313 results on '"Hill EM"'
Search Results
2. Structural Control on Downdip Locking Extent of the Himalayan Megathrust
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Lindsey, EO, Almeida, R, Mallick, R, Hubbard, J, Bradley, K, Tsang, LLH, Liu, Y, Burgmann, R, and Hill, EM
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interseismic deformation ,fault geometry ,Nepal ,Main Himalayan Thrust ,fault structure ,duplex ,Geochemistry ,Geology ,Geophysics - Abstract
Geologic reconstructions of the Main Himalayan Thrust in Nepal show a laterally extensive midcrustal ramp, hypothesized to form the downdip boundary of interseismic locking. Using a recent compilation of interseismic GPS velocities and a simplified model of fault coupling, we estimate the width of coupling across Nepal using a series of two-dimensional transects. We find that the downdip width of fault coupling increases smoothly from 70 to 90 km in eastern Nepal to 100–110 km in central Nepal, then narrows again in western Nepal. The inferred coupling transition is closely aligned with geologic reconstructions of the base of the midcrustal ramp in central and eastern Nepal, but in western Nepal, the data suggest that the location is intermediate between two proposed ramp locations. The result for western Nepal implies either an anomalous coupling transition that occurs along a shallowly dipping portion of the fault or that both ramps may be partially coupled and that a proposed crustal-scale duplexing process may be active during the interseismic period. We also find that the models require a convergence rate of 15.5 ± 2 mm/year throughout Nepal, reducing the geodetic moment accumulation rate by up to 30% compared with earlier models, partially resolving an inferred discrepancy between geodetic and paleoseismic estimates of moment release across the Himalaya.
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- 2018
3. A simulation-based approach for estimating the time-dependent reproduction number from temporally aggregated disease incidence time series data
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Ogi-Gittins, I, primary, Hart, WS, additional, Song, J, additional, Nash, RK, additional, Polonsky, J, additional, Cori, A, additional, Hill, EM, additional, and Thompson, RN, additional
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- 2024
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4. Mastication Treatments Increase Perennial Herbaceous Cover Across Soil Types in Southeastern Colorado Piñon-Juniper Woodlands
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Nigro, KM, Nigro, KM, Bankston, TZ, Demarest, AB, Foster, AC, Gonzalez, AD, Hill, EM, Wion, AP, Wion, GD, Addington, RN, Amme, N, May, TM, Pague, CA, Rondeau, R, Redmond, MD, Nigro, KM, Nigro, KM, Bankston, TZ, Demarest, AB, Foster, AC, Gonzalez, AD, Hill, EM, Wion, AP, Wion, GD, Addington, RN, Amme, N, May, TM, Pague, CA, Rondeau, R, and Redmond, MD
- Abstract
Tree-removal treatments have been broadly applied across piñon-juniper ecosystems of the western United States to reduce tree cover, stimulate understory plant production, and promote habitat for shrub- and grassland-obligate wildlife species. Mastication treatments have become an increasingly common approach, yet the efficacy of these treatments can vary on the basis of a variety of factors, including soil characteristics, woodland structure, and grazing pressures. Here, we assessed vegetation responses to mastication treatments across three dominant soil types in two-needle piñon (Pinus edulis Engelm. [Pinaceae])−one-seed juniper (Juniperus monosperma [Engelm.] Sarg.) woodlands in southeast Colorado, United States, a region characterized by monsoonal precipitation, limited presence of introduced plant species, and relatively high grazing intensity by cattle and wildlife. We found that mastication treatments were effective at increasing herbaceous plant cover and species diversity (by 1.2 × and 1.5 ×) and at reducing the amount of exposed soil (60% reduction) 3 yr following treatment. This was mainly due to increases in native perennial grasses. Further, there were limited (and insignificant) increases in cover of annual plants and low abundance of introduced species in treated plots. Understory plant responses to treatment were similar across soils with a range of available water capacities. The increase in understory plant cover and richness paired with the low abundance of introduced species suggests that mastication treatments increase forage production for cattle and wild ungulates. In addition, the lack of soil type differences in treatment response suggests that mastication treatment placement does not need to prioritize soil type and can instead focus on other key areas of importance, such as wildlife habitat connectivity, historic woodland structure, and treatment feasibility.
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- 2023
5. Short-term forecasts to inform the response to the Covid-19 epidemic in the UK
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Funk, S, Abbott, S, Atkins, BD, Baguelin, M, Baillie, JK, Birrell, P, Blake, J, Bosse, NI, Burton, J, Carruthers, J, Davies, NG, De Angelis, D, Dyson, L, Edmunds, WJ, Eggo, RM, Ferguson, NM, Gaythorpe, K, Gorsich, E, Guyver-Fletcher, G, Hellewell, J, Hill, EM, Holmes, A, House, TA, Jewell, C, Jit, M, Jombart, T, Joshi, I, Keeling, MJ, Kendall, E, Knock, ES, Kucharski, AJ, Lythgoe, KA, Meakin, SR, Munday, JD, Openshaw, PJM, Overton, CE, Pagani, F, Pearson, J, Perez-Guzman, PN, Pellis, L, Scarabel, F, Semple, MG, Sherratt, K, Tang, M, Tildesley, MJ, Van Leeuwen, E, and Whittles, LK
- Abstract
BackgroundShort-term forecasts of infectious disease can aid situational awareness and planning for outbreak response. Here, we report on multi-model forecasts of Covid-19 in the UK that were generated at regular intervals starting at the end of March 2020, in order to monitor expected healthcare utilisation and population impacts in real time.MethodsWe evaluated the performance of individual model forecasts generated between 24 March and 14 July 2020, using a variety of metrics including the weighted interval score as well as metrics that assess the calibration, sharpness, bias and absolute error of forecasts separately. We further combined the predictions from individual models into ensemble forecasts using a simple mean as well as a quantile regression average that aimed to maximise performance. We compared model performance to a null model of no change.ResultsIn most cases, individual models performed better than the null model, and ensembles models were well calibrated and performed comparatively to the best individual models. The quantile regression average did not noticeably outperform the mean ensemble.ConclusionsEnsembles of multi-model forecasts can inform the policy response to the Covid-19 pandemic by assessing future resource needs and expected population impact of morbidity and mortality.
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- 2020
6. Evaluating the impact of an enhanced support implementation of the PReCePT (PRevention of Cerebral palsy in Pre-Term labour) quality improvement toolkit to increase the uptake of magnesium sulphate in pre-term deliveries for the prevention of neurodisabilities: study protocol for a cluster randomized controlled trial
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Edwards, HB, primary, Redaniel, MT, additional, Opmeer, BC, additional, Peters, TJ, additional, Margelyte, R, additional, Sillero, Rejon C, additional, Hollingworth, W, additional, Craggs, P, additional, Hill, EM, additional, Redwood, S, additional, Donovan, JL, additional, and Luyt, K, additional
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- 2020
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7. Effect of a Low-Intensity PSA-Based Screening Intervention on Prostate Cancer Mortality: The CAP Randomized Clinical Trial
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Martin, RM, Donovan, JL, Turner, EL, Metcalfe, C, Young, GJ, Walsh, EI, Lane, JA, Noble, S, Oliver, SE, Evans, S, Sterne, JAC, Holding, P, Ben-Shlomo, Y, Brindle, P, Williams, NJ, Hill, EM, Ng, SY, Toole, J, Tazewell, MK, Hughes, LJ, Davies, CF, Thorn, JC, Down, E, Smith, GD, Neal, DE, Hamdy, FC, Martin, R, Donovan, J, Neal, D, Hamdy, F, Turner, E, Athene Lane, J, Sterne, J, Frankel, S, Bollina, P, Catto, J, Doble, A, Doherty, A, Gillatt, D, Gnanapragasam, V, Hughes, O, Kockelbergh, R, Kynaston, H, Paul, A, Paez, E, Rosario, DJ, Rowe, E, Gnanapragasam, Vincent [0000-0003-4722-4207], and Apollo - University of Cambridge Repository
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Male ,Age Distribution ,Primary Health Care ,Social Class ,Humans ,Mass Screening ,Prostatic Neoplasms ,Middle Aged ,Prostate-Specific Antigen ,Early Detection of Cancer ,United Kingdom ,Aged ,Follow-Up Studies - Abstract
IMPORTANCE Prostate cancer screening remains controversial because potential mortality or quality-of-life benefits may be outweighed by harms from overdetection and overtreatment. OBJECTIVE To evaluate the effect of a single prostate-specific antigen (PSA) screening intervention and standardized diagnostic pathway on prostate cancer-specific mortality. DESIGN, SETTING, AND PARTICIPANTS The Cluster Randomized Trial of PSA Testing for Prostate Cancer (CAP) included 419 582 men aged 50 to 69 years and was conducted at 573 primary care practices across the United Kingdom. Randomization and recruitment of the practices occurred between 2001 and 2009; patient follow-up ended on March 31, 2016. INTERVENTION An invitation to attend a PSA testing clinic and receive a single PSA test vs standard (unscreened) practice. MAIN OUTCOMES AND MEASURES Primary outcome: prostate cancer-specific mortality at a median follow-up of 10 years. Prespecified secondary outcomes: diagnostic cancer stage and Gleason grade (range, 2-10; higher scores indicate a poorer prognosis) of prostate cancers identified, all-cause mortality, and an instrumental variable analysis estimating the causal effect of attending the PSA screening clinic. RESULTS Among 415 357 randomizedmen(mean [SD] age, 59.0[5.6] years), 189 386 in the intervention group and 219 439 in the control groupwere included in the analysis (n = 408 825; 98%). In the intervention group, 75 707 (40%)attended the PSAtesting clinic and 67 313 (36%) underwent PSAtesting. Of 64 436 with a valid PSAtest result, 6857 (11%) had a PSA level between 3 ng/mLand 19.9 ng/mL, ofwhom5850 (85%) had a prostate biopsy. After a median follow-up of 10 years, 549 (0.30 per 1000 person-years) died of prostate cancer in the intervention group vs 647 (0.31 per 1000 person-years) in the control group (rate difference, -0.013 per 1000 person-years [95%CI, -0.047 to0.022]; rate ratio [RR] ,0.96 [95%CI,0.85 to 1.08]; P = .50). The number diagnosed with prostate cancerwas higher in the intervention group (n = 8054; 4.3%) than in the control group (n = 7853; 3.6%) (RR, 1.19 [95%CI, 1.14 to 1.25] ; P < .001). More prostate cancer tumors with a Gleason grade of 6 or lowerwere identified in the intervention group (n = 3263/189 386 [1.7%]) than in the control group (n = 2440/219 439 [1.1%] ) (difference per 1000 men, 6.11 [95%CI, 5.38 to 6.84]; P < .001). In the analysis of all-cause mortality, therewere 25 459 deaths in the intervention group vs 28 306 deaths in the control group (RR,0.99 [95%CI,0.94 to 1.03]; P = .49). In the instrumental variable analysis for prostate cancer mortality, the adherence-adjusted causal RRwas0.93 (95%CI,0.67 to 1.29; P = .66). CONCLUSIONS AND RELEVANCE Among practices randomized to a single PSA screening intervention vs standard practice without screening, there was no significant difference in prostate cancer mortality after a median follow-up of 10 years but the detection of low-risk prostate cancer cases increased. Although longer-term follow-up is under way, the findings do not support single PSA testing for population-based screening. TRIAL REGISTRATION ISRCTN Identifier: ISRCTN92187251.
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- 2018
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8. Spreading of components of mood in adolescent social networks
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Eyre, RW, House, T, Hill, EM, Griffiths, FE, Eyre, RW, House, T, Hill, EM, and Griffiths, FE
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Recent research has provided evidence that mood can spread over social networks via social contagion, but that, in seeming contradiction to this, depression does not. Here, we investigate whether there is evidence for the individual components of mood (such as appetite, tiredness and sleep) spreading through US adolescent friendship networks while adjusting for confounding by modelling the transition probabilities of changing mood state over time. We find that having more friends with worse mood is associated with a higher probability of an adolescent worsening in mood and a lower probability of improving, and vice versa for friends with better mood, for the overwhelming majority of mood components. We also show, however, that this effect is not strong enough in the negative direction to lead to a significant increase in depression incidence, helping to resolve the seeming contradictory nature of existing research. Our conclusions, therefore, link in to current policy discussions on the importance of subthreshold levels of depressive symptoms and could help inform interventions against depression in high schools.
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- 2017
9. Preceptors
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Hill Em and Lowenstein Le
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Medical–Surgical Nursing ,Human–computer interaction ,Process (computing) ,Orientation (graph theory) ,Psychology - Published
- 1992
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10. Borderline personality disorder symptoms and severity of sexual abuse
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Kenneth R. Silk, Hill Em, Lohr Ne, and Lee S
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Adult ,Male ,medicine.medical_specialty ,Time Factors ,Adolescent ,Victimology ,Poison control ,Suicide prevention ,Severity of Illness Index ,Borderline Personality Disorder ,Recurrence ,Injury prevention ,medicine ,Humans ,Psychiatry ,Psychological abuse ,Child ,Borderline personality disorder ,Probability ,Psychiatric Status Rating Scales ,Human factors and ergonomics ,Child Abuse, Sexual ,Middle Aged ,medicine.disease ,Self Concept ,Regression, Psychology ,Psychotherapy ,Psychiatry and Mental health ,Suicide ,Logistic Models ,Sexual abuse ,Female ,Psychology - Abstract
OBJECTIVE: This study explored the relationship of specific symptoms of borderline personality disorder to dimensions of severity of sexual abuse experiences in childhood. METHOD: A group of 41 patients with borderline personality disorder who retrospectively reported a childhood history of sexual abuse on the Familial Experiences Interview were studied. Six items from the Diagnostic Interview for Borderline Patients (DIB) were chosen on the basis of their univariate (chi-square) association with a sexual abuse severity scale that was developed by the authors and their research team. These six DIB items were each modeled in a logistic regression. Predictor variables were the most severe experience within each of three dimensions of sexual abuse: 1) perpetrator (sexual abuse by a parent), 2) duration (sexual abuse that was ongoing), and 3) type (sexual abuse that involved penetration). RESULTS: The severity dimension that was most frequently found to be a significant predictor of the sum of the six DIB items as well as the total scaled DIB score was the duration dimension. Ongoing sexual abuse predicted parasuicidal behavior as well. CONCLUSIONS: Ongoing sexual abuse may be a strong determinant of specific aspects of the disordered interpersonal behavior and functioning found in patients with borderline personality disorder. The expectation that the world is an empty, malevolent place may have some of its roots in the repetition of sexual abuse experiences in childhood. This expectation of malevolence among patients with borderline personality disorder may manifest itself in psychotherapy through regressive and distancing behavior. Language: en
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- 1995
11. Evaluating the impact of wind turbine noise on health-related quality of life.
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Shepherd D, McBride D, Welch D, Dirks KN, and Hill EM
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- 2011
12. Guidelines for the management of severe head injury: are emergency physicians following them?
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Huizenga JE, Zink BJ, Maio RF, and Hill EM
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- 2002
13. Prevalence of domestic violence and associated factors among women on a trauma service.
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Melnick DM, Maio RF, Blow FC, Hill EM, Wang SC, Pomerantz R, Kane ML, Graham-Bermann S, Weber J, and Farber MS
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- 2002
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14. Awareness and use of hepatitis B vaccine among homosexual male clients of a Boston community health center.
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McCusker J, Hill EM, and Mayer KH
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- 1990
15. Derivation and validation of criteria for determining the appropriateness of nonemergency ambulance transports.
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Chu KH, Gregor MA, Maio RF, Hill EM, and Swor RA
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- 1997
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16. Population-focused and community-based nursing -- moving toward clarification of concepts.
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Baldwin JH, Conger CO, Abegglen JC, and Hill EM
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Rapid health care delivery system changes combined with the Institute of Medicine's (1988) call for refocusing public health practice into the Core Functions provide an opportunity to shape community/public health nursing (C/PHN) education and practice for the future. Critical examination is the key to clarifying C/PHN practice. What is the practice now? Is it population-focused, community-based, or both? And what do these terms mean today? The purpose of this paper is to share the authors' thinking about what it is that makes population-focused nursing 'different' from community-based practice, as well as unique and useful to the health care delivery system, through the examination of old and new terms and concepts. The significance of this article lies in its ability to encourage dialogue among our colleagues. It is hoped that thoughts shared here will stimulate action to define C/PHN practice in broader arenas. [ABSTRACT FROM AUTHOR]
- Published
- 1998
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17. Infection control. Surgical hand scrubbing techniques.
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Hill EM
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- 2009
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18. A genome-wide SNP-association study confirms a sequence variant (g.66493737C>T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses
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Whiston Ronan, Gu Jingjing, McGivney Beatrice A, Hill Emmeline W, and MacHugh David E
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Thoroughbred horses have been selected for traits contributing to speed and stamina for centuries. It is widely recognized that inherited variation in physical and physiological characteristics is responsible for variation in individual aptitude for race distance, and that muscle phenotypes in particular are important. Results A genome-wide SNP-association study for optimum racing distance was performed using the EquineSNP50 Bead Chip genotyping array in a cohort of n = 118 elite Thoroughbred racehorses divergent for race distance aptitude. In a cohort-based association test we evaluated genotypic variation at 40,977 SNPs between horses suited to short distance (≤ 8 f) and middle-long distance (> 8 f) races. The most significant SNP was located on chromosome 18: BIEC2-417495 ~690 kb from the gene encoding myostatin (MSTN) [Punadj. = 6.96 × 10-6]. Considering best race distance as a quantitative phenotype, a peak of association on chromosome 18 (chr18:65809482-67545806) comprising eight SNPs encompassing a 1.7 Mb region was observed. Again, similar to the cohort-based analysis, the most significant SNP was BIEC2-417495 (Punadj. = 1.61 × 10-9; PBonf. = 6.58 × 10-5). In a candidate gene study we have previously reported a SNP (g.66493737C>T) in MSTN associated with best race distance in Thoroughbreds; however, its functional and genome-wide relevance were uncertain. Additional re-sequencing in the flanking regions of the MSTN gene revealed four novel 3' UTR SNPs and a 227 bp SINE insertion polymorphism in the 5' UTR promoter sequence. Linkage disequilibrium was highest between g.66493737C>T and BIEC2-417495 (r2 = 0.86). Conclusions Comparative association tests consistently demonstrated the g.66493737C>T SNP as the superior variant in the prediction of distance aptitude in racehorses (g.66493737C>T, P = 1.02 × 10-10; BIEC2-417495, Punadj. = 1.61 × 10-9). Functional investigations will be required to determine whether this polymorphism affects putative transcription-factor binding and gives rise to variation in gene and protein expression. Nonetheless, this study demonstrates that the g.66493737C>T SNP provides the most powerful genetic marker for prediction of race distance aptitude in Thoroughbreds.
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- 2010
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19. Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training
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MacHugh David E, Lohan Amanda, Loftus Brendan J, Fonseca Rita G, Evans Alexander CO, Browne John A, McGettigan Paul A, McGivney Beatrice A, Murphy Barbara A, Katz Lisa M, and Hill Emmeline W
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Digital gene expression profiling was used to characterize the assembly of genes expressed in equine skeletal muscle and to identify the subset of genes that were differentially expressed following a ten-month period of exercise training. The study cohort comprised seven Thoroughbred racehorses from a single training yard. Skeletal muscle biopsies were collected at rest from the gluteus medius at two time points: T1 - untrained, (9 ± 0.5 months old) and T2 - trained (20 ± 0.7 months old). Results The most abundant mRNA transcripts in the muscle transcriptome were those involved in muscle contraction, aerobic respiration and mitochondrial function. A previously unreported over-representation of genes related to RNA processing, the stress response and proteolysis was observed. Following training 92 tags were differentially expressed of which 74 were annotated. Sixteen genes showed increased expression, including the mitochondrial genes ACADVL, MRPS21 and SLC25A29 encoded by the nuclear genome. Among the 58 genes with decreased expression, MSTN, a negative regulator of muscle growth, had the greatest decrease. Functional analysis of all expressed genes using FatiScan revealed an asymmetric distribution of 482 Gene Ontology (GO) groups and 18 KEGG pathways. Functional groups displaying highly significant (P < 0.0001) increased expression included mitochondrion, oxidative phosphorylation and fatty acid metabolism while functional groups with decreased expression were mainly associated with structural genes and included the sarcoplasm, laminin complex and cytoskeleton. Conclusion Exercise training in Thoroughbred racehorses results in coordinate changes in the gene expression of functional groups of genes related to metabolism, oxidative phosphorylation and muscle structure.
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- 2010
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20. Transcriptional adaptations following exercise in Thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy
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Park Stephen DE, O'Gorman Grace M, MacLeod James N, MacHugh David E, Eivers Suzanne S, McGivney Beatrice A, Katz Lisa M, and Hill Emmeline W
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Selection for exercise-adapted phenotypes in the Thoroughbred racehorse has provided a valuable model system to understand molecular responses to exercise in skeletal muscle. Exercise stimulates immediate early molecular responses as well as delayed responses during recovery, resulting in a return to homeostasis and enabling long term adaptation. Global mRNA expression during the immediate-response period has not previously been reported in skeletal muscle following exercise in any species. Also, global gene expression changes in equine skeletal muscle following exercise have not been reported. Therefore, to identify novel genes and key regulatory pathways responsible for exercise adaptation we have used equine-specific cDNA microarrays to examine global mRNA expression in skeletal muscle from a cohort of Thoroughbred horses (n = 8) at three time points (before exercise, immediately post-exercise, and four hours post-exercise) following a single bout of treadmill exercise. Results Skeletal muscle biopsies were taken from the gluteus medius before (T0), immediately after (T1) and four hours after (T2) exercise. Statistically significant differences in mRNA abundance between time points (T0 vs T1 and T0 vs T2) were determined using the empirical Bayes moderated t-test in the Bioconductor package Linear Models for Microarray Data (LIMMA) and the expression of a select panel of genes was validated using real time quantitative reverse transcription PCR (qRT-PCR). While only two genes had increased expression at T1 (P < 0.05), by T2 932 genes had increased (P < 0.05) and 562 genes had decreased expression (P < 0.05). Functional analysis of genes differentially expressed during the recovery phase (T2) revealed an over-representation of genes localized to the actin cytoskeleton and with functions in the MAPK signalling, focal adhesion, insulin signalling, mTOR signaling, p53 signaling and Type II diabetes mellitus pathways. At T1, using a less stringent statistical approach, we observed an over-representation of genes involved in the stress response, metabolism and intracellular signaling. These findings suggest that protein synthesis, mechanosensation and muscle remodeling contribute to skeletal muscle adaptation towards improved integrity and hypertrophy. Conclusions This is the first study to characterize global mRNA expression profiles in equine skeletal muscle using an equine-specific microarray platform. Here we reveal novel genes and mechanisms that are temporally expressed following exercise providing new knowledge about the early and late molecular responses to exercise in the equine skeletal muscle transcriptome.
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- 2009
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21. Transcriptional profiling of cattle infected with Trypanosoma congolense highlights gene expression signatures underlying trypanotolerance and trypanosusceptibility
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Naessens Jan, Agaba Morris, Coussens Paul M, Meade Kieran G, Hill Emmeline W, Park Stephen DE, O'Gorman Grace M, Kemp Stephen J, and MacHugh David E
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Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background African animal trypanosomiasis (AAT) caused by tsetse fly-transmitted protozoa of the genus Trypanosoma is a major constraint on livestock and agricultural production in Africa and is among the top ten global cattle diseases impacting on the poor. Here we show that a functional genomics approach can be used to identify temporal changes in host peripheral blood mononuclear cell (PBMC) gene expression due to disease progression. We also show that major gene expression differences exist between cattle from trypanotolerant and trypanosusceptible breeds. Using bovine long oligonucleotide microarrays and real time quantitative reverse transcription PCR (qRT-PCR) validation we analysed PBMC gene expression in naïve trypanotolerant and trypanosusceptible cattle experimentally challenged with Trypanosoma congolense across a 34-day infection time course. Results Trypanotolerant N'Dama cattle displayed a rapid and distinct transcriptional response to infection, with a ten-fold higher number of genes differentially expressed at day 14 post-infection compared to trypanosusceptible Boran cattle. These analyses identified coordinated temporal gene expression changes for both breeds in response to trypanosome infection. In addition, a panel of genes were identified that showed pronounced differences in gene expression between the two breeds, which may underlie the phenomena of trypanotolerance and trypanosusceptibility. Gene ontology (GO) analysis demonstrate that the products of these genes may contribute to increased mitochondrial mRNA translational efficiency, a more pronounced B cell response, an elevated activation status and a heightened response to stress in trypanotolerant cattle. Conclusion This study has revealed an extensive and diverse range of cellular processes that are altered temporally in response to trypanosome infection in African cattle. Results indicate that the trypanotolerant N'Dama cattle respond more rapidly and with a greater magnitude to infection compared to the trypanosusceptible Boran cattle. Specifically, a subset of the genes analyzed by real time qRT-PCR, which display significant breed differences, could collectively contribute to the trypanotolerance trait in N'Dama.
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- 2009
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22. Predictors of psychosocial outcomes for patients with mood disorders: the effects of self-help group participation.
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Powell TJ, Yeaton W, Hill EM, and Silk KR
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This study examined the predictors of psychosocial outcomes (daily functioning and management of illness) for people with mood disorders. After controlling for demographic, severity of illness, and social support predictor variables, the study evaluated whether participation in self-help groups would predict improved psychosocial outcomes. Post-hospitalization data were examined for 144 mood disorder patients using hierarchic multiple regression. More education predicted improved daily functioning; self-help involvement and education predicted management of illness. The implications of these findings for providing recovery-oriented rehabilitation services are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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23. The time between symptom onset and various clinical outcomes: a statistical analysis of MERS-CoV patients in Saudi Arabia.
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Althobaity YM, Alkhudaydi MH, Hill EM, Thompson RN, and Tildesley MJ
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In this study, we investigate the impact of demographic characteristics on Middle East respiratory syndrome coronavirus (MERS-CoV) cases in Saudi Arabia, specifically focusing on the time intervals between symptom onset and key events such as hospitalization, case confirmation, reporting and death. We estimate these intervals using data from 2196 cases occurring between June 2012 and January 2020, partitioning the data into four age groups (0-24 years, 25-49 years, 50-74 years and 75-100 years). The duration from symptom onset to hospitalization varies between age cohorts, ranging from 4.03 to 4.75 days, with the 75-100 age group experiencing the longest delay. The interval from symptom onset to case confirmation spans 5.83-8.24 days, and again, the 75-100 age group faces the lengthiest delay. The interval from symptom onset and case reporting ranges from 7.0 to 9.8 days, with the 75-100 age group experiencing the longest delay. The period from symptom onset to death varies across age groups (12.3-16.1 days), with elevated mortality rates during outbreaks. Importantly, we observe age-based differences in the risk of hospitalization and other measures of infection severity, including the probability of death conditional on hospitalization. Careful quantification of epidemiological characteristics, including inference of key epidemiological periods and assessments of differences between cases of different ages, plays a crucial role in understanding the progression of MERS-CoV outbreaks and formulating effective public health strategies to mitigate their impact., Competing Interests: We declare we have no competing interests., (© 2024 The Author(s).)
- Published
- 2024
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24. Slow rupture in a fluid-rich fault zone initiated the 2024 M w 7.5 Noto earthquake.
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Ma Z, Zeng H, Luo H, Liu Z, Jiang Y, Aoki Y, Wang W, Itoh Y, Lyu M, Cui Y, Yun SH, Hill EM, and Wei S
- Abstract
The 2024 moment magnitude 7.5 Noto Peninsula (Japan) earthquake caused devastation to communities and was generated by a complex rupture process. Using space geodetic and seismic observations, we have shown that the event deformed the peninsula with a peak uplift reaching 5 meters at the west coast. Shallow slip exceeded 10 meters on an offshore fault. Peak stress drop was greater than 10 megapascals. This devastating event began with a slow rupture propagation lasting 15 to 20 seconds near its hypocenter, where seismic swarms had surged since 2020 because of lower-crust fluid supply. The slow start was accompanied by intense high-frequency seismic radiation. These observations suggest a distinct coseismic slip mode reflecting high heterogeneity in fault properties within a fluid-rich fault zone.
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- 2024
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25. Prioritising older individuals for COVID-19 booster vaccination leads to optimal public health outcomes in a range of socio-economic settings.
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Bouros I, Hill EM, Keeling MJ, Moore S, and Thompson RN
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- Humans, Aged, Socioeconomic Factors, Middle Aged, Vaccination statistics & numerical data, Pandemics prevention & control, COVID-19 prevention & control, COVID-19 epidemiology, Immunization, Secondary statistics & numerical data, COVID-19 Vaccines administration & dosage, COVID-19 Vaccines immunology, Public Health, SARS-CoV-2 immunology
- Abstract
The rapid development of vaccines against SARS-CoV-2 altered the course of the COVID-19 pandemic. In most countries, vaccinations were initially targeted at high-risk populations, including older individuals and healthcare workers. Now, despite substantial infection- and vaccine-induced immunity in host populations worldwide, waning immunity and the emergence of novel variants continue to cause significant waves of infection and disease. Policy makers must determine how to deploy booster vaccinations, particularly when constraints in vaccine supply, delivery and cost mean that booster vaccines cannot be administered to everyone. A key question is therefore whether older individuals should again be prioritised for vaccination, or whether alternative strategies (e.g. offering booster vaccines to the individuals who have most contacts with others and therefore drive infection) can instead offer indirect protection to older individuals. Here, we use mathematical modelling to address this question, considering SARS-CoV-2 transmission in a range of countries with different socio-economic backgrounds. We show that the population structures of different countries can have a pronounced effect on the impact of booster vaccination, even when identical booster vaccination targeting strategies are adopted. However, under the assumed transmission model, prioritising older individuals for booster vaccination consistently leads to the most favourable public health outcomes in every setting considered. This remains true for a range of assumptions about booster vaccine supply and timing, and for different assumed policy objectives of booster vaccination., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Bouros et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.)
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- 2024
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26. Symptom propagation in respiratory pathogens of public health concern: a review of the evidence.
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Asplin P, Mancy R, Finnie T, Cumming F, Keeling MJ, and Hill EM
- Subjects
- Humans, Respiratory Tract Infections epidemiology, Respiratory Tract Infections virology, Models, Biological, COVID-19 epidemiology, SARS-CoV-2, Influenza, Human epidemiology, Public Health
- Abstract
Symptom propagation occurs when the symptom set an individual experiences is correlated with the symptom set of the individual who infected them. Symptom propagation may dramatically affect epidemiological outcomes, potentially causing clusters of severe disease. Conversely, it could result in chains of mild infection, generating widespread immunity with minimal cost to public health. Despite accumulating evidence that symptom propagation occurs for many respiratory pathogens, the underlying mechanisms are not well understood. Here, we conducted a scoping literature review for 14 respiratory pathogens to ascertain the extent of evidence for symptom propagation by two mechanisms: dose-severity relationships and route-severity relationships. We identify considerable heterogeneity between pathogens in the relative importance of the two mechanisms, highlighting the importance of pathogen-specific investigations. For almost all pathogens, including influenza and SARS-CoV-2, we found support for at least one of the two mechanisms. For some pathogens, including influenza, we found convincing evidence that both mechanisms contribute to symptom propagation. Furthermore, infectious disease models traditionally do not include symptom propagation. We summarize the present state of modelling advancements to address the methodological gap. We then investigate a simplified disease outbreak scenario, finding that under strong symptom propagation, isolating mildly infected individuals can have negative epidemiological implications.
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- 2024
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27. Correction: Seasonal influenza: Modelling approaches to capture immunity propagation.
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Hill EM, Petrou S, de Lusignan S, Yonova I, and Keeling MJ
- Abstract
[This corrects the article DOI: 10.1371/journal.pcbi.1007096.]., (Copyright: © 2024 Hill et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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28. Graded FGF activity patterns distinct cell types within the apical sensory organ of the sea anemone Nematostella vectensis.
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Sabin KZ, Chen S, Hill EM, Weaver KJ, Yonke J, Kirkman M, Redwine WB, Klompen AML, Zhao X, Guo F, McKinney MC, Dewey JL, and Gibson MC
- Subjects
- Animals, Nervous System, Gastrulation genetics, Genes, Homeobox, Sea Anemones genetics
- Abstract
Bilaterian animals have evolved complex sensory organs comprised of distinct cell types that function coordinately to sense the environment. Each sensory unit has a defined architecture built from component cell types, including sensory cells, non-sensory support cells, and dedicated sensory neurons. Whether this characteristic cellular composition is present in the sensory organs of non-bilaterian animals is unknown. Here, we interrogate the cell type composition and gene regulatory networks controlling development of the larval apical sensory organ in the sea anemone Nematostella vectensis. Using single cell RNA sequencing and imaging approaches, we reveal two unique cell types in the Nematostella apical sensory organ, GABAergic sensory cells and a putative non-sensory support cell population. Further, we identify the paired-like (PRD) homeodomain gene prd146 as a specific sensory cell marker and show that Prd146
+ sensory cells become post-mitotic after gastrulation. Genetic loss of function approaches show that Prd146 is essential for apical sensory organ development. Using a candidate gene knockdown approach, we place prd146 downstream of FGF signaling in the apical sensory organ gene regulatory network. Further, we demonstrate that an aboral FGF activity gradient coordinately regulates the specification of both sensory and support cells. Collectively, these experiments define the genetic basis for apical sensory organ development in a non-bilaterian animal and reveal an unanticipated degree of complexity in a prototypic sensory structure., Competing Interests: Declaration of competing interest The authors have no conflict of interests to disclose., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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29. A tripartite model of the psychotherapy relationship: Interrelations among its components and their unfolding across sessions.
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Hill EM, An M, Kivlighan DM, and Gelso CJ
- Subjects
- Humans, Female, Adult, Male, Therapeutic Alliance, Models, Psychological, Middle Aged, Young Adult, Transference, Psychology, Psychotherapy methods, Professional-Patient Relations, Countertransference
- Abstract
The tripartite model of the therapy relationship, which includes the working alliance, real relationship, and transference-countertransference configuration, has been a useful way to conceptualize the complexity of the connection between a therapist and a client. However, little research has focused on the interrelationships between these three components over time. This study sought to replicate the findings of Bhatia and Gelso (2018) by examining the between-person relationships among each of the three elements averaged across all sessions. Additionally, we extended earlier work by examining the within-person relationship between the working alliance, the real relationship, and transference-countertransference with themselves as well as with each of the other elements across sessions. Using 5,931 sessions across 142 clients and 36 therapists, we examined time-ordered associations among the cocreated working alliance, cocreated real relationship, and the therapist-rated transference-countertransference configuration using latent variable dynamic structural equation modeling. Results replicated the findings of Bhatia and Gelso (2018), demonstrating that in one session, the working alliance and the real relationship were positively related, and both the working alliance and the real relationship were negatively related to the transference-countertransference configuration. Regarding the interrelations over time, the findings revealed that the working alliance in the previous session had a significant and positive relationship with real relationship in the current session, and the real relationship in the previous session was related to reduced transference-countertransference in the current session. These findings provide support for complex interrelations among the components over time. (PsycInfo Database Record (c) 2024 APA, all rights reserved).
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- 2024
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30. CountASAP: A Lightweight, Easy to Use Python Package for Processing ASAPseq Data.
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Boughter CT, Chatterjee B, Ohta Y, Gorga K, Blair C, Hill EM, Fasana Z, Adebamowo A, Ammar F, Kosik I, Murugan V, Chen WH, Singh NJ, and Meier-Schellersheim M
- Abstract
Declining sequencing costs coupled with the increasing availability of easy-to-use kits for the isolation of DNA and RNA transcripts from single cells have driven a rapid proliferation of studies centered around genomic and transcriptomic data. Simultaneously, a wealth of new techniques have been developed that utilize single cell technologies to interrogate a broad range of cell-biological processes. One recently developed technique, transposase-accessible chromatin with sequencing (ATAC) with select antigen profiling by sequencing (ASAPseq), provides a combination of chromatin accessibility assessments with measurements of cell-surface marker expression levels. While software exists for the characterization of these datasets, there currently exists no tool explicitly designed to reformat ASAP surface marker FASTQ data into a count matrix which can then be used for these downstream analyses. To address this, we created CountASAP, an easy-to-use Python package purposefully designed to transform FASTQ files from ASAP experiments into count matrices compatible with commonly-used downstream bioinformatic analysis packages. CountASAP takes advantage of the independence of the relevant data structures to perform fully parallelized matches of each sequenced read to user-supplied input ASAP oligos and unique cell-identifier sequences., Competing Interests: Competing Interests The authors declare no competing interests.
- Published
- 2024
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31. Epidemiological and health economic implications of symptom propagation in respiratory pathogens: A mathematical modelling investigation.
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Asplin P, Keeling MJ, Mancy R, and Hill EM
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- Humans, Pandemics, Models, Theoretical, Computational Biology, Models, Economic, Respiratory Tract Infections epidemiology, Respiratory Tract Infections virology, Respiratory Tract Infections economics, Public Health economics, COVID-19 epidemiology, COVID-19 economics, Influenza, Human epidemiology, Influenza, Human economics, SARS-CoV-2
- Abstract
Background: Respiratory pathogens inflict a substantial burden on public health and the economy. Although the severity of symptoms caused by these pathogens can vary from asymptomatic to fatal, the factors that determine symptom severity are not fully understood. Correlations in symptoms between infector-infectee pairs, for which evidence is accumulating, can generate large-scale clusters of severe infections that could be devastating to those most at risk, whilst also conceivably leading to chains of mild or asymptomatic infections that generate widespread immunity with minimal cost to public health. Although this effect could be harnessed to amplify the impact of interventions that reduce symptom severity, the mechanistic representation of symptom propagation within mathematical and health economic modelling of respiratory diseases is understudied., Methods and Findings: We propose a novel framework for incorporating different levels of symptom propagation into models of infectious disease transmission via a single parameter, α. Varying α tunes the model from having no symptom propagation (α = 0, as typically assumed) to one where symptoms always propagate (α = 1). For parameters corresponding to three respiratory pathogens-seasonal influenza, pandemic influenza and SARS-CoV-2-we explored how symptom propagation impacted the relative epidemiological and health-economic performance of three interventions, conceptualised as vaccines with different actions: symptom-attenuating (labelled SA), infection-blocking (IB) and infection-blocking admitting only mild breakthrough infections (IB_MB). In the absence of interventions, with fixed underlying epidemiological parameters, stronger symptom propagation increased the proportion of cases that were severe. For SA and IB_MB, interventions were more effective at reducing prevalence (all infections and severe cases) for higher strengths of symptom propagation. For IB, symptom propagation had no impact on effectiveness, and for seasonal influenza this intervention type was more effective than SA at reducing severe infections for all strengths of symptom propagation. For pandemic influenza and SARS-CoV-2, at low intervention uptake, SA was more effective than IB for all levels of symptom propagation; for high uptake, SA only became more effective under strong symptom propagation. Health economic assessments found that, for SA-type interventions, the amount one could spend on control whilst maintaining a cost-effective intervention (termed threshold unit intervention cost) was very sensitive to the strength of symptom propagation., Conclusions: Overall, the preferred intervention type depended on the combination of the strength of symptom propagation and uptake. Given the importance of determining robust public health responses, we highlight the need to gather further data on symptom propagation, with our modelling framework acting as a template for future analysis., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Asplin et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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32. Complete genome sequences of nine Rhodococcus equi phages.
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Radersma MD, Lathrop G, Moleakunnel KC, Harlow LA, Baker AE, Chen AJ, Churu JG, Dole CA, Doorn SL, Hill EM, Howland A, Janvier A, Kramer CM, Minasian MJ, Nieze JR, Perezrios IK, Ramsey FJ, Seinen KL, Swierenga SK, Veenstra MM, Weaver GE, White AC, Yoon E, Wertz JT, and DeJong RJ
- Abstract
We report genomes of nine phages isolated from Actinobacteria Rhodococcus equi NRRL B-16538. Six of these phages belong to actinobacteriophage cluster CR, which otherwise contains Gordonia phages; two form the CF cluster; and one is a singleton. Genome lengths are 62,017-80,980 bp with 63.9%-67.3% GC content., Competing Interests: The authors declare no conflict of interest.
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- 2024
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33. Maternal preconception stress produces sex-specific effects at the maternal:fetal interface to impact offspring development and phenotypic outcomes†.
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Cissé YM, Montgomery KR, Zierden HC, Hill EM, Kane PJ, Huang W, Kane MA, and Bale TL
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- Humans, Pregnancy, Mice, Female, Male, Animals, Fetus metabolism, Signal Transduction, Diet, High-Fat adverse effects, Placenta metabolism, Weight Gain
- Abstract
Entering pregnancy with a history of adversity, including adverse childhood experiences and racial discrimination stress, is a predictor of negative maternal and fetal health outcomes. Little is known about the biological mechanisms by which preconception adverse experiences are stored and impact future offspring health outcomes. In our maternal preconception stress (MPS) model, female mice underwent chronic stress from postnatal days 28-70 and were mated 2 weeks post-stress. Maternal preconception stress dams blunted the pregnancy-induced shift in the circulating extracellular vesicle proteome and reduced glucose tolerance at mid-gestation, suggesting a shift in pregnancy adaptation. To investigate MPS effects at the maternal:fetal interface, we probed the mid-gestation placental, uterine, and fetal brain tissue transcriptome. Male and female placentas differentially regulated expression of genes involved in growth and metabolic signaling in response to gestation in an MPS dam. We also report novel offspring sex- and MPS-specific responses in the uterine tissue apposing these placentas. In the fetal compartment, MPS female offspring reduced expression of neurodevelopmental genes. Using a ribosome-tagging transgenic approach we detected a dramatic increase in genes involved in chromatin regulation in a PVN-enriched neuronal population in females at PN21. While MPS had an additive effect on high-fat-diet (HFD)-induced weight gain in male offspring, both MPS and HFD were necessary to induce significant weight gain in female offspring. These data highlight the preconception period as a determinant of maternal health in pregnancy and provides novel insights into mechanisms by which maternal stress history impacts offspring developmental programming., (© The Author(s) 2023. Published by Oxford University Press on behalf of Society for the Study of Reproduction. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2024
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34. Quality improvement interventions to increase the uptake of magnesium sulphate in preterm deliveries for the prevention of cerebral palsy (PReCePT study): a cluster randomised controlled trial.
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Edwards HB, Redaniel MT, Sillero-Rejon C, Pithara-McKeown C, Margelyte R, Stone T, Peters TJ, Hollingworth W, McLeod H, Craggs P, Hill EM, Redwood S, Treloar E, Donovan JL, Opmeer BC, and Luyt K
- Subjects
- Infant, Newborn, Female, Pregnancy, Humans, Magnesium Sulfate therapeutic use, Quality Improvement, Parturition, Premature Birth prevention & control, Premature Birth drug therapy, Cerebral Palsy prevention & control
- Abstract
Objective: To compare two quality improvement (QI) interventions to improve antenatal magnesium sulphate (MgSO
4 ) uptake in preterm births for the prevention of cerebral palsy., Design: Unblinded cluster randomised controlled trial., Setting: Academic Health Sciences Network, England, 2018., Sample: Maternity units with ≥10 preterm deliveries annually and MgSO4 uptake of ≤70%; 40 (27 NPP, 13 enhanced support) were included (randomisation stratified by MgSO4 uptake)., Methods: The National PReCePT Programme (NPP) gave maternity units QI materials (clinical guidance, training), regional support, and midwife backfill funding. Enhanced support units received this plus extra backfill funding and unit-level QI coaching., Main Outcome Measures: MgSO4 uptake was compared using routine data and multivariable linear regression. Net monetary benefit was estimated, based on implementation costs, lifetime quality-adjusted life-years and societal costs. The implementation process was assessed through qualitative interviews., Results: MgSO4 uptake increased in all units, with no evidence of any difference between groups (0.84 percentage points lower uptake in the enhanced group, 95% CI -5.03 to 3.35). The probability of enhanced support being cost-effective was <30%. NPP midwives gave more than their funded hours for implementation. Units varied in their support needs. Enhanced support units reported better understanding, engagement and perinatal teamwork., Conclusions: PReCePT improved MgSO4 uptake in all maternity units. Enhanced support did not further improve uptake but may improve teamwork, and more accurately represented the time needed for implementation. Targeted enhanced support, sustainability of improvements and the possible indirect benefits of stronger teamwork associated with enhanced support should be explored further., (© 2023 The Authors. BJOG: An International Journal of Obstetrics and Gynaecology published by John Wiley & Sons Ltd.)- Published
- 2024
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35. Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic.
- Author
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Sherratt K, Carnegie AC, Kucharski A, Cori A, Pearson CAB, Jarvis CI, Overton C, Weston D, Hill EM, Knock E, Fearon E, Nightingale E, Hellewell J, Edmunds WJ, Villabona Arenas J, Prem K, Pi L, Baguelin M, Kendall M, Ferguson N, Davies N, Eggo RM, van Elsland S, Russell T, Funk S, Liu Y, and Abbott S
- Abstract
Background: The COVID-19 pandemic both relied and placed significant burdens on the experts involved from research and public health sectors. The sustained high pressure of a pandemic on responders, such as healthcare workers, can lead to lasting psychological impacts including acute stress disorder, post-traumatic stress disorder, burnout, and moral injury, which can impact individual wellbeing and productivity., Methods: As members of the infectious disease modelling community, we convened a reflective workshop to understand the professional and personal impacts of response work on our community and to propose recommendations for future epidemic responses. The attendees represented a range of career stages, institutions, and disciplines. This piece was collectively produced by those present at the session based on our collective experiences., Results: Key issues we identified at the workshop were lack of institutional support, insecure contracts, unequal credit and recognition, and mental health impacts. Our recommendations include rewarding impactful work, fostering academia-public health collaboration, decreasing dependence on key individuals by developing teams, increasing transparency in decision-making, and implementing sustainable work practices., Conclusions: Despite limitations in representation, this workshop provided valuable insights into the UK COVID-19 modelling experience and guidance for future public health crises. Recognising and addressing the issues highlighted is crucial, in our view, for ensuring the effectiveness of epidemic response work in the future., Competing Interests: No competing interests were disclosed., (Copyright: © 2024 Sherratt K et al.)
- Published
- 2024
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36. Wine-Mom Culture, Alcohol Use, and Drinking Motives: A Descriptive Study and Cross-Cultural Exploration of American and British Mothers.
- Author
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Hill EM and Mazurek ME
- Subjects
- Humans, Female, United States, Alcohol Drinking, Cross-Cultural Comparison, Motivation, Ethanol, Adaptation, Psychological, Wine, Alcoholism
- Abstract
Objective: "Wine-mom" culture, which promotes the idea that women should use alcohol to cope with the stressors of parenting, is pervasive in modern society, yet remains an under-researched variable in the context of women's alcohol use. The present investigation was a descriptive study and cross-cultural exploration (United States vs. United Kingdom) of the association between wine-mom culture (perceptions of wine-mom culture and related behaviors) and various alcohol-related outcomes, parenting experiences, and drinking motives. Methods: This study included 233 American and 233 British mothers recruited through Prolific. Participants completed the study questions/questionnaires in Qualtrics; they completed nine items measuring their perceptions of and engagement with wine-mom culture, the Alcohol Use Disorders Identification Test, the Parental Stress Scale, and the Drinking Motives Questionnaire-Revised, along with questions about their alcohol use and parenting experiences. Results: Our results indicated that although American mothers were more familiar with wine-mom culture than British mothers, the correlations observed were similar for both groups. Some of the wine-mom culture variables were associated with problematic alcohol use and parenting stress. Additionally, wine-mom culture-related behaviors had moderate to strong positive correlations with drinking to cope motives. Conclusion: Our findings suggest that future research should examine the role of wine-mom culture in the perception that alcohol can-or should-be used as a form of self-medication. Other future directions and considerations for this area of study are discussed.
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- 2024
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37. Topological structures and syntenic conservation in sea anemone genomes.
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Zimmermann B, Montenegro JD, Robb SMC, Fropf WJ, Weilguny L, He S, Chen S, Lovegrove-Walsh J, Hill EM, Chen CY, Ragkousi K, Praher D, Fredman D, Schultz D, Moran Y, Simakov O, Genikhovich G, Gibson MC, and Technau U
- Abstract
There is currently little information about the evolution of gene clusters, genome architectures and karyotypes in early branching animals. Slowly evolving anthozoan cnidarians can be particularly informative about the evolution of these genome features. Here we report chromosome-level genome assemblies of two related anthozoans, the sea anemones Nematostella vectensis and Scolanthus callimorphus. We find a robust set of 15 chromosomes with a clear one-to-one correspondence between the two species. Both genomes show chromosomal conservation, allowing us to reconstruct ancestral cnidarian and metazoan chromosomal blocks, consisting of at least 19 and 16 ancestral linkage groups, respectively. We show that, in contrast to Bilateria, the Hox and NK clusters of investigated cnidarians are largely disintegrated, despite the presence of staggered hox/gbx expression in Nematostella. This loss of microsynteny conservation may be facilitated by shorter distances between cis-regulatory sequences and their cognate transcriptional start sites. We find no clear evidence for topologically associated domains, suggesting fundamental differences in long-range gene regulation compared to vertebrates. These data suggest that large sets of ancestral metazoan genes have been retained in ancestral linkage groups of some extant lineages; yet, higher order gene regulation with associated 3D architecture may have evolved only after the cnidarian-bilaterian split., (© 2023. The Author(s).)
- Published
- 2023
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38. Problematic alcohol use and food and alcohol disturbance in mothers: Examining the role of stress, body dissatisfaction, and wine-mom-consistent drinking.
- Author
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Hill EM and Mazurek ME
- Subjects
- Humans, Female, United States, Adult, Alcohol Drinking epidemiology, Alcohol Drinking psychology, Mothers, Motivation, Wine, Body Dissatisfaction
- Abstract
Objective: In recent years, women have significantly closed the alcohol use gender gap-and they are drinking more heavily now than in previous decades (Keyes et al., 2019). Furthermore, "wine-mom" culture (which promotes the use of alcohol to cope with the stressors of parenthood) has become increasingly prevalent in society and may be a factor in mothers' alcohol use. In the present study, we examined wine-mom-consistent drinking (whether one's alcohol use corresponds to that promoted by wine-mom culture) as a moderator in the relationship between psychosocial predictors (stress, body dissatisfaction) and alcohol-related outcomes (problematic alcohol use, food and alcohol disturbance-FAD)., Methods: Participants were mothers (M
age = 40.18, SD = 8.28) recruited through Prolific from both the United States and the United Kingdom (n = 466; 50 % from the US and UK each); they completed the study via a Qualtrics survey., Results: In the models tested, stress interacted with wine-mom-consistent drinking in predicting FAD (alcohol effects and restriction dimensions), and body dissatisfaction interacted with wine-mom-consistent drinking in predicting the FAD restriction dimension. Compared to those who did not endorse wine-mom-consistent drinking, the relationship between the predictors and the FAD dimensions was stronger among participants who endorsed wine-mom-consistent drinking. Body dissatisfaction and wine-mom-consistent drinking also emerged as significant independent predictors in some of the models., Conclusion: Wine-mom-consistent drinking is associated with problematic alcohol use and FAD among mothers. Further research is needed to better understand wine-mom culture and related psychosocial factors in mothers' drinking motives and behaviors., Competing Interests: Declaration of competing interest The authors declare no conflict of interest., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2023
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39. Author Correction: Retrospectively modeling the effects of increased global vaccine sharing on the COVID-19 pandemic.
- Author
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Moore S, Hill EM, Dyson L, Tildesley MJ, and Keeling MJ
- Published
- 2023
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40. Incorporating heterogeneity in farmer disease control behaviour into a livestock disease transmission model.
- Author
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Hill EM, Prosser NS, Brown PE, Ferguson E, Green MJ, Kaler J, Keeling MJ, and Tildesley MJ
- Subjects
- Humans, Animals, Models, Theoretical, Disease Outbreaks prevention & control, Disease Outbreaks veterinary, Computer Simulation, Farmers psychology, Livestock
- Abstract
Human behaviour is critical to effective responses to livestock disease outbreaks, especially with respect to vaccination uptake. Traditionally, mathematical models used to inform this behaviour have not taken heterogeneity in farmer behaviour into account. We address this by exploring how heterogeneity in farmers vaccination behaviour can be incorporated to inform mathematical models. We developed and used a graphical user interface to elicit farmers (n = 60) vaccination decisions to an unfolding fast-spreading epidemic and linked this to their psychosocial and behavioural profiles. We identified, via cluster analysis, robust patterns of heterogeneity in vaccination behaviour. By incorporating these vaccination behavioural groupings into a mathematical model for a fast-spreading livestock infection, using computational simulation we explored how the inclusion of heterogeneity in farmer disease control behaviour may impact epidemiological and economic focused outcomes. When assuming homogeneity in farmer behaviour versus configurations informed by the psychosocial profile cluster estimates, the modelled scenarios revealed a disconnect in projected distributions and threshold statistics across outbreak size, outbreak duration and economic metrics., Competing Interests: Declaration of Competing Interest None., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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41. Emergence of SARS-CoV-2 Delta Variant and Effect of Nonpharmaceutical Interventions, British Columbia, Canada.
- Author
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Chan YLE, Irvine MA, Prystajecky N, Sbihi H, Taylor M, Joffres Y, Schertzer A, Rose C, Dyson L, Hill EM, Tildesley M, Tyson JR, Hoang LMN, and Galanis E
- Subjects
- Humans, British Columbia epidemiology, Retrospective Studies, SARS-CoV-2 genetics, COVID-19 epidemiology, COVID-19 prevention & control
- Abstract
In British Columbia, Canada, initial growth of the SARS-CoV-2 Delta variant was slower than that reported in other jurisdictions. Delta became the dominant variant (>50% prevalence) within ≈7-13 weeks of first detection in regions within the United Kingdom and United States. In British Columbia, it remained at <10% of weekly incident COVID-19 cases for 13 weeks after first detection on March 21, 2021, eventually reaching dominance after 17 weeks. We describe the growth of Delta variant cases in British Columbia during March 1-June 30, 2021, and apply retrospective counterfactual modeling to examine factors for the initially low COVID-19 case rate after Delta introduction, such as vaccination coverage and nonpharmaceutical interventions. Growth of COVID-19 cases in the first 3 months after Delta emergence was likely limited in British Columbia because additional nonpharmaceutical interventions were implemented to reduce levels of contact at the end of March 2021, soon after variant emergence.
- Published
- 2023
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42. Design and optimization of a high-energy optical parametric amplifier for broadband, spectrally incoherent pulses.
- Author
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Ekanayake N, Spilatro M, Bolognesi A, Herman S, Sampat S, Hill EM, and Dorrer C
- Abstract
Spectrally incoherent laser pulses with sufficiently large fractional bandwidth are in demand for the mitigation of laser-plasma instabilities occurring in high-energy laser-target interactions. Here, we modeled, implemented, and optimized a dual-stage high-energy optical parametric amplifier for broadband, spectrally incoherent pulses in the near-infrared. The amplifier delivers close to 400 mJ of signal energy through noncollinear parametric interaction of 100-nJ-scale broadband, spectrally incoherent seed pulses near 1053 nm with a narrowband high-energy pump operating at 526.5 nm. Mitigation strategies for high-frequency spatial modulations in the amplified signal caused by index inhomogeneities in the Nd:YLF rods of the pump laser are explored and discussed in detail.
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- 2023
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43. An examination of health locus of control in relation to antibiotic resistance perceptions and antibiotic use behaviors among college students.
- Author
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Hill EM
- Abstract
Objective: The aim of the present study was to examine the role of health locus of control (HLOC; internal, chance, powerful others) in antibiotic resistance perceptions and antibiotic use behaviors among college students. Participants: Participants were 366 students recruited from the introductory psychology pool at a university in the northeastern United States. Methods: Participants completed the study via Qualtrics in 2015 (October-December). They completed the Multidimensional Health Locus of Control Scale (measuring internal, chance, powerful others HLOC) and questions about their antibiotic use and antibiotic resistance perceptions. Results: Linear regression analyses were employed to examine the role of the HLOC in antibiotic use behaviors and antibiotic resistance perceptions. With the exception of the regression with antibiotic resistance concern as an outcome, powerful others HLOC was the strongest predictor across all models. Conclusions: Antibiotic misuse was prevalent in our sample and powerful others HLOC was associated with problematic antibiotic use.
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- 2023
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44. Rheum-CoV-2 Vaccination Case Series.
- Author
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VanDerVeer SJ, Maier KD, and Hill EM
- Subjects
- Aged, Male, Humans, Female, RNA, Messenger, Vaccination, COVID-19, Rheum, Arthritis, Autoimmune Diseases, Rheumatic Diseases
- Abstract
Objectives: In this case series, we present 5 cases of autoimmune rheumatic disease onset shortly after receiving mRNA vaccination against coronavirus disease 2019 (COVID-19)., Methods: We identified 5 patients from Brooke Army Medical Center who developed new manifestations of rheumatic disease following the second dose of the Pfizer-BioNTech or Moderna COVID-19 vaccinations. All patients were initially seen in primary care and then referred to rheumatology for further evaluation and management. Clinical data were obtained through review of the electronic medical record., Results: Three cases involve elderly women with insidious onset of symmetric wrist and hand polyarthritis with seropositivity for rheumatoid factor. One case involves an elderly woman with a subacute onset of lower extremity-predominant, symmetric polyarthritis. One case involves an elderly man with insidious onset of bilateral shoulder and hip stiffness and arthralgias in the setting of elevated erythrocyte sedimentation rate and a rapid response to glucocorticoid therapy., Conclusion: Whether there exists a causal or contributory relationship between COVID-19 mRNA vaccination and the development of autoimmune rheumatic disease remains to be determined. Ultimately, further research is needed to establish if there is a true connection between the two., Competing Interests: The authors declare no conflict of interest., (Copyright © 2022 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2023
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45. Coughs, colds and "freshers' flu" survey in the University of Cambridge, 2007-2008.
- Author
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Eames KTD, Tang ML, Hill EM, Tildesley MJ, Read JM, Keeling MJ, and Gog JR
- Subjects
- Humans, Pandemics, Cough epidemiology, Influenza, Human epidemiology, Common Cold epidemiology, COVID-19 epidemiology
- Abstract
Universities provide many opportunities for the spread of infectious respiratory illnesses. Students are brought together into close proximity from all across the world and interact with one another in their accommodation, through lectures and small group teaching and in social settings. The COVID-19 global pandemic has highlighted the need for sufficient data to help determine which of these factors are important for infectious disease transmission in universities and hence control university morbidity as well as community spillover. We describe the data from a previously unpublished self-reported university survey of coughs, colds and influenza-like symptoms collected in Cambridge, UK, during winter 2007-2008. The online survey collected information on symptoms and socio-demographic, academic and lifestyle factors. There were 1076 responses, 97% from University of Cambridge students (5.7% of the total university student population), 3% from staff and <1% from other participants, reporting onset of symptoms between September 2007 and March 2008. Undergraduates are seen to report symptoms earlier in the term than postgraduates; differences in reported date of symptoms are also seen between subjects and accommodation types, although these descriptive results could be confounded by survey biases. Despite the historical and exploratory nature of the study, this is one of few recent detailed datasets of influenza-like infection in a university context and is especially valuable to share now to improve understanding of potential transmission dynamics in universities during the current COVID-19 pandemic., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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46. The impacts of SARS-CoV-2 vaccine dose separation and targeting on the COVID-19 epidemic in England.
- Author
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Keeling MJ, Moore S, Penman BS, and Hill EM
- Subjects
- Humans, COVID-19 Vaccines, SARS-CoV-2, England epidemiology, Vaccination, COVID-19 epidemiology, COVID-19 prevention & control, Epidemics prevention & control
- Abstract
In late 2020, the JCVI (the Joint Committee on Vaccination and Immunisation, which provides advice to the Department of Health and Social Care, England) made two important recommendations for the initial roll-out of the COVID-19 vaccine. The first was that vaccines should be targeted to older and vulnerable people, with the aim of maximally preventing disease rather than infection. The second was to increase the interval between first and second doses from 3 to 12 weeks. Here, we re-examine these recommendations through a mathematical model of SARS-CoV-2 infection in England. We show that targeting the most vulnerable had the biggest immediate impact (compared to targeting younger individuals who may be more responsible for transmission). The 12-week delay was also highly beneficial, estimated to have averted between 32-72 thousand hospital admissions and 4-9 thousand deaths over the first ten months of the campaign (December 2020-September 2021) depending on the assumed interaction between dose interval and efficacy., (© 2023. The Author(s).)
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- 2023
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47. Modelling the epidemiological implications for SARS-CoV-2 of Christmas household bubbles in England.
- Author
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Hill EM
- Subjects
- Humans, Pandemics, Contact Tracing methods, Family Characteristics, SARS-CoV-2, COVID-19 epidemiology
- Abstract
The emergence of SARS-CoV-2 saw severe detriments to public health being inflicted by COVID-19 disease throughout 2020. In the lead up to Christmas 2020, the UK Government sought an easement of social restrictions that would permit spending time with others over the Christmas period, whilst limiting the risk of spreading SARS-CoV-2. In November 2020, plans were published to allow individuals to socialise within 'Christmas bubbles' with friends and family. This policy involved a planned easing of restrictions in England between 23-27 December 2020, with Christmas bubbles allowing people from up to three households to meet throughout the holiday period. We estimated the epidemiological impact of both this and alternative bubble strategies that allowed extending contacts beyond the immediate household. We used a stochastic individual-based model for a synthetic population of 100,000 households, with demographic and SARS-CoV-2 epidemiological characteristics comparable to England as of November 2020. We evaluated five Christmas bubble scenarios for the period 23-27 December 2020, assuming our populations of households did not have symptomatic infection present and were not in isolation as the eased social restrictions began. Assessment comprised incidence and cumulative infection metrics. We tested the sensitivity of the results to a situation where it was possible for households to be in isolation at the beginning of the Christmas bubble period and also when there was lower adherence to testing, contact tracing and isolation interventions. We found that visiting family and friends over the holiday period for a shorter duration and in smaller groups was less risky than spending the entire five days together. The increases in infection from greater amounts of social mixing disproportionately impacted the eldest. We provide this account as an illustration of a real-time contribution of modelling insights to a scientific advisory group, the Scientific Pandemic Influenza Group on Modelling, Operational sub-group (SPI-M-O) for the Scientific Advisory Group for Emergencies (SAGE) in the UK, during the COVID-19 pandemic. This manuscript was submitted as part of a theme issue on "Modelling COVID-19 and Preparedness for Future Pandemics"., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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48. Retrospectively modeling the effects of increased global vaccine sharing on the COVID-19 pandemic.
- Author
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Moore S, Hill EM, Dyson L, Tildesley MJ, and Keeling MJ
- Subjects
- Humans, Pandemics prevention & control, SARS-CoV-2, COVID-19 Vaccines, Retrospective Studies, COVID-19 epidemiology, COVID-19 prevention & control, Viral Vaccines
- Abstract
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has caused considerable morbidity and mortality worldwide. The protection provided by vaccines and booster doses offered a method of mitigating severe clinical outcomes and mortality. However, by the end of 2021, the global distribution of vaccines was highly heterogeneous, with some countries gaining over 90% coverage in adults, whereas others reached less than 2%. In this study, we used an age-structured model of SARS-CoV-2 dynamics, matched to national data from 152 countries in 2021, to investigate the global impact of different potential vaccine sharing protocols that attempted to address this inequity. We quantified the effects of implemented vaccine rollout strategies on the spread of SARS-CoV-2, the subsequent global burden of disease and the emergence of novel variants. We found that greater vaccine sharing would have lowered the total global burden of disease, and any associated increases in infections in previously vaccine-rich countries could have been mitigated by reduced relaxation of non-pharmaceutical interventions. Our results reinforce the health message, pertinent to future pandemics, that vaccine distribution proportional to wealth, rather than to need, may be detrimental to all., (© 2022. The Author(s).)
- Published
- 2022
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49. Using the recommended summary plan for emergency care and treatment (ReSPECT) in care homes: a qualitative interview study.
- Author
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Kesten JM, Redwood S, Pullyblank A, Tavare A, Pocock L, Brant H, Hill EM, Tutaev M, Shum RZ, and Banks J
- Subjects
- Humans, Nursing Homes, Qualitative Research, Communication, Advance Care Planning, Emergency Medical Services
- Abstract
Background: The Recommended Summary Plan for Emergency Care and Treatment (ReSPECT) is an advance care planning process designed to facilitate discussion and documentation of preferences for care in a medical emergency. Advance care planning is important in residential and nursing homes., Aim: To explore the views and experiences of GPs and care home staff of the role of ReSPECT in: (i) supporting, and documenting, conversations about care home residents' preferences for emergency care situations, and (ii) supporting decision-making in clinical emergencies., Setting/participants: Sixteen GPs providing clinical care for care home residents and 11 care home staff in the West of England., Methods: A qualitative research design using semi-structured interviews., Results: Participants' accounts described the ReSPECT process as facilitating person-centred conversations about residents' preferences for care in emergency situations. The creation of personalised scenarios supported residents to consider their preferences. However, using ReSPECT was complex, requiring interactional work to identify and incorporate resident or relative preferences. Subsequent translation of preferences into action during emergency situations also proved difficult in some cases. Care staff played an important role in facilitating and supporting ReSPECT conversations and in translating it into action., Conclusions: The ReSPECT process in care homes was positive for GPs and care home staff. We highlight challenges with the process, communication of preferences in emergency situations and the importance of balancing detail with clarity. This study highlights the potential for a multi-disciplinary approach engaging care staff more in the process., (© The Author(s) 2022. Published by Oxford University Press on behalf of the British Geriatrics Society.)
- Published
- 2022
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50. Descriptive analysis of national bovine viral diarrhoea test data in England (2016-2020).
- Author
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Prosser NS, Hill EM, Armstrong D, Gow L, Tildesley MJ, Keeling MJ, Kaler J, Ferguson E, and Green MJ
- Subjects
- Animals, Antibodies, Viral, Cattle, Diarrhea veterinary, England epidemiology, Bovine Virus Diarrhea-Mucosal Disease diagnosis, Bovine Virus Diarrhea-Mucosal Disease epidemiology, Bovine Virus Diarrhea-Mucosal Disease prevention & control, Cattle Diseases, Diarrhea Viruses, Bovine Viral
- Abstract
Background: Bovine viral diarrhoea virus (BVDV) causes substantial economic losses to the cattle industry; however, control and eradication can be achieved by identifying and removing persistently infected cattle from the herd. Each UK nation has separate control programmes. The English scheme, BVDFree, started in 2016 and is voluntary., Methods: We analysed the test results submitted to BVDFree from 5847 herds between 2016 and 2020., Results: In 2020, 13.5% of beef breeders and 20.0% of dairy herds that submitted tests had at least one positive (virus/antibody) test result. Although lower than in previous years, there was no clear trend in the proportion of positive tests over time. In virus testing herds, 0.4% of individual tests were positive in 2020, and 1.5% of individual tests were positive in BVDV-positive virus testing herds. Dairy herds and larger herds were more likely to join BVDFree, and dairy herds were also more likely to virus test than beef breeder herds. Larger herds, herds that used virus testing and herds that had BVDV-positive test results were more likely to continue submitting tests to BVDFree., Conclusions: The findings provide a benchmark for the status of BVDV control in England; continued analysis of test results will be important to assess progress towards eradication., (© 2022 The Authors. Veterinary Record published by John Wiley & Sons Ltd on behalf of British Veterinary Association.)
- Published
- 2022
- Full Text
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