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1. Correction to: Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A, Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris GC, Vargas Jentzsch, Iris M, Oliver, Jonathan E, Poelchau, Monica F, Rajarapu, Swapna Priya, Schneweis, Derek J, Snoeck, Simon, Taning, Clauvis NT, Wei, Dong, Widana Gamage, Shirani MK, Hughes, Daniel ST, Murali, Shwetha C, Bailey, Samuel T, Bejerman, Nicolas E, Holmes, Christopher J, Jennings, Emily C, Rosendale, Andrew J, Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A, Cheng, Sammy, Childers, Christopher, Simão, Felipe A, Dietzgen, Ralf G, Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L, Muzny, Donna M, Qu, Jiaxin, Worley, Kim C, Benoit, Joshua B, Friedrich, Markus, Jones, Jeffery W, Panfilio, Kristen A, Park, Yoonseong, Robertson, Hugh M, Smagghe, Guy, Ullman, Diane E, van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A, Waterhouse, Robert M, Weirauch, Matthew T, Werren, John H, Whitfield, Anna E, Zdobnov, Evgeny M, Gibbs, Richard A, and Richards, Stephen

Subjects
Biological Sciences, Developmental Biology, Biological sciences
Abstract

An amendment to this paper has been published and can be accessed via the original article.

Published
2020

2. Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A, Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris GC, Vargas Jentzsch, Iris M, Oliver, Jonathan E, Poelchau, Monica F, Rajarapu, Swapna Priya, Schneweis, Derek J, Snoeck, Simon, Taning, Clauvis NT, Wei, Dong, Widana Gamage, Shirani MK, Hughes, Daniel ST, Murali, Shwetha C, Bailey, Samuel T, Bejerman, Nicolas E, Holmes, Christopher J, Jennings, Emily C, Rosendale, Andrew J, Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A, Cheng, Sammy, Childers, Christopher, Simão, Felipe A, Dietzgen, Ralf G, Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L, Muzny, Donna M, Qu, Jiaxin, Worley, Kim C, Benoit, Joshua B, Friedrich, Markus, Jones, Jeffery W, Panfilio, Kristen A, Park, Yoonseong, Robertson, Hugh M, Smagghe, Guy, Ullman, Diane E, van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A, Waterhouse, Robert M, Weirauch, Matthew T, Werren, John H, Whitfield, Anna E, Zdobnov, Evgeny M, Gibbs, Richard A, and Richards, Stephen

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, Biotechnology, Animals, Crops, Agricultural, Feeding Behavior, Food Chain, Genome, Insect, Immunity, Innate, Life History Traits, Perception, Phylogeny, Reproduction, Thysanoptera, Transcriptome, Western flower thrips, Hemipteroid assemblage, Insect genomics, Tospovirus, Salivary glands, Chemosensory receptors, Opsins, Detoxification, Innate immunity, Developmental Biology, Biological sciences
Abstract

BackgroundThe western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber, and ornamental crops. The underlying genetic mechanisms of the processes governing thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance are largely unknown. To address this gap, we present the F. occidentalis draft genome assembly and official gene set.ResultsWe report on the first genome sequence for any member of the insect order Thysanoptera. Benchmarking Universal Single-Copy Ortholog (BUSCO) assessments of the genome assembly (size = 415.8 Mb, scaffold N50 = 948.9 kb) revealed a relatively complete and well-annotated assembly in comparison to other insect genomes. The genome is unusually GC-rich (50%) compared to other insect genomes to date. The official gene set (OGS v1.0) contains 16,859 genes, of which ~ 10% were manually verified and corrected by our consortium. We focused on manual annotation, phylogenetic, and expression evidence analyses for gene sets centered on primary themes in the life histories and activities of plant-colonizing insects. Highlights include the following: (1) divergent clades and large expansions in genes associated with environmental sensing (chemosensory receptors) and detoxification (CYP4, CYP6, and CCE enzymes) of substances encountered in agricultural environments; (2) a comprehensive set of salivary gland genes supported by enriched expression; (3) apparent absence of members of the IMD innate immune defense pathway; and (4) developmental- and sex-specific expression analyses of genes associated with progression from larvae to adulthood through neometaboly, a distinct form of maturation differing from either incomplete or complete metamorphosis in the Insecta.ConclusionsAnalysis of the F. occidentalis genome offers insights into the polyphagous behavior of this insect pest that finds, colonizes, and survives on a widely diverse array of plants. The genomic resources presented here enable a more complete analysis of insect evolution and biology, providing a missing taxon for contemporary insect genomics-based analyses. Our study also offers a genomic benchmark for molecular and evolutionary investigations of other Thysanoptera species.

Published
2020

3. Outbreaks of Acute Gastrointestinal Illness Associated with a Splash Pad in a Wildlife Park--Kansas, June 2021

Author

Aluko, Samaria K., Ishrati, Syed S., Walker, David C., Mattioli, Mia C., Kahler, Amy M., Esschert, Kayla L. Vanden, Hervey, Kaylee, Rokisky, Justin, Jr., Wikswo, Mary E., Laco, Joseph P., Kurlekar, Sonalli, Byrne, Adrienne, Molinari, Noelle-Angelique, Gleason, Michelle E., Steward, Christine, Hlavsa, Michele C., and Neises, Daniel

Subjects
Government regulation, Health
Abstract

In June 2021, Kansas state and county public health officials identified and investigated three cases of shigellosis (a bacterial diarrheal illness caused by Shigella spp.) associated with visiting a wildlife [...]

Published
2022

4. Additional file 4 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 4. Chemosensory receptor sequences.

Published
2020
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5. Additional file 7 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 7. Complete ATP-binding cassette transporter (ABC) and carboxylesterase sequences.

Published
2020
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6. Additional file 1 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 1. Supplementary notes, figures and small tables.

Published
2020
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7. Additional file 6 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Subjects
enzymes and coenzymes (carbohydrates), organic chemicals, heterocyclic compounds, respiratory system, urologic and male genital diseases
Abstract

Additional file 6. Complete and partial cytochrome p450 (CYP) sequences.

Published
2020
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8. Additional file 5 of Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, Baumann, Aaron A., Sulley Ben-Mahmoud, Christiaens, Olivier, Wannes Dermauw, Ioannidis, Panagiotis, Jacobs, Chris G. C., Jentzsch, Iris M. Vargas, Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Clauvis N. T. Taning, Wei, Dong, Shirani M. K. Widana Gamage, Hughes, Daniel S. T., Shwetha C. Murali, Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Hsu Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Jiaxin Qu, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Yoonseong Park, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., Maurijn Van Der Zee, Leeuwen, Thomas Van, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., and Richards, Stephen

Abstract

Additional file 5. Neuropeptide and protein hormone peptide sequences with highlighted features.

Published
2020
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9. Genome-enabled insights into the biology of thrips as crop pests

Author

Rotenberg, Dorith, primary, Baumann, Aaron A., additional, Ben-Mahmoud, Sulley, additional, Christiaens, Olivier, additional, Dermauw, Wannes, additional, Ioannidis, Panagiotis, additional, Jacobs, Chris G.C., additional, Vargas Jentzsch, Iris M., additional, Oliver, Jonathan E., additional, Poelchau, Monica F., additional, Rajarapu, Swapna Priya, additional, Schneweis, Derek J., additional, Snoeck, Simon, additional, Taning, Clauvis N.T., additional, Wei, Dong, additional, Widana-Gamage, Shirani M. K., additional, Hughes, Daniel S.T., additional, Murali, Shwetha C., additional, Bailey, Sam, additional, Bejerman, Nicolas E., additional, Holmes, Christopher J, additional, Jennings, Emily C., additional, Rosendale, Andrew J., additional, Rosselot, Andrew, additional, Hervey, Kaylee, additional, Schneweis, Brandi A., additional, Cheng, Sammy, additional, Childers, Christopher, additional, Simão, Felipe A., additional, Dietzgen, Ralf G., additional, Chao, Hsu, additional, Dinh, Huyen, additional, Doddapaneni, HarshaVardhan, additional, Dugan, Shannon, additional, Han, Yi, additional, Lee, Sandra L., additional, Muzny, Donna M., additional, Qu, Jiaxin, additional, Worley, Kim C., additional, Benoit, Joshua B., additional, Friedrich, Markus, additional, Jones, Jeffery W., additional, Panfilio, Kristen A., additional, Park, Yoonseong, additional, Robertson, Hugh M., additional, Smagghe, Guy, additional, Ullman, Diane E., additional, van der Zee, Maurijn, additional, Van Leeuwen, Thomas, additional, Veenstra, Jan A., additional, Waterhouse, Robert M., additional, Weirauch, Matthew T., additional, Werren, John H., additional, Whitfield, Anna E., additional, Zdobnov, Evgeny M., additional, Gibbs, Richard A., additional, and Richards, Stephen, additional

Published
2020
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12. Outbreaks of Acute Gastrointestinal Illness Associated with a Splash Pad in a Wildlife Park - Kansas, June 2021.

Author

Aluko SK, Ishrati SS, Walker DC, Mattioli MC, Kahler AM, Vanden Esschert KL, Hervey K, Rokisky J Jr, Wikswo ME, Laco JP, Kurlekar S, Byrne A, Molinari NA, Gleason ME, Steward C, Hlavsa MC, and Neises D

Subjects
Animals, Case-Control Studies, Disease Outbreaks, Humans, Kansas epidemiology, Water, Water Microbiology, Animals, Wild, Dysentery, Bacillary
Abstract

In June 2021, Kansas state and county public health officials identified and investigated three cases of shigellosis (a bacterial diarrheal illness caused by Shigella spp.) associated with visiting a wildlife park. The park has animal exhibits and a splash pad. Two affected persons visited animal exhibits, and all three entered the splash pad. Nonhuman primates are the only known animal reservoir of Shigella. The splash pad, which sprays water on users and is designed so that water does not collect in the user area, was closed on June 19. The state and county public health codes do not include regulations for splash pads. Thus, these venues are not typically inspected, and environmental health expertise is limited. A case-control study identified two distinct outbreaks associated with the park (a shigellosis outbreak involving 21 cases and a subsequent norovirus infection outbreak involving six cases). Shigella and norovirus can be transmitted by contaminated water; in both outbreaks, illness was associated with getting splash pad water in the mouth (multiply imputed adjusted odds ratio [aOR MI ] = 6.4, p = 0.036; and 28.6, p = 0.006, respectively). Maintaining adequate water disinfection and environmental health expertise and targeting prevention efforts to caregivers of splash pad users help prevent splash pad-associated outbreaks. Outbreak incidence might be further reduced when U.S. jurisdicitons voluntarily adopt CDC's Model Aquatic Health Code (MAHC) recommendations and through the prevention messages: "Don't get in the water if sick with diarrhea," "Don't stand or sit above the jets," and "Don't swallow the water." † ., Competing Interests: All authors have completed and submitted the International Committee of Medical Journal Editors form for disclosure of potential conflicts of interest. No potential conflicts of interest were disclosed.

Published
2022
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