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Understanding and managing the response of marine ecosystems to human pressures including climate change requires reliable large-scale and multi-decadal information on the state of key populations. These populations include the pelagic animals that support ecosystem services including carbon export and fisheries. The use of research vessels to collect information using scientific nets and acoustics is being replaced with technologies such as autonomous moorings, gliders, and meta-genetics. Paradoxically, these newer methods sample pelagic populations at ever-smaller spatial scales, and ecological change might go undetected in the time needed to build up large-scale, long time series. These global-scale issues are epitomised by Antarctic krill (Euphausia superba), which is concentrated in rapidly warming areas, exports substantial quantities of carbon and supports an expanding fishery, but opinion is divided on how resilient their stocks are to climatic change. Based on a workshop of 137 krill experts we identify the challenges of observing climate change impacts with shifting sampling methods and suggest three tractable solutions. These are to: improve overlap and calibration of new with traditional methods; improve communication to harmonise, link and scale up the capacity of new but localised sampling programs; and expand opportunities from other research platforms and data sources, including the fishing industry. Contrasting evidence for both change and stability in krill stocks illustrates how the risks of false negative and false positive diagnoses of change are related to the temporal and spatial scale of sampling. Given the uncertainty about how krill are responding to rapid warming we recommend a shift towards a fishery management approach that prioritises monitoring of stock status and can adapt to variability and change.

Understanding and managing the response of marine ecosystems to human pressures including climate change requires reliable large-scale and multi-decadal information on the state of key populations. These populations include the pelagic animals that support ecosystem services including carbon export and fisheries. The use of research vessels to collect information using scientific nets and acoustics is being replaced with technologies such as autonomous moorings, gliders, and meta-genetics. Paradoxically, these newer methods sample pelagic populations at ever-smaller spatial scales, and ecological change might go undetected in the time needed to build up large-scale, long time series. These global-scale issues are epitomised by Antarctic krill (Euphausia superba), which is concentrated in rapidly warming areas, exports substantial quantities of carbon and supports an expanding fishery, but opinion is divided on how resilient their stocks are to climatic change. Based on a workshop of 137 krill experts we identify the challenges of observing climate change impacts with shifting sampling methods and suggest three tractable solutions. These are to: improve overlap and calibration of new with traditional methods; improve communication to harmonise, link and scale up the capacity of new but localised sampling programs; and expand opportunities from other research platforms and data sources, including the fishing industry. Contrasting evidence for both change and stability in krill stocks illustrates how the risks of false negative and false positive diagnoses of change are related to the temporal and spatial scale of sampling. Given the uncertainty about how krill are responding to rapid warming we recommend a shift towards a fishery management approach that prioritises monitoring of stock status and can adapt to variability and change.

A primary response of many marine ectotherms to warming is a reduction in body size, to lower the metabolic costs associated with higher temperatures. The impact of such changes on ecosystem dynamics and stability will depend on the resulting changes to community size-structure, but few studies have investigated how temperature affects the relative size of predators and their prey in natural systems. We utilise >3700 prey size measurements from ten Southern Ocean lanternfish species sampled across >10° of latitude to investigate how temperature influences predator-prey size relationships and size-selective feeding. As temperature increased, we show that predators became closer in size to their prey, which was primarily associated with a decline in predator size and an increase in the relative abundance of intermediate-sized prey. The potential implications of these changes include reduced top-down control of prey populations and a reduction in the diversity of predator-prey interactions. Both of these factors could reduce the stability of community dynamics and ecosystem resistance to perturbations under ocean warming.

The fish community of the Scotia Sea is diverse and plays key roles in Antarctic food webs and biogeochemical cycling. However, knowledge of the spatial and community structure of their early life stages is limited, particularly in the region surrounding the South Orkney Islands. Here we examine the structure of the early life stage fish community in the epipelagic using data from a basin-scale survey conducted in early 2019, which sampled the top 200 m of the water column. 347 early life stage fish from 19 genera were caught in 58 hauls. A third of all specimens belonged to the genus Notolepis and the nine most common genera comprised over 90% of specimens. Cluster analysis revealed five distinct groupings, the most common were a group dominated by pelagic and shelf slope genera (Notolepis, Muraenolepis and Electrona) found mainly in oceanic waters (depth ≥ 1000 m), and a group dominated by species with demersal or benthopelagic adults (Chionodraco, Chaenocephalus and Nototheniops) found mainly in shelf waters. Bottom depth was the main environmental determinant of community structure, separating the diverse on-shelf assemblage at the South Orkneys from the less species-rich community of widespread oceanic taxa. Our results indicate the highest diversities of early life stages of endemic fish occur on the shelf and near-shelf areas. Dedicated monitoring is recommended to understand the seasonal differences in larval community assemblages and the implications of early life stages fish bycatch within the krill fishery.

Krill habitats in the Southern Ocean are impacted by changing climate conditions, reduced sea ice and rising temperatures. These changes, in turn, affect krill occurrence, physiology and behaviour, which could have ecosystem impacts. In this Review, we examine climate change impacts on Antarctic krill and the potential implications for the Southern Ocean ecosystem. Since the 1970s, there have been apparent reductions in adult population density and the occurrence of very dense swarms in the northern Southwest Atlantic. These changes were associated with latitudinal and longitudinal rearrangement of population distribution — including a poleward contraction in the Southwest Atlantic — and were likely driven by ocean warming, sea-ice reductions and changes in the quality of larval habitats. As swarms are targeted by fishers and predators, this contraction could increase fishery–predator interactions, potentially exacerbating risk to already declining penguin populations and recovering whale populations. These risks require urgent mitigation measures to be developed. A circumpolar monitoring network using emerging technologies is needed to augment existing surveys and better record the shifts in krill distribution.

Food web interactions govern how ecosystems respond to climate change and biodiversity loss. Modularity, where subgroups of species interact more often with each other than with species outside their subgroup, is a key structural feature which has been linked to food web stability. We sought to address the lack of understanding of how modularity varies among ecosystems by comparing the structure of four highly resolved marine food webs and the importance of functional traits for predicting module membership. Modules in two offshore networks were partitioned largely by trophic level, creating an interdependence among them, whereas modules in two semi-enclosed bays were generally separated into energy channels with less trophic separation and containing distinct basal resources, providing greater redundancy in the flow of energy through the network. Foraging habitat and mobility predicted module membership in all networks, whilst body mass and foraging strategy also differentiated modules in the offshore and bay ecosystems, respectively. Environmental heterogeneity may be a key factor driving the differences in modularity and the relative importance of functional traits for predicting module membership. Our results indicate that, in addition to overall network modularity, the trophic structure of modules within food webs should be considered when making inferences about ecosystem stability.

In the Southern Ocean, several zooplankton taxonomic groups, euphausiids, copepods, salps and pteropods, are notable because of their biomass and abundance and their roles in maintaining food webs and ecosystem structure and function, including the provision of globally important ecosystem services. These groups are consumers of microbes, primary and secondary producers, and are prey for fishes, cephalopods, seabirds, and marine mammals. In providing the link between microbes, primary production, and higher trophic levels these taxa influence energy flows, biological production and biomass, biogeochemical cycles, carbon flux and food web interactions thereby modulating the structure and functioning of ecosystems. Additionally, Antarctic krill (Euphausia superba) and various fish species are harvested by international fisheries. Global and local drivers of change are expected to affect the dynamics of key zooplankton species, which may have potentially profound and wide-ranging implications for Southern Ocean ecosystems and the services they provide. Here we assess the current understanding of the dominant metazoan zooplankton within the Southern Ocean, including Antarctic krill and other key euphausiid, copepod, salp and pteropod species. We provide a systematic overview of observed and potential future responses of these taxa to a changing Southern Ocean and the functional relationships by which drivers may impact them. To support future ecosystem assessments and conservation and management strategies, we also identify priorities for Southern Ocean zooplankton research.

Whole-animal, in vivo protein metabolism rates have been reported in temperate and tropical, but not Antarctic fish. Growth in Antarctic species is generally slower than lower latitude species. Protein metabolism data for Antarctic invertebrates show low rates of protein synthesis and unusually high rates of protein degradation. Additionally, in Antarctic fish, increasing evidence suggests a lower frequency of successful folding of nascent proteins and reduced protein stability. This study reports the first whole-animal protein metabolism data for an Antarctic fish. Groups of Antarctic, Harpagifer antarcticus, and temperate, Lipophrys pholis, fish were acclimatized to a range of overlapping water temperatures and food consumption, whole-animal growth and protein metabolism measured. The rates of protein synthesis and growth in Antarctic, but not temperate fish, were relatively insensitive to temperature and were significantly lower in H. antarcticus at 3°C than in L. pholis. Protein degradation was independent of temperature in H. antarcticus and not significantly different to L. pholis at 3°C, while protein synthesis retention efficiency was significantly higher in L. pholis than H. antarcticus at 3°C. These results suggest Antarctic fish degrade a significantly larger proportion of synthesized protein than temperate fish, with fundamental energetic implications for growth at low temperatures.

Poleward range shifts are a global-scale response to warming, but these vary greatly among taxa and are hard to predict for individual species, localized regions or over shorter (years to decadal) timescales. Moving poleward might be easier in the Arctic than in the Southern Ocean, where evidence for range shifts is sparse and contradictory. Here, we compiled a database of larval Antarctic krill, Euphausia superba and, together with an adult database, it showed how their range shift is out of step with the pace of warming. During a 70-year period of rapid warming (1920s–1990s), distribution centres of both larvae and adults in the SW Atlantic sector remained fixed, despite warming by 0.5–1.0°C and losing sea ice. This was followed by a hiatus in surface warming and ice loss, yet during this period the distributions of krill life stages shifted greatly, by ~1000 km, to the south-west. Understanding the mechanism of such step changes is essential, since they herald system reorganizations that are hard to predict with current modelling approaches. We propose that the abrupt shift was driven by climatic controls acting on localized recruitment hotspots, superimposed on thermal niche conservatism. During the warming hiatus, the Southern Annular Mode index continued to become increasingly positive and, likely through reduced feeding success for larvae, this led to a precipitous decline in recruitment from the main reproduction hotspot along the southern Scotia Arc. This cut replenishment to the northern portion of the krill stock, as evidenced by declining density and swarm frequency. Concomitantly, a new, southern reproduction area developed after the 1990s, reinforcing the range shift despite the lack of surface warming. New spawning hotspots may provide the stepping stones needed for range shifts into polar regions, so planning of climate-ready marine protected areas should include these key areas of future habitat.

Plankton drive a major sink of carbon across the global oceans. Dead plankton, their faeces and the faeces of plankton feeders, form a huge rain of carbon sinking to the seabed and deep ocean, reducing atmospheric CO2 levels and thus helping to regulate the climate. Any change in plankton communities, ecosystems or habitats will perturb this carbon sink, potentially increasing atmospheric CO2. Fishing is a major cause of ocean ecosystem disturbance affecting all trophic levels including plankton, but its potential impact on the carbon sink is unknown. As both fisheries and the carbon sink depend on plankton, there is spatial overlap of these fundamental ecosystem services. Here, we provide the first global maps of this spatial overlap. Using an upper quartile analysis, we show that 21% of the total upper ocean carbon sink (export) and 39% of fishing effort globally are concentrated in zones of intensive overlap, representing 9% of the ocean surface area. This overlap is particularly evident in the Northeast Atlantic suggesting this region should be prioritized in terms of research and conservation measures to preserve the high levels of sinking carbon. Small pelagic fish dominate catches here and globally, and their exploitation could reduce important faecal pellet carbon sinks and cause trophic cascades affecting plankton communities. There is an urgent need to recognize that, alongside climate change, fishing might be a critical influence on the ability of the ocean to sequester atmospheric CO2. Improved understanding of this influence, and how it will change with the climate, will be important for realizing a sustainable balance of the twin needs for productive fisheries and strong carbon sinks.

With rapid, sector-specific climatic changes impacting the Southern Ocean, we need circumpolar-scale biomass data of its plankton taxa to improve food web models, blue carbon budgets and resource management. Here, we provide a new dataset on mesozooplankton biomass with 2909 records spanning the last 90 yr, and describe, in comparable carbon units, their circumpolar distribution alongside those of phytoplankton, Antarctic krill, and salps. With our datasets, we estimate total summer carbon biomasses for phytoplankton (36 MT), mesozooplankton (67 MT), krill (30 MT), and salps (1.7 MT). The mesozooplankton value is much higher than previously reported and, added to that of krill and salps, points to an enormous overall biomass of zooplankton in the Southern Ocean. This means that the pyramids of biomass are often inverted, with higher biomass of zooplankton than of phytoplankton. Such high biomasses suggest key roles of grazers in nutrient cycling and we estimate an export of ~ 50 Mt C yr−1, solely from mortality of overwintering zooplankton that typically reside at depth. Deep lipid respiration (the lipid pump), for example, would increase this export even further. While inverted biomass pyramids prevailed at mid latitudes (50°–70°S), the balance of taxa differed regionally: for example, with biomass dominance by phytoplankton (highest latitudes and Pacific sector), mesozooplankton (Kerguelen Plateau), krill (north and east Scotia Sea), and salps (Crozet area). In light of contrasting climate change impacts between these sectors, we provide data that will underpin biogeochemical and food web models, blue carbon budgets, and the planning of marine protected areas.