475 results on '"Hoffman BM"'
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2. Exercise and pharmacotherapy in patients with major depression: one-year follow-up of the SMILE study.
- Author
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Hoffman BM, Babyak MA, Craighead WE, Sherwood A, Doraiswamy PM, Coons MJ, Blumenthal JA, Hoffman, Benson M, Babyak, Michael A, Craighead, W Edward, Sherwood, Andrew, Doraiswamy, P Murali, Coons, Michael J, and Blumenthal, James A
- Published
- 2011
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3. Aerobic exercise and neurocognitive performance: a meta-analytic review of randomized controlled trials.
- Author
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Smith PJ, Blumenthal JA, Hoffman BM, Cooper H, Strauman TA, Welsh-Bohmer K, Browndyke JN, Sherwood A, Smith, Patrick J, Blumenthal, James A, Hoffman, Benson M, Cooper, Harris, Strauman, Timothy A, Welsh-Bohmer, Kathleen, Browndyke, Jeffrey N, and Sherwood, Andrew
- Published
- 2010
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4. Exercise fails to improve neurocognition in depressed middle-aged and older adults.
- Author
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Hoffman BM, Blumenthal JA, Babyak MA, Smith PJ, Rogers SD, Doraiswamy PM, and Sherwood A
- Abstract
PURPOSE: Although cross-sectional studies have demonstrated an association between higher levels of aerobic fitness and improved neurocognitive function, there have been relatively few interventional studies investigating this relationship, and results have been inconsistent. We assessed the effects of aerobic exercise on neurocognitive function in a randomized controlled trial of patients with major depressive disorder (MDD). METHODS: Two-hundred and two sedentary men (n = 49) and women (n = 153), aged 40 yr and over and who met diagnostic criteria for MDD, were randomly assigned to the following: a) supervised exercise, b) home-based exercise, c) sertraline, or d) placebo pill. Before and after 4 months of treatment, participants completed measures of: Executive Function (Trail Making Test B-A difference score, Stroop Color-Word, Ruff 2 & 7 Test, Digit Symbol), Verbal Memory (Logical Memory, Verbal Paired Associates), and Verbal Fluency/Working Memory (Animal Naming, Controlled Oral Word Association Test, Digit Span). Multivariate analyses of covariance were performed to test the effects of treatment on posttreatment neuropsychological test scores, with baseline neuropsychological test scores, age, education, and change in depression scores entered as covariates. RESULTS: The performance of exercise participants was no better than participants receiving placebo across all neuropsychological tests. Exercise participants performed better than participants receiving sertraline on tests of executive function but not on tests of verbal memory or verbal fluency/working memory. CONCLUSIONS: We found little evidence to support the benefits of an aerobic exercise intervention on neurocognitive performance in patients with MDD. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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5. Exercise and pharmacotherapy in the treatment of major depressive disorder.
- Author
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Blumenthal JA, Babyak MA, Doraiswamy PM, Watkins L, Hoffman BM, Barbour KA, Herman S, Craighead WE, Brosse AL, Waugh R, Hinderliter A, Sherwood A, Blumenthal, James A, Babyak, Michael A, Doraiswamy, P Murali, Watkins, Lana, Hoffman, Benson M, Barbour, Krista A, Herman, Steve, and Craighead, W Edward
- Published
- 2007
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6. Cerebrovascular risk factors, vascular disease, and neuropsychological outcomes in adults with major depression.
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Smith PJ, Blumenthal JA, Babyak MA, Hoffman BM, Doraiswamy PM, Waugh R, Hinderliter A, Sherwood A, Smith, Patrick J, Blumenthal, James A, Babyak, Michael A, Hoffman, Benson M, Doraiswamy, P Murali, Waugh, Robert, Hinderliter, Alan, and Sherwood, Andrew
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- 2007
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7. Meta-analysis of psychological interventions for chronic low back pain.
- Author
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Hoffman BM, Papas RK, Chatkoff DK, and Kerns RD
- Abstract
The purpose of this meta-analysis of randomized controlled trials was to evaluate the efficacy of psychological interventions for adults with noncancerous chronic low back pain (CLBP). The authors updated and expanded upon prior meta-analyses by using broad definitions of CLBP and psychological intervention, a broad data search strategy, and state-of-the-art data analysis techniques. All relevant controlled clinical trials meeting the inclusion criteria were identified primarily through a computer-aided literature search. Two independent reviewers screened abstracts and articles for inclusion criteria and extracted relevant data. Cohen's d effect sizes were calculated by using a random effects model. Outcomes included pain intensity, emotional functioning, physical functioning (pain interference or pain-specific disability, health-related quality of life), participant ratings of global improvement, health care utilization, health care provider visits, pain medications, and employment/disability compensation status. A total of 205 effect sizes from 22 studies were pooled in 34 analyses. Positive effects of psychological interventions, contrasted with various control groups, were noted for pain intensity, pain-related interference, health-related quality of life, and depression. Cognitive-behavioral and self-regulatory treatments were specifically found to be efficacious. Multidisciplinary approaches that included a psychological component, when compared with active control conditions, were also noted to have positive short-term effects on pain interference and positive long-term effects on return to work. The results demonstrated positive effects of psychological interventions for CLBP. The rigor of the methods used, as well as the results that reflect mild to moderate heterogeneity and minimal publication bias, suggest confidence in the conclusions of this review. Copyright © 2006 by the American Psychological Association, Inc. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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8. Screening for distress in cancer patients: the NCCN rapid-screening measure [corrected] [published erratum appears in PSYCHO ONCOL 2004 Nov;13(11):831].
- Author
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Hoffman BM, Zevon MA, D'Arrigo MC, and Cecchini TB
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- 2004
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9. Functional solitare- and trans-hybrids, the synthesis, characterization, electrochemistry and reactivity of porphyrazine/phthalocyanine hybrids bearing nitro and amino functionality
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Brian M. Hoffman, Mehmet Kandaz, Sarah L. J. Michel, Kandaz, M, Michel, SLJ, Hoffman, BM, Sakarya Üniversitesi/Fen-Edebiyat Fakültesi/Kimya Bölümü, and Kandaz, Mehmet
- Subjects
Chemistry ,General Chemistry ,Isoindoline ,Porphyrazine ,Electrochemistry ,chemistry.chemical_compound ,Polymer chemistry ,Nitro ,Proton NMR ,Phthalocyanine ,Organic chemistry ,Amine gas treating ,Reactivity (chemistry) - Abstract
We report here for the first time a new and improved approach to the complete synthesis and characterization of the unsymmetrical metallo- and metal-free phthalocyanine/porphyrazine (Pz/Pc) hybrids bearing peripheral nitro or amine functionality, H 2[ Pz (n- Pr )6( BzNO 2)] or H2[ Pz (n- Pr )4( BzNO 2)2], where Bz = benzo , n-Pr = n-propyl, fused on the one or two benzenoid ring which form from the reaction of two different precursors, 3,4-bis-(n-propyl)-pyroline-2,5-diimine and 6/7-nitro-1,3,3-tricholoro isoindoline, with the base-catalyzed direct condensation method. The direct condensation method used in this study enable us to skip magnesium porphyrazine ( MgPz ) stage and limits the formation of undesired hybrid compounds when compared with cross-condensation method. Centrally metallated solitare- and trans- Pz/Pc hybrids, M [ Pz (n- Pr )6( BzNO 2)] or M [ Pz (n- Pr )4( BzNO 2)2]( M = Zn (II) or Mn (II)), synthesized in this study are somewhat more soluble than the free ones. Metallo Pz/Pc hybrids were prepared by treatment of free-soitare and trans hybrids with the appropriate metal salts in anhydrous solvent mixtures. We observed that the solubility of solitare- and/or trans- Pz/Pc hybrids increases after nitro-substituted Pz/Pc hybrids are reduced to amine substituted ones. The reactivity of the NH2 group of the solitare- Zn [ Pz ( n - Pr )6( BzNH 2)] was tested by the condensation with ferrocenecarboxyaldehyde resulting in the formation of the ferrocene-substituted hybrid. The newly synthesized compounds have been characterized by elemental analaysis, FT IR, 1H NMR, UV-vis and MS spectroscopy. Electrochemical measurements of the complexes characterized in this study showed that the attachment of NO 2 and NH 2 moieties at the periphery makes a monitorable effect on redox properties of the macrocycle and metal center.
- Published
- 2003
10. Correction to "Terminal Hydride Complex of High-Spin Mn".
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Drena A, Fraker A, Thompson NB, Doan PE, Hoffman BM, and McSkimming A
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- 2024
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11. Role of ammonia-lyases in the synthesis of the dithiomethylamine ligand during [FeFe]-hydrogenase maturation.
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Pagnier A, Balci B, Shepard EM, Yang H, Drena A, Holliday GL, Hoffman BM, Broderick WE, and Broderick JB
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- Ammonia-Lyases metabolism, Ammonia-Lyases genetics, Ligands, Bacterial Proteins metabolism, Bacterial Proteins genetics, Electron Spin Resonance Spectroscopy, Operon, Methylamines metabolism, Hydrogenase metabolism, Hydrogenase genetics, Iron-Sulfur Proteins metabolism, Iron-Sulfur Proteins genetics
- Abstract
The generation of an active [FeFe]-hydrogenase requires the synthesis of a complex metal center, the H-cluster, by three dedicated maturases: the radical S-adenosyl-l-methionine (SAM) enzymes HydE and HydG, and the GTPase HydF. A key step of [FeFe]-hydrogenase maturation is the synthesis of the dithiomethylamine (DTMA) bridging ligand, a process recently shown to involve the aminomethyl-lipoyl-H-protein from the glycine cleavage system, whose methylamine group originates from serine and ammonium. Here we use functional assays together with electron paramagnetic resonance and electron-nuclear double resonance spectroscopies to show that serine or aspartate together with their respective ammonia-lyase enzymes can provide the nitrogen for DTMA biosynthesis during in vitro [FeFe]-hydrogenase maturation. We also report bioinformatic analysis of the hyd operon, revealing a strong association with genes encoding ammonia-lyases, suggesting important biochemical and metabolic connections. Together, our results provide evidence that ammonia-lyases play an important role in [FeFe]-hydrogenase maturation by delivering the ammonium required for dithiomethylamine ligand synthesis., Competing Interests: Conflicts of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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12. Terminal Hydride Complex of High-Spin Mn.
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Drena A, Fraker A, Thompson NB, Doan PE, Hoffman BM, and McSkimming A
- Abstract
The iron-molybdenum cofactor of nitrogenase (FeMoco) catalyzes fixation of N
2 via Fe hydride intermediates. Our understanding of these species has relied heavily on the characterization of well-defined 3d metal hydride complexes, which serve as putative spectroscopic models. Although the Fe ions in FeMoco, a weak-field cluster, are expected to adopt locally high-spin Fe2+/3+ configurations, synthetically accessible hydride complexes featuring d5 or d6 electron counts are almost exclusively low-spin. We report herein the isolation of a terminal hydride complex of four-coordinate, high-spin (d5 ; S = 5/2) Mn2+ . Electron paramagnetic resonance and electron-nuclear double resonance studies reveal an unusually large degree of spin density on the hydrido ligand. In light of the isoelectronic relationship between Mn2+ and Fe3+ , our results are expected to inform our understanding of the valence electronic structures of reactive hydride intermediates derived from FeMoco.- Published
- 2024
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13. Impact of N -Glycosylation on Protein Structure and Dynamics Linked to Enzymatic C-H Activation in the M. oryzae Lipoxygenase.
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Whittington C, Sharma A, Hill SG, Iavarone AT, Hoffman BM, and Offenbacher AR
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- Catalytic Domain, Enzyme Activation, Glycosylation, Kinetics, Models, Molecular, Polysaccharides metabolism, Polysaccharides chemistry, Protein Conformation, Protein Processing, Post-Translational, Substrate Specificity, Fungal Proteins metabolism, Fungal Proteins chemistry, Fungal Proteins genetics, Lipoxygenase metabolism, Lipoxygenase chemistry, Lipoxygenase genetics
- Abstract
Lipoxygenases (LOXs) from pathogenic fungi are potential therapeutic targets for defense against plant and select human diseases. In contrast to the canonical LOXs in plants and animals, fungal LOXs are unique in having appended N -linked glycans. Such important post-translational modifications (PTMs) endow proteins with altered structure, stability, and/or function. In this study, we present the structural and functional outcomes of removing or altering these surface carbohydrates on the LOX from the devastating rice blast fungus, M. oryzae , Mo LOX. Alteration of the PTMs did notinfluence the active site enzyme-substrate ground state structures as visualized by electron-nuclear double resonance (ENDOR) spectroscopy. However, removal of the eight N -linked glycans by asparagine-to-glutamine mutagenesis nonetheless led to a change in substrate selectivity and an elevated activation energy for the reaction with substrate linoleic acid, as determined by kinetic measurements. Comparative hydrogen-deuterium exchange mass spectrometry (HDX-MS) analysis of wild-type and Asn-to-Gln Mo LOX variants revealed a regionally defined impact on the dynamics of the arched helix that covers the active site. Guided by these HDX results, a single glycan sequon knockout was generated at position 72, and its comparative substrate selectivity from kinetics nearly matched that of the Asn-to-Gln variant. The cumulative data from model glyco-enzyme Mo LOX showcase how the presence, alteration, or removal of even a single N -linked glycan can influence the structural integrity and dynamics of the protein that are linked to an enzyme's catalytic proficiency, while indicating that extensive glycosylation protects the enzyme during pathogenesis by protecting it from protease degradation.
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- 2024
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14. Initial Steps in Methanobactin Biosynthesis: Substrate Binding by the Mixed-Valent Diiron Enzyme MbnBC.
- Author
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Jodts RJ, Ho MB, Reyes RM, Park YJ, Doan PE, Rosenzweig AC, and Hoffman BM
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- Oxidation-Reduction, Crystallography, X-Ray, Bacterial Proteins metabolism, Bacterial Proteins chemistry, Electron Spin Resonance Spectroscopy, Oxygenases metabolism, Oxygenases chemistry, Catalytic Domain, Substrate Specificity, Models, Molecular, Iron metabolism, Iron chemistry, Imidazoles metabolism, Imidazoles chemistry, Oligopeptides metabolism, Oligopeptides chemistry, Oligopeptides biosynthesis
- Abstract
The MbnBC enzyme complex converts cysteine residues in a peptide substrate, MbnA, to oxazolone/thioamide groups during the biosynthesis of copper chelator methanobactin (Mbn). MbnBC belongs to the mixed-valent diiron oxygenase (MVDO) family, of which members use an Fe(II)Fe(III) cofactor to react with dioxygen for substrate modification. Several crystal structures of the inactive Fe(III)Fe(III) form of MbnBC alone and in complex with MbnA have been reported, but a mechanistic understanding requires determination of the oxidation states of the crystallographically observed Fe ions in the catalytically active Fe(II)Fe(III) state, along with the site of MbnA binding. Here, we have used electron nuclear double resonance (ENDOR) spectroscopy to determine such structural and electronic properties of the active site, in particular, the mode of substrate binding to the MV state, information not accessible by X-ray crystallography alone. The oxidation states of the two Fe ions were determined by
15 N ENDOR analysis. The presence and locations of both bridging and terminal exogenous solvent ligands were determined using1 H and2 H ENDOR. In addition,2 H ENDOR using an isotopically labeled MbnA substrate indicates that MbnA binds to the Fe(III) ion of the cluster via the sulfur atom of its N -terminal modifiable cysteine residue, with displacement of a coordinated solvent ligand as shown by complementary1 H ENDOR. These results, which underscore the utility of ENDOR in studying MVDOs, provide a molecular picture of the initial steps in Mbn biosynthesis.- Published
- 2024
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15. The Active-Site [4Fe-4S] Cluster in the Isoprenoid Biosynthesis Enzyme IspH Adopts Unexpected Redox States during Ligand Binding and Catalysis.
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Ghebreamlak S, Stoian SA, Lees NS, Cronin B, Smith F, Ross MO, Telser J, Hoffman BM, and Duin EC
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- Catalytic Domain, Ligands, Oxidation-Reduction, Electron Spin Resonance Spectroscopy, Catalysis, Iron-Sulfur Proteins chemistry, Organophosphorus Compounds, Hemiterpenes
- Abstract
( E )-4-Hydroxy-3-methylbut-2-enyl diphosphate reductase, or IspH (formerly known as LytB), catalyzes the terminal step of the bacterial methylerythritol phosphate (MEP) pathway for isoprene synthesis. This step converts ( E )-4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) into one of two possible isomeric products, either isopentenyl diphosphate (IPP) or dimethylallyl diphosphate (DMAPP). This reaction involves the removal of the C4 hydroxyl group of HMBPP and addition of two electrons. IspH contains a [4Fe-4S] cluster in its active site, and multiple cluster-based paramagnetic species of uncertain redox and ligation states can be detected after incubation with reductant, addition of a ligand, or during catalysis. To characterize the clusters in these species,
57 Fe-labeled samples of IspH were prepared and studied by electron paramagnetic resonance (EPR),57 Fe electron-nuclear double resonance (ENDOR), and Mössbauer spectroscopies. Notably, this ENDOR study provides a rarely reported, complete determination of the57 Fe hyperfine tensors for all four Fe ions in a [4Fe-4S] cluster. The resting state of the enzyme ( Ox ) has a diamagnetic [4Fe-4S]2+ cluster. Reduction generates [4Fe-4S]+ ( Red ) with both S = 1/2 and S = 3/2 spin ground states. When the reduced enzyme is incubated with substrate, a transient paramagnetic reaction intermediate is detected ( Int ) which is thought to contain a cluster-bound substrate-derived species. The EPR properties of Int are indicative of a 3+ iron-sulfur cluster oxidation state, and the Mössbauer spectra presented here confirm this. Incubation of reduced enzyme with the product IPP induced yet another paramagnetic [4Fe-4S]+ species ( Red+P ) with S = 1/2. However, the g -tensor of this state is commonly associated with a 3+ oxidation state, while Mössbauer parameters show features typical for 2+ clusters. Implications of these complicated results are discussed.- Published
- 2024
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16. ENDOR Spectroscopy Reveals the "Free" 5'-Deoxyadenosyl Radical in a Radical SAM Enzyme Active Site Actually is Chaperoned by Close Interaction with the Methionine-Bound [4Fe-4S] 2+ Cluster.
- Author
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Yang H, Ho MB, Lundahl MN, Mosquera MA, Broderick WE, Broderick JB, and Hoffman BM
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- Methionine, Electron Spin Resonance Spectroscopy methods, Catalytic Domain, Racemethionine, Free Radicals chemistry, S-Adenosylmethionine metabolism, Iron-Sulfur Proteins chemistry
- Abstract
1/2 H and13 C hyperfine coupling constants to 5'-deoxyadenosyl (5'-dAdo•) radical trapped within the active site of the radical S -adenosyl-l-methionine (SAM) enzyme, pyruvate formate lyase-activating enzyme (PFL-AE), both in the absence of substrate and the presence of a reactive peptide-model of the PFL substrate, are completely characteristic of a classical organic free radical whose unpaired electron is localized in the 2pπ orbital of the sp2 C5'-carbon ( J. Am. Chem. Soc. 2019, 141, 12139-12146). However, prior electron-nuclear double resonance (ENDOR) measurements had indicated that this 5'-dAdo• free radical is never truly "free": tight van der Waals contact with its target partners and active-site residues guide it in carrying out the exquisitely precise, regioselective reactions that are hallmarks of RS enzymes. Here, our understanding of how the active site chaperones 5'-dAdo• is extended through the finding that this apparently unexceptional organic free radical has an anomalous g-tensor and exhibits significant57 Fe,13 C,15 N, and2 H hyperfine couplings to the adjacent, isotopically labeled, methionine-bound [4Fe-4S]2+ cluster cogenerated with 5'-dAdo• during homolytic cleavage of cluster-bound SAM. The origin of the57 Fe couplings through nonbonded radical-cluster contact is illuminated by a formal exchange-coupling model and broken symmetry-density functional theory computations. Incorporation of ENDOR-derived distances from C5'(dAdo•) to labeled-methionine as structural constraints yields a model for active-site positioning of 5'-dAdo• with a short, nonbonded C5'-Fe distance (∼3 Å). This distance involves substantial motion of 5'-dAdo• toward the unique Fe of the [4Fe-4S]2+ cluster upon S-C(5') bond-cleavage, plausibly an initial step toward formation of the Fe-C5' bond of the organometallic complex, Ω, the central intermediate in catalysis by radical-SAM enzymes.- Published
- 2024
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17. Product analog binding identifies the copper active site of particulate methane monooxygenase.
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Tucci FJ, Jodts RJ, Hoffman BM, and Rosenzweig AC
- Abstract
Nature's primary methane-oxidizing enzyme, the membrane-bound particulate methane monooxygenase (pMMO), catalyzes the oxidation of methane to methanol. pMMO activity requires copper, and decades of structural and spectroscopic studies have sought to identify the active site among three candidates: the Cu
B , CuC , and CuD sites. Challenges associated with the isolation of active pMMO have hindered progress toward locating its catalytic center. However, reconstituting pMMO into native lipid nanodiscs stabilizes its structure and recovers its activity. Here, these active samples were incubated with 2,2,2,-trifluoroethanol (TFE), a product analog that serves as a readily visualized active-site probe. Interactions of TFE with the CuD site were observed by both pulsed ENDOR spectroscopy and cryoEM, implicating CuD and the surrounding hydrophobic pocket as the likely site of methane oxidation. Use of these orthogonal techniques on parallel samples is a powerful approach that can circumvent difficulties in interpreting metalloenzyme cryoEM maps.- Published
- 2023
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18. Pyruvate formate-lyase activating enzyme: The catalytically active 5'-deoxyadenosyl radical caught in the act of H-atom abstraction.
- Author
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Lundahl MN, Yang H, Broderick WE, Hoffman BM, and Broderick JB
- Subjects
- Acetyltransferases metabolism, Methionine, Electron Spin Resonance Spectroscopy, Peptides metabolism, S-Adenosylmethionine chemistry, Iron-Sulfur Proteins metabolism
- Abstract
Enzymes of the radical S -adenosyl-l-methionine (radical SAM, RS) superfamily, the largest in nature, catalyze remarkably diverse reactions initiated by H-atom abstraction. Glycyl radical enzyme activating enzymes (GRE-AEs) are a growing class of RS enzymes that generate the catalytically essential glycyl radical of GREs, which in turn catalyze essential reactions in anaerobic metabolism. Here, we probe the reaction of the GRE-AE pyruvate formate-lyase activating enzyme (PFL-AE) with the peptide substrate RVSG
734 YAV, which mimics the site of glycyl radical formation on the native substrate, pyruvate formate-lyase. Time-resolved freeze-quench electron paramagnetic resonance spectroscopy shows that at short mixing times reduced PFL-AE + SAM reacts with RVSG734 YAV to form the central organometallic intermediate, Ω, in which the adenosyl 5'C is covalently bound to the unique iron of the [4Fe-4S] cluster. Freeze-trapping the reaction at longer times reveals the formation of the peptide G734 • glycyl radical product. Of central importance, freeze-quenching at intermediate times reveals that the conversion of Ω to peptide glycyl radical is not concerted. Instead, homolysis of the Ω Fe-C5' bond generates the nominally "free" 5'-dAdo• radical, which is captured here by freeze-trapping. During cryoannealing at 77 K, the 5'-dAdo• directly abstracts an H-atom from the peptide to generate the G734 • peptide radical trapped in the PFL-AE active site. These observations reveal the 5'-dAdo• radical to be a well-defined intermediate, caught in the act of substrate H-atom abstraction, providing new insights into the mechanistic steps of radical initiation by RS enzymes.- Published
- 2023
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19. A conformational equilibrium in the nitrogenase MoFe protein with an α-V70I amino acid substitution illuminates the mechanism of H 2 formation.
- Author
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Lukoyanov DA, Yang ZY, Shisler K, Peters JW, Raugei S, Dean DR, Seefeldt LC, and Hoffman BM
- Subjects
- Amino Acid Substitution, Oxidation-Reduction, Molecular Conformation, Amino Acids, Protons, Nitrogenase chemistry, Nitrogenase metabolism, Molybdoferredoxin chemistry, Molybdoferredoxin metabolism
- Abstract
Study of α-V70I-substituted nitrogenase MoFe protein identified Fe6 of FeMo-cofactor (Fe
7 S9 MoC-homocitrate) as a critical N2 binding/reduction site. Freeze-trapping this enzyme during Ar turnover captured the key catalytic intermediate in high occupancy, denoted E4 (4H), which has accumulated 4[e- /H+ ] as two bridging hydrides, Fe2-H-Fe6 and Fe3-H-Fe7, and protons bound to two sulfurs. E4 (4H) is poised to bind/reduce N2 as driven by mechanistically-coupled H2 reductive-elimination of the hydrides. This process must compete with ongoing hydride protonation (HP), which releases H2 as the enzyme relaxes to state E2 (2H), containing 2[e- /H+ ] as a hydride and sulfur-bound proton; accumulation of E4 (4H) in α-V70I is enhanced by HP suppression. EPR and95 Mo ENDOR spectroscopies now show that resting-state α-V70I enzyme exists in two conformational states, both in solution and as crystallized, one with wild type (WT)-like FeMo-co and one with perturbed FeMo-co. These reflect two conformations of the Ile residue, as visualized in a reanalysis of the X-ray diffraction data of α-V70I and confirmed by computations. EPR measurements show delivery of 2[e- /H+ ] to the E0 state of the WT MoFe protein and to both α-V70I conformations generating E2 (2H) that contains the Fe3-H-Fe7 bridging hydride; accumulation of another 2[e- /H+ ] generates E4 (4H) with Fe2-H-Fe6 as the second hydride. E4 (4H) in WT enzyme and a minority α-V70I E4 (4H) conformation as visualized by QM/MM computations relax to resting-state through two HP steps that reverse the formation process: HP of Fe2-H-Fe6 followed by slower HP of Fe3-H-Fe7, which leads to transient accumulation of E2 (2H) containing Fe3-H-Fe7. In the dominant α-V70I E4 (4H) conformation, HP of Fe2-H-Fe6 is passively suppressed by the positioning of the Ile sidechain; slow HP of Fe3-H-Fe7 occurs first and the resulting E2 (2H) contains Fe2-H-Fe6. It is this HP suppression in E4 (4H) that enables α-V70I MoFe to accumulate E4 (4H) in high occupancy. In addition, HP suppression in α-V70I E4 (4H) kinetically unmasks hydride reductive-elimination without N2 -binding, a process that is precluded in WT enzyme.- Published
- 2023
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20. Enzymatic N 2 activation: general discussion.
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Abi Ghaida F, Brinkert K, Chen P, DeBeer S, Hoffman BM, Holland PL, Laxmi S, MacFarlane D, Peters JC, Peters JW, Pickett CJ, Seefeldt LC, Shylin SI, Stephens IEL, Vincent KA, Wang Q, and Westhead O
- Published
- 2023
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21. Characterization of Methyl- and Acetyl-Ni Intermediates in Acetyl CoA Synthase Formed during Anaerobic CO 2 and CO Fixation.
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Can M, Abernathy MJ, Wiley S, Griffith C, James CD, Xiong J, Guo Y, Hoffman BM, Ragsdale SW, and Sarangi R
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- Acetyl Coenzyme A chemistry, Carbon Dioxide metabolism, Anaerobiosis, Nitric Oxide Synthase metabolism, Aldehyde Oxidoreductases metabolism, Carbon Monoxide chemistry, Nickel chemistry, Iron-Sulfur Proteins chemistry
- Abstract
The Wood-Ljungdahl Pathway is a unique biological mechanism of carbon dioxide and carbon monoxide fixation proposed to operate through nickel-based organometallic intermediates. The most unusual steps in this metabolic cycle involve a complex of two distinct nickel-iron-sulfur proteins: CO dehydrogenase and acetyl-CoA synthase (CODH/ACS). Here, we describe the nickel-methyl and nickel-acetyl intermediates in ACS completing the characterization of all its proposed organometallic intermediates. A single nickel site (Ni
p ) within the A cluster of ACS undergoes major geometric and redox changes as it transits the planar Nip , tetrahedral Nip -CO and planar Nip -Me and Nip -Ac intermediates. We propose that the Nip intermediates equilibrate among different redox states, driven by an electrochemical-chemical (EC) coupling process, and that geometric changes in the A-cluster linked to large protein conformational changes control entry of CO and the methyl group.- Published
- 2023
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22. Computational Description of Alkylated Iron-Sulfur Organometallic Clusters.
- Author
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Jodts RJ, Wittkop M, Ho MB, Broderick WE, Broderick JB, Hoffman BM, and Mosquera MA
- Abstract
The radical S -adenosyl methionine (SAM) enzyme superfamily has widespread roles in hydrogen atom abstraction reactions of crucial biological importance. In these enzymes, reductive cleavage of SAM bound to a [4Fe-4S]
1+ cluster generates the 5'-deoxyadenosyl radical (5'-dAdo•) which ultimately abstracts an H atom from the substrate. However, overwhelming experimental evidence has surprisingly revealed an obligatory organometallic intermediate Ω exhibiting an Fe-C5'-adenosyl bond, whose properties are the target of this theoretical investigation. We report a readily applied, two-configuration version of broken symmetry DFT, denoted 2C-DFT, designed to allow the accurate description of the hyperfine coupling constants and g-tensors of an alkyl group bound to a multimetallic iron-sulfur cluster. This approach has been validated by the excellent agreement of its results both with those of multiconfigurational complete active space self-consistent field computations for a series of model complexes and with the results from electron nuclear double-resonance/electron paramagnetic resonance spectroscopic studies for the crystallographically characterized complex, M-CH3 , a [4Fe-4S] cluster with a Fe-CH3 bond. The likewise excellent agreement between spectroscopic results and 2C-DFT computations for Ω confirm its identity as an organometallic complex with a bond between an Fe of the [4Fe-4S] cluster and C5' of the deoxyadenosyl moiety, as first proposed.- Published
- 2023
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23. Mechanism of Radical Initiation in the Radical SAM Enzyme Superfamily.
- Author
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Hoffman BM, Broderick WE, and Broderick JB
- Subjects
- S-Adenosylmethionine chemistry, Iron-Sulfur Proteins genetics, Iron-Sulfur Proteins chemistry
- Abstract
Radical S -adenosylmethionine (SAM) enzymes use a site-differentiated [4Fe-4S] cluster and SAM to initiate radical reactions through liberation of the 5'-deoxyadenosyl (5'-dAdo•) radical. They form the largest enzyme superfamily, with more than 700,000 unique sequences currently, and their numbers continue to grow as a result of ongoing bioinformatics efforts. The range of extremely diverse, highly regio- and stereo-specific reactions known to be catalyzed by radical SAM superfamily members is remarkable. The common mechanism of radical initiation in the radical SAM superfamily is the focus of this review. Most surprising is the presence of an organometallic intermediate, Ω, exhibiting an Fe-C5'-adenosyl bond. Regioselective reductive cleavage of the SAM S-C5' bond produces 5'-dAdo• to form Ω, with the regioselectivity originating in the Jahn-Teller effect. Ω liberates the free 5'-dAdo• as the catalytically active intermediate through homolysis of the Fe-C5' bond, in analogy to Co-C5' bond homolysis in B
12 , which was once viewed as biology's choice of radical generator.- Published
- 2023
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24. 13 C Electron Nuclear Double Resonance Spectroscopy-Guided Molecular Dynamics Computations Reveal the Structure of the Enzyme-Substrate Complex of an Active, N -Linked Glycosylated Lipoxygenase.
- Author
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Sharma A, Whittington C, Jabed M, Hill SG, Kostenko A, Yu T, Li P, Doan PE, Hoffman BM, and Offenbacher AR
- Subjects
- Animals, Electron Spin Resonance Spectroscopy, Hydrogen chemistry, Linoleic Acid chemistry, Lipoxygenase chemistry, Molecular Dynamics Simulation
- Abstract
Lipoxygenase (LOX) enzymes produce important cell-signaling mediators, yet attempts to capture and characterize LOX-substrate complexes by X-ray co-crystallography are commonly unsuccessful, requiring development of alternative structural methods. We previously reported the structure of the complex of soybean lipoxygenase, SLO, with substrate linoleic acid (LA), as visualized through the integration of
13 C/1 H electron nuclear double resonance (ENDOR) spectroscopy and molecular dynamics (MD) computations. However, this required substitution of the catalytic mononuclear, nonheme iron by the structurally faithful, yet inactive Mn2+ ion as a spin probe. Unlike canonical Fe-LOXs from plants and animals, LOXs from pathogenic fungi contain active mononuclear Mn2+ metallocenters. Here, we report the ground-state active-site structure of the native, fully glycosylated fungal LOX from rice blast pathogen Magnaporthe oryzae , Mo LOX complexed with LA, as obtained through the13 C/1 H ENDOR-guided MD approach. The catalytically important distance between the hydrogen donor, carbon-11 (C11), and the acceptor, Mn-bound oxygen, (donor-acceptor distance, DAD) for the Mo LOX-LA complex derived in this fashion is 3.4 ± 0.1 Å. The difference of the Mo LOX-LA DAD from that of the SLO-LA complex, 3.1 ± 0.1 Å, is functionally important, although is only 0.3 Å, despite the Mo LOX complex having a Mn-C11 distance of 5.4 Å and a "carboxylate-out" substrate-binding orientation, whereas the SLO complex has a 4.9 Å Mn-C11 distance and a "carboxylate-in" substrate orientation. The results provide structural insights into reactivity differences across the LOX family, give a foundation for guiding development of Mo LOX inhibitors, and highlight the robustness of the ENDOR-guided MD approach to describe LOX-substrate structures.- Published
- 2023
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25. Connecting the geometric and electronic structures of the nitrogenase iron-molybdenum cofactor through site-selective 57 Fe labelling.
- Author
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Badding ED, Srisantitham S, Lukoyanov DA, Hoffman BM, and Suess DLM
- Subjects
- Oxidation-Reduction, Electron Spin Resonance Spectroscopy, Catalysis, Nitrogenase chemistry, Molybdoferredoxin chemistry
- Abstract
Understanding the chemical bonding in the catalytic cofactor of the Mo nitrogenase (FeMo-co) is foundational for building a mechanistic picture of biological nitrogen fixation. A persistent obstacle towards this goal has been that the
57 Fe-based spectroscopic data-although rich with information-combines responses from all seven Fe sites, and it has therefore not been possible to map individual spectroscopic responses to specific sites in the three-dimensional structure. Here we have addressed this challenge by incorporating57 Fe into a single site of FeMo-co. Spectroscopic analysis of the resting state informed on the local electronic structure of the terminal Fe1 site, including its oxidation state and spin orientation, and, in turn, on the spin-coupling scheme for the entire cluster. The oxidized resting state and the first intermediate in nitrogen fixation were also characterized, and comparisons with the resting state provided molecular-level insights into the redox chemistry of FeMo-co., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2023
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26. The Fe Protein Cycle Associated with Nitrogenase Catalysis Requires the Hydrolysis of Two ATP for Each Single Electron Transfer Event.
- Author
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Yang ZY, Badalyan A, Hoffman BM, Dean DR, and Seefeldt LC
- Subjects
- Electrons, Hydrolysis, Adenosine Triphosphate chemistry, Oxidation-Reduction, Iron metabolism, Catalysis, Electron Spin Resonance Spectroscopy, Nitrogenase chemistry, Molybdoferredoxin chemistry
- Abstract
A central feature of the current understanding of dinitrogen (N
2 ) reduction by the enzyme nitrogenase is the proposed coupling of the hydrolysis of two ATP, forming two ADP and two Pi, to the transfer of one electron from the Fe protein component to the MoFe protein component, where substrates are reduced. A redox-active [4Fe-4S] cluster associated with the Fe protein is the agent of electron delivery, and it is well known to have a capacity to cycle between a one-electron-reduced [4Fe-4S]1+ state and an oxidized [4Fe-4S]2+ state. Recently, however, it has been shown that certain reducing agents can be used to further reduce the Fe protein [4Fe-4S] cluster to a super-reduced, all-ferrous [4Fe-4S]0 state that can be either diamagnetic ( S = 0) or paramagnetic ( S = 4). It has been proposed that the super-reduced state might fundamentally alter the existing model for nitrogenase energy utilization by the transfer of two electrons per Fe protein cycle linked to hydrolysis of only two ATP molecules. Here, we measure the number of ATP consumed for each electron transfer under steady-state catalysis while the Fe protein cluster is in the [4Fe-4S]1+ state and when it is in the [4Fe-4S]0 state. Both oxidation states of the Fe protein are found to operate by hydrolyzing two ATP for each single-electron transfer event. Thus, regardless of its initial redox state, the Fe protein transfers only one electron at a time to the MoFe protein in a process that requires the hydrolysis of two ATP.- Published
- 2023
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27. Feeding after spawning and energy balance at spawning are associated with repeat spawning interval in steelhead trout.
- Author
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Jenkins LE, Medeiros LR, Graham ND, Hoffman BM, Cervantes DL, Hatch DR, Nagler JJ, and Pierce AL
- Subjects
- Animals, Female, Growth Hormone, Oncorhynchus mykiss
- Abstract
Consecutive and skip repeat spawning (1- or ≥2-year spawning interval) life histories commonly occur in seasonally breeding iteroparous fishes. Spawning interval variation is driven by energetic status and impacts fisheries management. In salmonids, energetic status (either absolute level of energy reserves or the rate of change of energy reserves, i.e., energy balance) is thought to determine reproductive trajectory during a critical period ∼1 year prior to initial spawning. However, information on repeat spawners is lacking. To examine the timing and the aspects of energetic status that regulate repeat spawning interval, female steelhead trout (Oncorhynchus mykiss) were fasted for 10 weeks after spawning and then fed ad libitum and compared to ad libitum fed controls. Plasma growth hormone (GH) and insulin-like growth factor-I (IGF-I) levels were measured to assess long-term energy balance. Plasma estradiol levels showed that some fish in both groups initiated a consecutive spawning cycle. In fasted fish, GH was lower at spawning in consecutive versus skip spawners. In consecutive spawners, GH was higher at spawning in fed versus fasted fish. These results suggest that fish with a less negative energy balance at spawning initiated reproductive development in the absence of feeding, but that feeding during the post-spawning period enabled initiation of reproduction in some fish with a more negative energy balance at spawning. Thus, both energy balance at spawning and feeding after spawning regulated reproductive schedules. These results show that the critical period model of salmonid maturation applies to regulation of repeat spawning, and that the reproductive decision window extends into the first 10 weeks after spawning., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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28. Radical SAM enzymes: Nature's choice for radical reactions.
- Author
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Broderick JB, Broderick WE, and Hoffman BM
- Subjects
- Enzymes chemistry, Enzymes metabolism, S-Adenosylmethionine chemistry, S-Adenosylmethionine metabolism, Iron-Sulfur Proteins metabolism
- Abstract
Enzymes that use a [4Fe-4S]
1+ cluster plus S-adenosyl-l-methionine (SAM) to initiate radical reactions (radical SAM) form the largest enzyme superfamily, with over half a million members across the tree of life. This review summarizes recent work revealing the radical SAM reaction pathway, which ultimately liberates the 5'-deoxyadenosyl (5'-dAdo•) radical to perform extremely diverse, highly regio- and stereo-specific, transformations. Most surprising was the discovery of an organometallic intermediate Ω exhibiting an Fe-C5'-adenosyl bond. Ω liberates 5'-dAdo• through homolysis of the Fe-C5' bond, in analogy to Co-C5' bond homolysis in B12 , previously viewed as biology's paradigmatic radical generator. The 5'-dAdo• has been trapped and characterized in radical SAM enzymes via a recently discovered photoreactivity of the [4Fe-4S]+ /SAM complex, and has been confirmed as a catalytically active intermediate in enzyme catalysis. The regioselective SAM S-C bond cleavage to produce 5'-dAdo• originates in the Jahn-Teller effect. The simplicity of SAM as a radical precursor, and the exquisite control of 5'-dAdo• reactivity in radical SAM enzymes, may be why radical SAM enzymes pervade the tree of life, while B12 enzymes are only a few., (© 2022 Federation of European Biochemical Societies.)- Published
- 2023
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29. Effects of Desiccation and Freezing on Microbial Ionizing Radiation Survivability: Considerations for Mars Sample Return.
- Author
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Horne WH, Volpe RP, Korza G, DePratti S, Conze IH, Shuryak I, Grebenc T, Matrosova VY, Gaidamakova EK, Tkavc R, Sharma A, Gostinčar C, Gunde-Cimerman N, Hoffman BM, Setlow P, and Daly MJ
- Subjects
- Humans, Desiccation, Freezing, Saccharomyces cerevisiae, Spores, Bacterial radiation effects, Radiation, Ionizing, Polyploidy, Extraterrestrial Environment, Mars
- Abstract
Increasingly, national space agencies are expanding their goals to include Mars exploration with sample return. To better protect Earth and its biosphere from potential extraterrestrial sources of contamination, as set forth in the Outer Space Treaty of 1967, international efforts to develop planetary protection measures strive to understand the danger of cross-contamination processes in Mars sample return missions. We aim to better understand the impact of the martian surface on microbial dormancy and survivability. Radiation resistance of microbes is a key parameter in considering survivability of microbes over geologic times on the frigid, arid surface of Mars that is bombarded by solar and galactic cosmic radiation. We tested the influence of desiccation and freezing on the ionizing radiation survival of six model microorganisms: vegetative cells of two bacteria ( Deinococcus radiodurans, Escherichia coli ) and a strain of budding yeast ( Saccharomyces cerevisiae ); and vegetative cells and endospores of three Bacillus bacteria ( B. subtilis, B. megaterium, B. thuringiensis ). Desiccation and freezing greatly increased radiation survival of vegetative polyploid microorganisms when applied separately, and when combined, desiccation and freezing increased radiation survival even more so. Thus, the radiation survival threshold of polyploid D. radiodurans cells can be extended from the already high value of 25 kGy in liquid culture to an astonishing 140 kGy when the cells are both desiccated and frozen. However, such synergistic radioprotective effects of desiccation and freezing were not observed in monogenomic or digenomic Bacillus cells and endospores, which are generally sterilized by 12 kGy. This difference is associated with a critical requirement for survivability under radiation, that is, repair of genome damage caused by radiation. Deinococcus radiodurans and S. cerevisiae accumulate similarly high levels of the Mn antioxidants that are required for extreme radiation resistance, as do endospores, though they greatly exceed spores in radioresistance because they contain multiple identical genome copies, which in D. radiodurans are joined by persistent Holliday junctions. We estimate ionizing radiation survival limits of polyploid DNA-based life-forms to be hundreds of millions of years of background radiation while buried in the martian subsurface. Our findings imply that forward contamination of Mars will essentially be permanent, and backward contamination is a possibility if life ever existed on Mars.
- Published
- 2022
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30. 13 C ENDOR Characterization of the Central Carbon within the Nitrogenase Catalytic Cofactor Indicates That the CFe 6 Core Is a Stabilizing "Heart of Steel".
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Lukoyanov DA, Yang ZY, Pérez-González A, Raugei S, Dean DR, Seefeldt LC, and Hoffman BM
- Subjects
- Carbon metabolism, Catalysis, Electron Spin Resonance Spectroscopy methods, Oxidation-Reduction, Steel, Molybdoferredoxin chemistry, Nitrogenase chemistry
- Abstract
Substrates and inhibitors of Mo-dependent nitrogenase bind and react at Fe ions of the active-site FeMo-cofactor [7Fe-9S-C-Mo-homocitrate] contained within the MoFe protein α-subunit. The cofactor contains a CFe
6 core, a carbon centered within a trigonal prism of six Fe, whose role in catalysis is unknown. Targeted13 C labeling of the carbon enables electron-nuclear double resonance (ENDOR) spectroscopy to sensitively monitor the electronic properties of the Fe-C bonds and the spin-coupling scheme adopted by the FeMo-cofactor metal ions. This report compares13 CFe6 ENDOR measurements for (i) the wild-type protein resting state ( E0 ; α-Val70 ) to those of (ii) α-Ile70 , (iii) α-Ala70 -substituted proteins; (iv) crystallographically characterized CO-inhibited "hi-CO" state; (v) E4 (4H) Janus intermediate, activated for N2 binding/reduction by accumulation of 4[e- /H+ ]; (vi) E4 (2H)* state containing a doubly reduced FeMo-cofactor without Fe-bound substrates; and (vii) propargyl alcohol reduction intermediate having allyl alcohol bound as a ferracycle to FeMo-cofactor Fe6. All states examined, both S = 1/2 and 3/2 exhibited near-zero13 C isotropic hyperfine coupling constants,C a = [-1.3 ↔ +2.7] MHz. Density functional theory computations and natural bond orbital analysis of the Fe-C bonds show that this occurs because a (3 spin-up/3 spin-down) spin-exchange configuration of CFe6 Fe-ion spins produces cancellation of large spin-transfers to carbon in each Fe-C bond. Previous X-ray diffraction and DFT both indicate that trigonal-prismatic geometry around carbon is maintained with high precision in all these states. The persistent structure and Fe-C bonding of the CFe6 core indicate that it does not provide a functionally dynamic (hemilabile) "beating heart"─instead it acts as "a heart of steel", stabilizing the structure of the FeMo-cofactor-active site during nitrogenase catalysis.- Published
- 2022
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31. Characterization by ENDOR Spectroscopy of the Iron-Alkyl Bond in a Synthetic Counterpart of Organometallic Intermediates in Radical SAM Enzymes.
- Author
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Ho MB, Jodts RJ, Kim Y, McSkimming A, Suess DLM, and Hoffman BM
- Subjects
- Electron Spin Resonance Spectroscopy methods, Iron metabolism, Iron-Sulfur Proteins chemistry, S-Adenosylmethionine metabolism
- Abstract
Members of the radical S- adenosyl-l-methionine (SAM) enzyme superfamily initiate a broad spectrum of radical transformations through reductive cleavage of SAM by a [4Fe-4S]
1+ cluster it coordinates to generate the reactive 5'-deoxyadenosyl radical (5'-dAdo• ). However, 5'-dAdo• is not directly liberated for reaction and instead binds to the unique Fe of the cluster to create the catalytically competent S = 1/2 organometallic intermediate Ω. An alternative mode of reductive SAM cleavage, especially seen photochemically, instead liberates CH3 • , which forms the analogous S = 1/2 organometallic intermediate with an Fe-CH3 bond, ΩM . The presence of a covalent Fe-C bond in both structures was established by the ENDOR observation of13 C and1 H hyperfine couplings to the alkyl groups that show isotropic components indicative of Fe-C bond covalency. The synthetic [Fe4 S4 ]3+ -CH3 cluster, M-CH3 , is a crystallographically characterized analogue to ΩM that exhibits the same [Fe4 S4 ]3+ cluster state as Ω and ΩM , and thus an analysis of its spectroscopic properties─and comparison with those of Ω and ΩM ─can be grounded in its crystal structure. We report cryogenic (2 K) EPR and13 C/1/2 H ENDOR measurements on isotopically labeled M-CH3 . At low temperatures, the complex exhibits EPR spectra from two distinct conformers/subpopulations. ENDOR shows that at 2 K, one contains a static methyl, but in the other, the methyl undergoes rapid tunneling/hopping rotation about the Fe-CH3 bond. This generates an averaged hyperfine coupling tensor whose analysis requires an extended treatment of rotational averaging. The methyl group13 C/1/2 H hyperfine couplings are compared with the corresponding values for Ω and ΩM .- Published
- 2022
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32. Exercise and Escitalopram in the Treatment of Anxiety in Patients with Coronary Heart Disease: One Year Follow-Up of the UNWIND Randomized Clinical Trial.
- Author
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Blumenthal JA, Smith PJ, Jiang W, Hinderliter A, Watkins LL, Hoffman BM, Kraus WE, Mabe S, Liao L, Davidson J, and Sherwood A
- Abstract
Anxiety is common among patients with coronary heart disease (CHD) and is associated with a worse prognosis. UNWIND was a 12-week randomized clinical trial comparing exercise and escitalopram to placebo on measures of anxiety, depression, and CHD biomarkers. Primary results of the trial reported that treatment with escitalopram, but not exercise, was associated with significant reductions in anxiety and depression. At 1-year follow-up, participants completed the Hospital Anxiety-Depression Scale-Anxiety (HADS-A) along with the HADS-Depression (HADS-D), the Beck Depression Inventory-II (BDI-II), and the Godin Leisure Time Exercise survey to assess physical activity. Results showed that those patients randomized to escitalopram had lower scores on the HADS-A compared to those randomized to exercise ( P = 0.006) and had less depression compared to exercise on the HADS-D ( P = 0.004) and BDI-II ( P = 0.004). Participants randomized to exercise reported higher levels of physical activity at 1-year compared to those randomized to Placebo ( P = 0.039). However, despite reporting being more physically active, those randomized to exercise did not have less anxiety or depression compared to placebo controls. Escitalopram appears to be a safe and effective treatment for anxiety; exercise has many health benefits, but does not appear to be effective in treating anxiety.
- Published
- 2022
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33. Longer term benefits of exercise and escitalopram in the treatment of anxiety in patients with coronary heart disease: Six month follow-up of the UNWIND randomized clinical trial.
- Author
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Blumenthal JA, Smith PJ, Jiang W, Hinderliter A, Watkins LL, Hoffman BM, Kraus WE, Mabe S, Liao L, Davidson J, and Sherwood A
- Subjects
- Anxiety etiology, Escitalopram, Exercise, Follow-Up Studies, Humans, Selective Serotonin Reuptake Inhibitors therapeutic use, Citalopram therapeutic use, Coronary Disease complications, Coronary Disease drug therapy
- Abstract
Background: Anxiety is a common comorbidity in patients with coronary heart disease (CHD) and is associated with worse prognosis. However, effective treatment for anxiety in CHD patients is uncertain. The UNWIND randomized clinical trial showed that 12-week treatment of escitalopram was better than exercise training or placebo in reducing anxiety in anxious CHD patients. The longer-term benefits of treatment for anxiety are not known., Methods: Patients were randomized to 12 weeks of Escitalopram (up to 20 mg), Exercise (3 times/wk), or placebo pill. At the conclusion of treatment, participants were followed for 6-months to determine the persistence of benefit on the primary anxiety endpoint assessed by the Hospital Anxiety and Depression Scale-Anxiety scale (HADS-A) and to assess the effects of treatment on major adverse cardiac events over a follow-up period of up to 6 years., Results: Of the 128 participants initially randomized, 120 (94%) were available for follow-up. Participants randomized to the Escitalopram condition exhibited lower HADS-A scores (3.9 [3.1, 4.7]) compared to those randomized to Exercise (5.5 [4.6, 6.3]) (P = .007) and Placebo (5.3 [4.1, 6.5]) (P = .053). Over a median follow-up of 3.2 years (IQR: 2.3, 4.5), there were 29 adverse events but no significant between-group differences., Conclusion: In the UNWIND trial, 12 weeks of escitalopram treatment was effective in reducing anxiety. These beneficial effects were sustained for 6 months posttreatment. Although moderate or vigorous physical activity has a number of health benefits, exercise was not an effective treatment for anxiety in patients with CHD., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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34. A New Reaction for Improved Calibration of EPR Rapid-Freeze Quench Times: Kinetics of Ethylene Diamine Tetraacetate (EDTA) Transfer from Calcium(II) to Copper(II).
- Author
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Schroeter AL, Yang H, James CD, Hoffman BM, and Doan PE
- Abstract
The kinetics of the transfer of the chelate, ethylenediamine tetraacetate (EDTA), from Calcium(II) to Copper(II) in imidazole (Im) buffers near neutral pH, corresponding to the conversion, [Cu(II)Im
4 ]2+ → [Cu(II)EDTA]2- , are characterized with stopped-flow absorption spectroscopy and implemented as a tool for calibrating the interval between mixing and freezing, the freeze-quench time ( tQ ), of a rapid freeze-quench (RFQ) apparatus. The kinetics of this reaction are characterized by monitoring changes in UV-visible spectra (300 nm) due to changes in the charge-transfer band associated with the Cu2+ ions upon EDTA binding. Stopped-flow measurements show that the rates of conversion of the Cu2+ ions exhibit exponential kinetics on millisecond time scales at pH values less than 6.8. In parallel, we have developed a simple but precise method to quantitate the speciation of frozen solution mixtures of [Cu(II)(EDTA)]2- and tetraimidazole Cu(II) ([Cu(Im)4 ]2+ ) in X-band EPR spectra. The results are implemented in a simple high-precision 'recipe' for determining tQ . These procedures are more accurate and precise than the venerable reaction of aquometmyoglobin with azide for calibrating RFQ apparatus, with the benefit of avoiding high-concentrations of toxic azide solutions.- Published
- 2022
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35. Cobalt-Carbon Bonding in a Salen-Supported Cobalt(IV) Alkyl Complex Postulated in Oxidative MHAT Catalysis.
- Author
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Wilson CV, Kim D, Sharma A, Hooper RX, Poli R, Hoffman BM, and Holland PL
- Subjects
- Carbon, Catalysis, Ethylenediamines, Metals, Oxidation-Reduction, Oxidative Stress, Oxygen chemistry, Cobalt chemistry, Hydrogen chemistry
- Abstract
The catalytic hydrofunctionalization of alkenes through radical-polar crossover metal hydrogen atom transfer (MHAT) offers a mild pathway for the introduction of functional groups in sterically congested environments. For M = Co, this reaction is often proposed to proceed through secondary alkylcobalt(IV) intermediates, which have not been characterized unambiguously. Here, we characterize a metastable (salen)Co(isopropyl) cation, which is capable of forming C-O bonds with alcohols as proposed in the catalytic reaction. Electron nuclear double resonance (ENDOR) spectroscopy of this formally cobalt(IV) species establishes the presence of the cobalt-carbon bond, and accompanying DFT calculations indicate that the unpaired electron is localized on the cobalt center. Both experimental and computational studies show that the cobalt(IV)-carbon bond is stronger than the analogous bond in its cobalt(III) analogue, which is opposite of the usual oxidation state trend of bond energies. This phenomenon is attributable to an inverted ligand field that gives the bond Co
δ- -Cδ+ character and explains its electrophilic reactivity at the alkyl group. The inverted Co-C bond polarity also stabilizes the formally cobalt(IV) alkyl complex so that it is accessible at unusually low potentials. Even another cobalt(III) complex, [(salen)CoIII ]+ , is capable of oxidizing (salen)CoIII ( i Pr) to the formally cobalt(IV) state. These results give insight into the electronic structure, energetics, and reactivity of a key reactive intermediate in oxidative MHAT catalysis.- Published
- 2022
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36. [FeFe]-Hydrogenase: Defined Lysate-Free Maturation Reveals a Key Role for Lipoyl-H-Protein in DTMA Ligand Biosynthesis.
- Author
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Pagnier A, Balci B, Shepard EM, Yang H, Warui DM, Impano S, Booker SJ, Hoffman BM, Broderick WE, and Broderick JB
- Subjects
- Electron Spin Resonance Spectroscopy, Ligands, S-Adenosylmethionine, Hydrogenase metabolism, Iron-Sulfur Proteins
- Abstract
Maturation of [FeFe]-hydrogenase (HydA) involves synthesis of a CO, CN
- , and dithiomethylamine (DTMA)-coordinated 2Fe subcluster that is inserted into HydA to make the active hydrogenase. This process requires three maturation enzymes: the radical S-adenosyl-l-methionine (SAM) enzymes HydE and HydG, and the GTPase HydF. In vitro maturation with purified maturation enzymes has been possible only when clarified cell lysate was added, with the lysate presumably providing essential components for DTMA synthesis and delivery. Here we report maturation of [FeFe]-hydrogenase using a fully defined system that includes components of the glycine cleavage system (GCS), but no cell lysate. Our results reveal for the first time an essential role for the aminomethyl-lipoyl-H-protein of the GCS in hydrogenase maturation and the synthesis of the DTMA ligand of the H-cluster. In addition, we show that ammonia is the source of the bridgehead nitrogen of DTMA., (© 2022 Wiley-VCH GmbH.)- Published
- 2022
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37. Impact of extended emergency department stay on antibiotic re-dosing delays and outcomes in sepsis.
- Author
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Harpenau TL, Bhatti SN, Hoffman BM, and Kirsch WB
- Subjects
- Adolescent, Anti-Bacterial Agents therapeutic use, Emergency Service, Hospital, Hospital Mortality, Humans, Intensive Care Units, Length of Stay, Retrospective Studies, Sepsis, Shock, Septic
- Abstract
Background: For patients with sepsis and septic shock, the initial administration of antibiotics should occur as soon as possible, preferably within one hour of sepsis recognition. While clinicians are focused on providing first-doses of antibiotics quickly upon presentation, re-dosing issues may arise in patients who have an extended emergency department (ED) length of stay (LOS). Limited studies have been conducted that assess the impact of re-dosing delays. The purpose of this study was to assess the association of an extended ED LOS ≥ 6 h with antibiotic re-dosing delays in patients with sepsis and examine outcomes., Methods: A retrospective cohort study comparing patients with sepsis with an ED LOS of <6 h to those with an ED LOS of ≥6 h was performed between March 2018 and February 2020. Patients ≥18 years old admitted from the ED with sepsis or septic shock were included. The primary outcome was incidence of delay to the second dose of antibiotics in those with an extended ED LOS compared to those without. Secondary outcomes included intensive care unit (ICU) LOS, hospital LOS, rate of transfer from non-ICU to ICU settings, incidence and duration of mechanical ventilation, and in-hospital mortality. An exploratory analysis compared outcomes in patients with and without a re-dosing delay., Results: Of the 128 patients included, 99 patients had an ED LOS < 6 h and 29 patients had an ED LOS ≥ 6 h. A delay to second dose of antibiotics occurred in 30 (30.3%) patients in the ED LOS < 6 h group versus 7 (24.1%) patients in the ED LOS ≥ 6 h group (p = 0.52). Secondary outcomes did not significantly differ between the two groups. In-hospital mortality was numerically higher in those with a re-dosing delay when compared to those without in the exploratory analysis (18.9% vs. 8.8%, p = 0.11)., Conclusion: There was no statistically significant difference in the incidence of delays to the second dose of antibiotics among patients with sepsis with an ED LOS of <6 h versus those with an ED LOS of ≥6 h. The high incidence of antibiotic re-dosing delays in both groups, indicates an overall need for improved transitions of care in the ED sepsis population., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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38. The One-Electron Reduced Active-Site FeFe-Cofactor of Fe-Nitrogenase Contains a Hydride Bound to a Formally Oxidized Metal-Ion Core.
- Author
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Lukoyanov DA, Harris DF, Yang ZY, Pérez-González A, Dean DR, Seefeldt LC, and Hoffman BM
- Subjects
- Electron Spin Resonance Spectroscopy, Hydrogen chemistry, Metals metabolism, Molybdoferredoxin metabolism, Oxidation-Reduction, Electrons, Nitrogenase chemistry
- Abstract
The nitrogenase active-site cofactor must accumulate 4e
- /4H+ (E4 (4H) state) before N2 can bind and be reduced. Earlier studies demonstrated that this E4 (4H) state stores the reducing-equivalents as two hydrides, with the cofactor metal-ion core formally at its resting-state redox level. This led to the understanding that N2 binding is mechanistically coupled to reductive-elimination of the two hydrides that produce H2 . The state having acquired 2e- /2H+ (E2 (2H)) correspondingly contains one hydride with a resting-state core redox level. How the cofactor accommodates addition of the first e- /H+ (E1 (H) state) is unknown. The Fe-nitrogenase FeFe-cofactor was used to address this question because it is EPR-active in the E1 (H) state, unlike the FeMo-cofactor of Mo-nitrogenase, thus allowing characterization by EPR spectroscopy. The freeze-trapped E1 (H) state of Fe-nitrogenase shows an S = 1/2 EPR spectrum with g = [1.965, 1.928, 1.779]. This state is photoactive, and under 12 K cryogenic intracavity , 450 nm photolysis converts to a new and likewise photoactive S = 1/2 state (denoted E1 (H)*) with g = [2.009, 1.950, 1.860], which results in a photostationary state, with E1 (H)* relaxing to E1 (H) at temperatures above 145 K. An H/D kinetic isotope effect of 2.4 accompanies the 12 K E1 (H)/E1 (H)* photointerconversion. These observations indicate that the addition of the first e- /H+ to the FeFe-cofactor of Fe-nitrogenase produces an Fe-bound hydride, not a sulfur-bound proton. As a result, the cluster metal-ion core is formally one-electron oxidized relative to the resting state. It is proposed that this behavior applies to all three nitrogenase isozymes.- Published
- 2022
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39. A mixed-valent Fe(II)Fe(III) species converts cysteine to an oxazolone/thioamide pair in methanobactin biosynthesis.
- Author
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Park YJ, Jodts RJ, Slater JW, Reyes RM, Winton VJ, Montaser RA, Thomas PM, Dowdle WB, Ruiz A, Kelleher NL, Bollinger JM Jr, Krebs C, Hoffman BM, and Rosenzweig AC
- Subjects
- Copper metabolism, Ferric Compounds chemistry, Humans, Imidazoles, Oligopeptides, Oxygen metabolism, Thioamides, Cysteine, Oxazolone
- Abstract
SignificanceMethanobactins (Mbns), copper-binding peptidic compounds produced by some bacteria, are candidate therapeutics for human diseases of copper overload. The paired oxazolone-thioamide bidentate ligands of methanobactins are generated from cysteine residues in a precursor peptide, MbnA, by the MbnBC enzyme complex. MbnBC activity depends on the presence of iron and oxygen, but the catalytically active form has not been identified. Here, we provide evidence that a dinuclear Fe(II)Fe(III) center in MbnB, which is the only representative of a >13,000-member protein family to be characterized, is responsible for this reaction. These findings expand the known roles of diiron enzymes in biology and set the stage for mechanistic understanding, and ultimately engineering, of the MbnBC biosynthetic complex.
- Published
- 2022
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40. Mechanism of Radical S -Adenosyl- l-methionine Adenosylation: Radical Intermediates and the Catalytic Competence of the 5'-Deoxyadenosyl Radical.
- Author
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Lundahl MN, Sarksian R, Yang H, Jodts RJ, Pagnier A, Smith DF, Mosquera MA, van der Donk WA, Hoffman BM, Broderick WE, and Broderick JB
- Subjects
- Catalysis, Electron Spin Resonance Spectroscopy, Free Radicals chemistry, Methionine, S-Adenosylmethionine metabolism
- Abstract
Radical S -adenosyl-l-methionine (SAM) enzymes employ a [4Fe-4S] cluster and SAM to initiate diverse radical reactions via either H-atom abstraction or substrate adenosylation. Here we use freeze-quench techniques together with electron paramagnetic resonance (EPR) spectroscopy to provide snapshots of the reaction pathway in an adenosylation reaction catalyzed by the radical SAM enzyme pyruvate formate-lyase activating enzyme on a peptide substrate containing a dehydroalanine residue in place of the target glycine. The reaction proceeds via the initial formation of the organometallic intermediate Ω, as evidenced by the characteristic EPR signal with g
∥ = 2.035 and g⊥ = 2.004 observed when the reaction is freeze-quenched at 500 ms. Thermal annealing of frozen Ω converts it into a second paramagnetic species centered at giso = 2.004; this second species was generated directly using freeze-quench at intermediate times (∼8 s) and unequivocally identified via isotopic labeling and EPR spectroscopy as the tertiary peptide radical resulting from adenosylation of the peptide substrate. An additional paramagnetic species observed in samples quenched at intermediate times was revealed through thermal annealing while frozen and spectral subtraction as the SAM-derived 5'-deoxyadenosyl radical (5'-dAdo•). The time course of the 5'-dAdo• and tertiary peptide radical EPR signals reveals that the former generates the latter. These results thus support a mechanism in which Ω liberates 5'-dAdo• by Fe-C5' bond homolysis, and the 5'-dAdo• attacks the dehydroalanine residue of the peptide substrate to form the adenosylated peptide radical species. The results thus provide a picture of a catalytically competent 5'-dAdo• intermediate trapped just prior to reaction with the substrate.- Published
- 2022
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41. Small-Molecule Mn Antioxidants in Caenorhabditis elegans and Deinococcus radiodurans Supplant MnSOD Enzymes during Aging and Irradiation.
- Author
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Gaidamakova EK, Sharma A, Matrosova VY, Grichenko O, Volpe RP, Tkavc R, Conze IH, Klimenkova P, Balygina I, Horne WH, Gostinčar C, Chen X, Makarova KS, Shuryak I, Srinivasan C, Jackson-Thompson B, Hoffman BM, and Daly MJ
- Subjects
- Animals, Caenorhabditis elegans metabolism, Reactive Oxygen Species metabolism, Manganese metabolism, Superoxides metabolism, Superoxide Dismutase metabolism, Aging, Antioxidants metabolism, Deinococcus metabolism, Deinococcus radiation effects
- Abstract
Denham Harman's oxidative damage theory identifies superoxide (O
2 •- ) radicals as central agents of aging and radiation injury, with Mn2+ -dependent superoxide dismutase (MnSOD) as the principal O2 •- -scavenger. However, in the radiation-resistant nematode Caenorhabditis elegans, the mitochondrial antioxidant enzyme MnSOD is dispensable for longevity, and in the model bacterium Deinococcus radiodurans, it is dispensable for radiation resistance. Many radiation-resistant organisms accumulate small-molecule Mn2+ -antioxidant complexes well-known for their catalytic ability to scavenge O2 •- , along with MnSOD, as exemplified by D. radiodurans. Here, we report experiments that relate the MnSOD and Mn-antioxidant content to aging and oxidative stress resistances and which indicate that C. elegans, like D. radiodurans, may rely on Mn-antioxidant complexes as the primary defense against reactive oxygen species (ROS). Wild-type and ΔMnSOD D. radiodurans and C. elegans were monitored for gamma radiation sensitivities over their life spans while gauging Mn2+ -antioxidant content by electron paramagnetic resonance (EPR) spectroscopy, a powerful new approach to determining the in vivo Mn-antioxidant content of cells as they age. As with D. radiodurans, MnSOD is dispensable for radiation survivability in C. elegans, which hyperaccumulates Mn-antioxidants exceptionally protective of proteins. Unexpectedly, ΔMnSOD mutants of both the nematodes and bacteria exhibited increased gamma radiation survival compared to the wild-type. In contrast, the loss of MnSOD renders radiation-resistant bacteria sensitive to atmospheric oxygen during desiccation. Our results support the concept that the disparate responses to oxidative stress are explained by the accumulation of Mn-antioxidant complexes which protect, complement, and can even supplant MnSOD. IMPORTANCE The current theory of cellular defense against oxidative damage identifies antioxidant enzymes as primary defenders against ROS, with MnSOD being the preeminent superoxide (O2 •- ) scavenger. However, MnSOD is shown to be dispensable both for radiation resistance and longevity in model organisms, the bacterium Deinococcus radiodurans and the nematode Caenorhabditis elegans. Measured by electron paramagnetic resonance (EPR) spectroscopy, small-molecule Mn-antioxidant content was shown to decline in unison with age-related decreases in cell proliferation and radioresistance, which again are independent of MnSOD presence. Most notably, the Mn-antioxidant content of C. elegans drops precipitously in the last third of its life span, which links with reports that the steady-state level of oxidized proteins increases exponentially during the last third of the life span in animals. This leads us to propose that global responses to oxidative stress must be understood through an extended theory that includes small-molecule Mn-antioxidants as potent O2 •- -scavengers that complement, and can even supplant, MnSOD.- Published
- 2022
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42. End-On Copper(I) Superoxo and Cu(II) Peroxo and Hydroperoxo Complexes Generated by Cryoreduction/Annealing and Characterized by EPR/ENDOR Spectroscopy.
- Author
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Davydov R, Herzog AE, Jodts RJ, Karlin KD, and Hoffman BM
- Subjects
- Electron Spin Resonance Spectroscopy, Peroxides chemistry, Oxygen chemistry, Molecular Structure, Copper chemistry, Oxidation-Reduction, Coordination Complexes chemistry
- Abstract
In this report, we investigate the physical and chemical properties of monocopper Cu(I) superoxo and Cu(II) peroxo and hydroperoxo complexes. These are prepared by cryoreduction/annealing of the parent [LCu
I (O2 )]+ Cu(I) dioxygen adducts with the tripodal, N4 -coordinating, tetradentate ligands L =PV tmpa,DMM tmpa, TMG3 tren and are best described as [LCuII (O2 •- )]+ Cu(II) complexes that possess end-on (η1 -O2 •- ) superoxo coordination. Cryogenic γ-irradiation (77 K) of the EPR-silent parent complexes generates mobile electrons from the solvent that reduce the [LCuII (O2 •- )]+ within the frozen matrix, trapping the reduced form fixed in the structure of the parent complex. Cryoannealing, namely progressively raising the temperature of a frozen sample in stages and then cooling back to low temperature at each stage for examination, tracks the reduced product as it relaxes its structure and undergoes chemical transformations. We employ EPR and ENDOR (electron-nuclear double resonance) as powerful spectroscopic tools for examining the properties of the states that form. Surprisingly, the primary products of reduction of the Cu(II) superoxo species are metastable cuprous superoxo [LCuI (O2 •- )]+ complexes. During annealing to higher temperatures this state first undergoes internal electron transfer (IET) to form the end-on Cu(II) peroxo state, which is then protonated to form Cu(II)-OOH species. This is the first time these methods, which have been used to determine key details of metalloenzyme catalytic cycles and are a powerful tools for tracking PCET reactions, have been applied to copper coordination compounds.- Published
- 2022
- Full Text
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43. Effect of Exercise, Escitalopram, or Placebo on Anxiety in Patients With Coronary Heart Disease: The Understanding the Benefits of Exercise and Escitalopram in Anxious Patients With Coronary Heart Disease (UNWIND) Randomized Clinical Trial.
- Author
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Blumenthal JA, Smith PJ, Jiang W, Hinderliter A, Watkins LL, Hoffman BM, Kraus WE, Liao L, Davidson J, and Sherwood A
- Subjects
- Aged, Anxiety Disorders drug therapy, Anxiety Disorders epidemiology, Comorbidity, Coronary Disease epidemiology, Depression drug therapy, Depression epidemiology, Escitalopram administration & dosage, Escitalopram adverse effects, Female, Humans, Male, Middle Aged, Selective Serotonin Reuptake Inhibitors administration & dosage, Selective Serotonin Reuptake Inhibitors adverse effects, Anxiety Disorders therapy, Coronary Disease psychology, Depression therapy, Escitalopram pharmacology, Exercise Therapy, Outcome Assessment, Health Care, Selective Serotonin Reuptake Inhibitors pharmacology
- Abstract
Importance: Anxiety is common among patients with coronary heart disease (CHD) and is associated with worse health outcomes; however, effective treatment for anxiety in patients with CHD is uncertain., Objective: To determine whether exercise and escitalopram are better than placebo in reducing symptoms of anxiety as measured by the Hospital Anxiety and Depression-Anxiety Subscale (HADS-A) and in improving CHD risk biomarkers., Design, Setting, and Participants: This randomized clinical trial was conducted between January 2016 and May 2020 in a tertiary care teaching hospital in the US and included 128 outpatients with stable CHD and a diagnosed anxiety disorder or a HADS-A score of 8 or higher who were older than 40 years, sedentary, and not currently receiving mental health treatment., Interventions: Twelve weeks of aerobic exercise 3 times per week at an intensity of 70% to 85% heart rate reserve, escitalopram (up to 20 mg per day), or placebo pill equivalent., Main Outcomes and Measures: The primary outcome was HADS-A score. CHD biomarkers included heart rate variability, baroreflex sensitivity, and flow-mediated dilation, along with 24-hour urinary catecholamines., Results: The study included 128 participants. The mean (SD) age was 64.6 (9.6) years, and 37 participants (29%) were women. Participants randomized to the exercise group and escitalopram group reported greater reductions in HADS-A (exercise, -4.0; 95% CI, -4.7 to -3.2; escitalopram, -5.7; 95% CI, -6.4 to -5.0) compared with those randomized to placebo (-3.5; 95% CI, -4.5 to -2.4; P = .03); participants randomized to escitalopram reported less anxiety compared with those randomized to exercise (-1.67; 95% CI, -2.68 to -0.66; P = .002). Significant postintervention group differences in 24-hour urinary catecholamines were found (exercise z score = 0.05; 95% CI, -0.2 to 0.3; escitalopram z score = -0.24; 95% CI, -0.4 to 0; placebo z score = 0.36; 95% CI, 0 to 0.7), with greater reductions in the exercise group and escitalopram group compared with the placebo group (F1,127 = 4.93; P = .01) and greater reductions in the escitalopram group compared with the exercise group (F1,127 = 4.37; P = .04). All groups achieved comparable but small changes in CHD biomarkers, with no differences between treatment groups., Conclusions and Relevance: Treatment of anxiety with escitalopram was safe and effective for reducing anxiety in patients with CHD. However, the beneficial effects of exercise on anxiety symptoms were less consistent. Exercise and escitalopram did not improve CHD biomarkers of risk, which should prompt further investigation of these interventions on clinical outcomes in patients with anxiety and CHD., Trial Registration: ClinicalTrials.gov Identifier: NCT02516332.
- Published
- 2021
- Full Text
- View/download PDF
44. Hydrocarbon Oxidation by an Exposed, Multiply Bonded Iron(III) Oxo Complex.
- Author
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Valdez-Moreira JA, Beagan DM, Yang H, Telser J, Hoffman BM, Pink M, Carta V, and Smith JM
- Abstract
The iron oxo unit, [Fe=O]
n + is a critical intermediate in biological oxidation reactions. While its higher oxidation states are well studied, relatively little is known about the least-oxidized form [FeIII =O]+ . Here, the thermally stable complex PhB(AdIm)3 Fe=O has been structurally, spectroscopically, and computationally characterized as a bona fide iron(III) oxo. An unusually short Fe-O bond length is consistent with iron-oxygen multiple bond character and is supported by electronic structure calculations. The complex is thermally stable yet is able to perform hydrocarbon oxidations, facilitating both C-O bond formation and dehydrogenation reactions., Competing Interests: The authors declare no competing financial interest., (© 2021 The Authors. Published by American Chemical Society.)- Published
- 2021
- Full Text
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45. Coordination of the Copper Centers in Particulate Methane Monooxygenase: Comparison between Methanotrophs and Characterization of the Cu C Site by EPR and ENDOR Spectroscopies.
- Author
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Jodts RJ, Ross MO, Koo CW, Doan PE, Rosenzweig AC, and Hoffman BM
- Subjects
- Methylocystaceae metabolism, Models, Molecular, Protein Conformation, Copper chemistry, Electron Spin Resonance Spectroscopy methods, Methylocystaceae enzymology, Oxygenases chemistry, Oxygenases metabolism
- Abstract
In nature, methane is oxidized to methanol by two enzymes, the iron-dependent soluble methane monooxygenase (sMMO) and the copper-dependent particulate MMO (pMMO). While sMMO's diiron metal active site is spectroscopically and structurally well-characterized, pMMO's copper sites are not. Recent EPR and ENDOR studies have established the presence of two monocopper sites, but the coordination environment of only one has been determined, that within the PmoB subunit and denoted Cu
B . Moreover, this recent work only focused on a type I methanotrophic pMMO, while previous observations of the type II enzyme were interpreted in terms of the presence of a dicopper site. First, this report shows that the type II Methylocystis species strain Rockwell pMMO, like the type I pMMOs, contains two monocopper sites and that its CuB site has a coordination environment identical to that of type I enzymes. As such, for the full range of pMMOs this report completes the refutation of prior and ongoing suggestions of multicopper sites. Second, and of primary importance, EPR/ENDOR measurements (a) for the first time establish the coordination environment of the spectroscopically observed site, provisionally denoted CuC , in both types of pMMO, thereby (b) establishing the assignment of this site observed by EPR to the crystallographically observed metal-binding site in the PmoC subunit. Finally, these results further indicate that CuC is the likely site of biological methane oxidation by pMMO, a conclusion that will serve as a foundation for proposals regarding the mechanism of this reaction.- Published
- 2021
- Full Text
- View/download PDF
46. Metal ion fluxes controlling amphibian fertilization.
- Author
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Seeler JF, Sharma A, Zaluzec NJ, Bleher R, Lai B, Schultz EG, Hoffman BM, LaBonne C, Woodruff TK, and O'Halloran TV
- Subjects
- Animals, Embryo, Nonmammalian metabolism, Embryo, Nonmammalian ultrastructure, Exocytosis physiology, Fertilization drug effects, Metals, Heavy pharmacology, Ovum drug effects, Ovum ultrastructure, Fertilization physiology, Metals, Heavy metabolism, Ovum metabolism, Xenopus laevis metabolism
- Abstract
Mammalian oocytes undergo major changes in zinc content and localization to be fertilized, the most striking being the rapid exocytosis of over 10 billion zinc ions in what are known as zinc sparks. Here, we report that fertilization of amphibian Xenopus laevis eggs also initiates a zinc spark that progresses across the cell surface in coordination with dynamic calcium waves. This zinc exocytosis is accompanied by a newly recognized loss of intracellular manganese. Synchrotron-based X-ray fluorescence and analytical electron microscopy reveal that zinc and manganese are sequestered in a system of cortical granules that are abundant at the animal pole. Through electron-nuclear double-resonance studies, we rule out Mn
2+ complexation with phosphate or nitrogenous ligands in intact eggs, but the data are consistent with a carboxylate coordination environment. Our observations suggest that zinc and manganese fluxes are a conserved feature of fertilization in vertebrates and that they function as part of a physiological block to polyspermy.- Published
- 2021
- Full Text
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47. Exploring the Role of the Central Carbide of the Nitrogenase Active-Site FeMo-cofactor through Targeted 13 C Labeling and ENDOR Spectroscopy.
- Author
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Pérez-González A, Yang ZY, Lukoyanov DA, Dean DR, Seefeldt LC, and Hoffman BM
- Subjects
- Azotobacter vinelandii enzymology, Carbon Isotopes, Catalytic Domain, Electron Spin Resonance Spectroscopy, Isotope Labeling, Molecular Conformation, Molybdoferredoxin chemistry, Nitrogenase chemistry, Nitrogenase isolation & purification, Molybdoferredoxin metabolism, Nitrogenase metabolism
- Abstract
Mo-dependent nitrogenase is a major contributor to global biological N
2 reduction, which sustains life on Earth. Its multi-metallic active-site FeMo-cofactor (Fe7 MoS9 C-homocitrate) contains a carbide (C4- ) centered within a trigonal prismatic CFe6 core resembling the structural motif of the iron carbide, cementite. The role of the carbide in FeMo-cofactor binding and activation of substrates and inhibitors is unknown. To explore this role, the carbide has been in effect selectively enriched with13 C, which enables its detailed examination by ENDOR/ESEEM spectroscopies.13 C-carbide ENDOR of the S = 3/2 resting state (E0 ) is remarkable, with an extremely small isotropic hyperfine coupling constant,C a = +0.86 MHz. Turnover under high CO partial pressure generates the S = 1/2 hi-CO state, with two CO molecules bound to FeMo-cofactor. This conversion surprisingly leaves the small magnitude of the13 C carbide isotropic hyperfine-coupling constant essentially unchanged,C a = -1.30 MHz. This indicates that both the E0 and hi-CO states exhibit an exchange-coupling scheme with nearly cancelling contributions toC a from three spin-up and three spin-down carbide-bound Fe ions. In contrast, the anisotropic hyperfine coupling constant undergoes a symmetry change upon conversion of E0 to hi-CO that may be associated with bonding and coordination changes at Fe ions. In combination with the negligible difference between CFe6 core structures of E0 and hi-CO, these results suggest that in CO-inhibited hi-CO the dominant role of the FeMo-cofactor carbide is to maintain the core structure, rather than to facilitate inhibitor binding through changes in Fe-carbide covalency or stretching/breaking of carbide-Fe bonds.- Published
- 2021
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48. An ecophysiological explanation for manganese enrichment in rock varnish.
- Author
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Lingappa UF, Yeager CM, Sharma A, Lanza NL, Morales DP, Xie G, Atencio AD, Chadwick GL, Monteverde DR, Magyar JS, Webb SM, Valentine JS, Hoffman BM, and Fischer WW
- Subjects
- Antioxidants metabolism, Cyanobacteria metabolism, Geologic Sediments microbiology, Microbiota, Oxidation-Reduction, Sunlight, Water, Ecological and Environmental Phenomena, Geologic Sediments chemistry, Manganese analysis
- Abstract
Desert varnish is a dark rock coating that forms in arid environments worldwide. It is highly and selectively enriched in manganese, the mechanism for which has been a long-standing geological mystery. We collected varnish samples from diverse sites across the western United States, examined them in petrographic thin section using microscale chemical imaging techniques, and investigated the associated microbial communities using 16S amplicon and shotgun metagenomic DNA sequencing. Our analyses described a material governed by sunlight, water, and manganese redox cycling that hosts an unusually aerobic microbial ecosystem characterized by a remarkable abundance of photosynthetic Cyanobacteria in the genus Chroococcidiopsis as the major autotrophic constituent. We then showed that diverse Cyanobacteria, including the relevant Chroococcidiopsis taxon, accumulate extraordinary amounts of intracellular manganese-over two orders of magnitude higher manganese content than other cells. The speciation of this manganese determined by advanced paramagnetic resonance techniques suggested that the Cyanobacteria use it as a catalytic antioxidant-a valuable adaptation for coping with the substantial oxidative stress present in this environment. Taken together, these results indicated that the manganese enrichment in varnish is related to its specific uptake and use by likely founding members of varnish microbial communities., Competing Interests: The authors declare no competing interest., (Copyright © 2021 the Author(s). Published by PNAS.)
- Published
- 2021
- Full Text
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49. Copper binding by a unique family of metalloproteins is dependent on kynurenine formation.
- Author
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Manesis AC, Jodts RJ, Hoffman BM, and Rosenzweig AC
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Copper metabolism, Crystallography, X-Ray, Kynurenine biosynthesis, Kynurenine genetics, Metalloproteins genetics, Metalloproteins metabolism, Methylosinus trichosporium genetics, Methylosinus trichosporium metabolism, Protein Domains, Bacterial Proteins chemistry, Copper chemistry, Kynurenine chemistry, Metalloproteins chemistry, Methylosinus trichosporium chemistry
- Abstract
Some methane-oxidizing bacteria use the ribosomally synthesized, posttranslationally modified natural product methanobactin (Mbn) to acquire copper for their primary metabolic enzyme, particulate methane monooxygenase. The operons encoding the machinery to biosynthesize and transport Mbns typically include genes for two proteins, MbnH and MbnP, which are also found as a pair in other genomic contexts related to copper homeostasis. While the MbnH protein, a member of the bacterial diheme cytochrome c peroxidase (bC c P)/MauG superfamily, has been characterized, the structure and function of MbnP, the relationship between the two proteins, and their role in copper homeostasis remain unclear. Biochemical characterization of MbnP from the methanotroph Methylosinus trichosporium OB3b now reveals that MbnP binds a single copper ion, present in the +1 oxidation state, with high affinity. Copper binding to MbnP in vivo is dependent on oxidation of the first tryptophan in a conserved WxW motif to a kynurenine, a transformation that occurs through an interaction of MbnH with MbnP. The 2.04-Å-resolution crystal structure of MbnP reveals a unique fold and an unusual copper-binding site involving a histidine, a methionine, a solvent ligand, and the kynurenine. Although the kynurenine residue may not serve as a Cu
I primary-sphere ligand, being positioned ∼2.9 Å away from the CuI ion, its presence is required for copper binding. Genomic neighborhood analysis indicates that MbnP proteins, and by extension kynurenine-containing copper sites, are widespread and may play diverse roles in microbial copper homeostasis., Competing Interests: The authors declare no competing interest.- Published
- 2021
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- View/download PDF
50. Interplays of electron and nuclear motions along CO dissociation trajectory in myoglobin revealed by ultrafast X-rays and quantum dynamics calculations.
- Author
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Shelby ML, Wildman A, Hayes D, Mara MW, Lestrange PJ, Cammarata M, Balducci L, Artamonov M, Lemke HT, Zhu D, Seideman T, Hoffman BM, Li X, and Chen LX
- Subjects
- Animals, Cattle, Heme chemistry, Heme metabolism, Iron chemistry, Myoglobin metabolism, Protein Binding, Carbon Monoxide chemistry, Molecular Dynamics Simulation, Myoglobin chemistry
- Abstract
Ultrafast structural dynamics with different spatial and temporal scales were investigated during photodissociation of carbon monoxide (CO) from iron(II)-heme in bovine myoglobin during the first 3 ps following laser excitation. We used simultaneous X-ray transient absorption (XTA) spectroscopy and X-ray transient solution scattering (XSS) at an X-ray free electron laser source with a time resolution of 80 fs. Kinetic traces at different characteristic X-ray energies were collected to give a global picture of the multistep pathway in the photodissociation of CO from heme. In order to extract the reaction coordinates along different directions of the CO departure, XTA data were collected with parallel and perpendicular relative polarizations of the laser pump and X-ray probe pulse to isolate the contributions of electronic spin state transition, bond breaking, and heme macrocycle nuclear relaxation. The time evolution of the iron K-edge X-ray absorption near edge structure (XANES) features along the two major photochemical reaction coordinates, i.e., the iron(II)-CO bond elongation and the heme macrocycle doming relaxation were modeled by time-dependent density functional theory calculations. Combined results from the experiments and computations reveal insight into interplays between the nuclear and electronic structural dynamics along the CO photodissociation trajectory. Time-resolved small-angle X-ray scattering data during the same process are also simultaneously collected, which show that the local CO dissociation causes a protein quake propagating on different spatial and temporal scales. These studies are important for understanding gas transport and protein deligation processes and shed light on the interplay of active site conformational changes and large-scale protein reorganization., Competing Interests: The authors declare no competing interest.
- Published
- 2021
- Full Text
- View/download PDF
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