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The early detection of glaucoma is essential in preventing visual impairment. Artificial intelligence (AI) can be used to analyze color fundus photographs (CFPs) in a cost-effective manner, making glaucoma screening more accessible. While AI models for glaucoma screening from CFPs have shown promising results in laboratory settings, their performance decreases significantly in real-world scenarios due to the presence of out-of-distribution and low-quality images. To address this issue, we propose the Artificial Intelligence for Robust Glaucoma Screening (AIROGS) challenge. This challenge includes a large dataset of around 113,000 images from about 60,000 patients and 500 different screening centers, and encourages the development of algorithms that are robust to ungradable and unexpected input data. We evaluated solutions from 14 teams in this paper, and found that the best teams performed similarly to a set of 20 expert ophthalmologists and optometrists. The highest-scoring team achieved an area under the receiver operating characteristic curve of 0.99 (95% CI: 0.98-0.99) for detecting ungradable images on-the-fly. Additionally, many of the algorithms showed robust performance when tested on three other publicly available datasets. These results demonstrate the feasibility of robust AI-enabled glaucoma screening., Comment: 19 pages, 8 figures, 3 tables

In this paper we describe the mathematical foundations of a new approach to semi-supervised Machine Learning. Using techniques of Symbolic Computation and Computer Algebra, we apply the concept of persistent homology to obtain a new semi-supervised learning method., Comment: In Proceedings of XVII Encuentro \'algebra computacional y aplicaciones (EACA 2022). arXiv admin note: text overlap with arXiv:2205.09617

Myocarditis is a significant cardiovascular disease (CVD) that poses a threat to the health of many individuals by causing damage to the myocardium. The occurrence of microbes and viruses, including the likes of HIV, plays a crucial role in the development of myocarditis disease (MCD). The images produced during cardiac magnetic resonance imaging (CMRI) scans are low contrast, which can make it challenging to diagnose cardiovascular diseases. In other hand, checking numerous CMRI slices for each CVD patient can be a challenging task for medical doctors. To overcome the existing challenges, researchers have suggested the use of artificial intelligence (AI)-based computer-aided diagnosis systems (CADS). The presented paper outlines a CADS for the detection of MCD from CMR images, utilizing deep learning (DL) methods. The proposed CADS consists of several steps, including dataset, preprocessing, feature extraction, classification, and post-processing. First, the Z-Alizadeh dataset was selected for the experiments. Subsequently, the CMR images underwent various preprocessing steps, including denoising, resizing, as well as data augmentation (DA) via CutMix and MixUp techniques. In the following, the most current deep pre-trained and transformer models are used for feature extraction and classification on the CMR images. The findings of our study reveal that transformer models exhibit superior performance in detecting MCD as opposed to pre-trained architectures. In terms of DL architectures, the Turbulence Neural Transformer (TNT) model exhibited impressive accuracy, reaching 99.73% utilizing a 10-fold cross-validation approach. Additionally, to pinpoint areas of suspicion for MCD in CMRI images, the Explainable-based Grad Cam method was employed.

Nowadays, Machine Learning and Deep Learning methods have become the state-of-the-art approach to solve data classification tasks. In order to use those methods, it is necessary to acquire and label a considerable amount of data; however, this is not straightforward in some fields, since data annotation is time consuming and might require expert knowledge. This challenge can be tackled by means of semi-supervised learning methods that take advantage of both labelled and unlabelled data. In this work, we present new semi-supervised learning methods based on techniques from Topological Data Analysis (TDA), a field that is gaining importance for analysing large amounts of data with high variety and dimensionality. In particular, we have created two semi-supervised learning methods following two different topological approaches. In the former, we have used a homological approach that consists in studying the persistence diagrams associated with the data using the Bottleneck and Wasserstein distances. In the latter, we have taken into account the connectivity of the data. In addition, we have carried out a thorough analysis of the developed methods using 3 synthetic datasets, 5 structured datasets, and 2 datasets of images. The results show that the semi-supervised methods developed in this work outperform both the results obtained with models trained with only manually labelled data, and those obtained with classical semi-supervised learning methods, reaching improvements of up to a 16%.

The development of mobile and on the edge applications that embed deep convolutional neural models has the potential to revolutionise biomedicine. However, most deep learning models require computational resources that are not available in smartphones or edge devices; an issue that can be faced by means of compact models. The problem with such models is that they are, at least usually, less accurate than bigger models. In this work, we study how this limitation can be addressed with the application of semi-supervised learning techniques. We conduct several statistical analyses to compare performance of deep compact architectures when trained using semi-supervised learning methods for tackling image classification tasks in the biomedical context. In particular, we explore three families of compact networks, and two families of semi-supervised learning techniques for 10 biomedical tasks. By combining semi-supervised learning methods with compact networks, it is possible to obtain a similar performance to standard size networks. In general, the best results are obtained when combining data distillation with MixNet, and plain distillation with ResNet-18. Also, in general, NAS networks obtain better results than manually designed networks and quantized networks. The work presented in this paper shows the benefits of apply semi-supervised methods to compact networks; this allow us to create compact models that are not only as accurate as standard size models, but also faster and lighter. Finally, we have developed a library that simplifies the construction of compact models using semi-supervised learning methods.

Background and objectives. Domain shift is a generalisation problem of machine learning models that occurs when the data distribution of the training set is different to the data distribution encountered by the model when it is deployed. This is common in the context of biomedical image segmentation due to the variance of experimental conditions, equipment, and capturing settings. In this work, we address this challenge by studying both neural style transfer algorithms and unpaired image-to-image translation methods in the context of the segmentation of tumour spheroids. Methods. We have illustrated the domain shift problem in the context of spheroid segmentation with 4 deep learning segmentation models that achieved an IoU over 97% when tested with images following the training distribution, but whose performance decreased up to an 84\% when applied to images captured under different conditions. In order to deal with this problem, we have explored 3 style transfer algorithms (NST, deep image analogy, and STROTSS), and 6 unpaired image-to-image translations algorithms (CycleGAN, DualGAN, ForkGAN, GANILLA, CUT, and FastCUT). These algorithms have been integrated into a high-level API that facilitates their application to other contexts where the domain-shift problem occurs. Results. We have considerably improved the performance of the 4 segmentation models when applied to images captured under different conditions by using both style transfer and image-to-image translation algorithms. In particular, there are 2 style transfer algorithms (NST and deep image analogy) and 1 unpaired image-to-image translations algorithm (CycleGAN) that improve the IoU of the models in a range from 0.24 to 76.07. Therefore, reaching a similar performance to the one obtained with the models are applied to images following the training distribution.

Forms are a widespread type of template-based document used in a great variety of fields including, among others, administration, medicine, finance, or insurance. The automatic extraction of the information included in these documents is greatly demanded due to the increasing volume of forms that are generated in a daily basis. However, this is not a straightforward task when working with scanned forms because of the great diversity of templates with different location of form entities, and the quality of the scanned documents. In this context, there is a feature that is shared by all forms: they contain a collection of interlinked entities built as key-value (or label-value) pairs, together with other entities such as headers or images. In this work, we have tacked the problem of entity linking in forms by combining image processing techniques and a text classification model based on the BERT architecture. This approach achieves state-of-the-art results with a F1-score of 0.80 on the FUNSD dataset, a 5% improvement regarding the best previous method. The code of this project is available at https://github.com/mavillot/FUNSD-Entity-Linking.

Schizophrenia (SZ) is a mental disorder whereby due to the secretion of specific chemicals in the brain, the function of some brain regions is out of balance, leading to the lack of coordination between thoughts, actions, and emotions. This study provides various intelligent deep learning (DL)-based methods for automated SZ diagnosis via electroencephalography (EEG) signals. The obtained results are compared with those of conventional intelligent methods. To implement the proposed methods, the dataset of the Institute of Psychiatry and Neurology in Warsaw, Poland, has been used. First, EEG signals were divided into 25 s time frames and then were normalized by z-score or norm L2. In the classification step, two different approaches were considered for SZ diagnosis via EEG signals. In this step, the classification of EEG signals was first carried out by conventional machine learning methods, e.g., support vector machine, k-nearest neighbors, decision tree, na\"ive Bayes, random forest, extremely randomized trees, and bagging. Various proposed DL models, namely, long short-term memories (LSTMs), one-dimensional convolutional networks (1D-CNNs), and 1D-CNN-LSTMs, were used in the following. In this step, the DL models were implemented and compared with different activation functions. Among the proposed DL models, the CNN-LSTM architecture has had the best performance. In this architecture, the ReLU activation function with the z-score and L2-combined normalization was used. The proposed CNN-LSTM model has achieved an accuracy percentage of 99.25%, better than the results of most former studies in this field. It is worth mentioning that to perform all simulations, the k-fold cross-validation method with k = 5 has been used.

Multiple Sclerosis (MS) is a type of brain disease which causes visual, sensory, and motor problems for people with a detrimental effect on the functioning of the nervous system. In order to diagnose MS, multiple screening methods have been proposed so far; among them, magnetic resonance imaging (MRI) has received considerable attention among physicians. MRI modalities provide physicians with fundamental information about the structure and function of the brain, which is crucial for the rapid diagnosis of MS lesions. Diagnosing MS using MRI is time-consuming, tedious, and prone to manual errors. Hence, computer aided diagnosis systems (CADS) based on artificial intelligence (AI) methods have been proposed in recent years for accurate diagnosis of MS using MRI neuroimaging modalities. In the AI field, automated MS diagnosis is being conducted using (i) conventional machine learning and (ii) deep learning (DL) techniques. The conventional machine learning approach is based on feature extraction and selection by trial and error. In DL, these steps are performed by the DL model itself. In this paper, a complete review of automated MS diagnosis methods performed using DL techniques with MRI neuroimaging modalities are discussed. Also, each work is thoroughly reviewed and discussed. Finally, the most important challenges and future directions in the automated MS diagnosis using DL techniques coupled with MRI modalities are presented in detail.

The outbreak of the corona virus disease (COVID-19) has changed the lives of most people on Earth. Given the high prevalence of this disease, its correct diagnosis in order to quarantine patients is of the utmost importance in steps of fighting this pandemic. Among the various modalities used for diagnosis, medical imaging, especially computed tomography (CT) imaging, has been the focus of many previous studies due to its accuracy and availability. In addition, automation of diagnostic methods can be of great help to physicians. In this paper, a method based on pre-trained deep neural networks is presented, which, by taking advantage of a cyclic generative adversarial net (CycleGAN) model for data augmentation, has reached state-of-the-art performance for the task at hand, i.e., 99.60% accuracy. Also, in order to evaluate the method, a dataset containing 3163 images from 189 patients has been collected and labeled by physicians. Unlike prior datasets, normal data have been collected from people suspected of having COVID-19 disease and not from data from other diseases, and this database is made available publicly.

A correct localisation of tables in a document is instrumental for determining their structure and extracting their contents; therefore, table detection is a key step in table understanding. Nowadays, the most successful methods for table detection in document images employ deep learning algorithms; and, particularly, a technique known as fine-tuning. In this context, such a technique exports the knowledge acquired to detect objects in natural images to detect tables in document images. However, there is only a vague relation between natural and document images, and fine-tuning works better when there is a close relation between the source and target task. In this paper, we show that it is more beneficial to employ fine-tuning from a closer domain. To this aim, we train different object detection algorithms (namely, Mask R-CNN, RetinaNet, SSD and YOLO) using the TableBank dataset (a dataset of images of academic documents designed for table detection and recognition), and fine-tune them for several heterogeneous table detection datasets. Using this approach, we considerably improve the accuracy of the detection models fine-tuned from natural images (in mean a 17%, and, in the best case, up to a 60%).

Object detection is a computer vision field that has applications in several contexts ranging from biomedicine and agriculture to security. In the last years, several deep learning techniques have greatly improved object detection models. Among those techniques, we can highlight the YOLO approach, that allows the construction of accurate models that can be employed in real-time applications. However, as most deep learning techniques, YOLO has a steep learning curve and creating models using this approach might be challenging for non-expert users. In this work, we tackle this problem by constructing a suite of Jupyter notebooks that democratizes the construction of object detection models using YOLO. The suitability of our approach has been proven with a dataset of stomata images where we have achieved a mAP of 90.91%., Comment: To be published in I Workshop en Deep Learning of the CAEPIA Conference

Several approaches exist to data-mining big corpora of formal proofs. Some of these approaches are based on statistical machine learning, and some -- on theory exploration. However, most are developed for either untyped or simply-typed theorem provers. In this paper, we present a method that combines statistical data mining and theory exploration in order to analyse and automate proofs in dependently typed language of Coq., Comment: Accepted at CICM'17, Edinburgh, 17-21 July 2017