions.
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Homayounieh F, Singh R, Nitiwarangkul C, Lades F, Schmidt B, Sedlmair M, Saini S, and Kalra MK
- Subjects
- Aged, Aged, 80 and over, Contrast Media, Diagnosis, Differential, Electronic Data Processing, Female, Humans, Iodine Compounds, Male, Middle Aged, Pilot Projects, Radiography, Dual-Energy Scanned Projection, Retrospective Studies, Liver Diseases diagnostic imaging, Liver Neoplasms diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
OBJECTIVE. This study assessed a machine learning-based dual-energy CT (DECT) tumor analysis prototype for semiautomatic segmentation and radiomic analysis of benign and malignant liver lesions seen on contrast-enhanced DECT. MATERIALS AND METHODS. This institutional review board-approved study included 103 adult patients (mean age, 65 ± 15 [SD] years; 53 men, 50 women) with benign (60/103) or malignant (43/103) hepatic lesions on contrast-enhanced dual-source DECT. Most malignant lesions were histologically proven; benign lesions were either stable on follow-up CT or had characteristic benign features on MRI. Low- and high-kilovoltage datasets were deidentified, exported offline, and processed with the DECT tumor analysis for semiautomatic segmentation of the volume and rim of each liver lesion. For each segmentation, contrast enhancement and iodine concentrations as well as radiomic features were derived for different DECT image series. Statistical analyses were performed to determine if DECT tumor analysis and radiomics can differentiate benign from malignant liver lesions. RESULTS. Normalized iodine concentration and mean iodine concentration in the benign and malignant lesions were significantly different ( p < 0.0001-0.0084; AUC, 0.695-0.856). Iodine quantification and radiomic features from lesion rims (AUC, ≤ 0.877) had higher accuracy for differentiating liver lesions compared with the values from lesion volumes (AUC, ≤ 0.856). There was no difference in the accuracies of DECT iodine quantification (AUC, 0.91) and radiomics (AUC, 0.90) for characterizing liver lesions. CONCLUSION. DECT radiomics were more accurate than iodine quantification for differentiating solid benign and malignant hepatic lesions.
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- 2020
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43. CT Radiomics, Radiologists, and Clinical Information in Predicting Outcome of Patients with COVID-19 Pneumonia.
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Homayounieh F, Ebrahimian S, Babaei R, Mobin HK, Zhang E, Bizzo BC, Mohseni I, Digumarthy SR, and Kalra MK
- Abstract
Purpose: To compare prediction of disease outcome, severity, and patient triage in coronavirus disease 2019 (COVID-19) pneumonia with whole lung radiomics, radiologists' interpretation, and clinical variables., Materials and Methods: This institutional review board-approved retrospective study included 315 adult patients (mean age, 56 years [range, 21-100 years], 190 men, 125 women) with COVID-19 pneumonia who underwent noncontrast chest CT. All patients (inpatients, n = 210; outpatients, n = 105) were followed-up for at least 2 weeks to record disease outcome. Clinical variables, such as presenting symptoms, laboratory data, peripheral oxygen saturation, and comorbid diseases, were recorded. Two radiologists assessed each CT in consensus and graded the extent of pulmonary involvement (by percentage of involved lobe) and type of opacities within each lobe. Radiomics were obtained for the entire lung, and multiple logistic regression analyses with areas under the curve (AUCs) as outputs were performed., Results: Most patients (276/315, 88%) recovered from COVID-19 pneumonia; 36/315 patients (11%) died, and 3/315 patients (1%) remained admitted in the hospital. Radiomics differentiated chest CT in outpatient versus inpatient with an AUC of 0.84 ( P < .005), while radiologists' interpretations of disease extent and opacity type had an AUC of 0.69 ( P < .0001). Whole lung radiomics were superior to the radiologists' interpretation for predicting patient outcome in terms of intensive care unit (ICU) admission (AUC: 0.75 vs 0.68) and death (AUC: 0.81 vs 0.68) ( P < .002). The addition of clinical variables to radiomics improved the AUC to 0.84 for predicting ICU admission., Conclusion: Radiomics from noncontrast chest CT were superior to radiologists' assessment of extent and type of pulmonary opacities in predicting COVID-19 pneumonia outcome, disease severity, and patient triage.© RSNA, 2020., Competing Interests: Disclosures of Conflicts of Interest: F.H. disclosed no relevant relationships. S.E. disclosed no relevant relationships. R.B. disclosed no relevant relationships. H.K.M. disclosed no relevant relationships. E.Z. disclosed no relevant relationships. B.C.B disclosed no relevant relationships. I.M. disclosed no relevant relationships. S.R.D. Activities related to the present article: disclosed no relevant relationships. Activities not related to the present article: author paid for lecture by Siemens; Siemens paid for travel fees for conference and speaking; institution receives payment for independent image analysis for hospital contracted clinical research trial programs by Merck, Pfizer, Bristol Myers Squibb, Novartis, Roche, Polaris, Cascadian, Abbvie, Gradalis, Clinical Bay, and Zai Laboratories; institution receives research funding by Iunit. Other relationships: disclosed no relevant relationships. M.K.K. Activities related to the present article: disclosed no relevant relationships. Activities not related to the present article: institution received research grant from Siemens Healthineers for unrelated research projects. Other relationships: received research grant from Riverain for unrelated projects., (2021 by the Radiological Society of North America, Inc.)
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- 2020
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44. CT protocols and radiation doses for hematuria and urinary stones: Comparing practices in 20 countries.
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Gershan V, Homayounieh F, Singh R, Avramova-Cholakova S, Faj D, Georgiev E, Girjoaba O, Griciene B, Gruppetta E, Hadnadjev Šimonji D, Kharuzhyk S, Klepanec A, Kostova-Lefterova D, Kulikova A, Lasic I, Milatovic A, Paulo G, Vassileva J, and Kalra MK
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- Adult, Female, Humans, Male, Middle Aged, Urinary Tract diagnostic imaging, Urography methods, Hematuria diagnostic imaging, Radiation Dosage, Tomography, X-Ray Computed methods, Urinary Calculi diagnostic imaging
- Abstract
Purpose: Patients with hematuria and renal colic often undergo CT scanning. The purpose of our study was to assess variations in CT protocols and radiation doses for evaluation of hematuria and urinary stones in 20 countries., Method: The International Atomic Energy Agency (IAEA) surveyed practices in 51 hospitals from 20 countries in the European region according to the IAEA Technical cooperation classification and obtained following information for three CT protocols (urography, urinary stones, and routine abdomen-pelvis CT) for 1276 patients: patient information (weight, clinical indication), scanner information (scan vendor, scanner name, number of detector rows), scan parameters (such as number of phases, scan start and end locations, mA, kV), and radiation dose descriptors (CTDI
vol , DLP). Two radiologists assessed the appropriateness of clinical indications and number of scan phases using the ESR Referral Guidelines and ACR Appropriateness Criteria. Descriptive statistics and Student's t tests were performed., Results: Most institutions use 3-6 phase CT urography protocols (80 %, median DLP 1793-3618 mGy.cm) which were associated with 2.4-4.9-fold higher dose compared to 2-phase protocol (20 %, 740 mGy.cm) (p < 0.0001). Likewise, 52 % patients underwent 3-5 phase routine abdomen- pelvis CT (1574-2945 mGy.cm) as opposed to 37 % scanned with a single-phase routine CT (676 mGy.cm). The median DLP for urinary stones CT (516 mGy.cm) were significantly lower than the median DLP for the other two CT protocols (p < 0.0001)., Conclusions: Few institutions (4/13) use low dose CT for urinary stones. There are substantial variations in CT urography and routine abdomen-pelvis CT protocols result in massive radiation doses (up to 2945-3618 mGy.cm)., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
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45. Quantitative lobar pulmonary perfusion assessment on dual-energy CT pulmonary angiography: applications in pulmonary embolism.
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Singh R, Nie RZ, Homayounieh F, Schmidt B, Flohr T, and Kalra MK
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- Female, Humans, Male, Middle Aged, Pulmonary Embolism physiopathology, Retrospective Studies, Computed Tomography Angiography methods, Lung diagnostic imaging, Pulmonary Circulation physiology, Pulmonary Embolism diagnosis
- Abstract
Purpose: To assess quantitative lobar pulmonary perfusion on DECT-PA in patients with and without pulmonary embolism (PE)., Materials and Methods: Our retrospective study included 88 adult patients (mean age 56 ± 19 years; 38 men, 50 women) who underwent DECT-PA (40 PE present; 48 PE absent) on a 384-slice, third-generation, dual-source CT. All DECT-PA examinations were reviewed to record the presence and location of occlusive and non-occlusive PE. Transverse thin (1 mm) DECT images (80/150 kV) were de-identified and exported offline for processing on a stand-alone deep learning-based prototype for automatic lung lobe segmentation and to obtain the mean attenuation numbers (in HU), contrast amount (in mg), and normalized iodine concentration per lung and lobe. The zonal volumes and mean enhancement were obtained from the Lung Analysis™ application. Data were analyzed with receiver operating characteristics (ROC) and analysis of variance (ANOVA)., Results: The automatic lung lobe segmentation was accurate in all DECT-PA (88; 100%). Both lobar and zonal perfusions were significantly lower in patients with PE compared with those without PE (p < 0.0001). The mean attenuation numbers, contrast amounts, and normalized iodine concentrations in different lobes were significantly lower in the patients with PE compared with those in the patients without PE (AUC 0.70-0.78; p < 0.0001). Patients with occlusive PE had significantly lower quantitative perfusion compared with those without occlusive PE (p < 0.0001)., Conclusion: The deep learning-based prototype enables accurate lung lobe segmentation and assessment of quantitative lobar perfusion from DECT-PA., Key Points: • Deep learning-based prototype enables accurate lung lobe segmentation and assessment of quantitative lobar perfusion from DECT-PA. • Quantitative lobar perfusion parameters (AUC up to 0.78) have a higher predicting presence of PE on DECT-PA examinations compared with the zonal perfusion parameters (AUC up to 0.72). • The lobar-normalized iodine concentration has the highest AUC for both presence of PE and for differentiating occlusive and non-occlusive PE.
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- 2020
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46. Viewing Imaging Studies: How Patient Location and Imaging Site Affect Referring Physicians.
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Homayounieh F, Singh R, Chen T, Sugarman EJ, Schultz TJ, Digumarthy SR, Dreyer KJ, and Kalra MK
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- Abdomen, Communication, Electronic Health Records, Humans, Physicians, Tomography, X-Ray Computed
- Abstract
The purpose of this study was to assess if clinical indications, patient location, and imaging sites predict the viewing pattern of referring physicians for CT and MR of the head, chest, and abdomen. Our study included 166,953 CT/MR images of head/chest/abdomen in 2016-2017 in the outpatient (OP, n = 83,981 CT/MR), inpatient (IP, n = 51,052), and emergency (ED, n = 31,920) settings. There were 125,329 CT/MR performed in the hospital setting and 41,624 in one of the nine off-campus locations. We extracted information regarding body region (head/chest/abdomen), patient location, and imaging site from the electronic medical records (EPIC). We recorded clinical indications and the number of times referring physicians viewed CT/MR (defined as the number of separate views of imaging in the EPIC). Data were analyzed with the Microsoft SQL and SPSS statistical software. About 33% of IP CT and MR studies are viewed > 6 times compared to 7% for OP and 19% of ED studies (p < 0.001). Conversely, most OP studies (55%) were viewed 1-2 times only, compared to 21% for IP and 38% for ED studies (p < 0.001). In-hospital exams are viewed (≥ 6 views; 39% studies) more frequently than off-campus imaging (≥ 6 views; 17% studies) (p < 0.001). For head CT/MR, certain clinical indications (i.e., stroke) had higher viewing rates compared to other clinical indications such as malignancy, headache, and dizziness. Conversely, for chest CT, dyspnea-hypoxia had much higher viewing rates (> 6 times) in IP (55%) and ED (46%) than in OP settings (22%). Patient location and imaging site regardless of clinical indications have a profound effect on viewing patterns of referring physicians. Understanding viewing patterns of the referring physicians can help guide interpretation priorities and finding communication for imaging exams based on patient location, imaging site, and clinical indications. The information can help in the efficient delivery of patient care.
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- 2020
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47. Can Dual-Energy Computed Tomography Quantitative Analysis and Radiomics Differentiate Normal Liver From Hepatic Steatosis and Cirrhosis?
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Doda Khera R, Homayounieh F, Lades F, Schmidt B, Sedlmair M, Primak A, Saini S, and Kalra MK
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- Contrast Media, Diagnosis, Differential, Evaluation Studies as Topic, Female, Humans, Liver diagnostic imaging, Male, Middle Aged, Radiographic Image Enhancement methods, Radiography, Dual-Energy Scanned Projection methods, Retrospective Studies, Fatty Liver diagnostic imaging, Liver Cirrhosis diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
Objectives: This study aimed to assess if dual-energy computed tomography (DECT) quantitative analysis and radiomics can differentiate normal liver, hepatic steatosis, and cirrhosis., Materials and Methods: Our retrospective study included 75 adult patients (mean age, 54 ± 16 years) who underwent contrast-enhanced, dual-source DECT of the abdomen. We used Dual-Energy Tumor Analysis prototype for semiautomatic liver segmentation and DECT and radiomic features. The data were analyzed with multiple logistic regression and random forest classifier to determine area under the curve (AUC)., Results: Iodine quantification (AUC, 0.95) and radiomic features (AUC, 0.97) differentiate between healthy and abnormal liver. Combined fat ratio percent and mean mixed CT values (AUC, 0.99) were the strongest differentiators of healthy and steatotic liver. The most accurate differentiating parameters of normal liver and cirrhosis were a combination of first-order statistics (90th percentile), gray-level run length matrix (short-run low gray-level emphasis), and gray-level size zone matrix (gray-level nonuniformity normalized; AUC, 0.99)., Conclusion: Dual-energy computed tomography iodine quantification and radiomics accurately differentiate normal liver from steatosis and cirrhosis from single-section analyses.
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- 2020
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48. Radiation Dose for Multiregion CT Protocols: Challenges and Limitations.
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Singh R, Szczykutowicz TP, Homayounieh F, Vining R, Kanal K, Digumarthy SR, and Kalra MK
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- Adult, Female, Humans, Male, Radiography, Abdominal, Radiography, Thoracic, Retrospective Studies, Tomography Scanners, X-Ray Computed, Radiation Dosage, Tomography, X-Ray Computed methods
- Abstract
OBJECTIVE. The purpose of this study was to devise a method for classification of individual chest and abdomen-pelvis CT doses for multiregion CT. MATERIALS AND METHODS. A retrospective analysis of volume CT dose index (CTDI
vol ) and dose-length product (DLP) associated with chest (150 adult patients), abdomen-pelvis (150 patients), and multiregion combined chest-abdomen-pelvis CT (210 patients; 60 single-run chest-abdomen-pelvis CT; 150 split-run with separate chest and abdomen-pelvis CT). All 510 CT examinations were performed with one of four MDCT scanners (64-, 64-, 128-, 256-MDCT). CTDIvol , DLP, and scan length were recorded. Scan lengths were obtained for these 510 CT examinations and for an additional 7745 examinations of patients at another institution. Data were analyzed by ANOVA and ROC analysis. RESULTS. The respective DLPs (chest, 258-381 mGy · cm; abdomen-pelvis, 360-433 mGy · cm; single-run chest-abdomen-pelvis, 595-636 mGy · cm) and scan lengths (chest, 31-33 cm; abdomen-pelvis, 45-46 cm; single-run chest-abdomen-pelvis, 63-65 cm) for chest, abdomen-pelvis, and multiregion combined chest-abdomen-pelvis CT were significantly different ( p < 0.0001). For split-run, chest-abdomen-pelvis CT, scan lengths and dose indexes for individual body regions were not different from those of single-body-region CT ( p > 0.05). ROC analysis of chest and abdomen examinations showed an ideal scan length threshold of 38 cm to differentiate abdomen-pelvis CT from chest CT with accuracy of 97.39% and an AUC of 0.9764. CONCLUSION. Despite interscanner variabilities in CT radiation doses, shorter scan length for chest than for abdomen-pelvis CT enables accurate binning of radiation doses for split-run combined chest-abdomen-pelvis CT.- Published
- 2019
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49. Comparison of image quality and radiation doses between rapid kV-switching and dual-source DECT techniques in the chest.
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Singh R, Sharma A, McDermott S, Homayounieh F, Rastogi S, Flores EJ, Shepard JAO, Gilman MD, and Digumarthy SR
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- Artifacts, Contrast Media, Female, Humans, Image Processing, Computer-Assisted methods, Image Processing, Computer-Assisted standards, Iodine, Male, Middle Aged, Multidetector Computed Tomography methods, Radiography, Thoracic methods, Retrospective Studies, Multidetector Computed Tomography standards, Radiation Dosage, Radiography, Thoracic standards
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Purpose: To compare image quality and radiation doses for chest DECT acquired with dual-source and rapid-kV switching techniques., Materials and Methods: Our institutional Review Board approved retrospective study included 97 patients (54 men, 43 women; 63 ± 14 years) who underwent contrast-enhanced chest DECT with both single source, rapid kV-switching (SS-DECT) and dual source (DS-DECT) techniques per standard of care departmental protocols. Reconstructed images from both scanners had identical section thickness and section interval for virtual monoenergetic and material decomposition iodine (MDI) images. Two thoracic radiologists independently evaluated all DECT for findings, quality of images, perfusion defects (MDI), and presence of artifacts. Radiation dose descriptor, size-specific dose estimates (SSDE), was recorded. Data were analyzed with Wilcoxon Signed Rank and Cohen's Kappa tests., Results: There were no significant differences in patient weight or SSDE for the two DECT techniques (p > 0.06). Both radiologists reported no difference in lesion and artifact evaluation on the virtual monoenergetic images from either technique (p > 0.05). However, SS-DECT (in 63-71/97 patients) had substantial artifactual heterogeneity in pulmonary perfusion on MDI images compared to none on DS-DECT (p < 0.001)., Conclusion: Despite identical patients and associated radiation doses, there were substantial differences in material decomposition iodine images generated from SS-DECT and DS-DECT techniques. Pulmonary heterogeneity on MDI images from SS-DECT leads to artifactual areas of low perfusion and can confound interpretation of true pulmonary perfusion., (Copyright © 2019 Elsevier B.V. All rights reserved.)
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- 2019
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50. Deploying Clinical Process Improvement Strategies to Reduce Motion Artifacts and Expiratory Phase Scanning in Chest CT.
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Doda Khera R, Singh R, Homayounieh F, Stone E, Redel T, Savage CA, Stockton K, Shepard JO, Kalra MK, and Digumarthy SR
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- Female, Humans, Male, Middle Aged, Surveys and Questionnaires, Artifacts, Exhalation, Motion, Thorax diagnostic imaging, Tomography, X-Ray Computed
- Abstract
We hypothesized that clinical process improvement strategies can reduce frequency of motion artifacts and expiratory phase scanning in chest CT. We reviewed 826 chest CT to establish the baseline frequency. Per clinical process improvement guidelines, we brainstormed corrective measures and priority-pay-off matrix. The first intervention involved education of CT technologists, following which 795 chest CT were reviewed. For the second intervention, instructional videos on optimal breath-hold were shown to 245 adult patients just before their chest CT. Presence of motion artifacts and expiratory phase scanning was assessed. We also reviewed 311 chest CT scans belonging to a control group of patients who did not see the instructional videos. Pareto and percentage run charts were created for baseline and post-intervention data. Baseline incidence of motion artifacts and expiratory phase scanning in chest CT was 35% (292/826). There was no change in the corresponding incidence following the first intervention (36%; 283/795). Respiratory motion and expiratory phase chest CT with the second intervention decreased (8%, 20/245 patients). Instructional videos for patients (and not education and training of CT technologists) reduce the frequency of motion artifacts and expiratory phase scanning in chest CT.
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- 2019
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