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Adsorption of CO at the Sr$_3$Ru$_2$O$_7$(001) surface was studied with low-temperature scanning tunneling microscopy (STM) and density functional theory. In situ cleaved single crystals terminate in an almost perfect SrO surface. At 78 K, CO first populates impurities and then adsorbs above the apical surface O with a binding energy E$_\mathrm{ads}$=-0.7 eV. Above 100 K, this physisorbed CO replaces the surface O, forming a bent CO2 with the C end bound to the Ru underneath. The resulting metal carboxylate (Ru-COO) can be desorbed by STM manipulation. A low activation (0.2 eV) and high binding (-2.2 eV) energy confirm a strong reaction between CO and regular surface sites of Sr$_3$Ru$_2$O$_7$; likely, this reaction causes the "UHV aging effect" reported for this and other perovskite oxides.

The (001) surfaces of cleaved Sr$_3$Ru$_2$O$_7$ and Sr$_2$RuO$_4$ samples were investigated using low-temperature scanning tunneling microscopy and density functional theory calculations. Intrinsic defects are not created during cleaving. This experimental observation is consistent with calculations, where the formation energy for a Sr and O vacancy, 4.19 eV and 3.81 eV, respectively, is significantly larger than that required to cleave the crystal, 1.11 eV/(1 $\times$ 1) unit cell. Surface oxygen vacancies can be created through electron bombardment, however, and their appearance is shown to vary strongly with the imaging conditions. Point defects observed on as-cleaved surfaces result from bulk impurities and adsorption from the residual gas.