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Migratory birds face diverse threats during migration. Critical stopover sites (CSSs) are essential refueling and resting sites for migratory birds that ensure their complete migration and survival. Therefore, identifying bird migration patterns, routes, and critical habitats is vital for conservation. From 2018–2022, we deployed satellite tracking devices on 30 Bewick’s swans (Cygnus columbianus bewickii) wintering in China to determine their migration routes. Using a dynamic Brownian bridge movement model, we identified migration corridors, core movement areas, and CSSs for Bewick’s swans. Combining protected area databases and human settlement types, we further assessed the swans’ conservation status and human impacts on CSSs. The results showed that Bewick’s swans migrated north from their wintering grounds using one of three routes (west, middle, and east), passing through Mongolia to reach the Russian Arctic (breeding grounds) in spring. They followed similar routes during autumn to return to wintering grounds. We found a new middle route within the East Asian–Australasian Flyway (EAAF) and several northward expanded wintering sites. Our study revealed similarities and differences in the spring and autumn migrations, with longer stopover durations in spring due to migration strategies and ice conditions. Moreover, our findings identified the Inner Mongolia region, the Songnen Plain, the Bohai Rim of China, and the main streams of the Lena River and the Ob River of Russia as CSSs for Bewick’s swans. However, the conservation status of the CSSs was relatively low; and the situation was more severe in spring than in autumn, only 4.3% of the total area was protected, likely due to the distribution of farmland and urban areas. Specifically, 14.3% of the CSSs in China were in urban areas during spring, while in Mongolia and Russia this figure was less than 1%. Therefore, it is necessary to balance waterbird conservation with sustainable agriculture and urban development. This research contributes to our understanding of the migratory ecology of Bewick’s swans wintering in China. The identified migration corridors and CSSs are crucial for the future conservation of swans along the EAAF.

Highly pathogenic influenza A(H5N8) viruses have caused several worldwide outbreaks in birds and are able cross the species barrier to infect humans, posing a substantial threat to public health. After the first detection of H5N8 viruses in deceased swans in Inner Mongolia, we performed early warning and active monitoring along swan migration routes in central China. We isolated and sequenced 42 avian influenza viruses, including 40 H5N8 viruses, 1 H5N2 virus, and 1 H9N2 virus, in central China. Our H5N8 viruses isolated in swan stopover sites and wintering grounds showed high nucleotide homologies in the whole genome, revealing a common evolutionary source. Phylogenetic analysis revealed that the H5 viruses of clade 2.3.4.4b prevalent in 2020 have further diverged into two sub-clades: b1 and b2. The phylogeographic analysis also showed that the viruses of sub-clade b2 most likely originated from poultry in Russia. Notably, whooper swans were found to be responsible for the introduction of sub-clade b2 viruses in central China; whooper and tundra swans play a role in viral spread in the Yellow River Basin and the Yangtze River Basin, respectively. Our findings highlight swans as an indicator species for transborder spreading and monitoring of the H5N8 virus.

ABSTRACT Six highly pathogenic avian influenza (HPAI) H5N1 viruses (clade 2.3.4.4b) were detected in migratory birds in Hubei Province in November 2021. Phylogenetic analysis indicated that the viruses in the study included two different reassortants between H5N1 viruses that were circulating in Eurasia and low-pathogenic avian influenza viruses (LPAIVs). Several amino acid substitutions that contributed to the enhanced replication or virulence in mammals were observed in these viruses, suggesting a potential threat of the H5N1 viruses to human health. IMPORTANCE Here, we obtained the whole-genomes of six H5N1 viruses from dead or rescued wild birds in Hubei Province. These viruses were divided into two genotypes and had different evolutionary trajectories from previously reported H5N1 viruses in China. Extensive reassortment events between high-pathogenic (HP) and low-pathogenic (LP) avian influenza viruses (AIVs) were observed in these viruses. Moreover, a key amino acid analysis also suggests a potential threat of H5N1 viruses to public health. Our work explored the prevalent patterns of H5N1 viruses in wild birds and replenished the viral population data of H5N1 viruses in central China.

Eleven highly pathogenic avian influenza H5N8 viruses (clade 2.3.4.4b) were detected in migratory birds in Central China between November and December 2020, which were highly homologous to strains isolated in Europe from October to December 2020. Phylogenetic analysis indicated that the strains in the study possibly spread from Siberia by migratory birds. In this study, we found H5N8 virus infection in migratory birds could cause severe pathological damage and high viral load in multiple organs.

In December 2017, an influenza A(H9N2) virus (B51) was isolated from migratory waterfowl in Hubei Province, China. Phylogenetic analysis demonstrated that B51 is a novel reassortant influenza virus containing segments from human H7N4 virus and North American wild bird influenza viruses. This suggest that B51 has undergone multiple reassortment events.