128 results on '"Henry Ng"'
Search Results
2. Local chromatin context regulates the genetic requirements of the heterochromatin spreading reaction.
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R A Greenstein, Henry Ng, Ramon R Barrales, Catherine Tan, Sigurd Braun, and Bassem Al-Sady
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Genetics ,QH426-470 - Abstract
Heterochromatin spreading, the expansion of repressive chromatin structure from sequence-specific nucleation sites, is critical for stable gene silencing. Spreading re-establishes gene-poor constitutive heterochromatin across cell cycles but can also invade gene-rich euchromatin de novo to steer cell fate decisions. How chromatin context (i.e. euchromatic, heterochromatic) or different nucleation pathways influence heterochromatin spreading remains poorly understood. Previously, we developed a single-cell sensor in fission yeast that can separately record heterochromatic gene silencing at nucleation sequences and distal sites. Here we couple our quantitative assay to a genetic screen to identify genes encoding nuclear factors linked to the regulation of heterochromatin nucleation and the distal spreading of gene silencing. We find that mechanisms underlying gene silencing distal to a nucleation site differ by chromatin context. For example, Clr6 histone deacetylase complexes containing the Fkh2 transcription factor are specifically required for heterochromatin spreading at constitutive sites. Fkh2 recruits Clr6 to nucleation-distal chromatin sites in such contexts. In addition, we find that a number of chromatin remodeling complexes antagonize nucleation-distal gene silencing. Our results separate the regulation of heterochromatic gene silencing at nucleation versus distal sites and show that it is controlled by context-dependent mechanisms. The results of our genetic analysis constitute a broad community resource that will support further analysis of the mechanisms underlying the spread of epigenetic silencing along chromatin.
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- 2022
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3. SARS-CoV-2 exposure, symptoms and seroprevalence in healthcare workers in Sweden
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Ann-Sofie Rudberg, Sebastian Havervall, Anna Månberg, August Jernbom Falk, Katherina Aguilera, Henry Ng, Lena Gabrielsson, Ann-Christin Salomonsson, Leo Hanke, Ben Murrell, Gerald McInerney, Jennie Olofsson, Eni Andersson, Cecilia Hellström, Shaghayegh Bayati, Sofia Bergström, Elisa Pin, Ronald Sjöberg, Hanna Tegel, My Hedhammar, Mia Phillipson, Peter Nilsson, Sophia Hober, and Charlotte Thålin
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Science - Abstract
Healthcare workers may be at higher risk of SARS-CoV-2 infection than the general population. Here, the authors report 19% seroprevalence of SARS-CoV-2 antibodies among 2,149 employees in a Swedish hospital. Seroprevalence was associated with patient contact and higher than the seroprevalence in the community in same time period.
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- 2020
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4. Long‐term SARS‐CoV‐2‐specific and cross‐reactive cellular immune responses correlate with humoral responses, disease severity, and symptomatology
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Ida Laurén, Sebastian Havervall, Henry Ng, Martin Lord, Aleksandra Pettke, Nina Greilert‐Norin, Lena Gabrielsson, Aikaterini Chourlia, Catarina Amoêdo‐Leite, Vijay S. Josyula, Mohamed Eltahir, Iliana Kerzeli, August J. Falk, Jonathan Hober, Wanda Christ, Anna Wiberg, My Hedhammar, Hanna Tegel, Joachim Burman, Feifei Xu, Elisa Pin, Anna Månberg, Jonas Klingström, Gustaf Christoffersson, Sophia Hober, Peter Nilsson, Mia Philipson, Pierre Dönnes, Robin Lindsay, Charlotte Thålin, and Sara Mangsbo
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B‐cell ,IFNγ ,IL‐2 ,SARS‐Cov‐2 ,T cell ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background Cellular immune memory responses post coronavirus disease 2019 (COVID‐19) have been difficult to assess due to the risks of contaminating the immune response readout with memory responses stemming from previous exposure to endemic coronaviruses. The work herein presents a large‐scale long‐term follow‐up study investigating the correlation between symptomology and cellular immune responses four to five months post seroconversion based on a unique severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2)‐specific peptide pool that contains no overlapping peptides with endemic human coronaviruses. Methods Peptide stimulated memory T cell responses were assessed with dual interferon‐gamma (IFNγ) and interleukin (IL)‐2 Fluorospot. Serological analyses were performed using a multiplex antigen bead array. Results Our work demonstrates that long‐term SARS‐CoV‐2‐specific memory T cell responses feature dual IFNγ and IL‐2 responses, whereas cross‐reactive memory T cell responses primarily generate IFNγ in response to SARS‐CoV‐2 peptide stimulation. T cell responses correlated to long‐term humoral immune responses. Disease severity as well as specific COVID‐19 symptoms correlated with the magnitude of the SARS‐CoV‐2‐specific memory T cell response four to five months post seroconversion. Conclusion Using a large cohort and a SARS‐CoV‐2‐specific peptide pool we were able to substantiate that initial disease severity and symptoms correlate with the magnitude of the SARS‐CoV‐2‐specific memory T cell responses.
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- 2022
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5. SARS-CoV-2 induces a durable and antigen specific humoral immunity after asymptomatic to mild COVID-19 infection.
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Sebastian Havervall, August Jernbom Falk, Jonas Klingström, Henry Ng, Nina Greilert-Norin, Lena Gabrielsson, Ann-Christin Salomonsson, Eva Isaksson, Ann-Sofie Rudberg, Cecilia Hellström, Eni Andersson, Jennie Olofsson, Lovisa Skoglund, Jamil Yousef, Elisa Pin, Wanda Christ, Mikaela Olausson, My Hedhammar, Hanna Tegel, Sara Mangsbo, Mia Phillipson, Anna Månberg, Sophia Hober, Peter Nilsson, and Charlotte Thålin
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Medicine ,Science - Abstract
Current SARS-CoV-2 serological assays generate discrepant results, and the longitudinal characteristics of antibodies targeting various antigens after asymptomatic to mild COVID-19 are yet to be established. This longitudinal cohort study including 1965 healthcare workers, of which 381 participants exhibited antibodies against the SARS-CoV-2 spike antigen at study inclusion, reveal that these antibodies remain detectable in most participants, 96%, at least four months post infection, despite having had no or mild symptoms. Virus neutralization capacity was confirmed by microneutralization assay in 91% of study participants at least four months post infection. Contrary to antibodies targeting the spike protein, antibodies against the nucleocapsid protein were only detected in 80% of previously anti-nucleocapsid IgG positive healthcare workers. Both anti-spike and anti-nucleocapsid IgG levels were significantly higher in previously hospitalized COVID-19 patients four months post infection than in healthcare workers four months post infection (p = 2*10-23 and 2*10-13 respectively). Although the magnitude of humoral response was associated with disease severity, our findings support a durable and functional humoral response after SARS-CoV-2 infection even after no or mild symptoms. We further demonstrate differences in antibody kinetics depending on the antigen, arguing against the use of the nucleocapsid protein as target antigen in population-based SARS-CoV-2 serological surveys.
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- 2022
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6. Impact of SARS‐CoV‐2 infection on vaccine‐induced immune responses over time
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Sebastian Havervall, Ulrika Marking, Nina Greilert‐Norin, Max Gordon, Henry Ng, Wanda Christ, Mia Phillipson, Peter Nilsson, Sophia Hober, Kim Blom, Jonas Klingström, Sara Mangsbo, Mikael Åberg, and Charlotte Thålin
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COVID‐19 ,hybrid immunity ,immune responses ,SARS‐CoV‐2 ,vaccination ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Objective To determine the long‐term impact of prior SARS‐CoV‐2 infection on immune responses after COVID‐19 vaccination. Methods Using longitudinally collected blood samples from the COMMUNITY study, we determined binding (WHO BAU mL−1) and neutralising antibody titres against ten SARS‐CoV‐2 variants over 7 months following BNT162b2 in SARS‐CoV‐2‐recovered (n = 118) and SARS‐CoV‐2‐naïve (n = 289) healthcare workers with confirmed prior SARS‐CoV‐2 infection. A smaller group with (n = 47) and without (n = 60) confirmed prior SARS‐CoV‐2 infection receiving ChAdOx1 nCoV‐19 was followed for 3 months. SARS‐CoV‐2‐specific memory T‐cell responses were investigated in a subset of SARS‐CoV‐2‐naïve and SARS‐CoV‐2‐recovered vaccinees. Results Vaccination with both vaccine platforms resulted in substantially enhanced T‐cell responses, anti‐spike IgG responses and neutralising antibodies effective against ten SARS‐CoV‐2 variants in SARS‐CoV‐2‐recovered participants as compared to SARS‐CoV‐2‐naïve participants. The enhanced immune responses sustained over 7 months following vaccination. Conclusion These findings imply that prior SARS‐CoV‐2 infection should be taken into consideration when planning booster doses and design of current and future COVID‐19 vaccine programmes.
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- 2022
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7. The histone chaperone FACT facilitates heterochromatin spreading by regulating histone turnover and H3K9 methylation states
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Magdalena Murawska, R.A. Greenstein, Tamas Schauer, Karl C.F. Olsen, Henry Ng, Andreas G. Ladurner, Bassem Al-Sady, and Sigurd Braun
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FACT ,histone chaperone ,heterochromatin spreading ,Epe1 ,histone turnover ,Biology (General) ,QH301-705.5 - Abstract
Summary: Heterochromatin formation requires three distinct steps: nucleation, self-propagation (spreading) along the chromosome, and faithful maintenance after each replication cycle. Impeding any of those steps induces heterochromatin defects and improper gene expression. The essential histone chaperone FACT (facilitates chromatin transcription) has been implicated in heterochromatin silencing, but the mechanisms by which FACT engages in this process remain opaque. Here, we pinpoint its function to the heterochromatin spreading process in fission yeast. FACT impairment reduces nucleation-distal H3K9me3 and HP1/Swi6 accumulation at subtelomeres and derepresses genes in the vicinity of heterochromatin boundaries. FACT promotes spreading by repressing heterochromatic histone turnover, which is crucial for the H3K9me2 to me3 transition that enables spreading. FACT mutant spreading defects are suppressed by removal of the H3K9 methylation antagonist Epe1. Together, our study identifies FACT as a histone chaperone that promotes heterochromatin spreading and lends support to the model that regulated histone turnover controls the propagation of repressive methylation marks.
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- 2021
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8. Antibody responses after a single dose of ChAdOx1 nCoV-19 vaccine in healthcare workers previously infected with SARS-CoV-2
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Sebastian Havervall, Ulrika Marking, Nina Greilert-Norin, Henry Ng, Max Gordon, Ann-Christin Salomonsson, Cecilia Hellström, Elisa Pin, Kim Blom, Sara Mangsbo, Mia Phillipson, Jonas Klingström, Sophia Hober, Peter Nilsson, Mikael Åberg, and Charlotte Thålin
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SARS-CoV-2 ,Neutralizing antibody response ,Prior infection ,ChAdOx1 nCoV-19 ,BNT162b2 vaccine ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Recent reports demonstrate robust serological responses to a single dose of messenger RNA (mRNA) vaccines in individuals previously infected with SARS-CoV-2. Data on immune responses following a single-dose adenovirus-vectored vaccine expressing the SARS-CoV-2 spike protein (ChAdOx1 nCoV-19) in individuals with previous SARS-CoV-2 infection are however limited, and current guidelines recommend a two-dose regimen regardless of preexisting immunity. Methods: We compared RBD-specific IgG and RBD-ACE2 blocking antibodies against SARS-CoV-2 wild type and variants of concern following two doses of the mRNA vaccine BNT162b2 in SARS-CoV-2 naïve healthcare workers (n=65) and a single dose of the adenovector vaccine ChAdOx1 nCoV-19 in 82 healthcare workers more than (n=45) and less than (n=37) 11 months post mild SARS-CoV-2 infection at time of vaccination. Findings: The post-vaccine levels of RBD-specific IgG and neutralizing antibodies against the SARS-CoV-2 wild type and variants of concern including Delta lineage 1.617.2 were similar or higher in participants receiving a single dose of ChAdOx1 nCoV-19 vaccine post SARS-CoV-2 infection (both more than and less than 11 months post infection) compared to SARS-CoV-2 naïve participants who received two doses of BNT162b2 vaccine. Interpretation: Our data support that a single dose ChAdOx1 nCoV-19 vaccine that is administered up to at least 11 months post SARS-CoV-2 infection serves as an effective immune booster. This provides a possible rationale for a single-dose vaccine regimen. Funding: A full list of funding bodies that contributed to this study can be found in the Acknowledgements section
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- 2021
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9. Duration of SARS-CoV-2 Immune Responses Up to Six Months Following Homologous or Heterologous Primary Immunization with ChAdOx1 nCoV-19 and BNT162b2 mRNA Vaccines
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Ulrika Marking, Sebastian Havervall, Nina Greilert-Norin, Henry Ng, Kim Blom, Peter Nilsson, Mia Phillipson, Sophia Hober, Charlotta Nilsson, Sara Mangsbo, Wanda Christ, Jonas Klingström, Max Gordon, Mikael Åberg, and Charlotte Thålin
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COVID-19 ,SARS-CoV-2 ,SARS-CoV-2 vaccination ,heterologous ,immune response ,duration ,Medicine - Abstract
Heterologous primary immunization against SARS-CoV-2 is part of applied recommendations. However, little is known about duration of immune responses after heterologous vaccine regimens. To evaluate duration of immune responses after primary vaccination with homologous adeno-vectored ChAdOx1 nCoV-19 vaccine (ChAd) or heterologous ChAd/BNT162b2 mRNA vaccine (BNT), anti-spike-IgG and SARS-CoV-2 VOC-neutralizing antibody responses were measured in 354 healthcare workers (HCW) at 2 weeks, 3 months, 5 months and 6 months after the second vaccine dose. T-cell responses were investigated using a whole blood interferon gamma (IFN-γ) release assay 2 weeks and 3 months post second vaccine dose. Two hundred and ten HCW immunized with homologous BNT were enrolled for comparison of antibody responses. In study participants naïve to SARS-CoV-2 prior to vaccination, heterologous ChAd/BNT resulted in 6-fold higher peak anti-spike IgG antibody titers compared to homologous ChAd vaccination. The half-life of antibody titers was 3.1 months (95% CI 2.8–3.6) following homologous ChAd vaccination and 1.9 months (95% CI 1.7–2.1) after heterologous vaccination, reducing the GMT difference between the groups to 3-fold 6 months post vaccination. Peak T-cell responses were stronger in ChAd/BNT vaccinees, but no significant difference was observed 3 months post vaccination. SARS-CoV-2 infection prior to vaccination resulted in substantially higher peak GMTs and IFN-γ levels and enhanced SARS-CoV-2 specific antibody and T cell responses over time. Heterologous primary SARS-CoV-2 immunization with ChAd and BNT elicits a stronger initial immune response compared to homologous vaccination with ChAd. However, although the differences in humoral responses remain over 6 months, the difference in SARS-CoV-2 specific T cell responses are no longer significant three months after vaccination.
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- 2022
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10. Elav-Mediated Exon Skipping and Alternative Polyadenylation of the Dscam1 Gene Are Required for Axon Outgrowth
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Zhiping Zhang, Kevin So, Ryan Peterson, Matthew Bauer, Henry Ng, Yong Zhang, Jung Hwan Kim, Thomas Kidd, and Pedro Miura
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Biology (General) ,QH301-705.5 - Abstract
Summary: Many metazoan genes express alternative long 3′ UTR isoforms in the nervous system, but their functions remain largely unclear. In Drosophila melanogaster, the Dscam1 gene generates short and long (Dscam1-L) 3′ UTR isoforms because of alternative polyadenylation (APA). Here, we found that the RNA-binding protein Embryonic Lethal Abnormal Visual System (Elav) impacts Dscam1 biogenesis at two levels, including regulation of long 3′ UTR biogenesis and skipping of an upstream exon (exon 19). MinION long-read sequencing confirmed the connectivity of this alternative splicing event to the long 3′ UTR. Knockdown or CRISPR deletion of Dscam1-L impaired axon outgrowth in Drosophila. The Dscam1 long 3′ UTR was found to be required for correct Elav-mediated skipping of exon 19. Elav thus co-regulates APA and alternative splicing to generate specific Dscam1 transcripts that are essential for neural development. This coupling of APA to alternative splicing might represent a new class of regulated RNA processing. : Like most metazoan genes, Dscam1 expresses alternative short and long 3′ UTR mRNAs. Zhang et al. find that loss of Dscam1 long 3′ UTR transcripts impairs axon outgrowth in Drosophila. Long-read sequencing reveals that these long 3′ UTR mRNAs preferentially skip an upstream exon, altering Dscam1 amino acid sequence. Keywords: 3′ UTR, alternative cleavage and polyadenylation, alternative splicing, axon guidance, CRISPR, Dscam1, Elav, exon skipping, MinION
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- 2019
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11. Polymorphism of pfcrt K76T and pfatpase6 S769N Genes in Malaria Patients at Papua, Indonesia
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Eka W. Suradji, Henry Ng, Ratih Finisanti, Eni Indrawati, Andreas Ciokan, Melisa I. Barliana, and Rizky Abdulah
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Therapeutics. Pharmacology ,RM1-950 ,Pharmacy and materia medica ,RS1-441 - Abstract
Indonesia is one of the country with the highest prevalence of malaria infections. In order to achieve malaria control as an act to support Millenium Development Goals, complete eradication of Plasmodium parasites needs to be conducted. Drugs resistance has been a hindrance in this act. This study aimed to assess Plasmodium parasite resistance towards chloroquine (CQ) and artemisinin combined therapy (ACT) through the determination of polymorphism on pfcrt K76T and pfatpase6 S769N genes, respectively. Subjects of this study were 16 adult patients positively diagnosed with malaria infection caused by P. falciparum or cross infection. DNA obtained from patient blood samples were amplified using polymerase chain reaction (PCR) and then the fragment of pfcrt and pfatpase6 were then digested using ApoI and DdeI, respectively. The results showed that 81% of the pfcrt K76T polymorphism was occured on the samples, which indicated the resistance of CQ. Meanwhile, 87% of the patient samples did not showed any polymorphism of pfatpase6 S769N gene, which indicated no resistance of ACT. This study showed that CQ was no longer effective as the first line therapy of antimalarial drugs due to the resistance of P. falciparum to CQ. However, the used of ACT still can be maintained in the antimalarial drug therapy regimen. In conclusion, the polymorphism of both genes negatively influenced the effectivity of antimalarial therapy using artemisinin. Keywords: antimalarial drugs, resistance, polymorphism, endemic area
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- 2016
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12. Method for CRISPR/Cas9 Mutagenesis in Candida albicans
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Neta Dean and Henry Ng
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Biology (General) ,QH301-705.5 - Abstract
Candida albicans is the most prevalent and important human fungal pathogen. The advent of CRISPR as a means of gene editing has greatly facilitated genetic analysis in C. albicans. Here, we describe a detailed step-by-step procedure to construct and analyze C. albicans deletion mutants. This protocol uses plasmids that allow simple ligation of synthetic duplex 23mer guide oligodeoxynucleotides for high copy gRNA expression in C. albicans strains that express codon-optimized Cas9. This protocol allows isolation and characterization of deletion strains within nine days.
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- 2018
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13. Dramatic Improvement of CRISPR/Cas9 Editing in Candida albicans by Increased Single Guide RNA Expression
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Henry Ng and Neta Dean
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CRISPR ,Candida albicans ,RFP ,double-strand-break repair ,Microbiology ,QR1-502 - Abstract
ABSTRACT The clustered regularly interspaced short palindromic repeat system with CRISPR-associated protein 9 nuclease (CRISPR/Cas9) has emerged as a versatile tool for genome editing in Candida albicans. Mounting evidence from other model systems suggests that the intracellular levels of single guide RNA (sgRNA) limit the efficiency of Cas9-dependent DNA cleavage. Here, we tested this idea and describe a new means of sgRNA delivery that improves previously described methods by ~10-fold. The efficiency of Cas9/sgRNA-dependent cleavage and repair of a single-copy yeast enhanced monomeric red fluorescent protein (RFP) gene was measured as a function of various parameters that are hypothesized to affect sgRNA accumulation, including transcriptional and posttranscriptional processing. We analyzed different promoters (SNR52, ADH1, and tRNA), as well as different posttranscriptional RNA processing schemes that serve to generate or stabilize mature sgRNA with precise 5′ and 3′ ends. We compared the effects of flanking sgRNA with self-cleaving ribozymes or by tRNA, which is processed by endogenous RNases. These studies demonstrated that sgRNA flanked by a 5′ tRNA and transcribed by a strong RNA polymerase II ADH1 promoter increased Cas9-dependent RFP mutations by 10-fold. Examination of double-strand-break (DSB) repair in strains hemizygous for RFP demonstrated that both homology-directed and nonhomologous end-joining pathways were used to repair breaks. Together, these results support the model that gRNA expression can be rate limiting for efficient CRISPR/Cas mutagenesis in C. albicans. IMPORTANCE Candida albicans is an important human fungal pathogen. An understanding of fungal virulence factors has been slow because C. albicans is genetically intractable. The recent development of CRISPR/Cas in C. albicans (V. K. Vyas, M. I. Barrasa, G. R. Fink, Sci Adv 1:e1500248, 2015, https://doi.org/10.1126/sciadv.1500248 ) has the potential to circumvent this problem. However, as has been found in other organisms, CRISPR/Cas mutagenesis efficiency can be frustratingly variable. Here, we systematically examined parameters hypothesized to alter sgRNA intracellular levels in order to optimize CRISPR/Cas in C. albicans. Our most important conclusion is that increased sgRNA expression and maturation dramatically improve efficiency of CRISPR/Cas mutagenesis in C. albicans by ~10-fold. Thus, we anticipate that the modifications described here will further advance the application of CRISPR/Cas for genome editing in C. albicans.
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- 2017
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14. Cross-Model Image Annotation Platform with Active Learning
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Lynnette, Ng Hui Xian, Hock, Henry Ng Siong, and Yen, Nguwi Yok
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Computer Science - Computer Vision and Pattern Recognition - Abstract
We have seen significant leapfrog advancement in machine learning in recent decades. The central idea of machine learnability lies on constructing learning algorithms that learn from good data. The availability of more data being made publicly available also accelerates the growth of AI in recent years. In the domain of computer vision, the quality of image data arises from the accuracy of image annotation. Labeling large volume of image data is a daunting and tedious task. This work presents an End-to-End pipeline tool for object annotation and recognition aims at enabling quick image labeling. We have developed a modular image annotation platform which seamlessly incorporates assisted image annotation (annotation assistance), active learning and model training and evaluation. Our approach provides a number of advantages over current image annotation tools. Firstly, the annotation assistance utilizes reference hierarchy and reference images to locate the objects in the images, thus reducing the need for annotating the whole object. Secondly, images can be annotated using polygon points allowing for objects of any shape to be annotated. Thirdly, it is also interoperable across several image models, and the tool provides an interface for object model training and evaluation across a series of pre-trained models. We have tested the model and embeds several benchmarking deep learning models. The highest accuracy achieved is 74%., Comment: 8 pages.2 figures. 1 table
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- 2020
15. Cross-Model Image Annotation Platform with Active Learning.
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Lynnette Hui Xian Ng, Henry Ng Siong Hock, and Nguwi Yok Yen
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- 2020
16. Sustainable development goals, disaster risk management, and indigenous knowledge: a critical assessment of the interlinkages
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Henry Ngenyam Bang
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Triple nexus ,Double nexus ,Interlinkages ,Indigenous and local knowledge ,Sustainable development goals ,Disaster risk management ,Economic growth, development, planning ,HD72-88 - Abstract
Abstract With their livelihoods intricately linked to nature, local/rural communities have always been vulnerable to environmental risks. They have used Indigenous and Local Knowledge (hereafter referred to as IK) garnered over generations to cope with, adapt and respond to natural/environmental hazards. Although Indigenous/Local communities have internalised IK of disaster risk management (DRM), the nexus has not been well established, albeit having the potential to contribute to the Sustainable Development Goals (SDGs). This paper argues that IK is an esteemed model of endurance, resilience and resistance in the history of DRM that is invaluable in achieving the SDGs. Joined action between IK and DRM would have more significant and mutually reinforcing development impacts. Underpinned by the double/triple nexus conceptual framework, this paper utilises a qualitative, exploratory, and analytical methodological approach to argue for integrating IK, DRM and the SDGs. Insights from the findings reveal that stakeholder application of the interlinkages would expedite achieving more significant sustainable development outcomes in a complementary, supportive way. The connections will enhance knowledge and understanding of approaches that combine multiple development themes and sectors and advance the literature on nexus approaches, particularly in DRM and sustainable development. Developing and resource-constrained countries with minimal application of scientific knowledge in their DRM frameworks will benefit most from the interlinkages.
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- 2024
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17. Charge screening wormlike micelles affects extensional relaxation time and noodle formation
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Rui Huang, Daniel McDowall, Henry Ng, Lisa Thomson, Youssra K. Al-Hilaly, James Doutch, Sam Burholt, Louise C. Serpell, Robert J. Poole, and Dave J. Adams
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Surface-Active Agents ,Viscosity ,Materials Chemistry ,Metals and Alloys ,Ceramics and Composites ,General Chemistry ,Micelles ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
A functionalised dipeptide that self-assembles to form wormlike micelles at high pH can be treated as a surfactant. By varying salt concentration, the self-assembled structures and interactions between them change, resulting in solutions with very different shear and extensional viscosity. From these, gel noodles with different mechanical properties can be prepared.
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- 2022
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18. The Use of Pitot Tube on IRT Boundary Layer Analysis Validation
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Ryan Tsao, Nicholas Nomikos, Jack Furey, Henry Ng, and Pier Marzocca
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- 2023
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19. Transferring Micellar Changes to Bulk Properties via Tunable Self-Assembly and Hierarchical Ordering
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Lisa Thomson, Daniel McDowall, Libby Marshall, Olivia Marshall, Henry Ng, W. Joseph A. Homer, Dipankar Ghosh, Wanli Liu, Adam M. Squires, Eirini Theodosiou, Paul D. Topham, Louise C. Serpell, Robert J. Poole, Annela Seddon, and Dave J. Adams
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General Engineering ,General Physics and Astronomy ,General Materials Science - Abstract
Hierarchical self-assembly is an effective means of preparing useful materials. However, control over assembly across length scales is a difficult challenge, often confounded by the perceived need to redesign the molecular building blocks when new material properties are needed. Here, we show that we can treat a simple dipeptide building block as a polyelectrolyte and use polymer physics approaches to explain the self-assembly over a wide concentration range. This allows us to determine how entangled the system is and therefore how it might be best processed, enabling us to prepare interesting analogues to threads and webs, as well as films that lose order on heating and "noodles" which change dimensions on heating, showing that we can transfer micellar-level changes to bulk properties all from a single building block.
- Published
- 2022
20. Rollover as a Gait in Legged Autonomous Robots: A Systems Analysis.
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Vadim Kyrylov, Mihai Catalina, and Henry Ng
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- 2009
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21. Unsteady Incidence and the Correction of Pneumatic Probe Measurements
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John Coull, Henry Ng, Tony Dickens, and José Serna
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Pneumatic probes such as five-hole probes (5HP) have many advantages and can measure flow angles, total and static pressure, velocity and Mach number. In most applications, pressure transducers are connected to the probe head by lengths of tubes, allowing a simple, miniaturised, low-cost probe construction. Such “steady” probes therefore measure a “pneumatically-averaged” flow field, which is of sufficient accuracy for many purposes. However, this paper demonstrates that when the probe incidence angle fluctuates, pneumatic averaging causes errors in the indicated total and static pressure. The aim of this paper is to understand these pneumatic averaging errors and to demonstrate practical means to post-correct data. A quasi-steady model provides an analytical framework to explain the effect of unsteady flow on 5HPs. Total and static pressure coefficients have a largely symmetric response to positive and negative incidence, causing a bias error in the pneumatic average. The steady calibration cannot account for these effects, leading to erroneous measurements. These errors are demonstrated by comparing 5HP and Kiel-shrouded pitot traverses in the shedding wake of a D-shaped body. The 5HP overestimates total pressure loss and drag coefficients by up to 44% and 60% respectively. Similar pneumatic-averaging errors will have affected a substantial body of data in the literature. A post-correction method is demonstrated that can be applied to historical data. Estimates of unsteady flow angles are obtained from a low-cost unsteady computation. The quasi-steady model accurately corrects the 5HP data, reducing errors by an order of magnitude. Similar corrections are obtained using simple correlations based on the root-mean-squared angle fluctuation.
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- 2022
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22. Delivering Holistic Transgender and Nonbinary Care in the Age of Telemedicine and COVID-19
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Bailey Ferguson, James M. Hekman, Richard Harlan, Elizabeth Dimmock, Henry Ng, Hiba Obeid, and Lyndsay Zimmerman
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Telemedicine ,Medical education ,030505 public health ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Best practice ,Telehealth ,Primary care ,humanities ,03 medical and health sciences ,0302 clinical medicine ,Multidisciplinary approach ,Transgender ,Medicine ,Pharmacology (medical) ,030212 general & internal medicine ,Social determinants of health ,0305 other medical science ,business - Abstract
This review describes the authors' experiences in offering gender-affirming primary care and hormonal care using an evidence-based, interprofessional, and multidisciplinary approach. The authors offer references for best practices set forth by organizations and thought leaders in transgender health and describe the key processes they developed to respectfully deliver affirming care to transgender and nonbinary patients.
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- 2021
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23. Sustainability and Development of Microalgae 4.0
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Henry Ng, Chung Hong Tan, Saifuddin Nomanbhay, and Pau Loke Show
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- 2022
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24. Transferring molecular level changes to bulk properties via tunable self-assembly and hierarchical ordering
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Lisa Thomson, Daniel McDowall, Libby Marshall, Olivia Marshall, Henry Ng, Joe Homer, Eirini Theodosiou, Paul Topham, Louise Serpell, Robert Poole, Annela Seddon, and Dave Adams
- Abstract
Hierarchical self-assembly is an effective means of preparing useful materials. However, control over assembly across length scales is a difficult challenge, often confounded by the perceived need to re-design the molecular building blocks when new material properties are needed. Here, we show that we can treat a simple dipeptide building block as a polyelectrolyte and use polymer physics approaches to explain the self-assembly over a wide concentration range. This allows us to prepare interesting analogues to threads and webs, as well as films that lose order on heating and “noodles” which change dimensions on heating, showing that we can transfer molecular-level changes to bulk properties all from a single building block.
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- 2022
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25. Displacement-induced destitution in Cameroon: seeking durable livelihood solutions for internally displaced persons from the Anglophone crisis
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Henry Ngenyam Bang
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Internally displaced persons ,sustainable livelihoods ,Cameroon Anglophone crisis ,disaster management with sustainable livelihoods framework ,non-governmental organisations ,Africa ,Social Sciences - Abstract
The proliferation of internal displacement is a socio-economic crisis in Africa that requires scrutiny of the livelihoods of the internally displaced. Despite acknowledging the vulnerabilities, poverty, and insecurity of internally displaced people reliant on humanitarian assistance, governments and other stakeholders have not taken concrete initiatives to remedy the situation. This study focuses on civil conflict-induced internal displacement and received funding from the UK’s Global Challenges Research Fund to address an urgent socio-economic need in developing countries. The research interrogated viable livelihood options for internally displaced persons from Cameroon’s ongoing Anglophone crisis. Anchored by a sustainable livelihood conceptual lens, the methodology utilised a predominantly qualitative research design to generate empirical data from local humanitarian agencies servicing internally displaced persons through semi-structured interviews and focus group discussions. Key findings reveal limited humanitarian assistance and numerous livelihood challenges facing the internally displaced, poor management of humanitarian funds by public agencies, ways to assist IDPs in achieving sustainable livelihoods, weak collaboration/coordination between the government and local humanitarian agencies to help displaced persons in sustaining their livelihoods, the assistance local humanitarian organisation needs to help displaced persons gain self-reliant livelihoods, broad support for viable livelihoods and suggestions on achieving them. This study provides evidence-based knowledge on durable livelihoods for internally displaced people and enhances academic literature and policy development on internal displacement. Insights from the findings inform recommendations that would mitigate the risk of permanently trapping displaced persons in a vicious cycle of destitution and food aid dependency and instead foster self-reliance during internal displacement.
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- 2024
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26. Circulating Markers of Neutrophil Extracellular Traps Are of Prognostic Value in Patients With COVID-19
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Fien A. von Meijenfeldt, Charlotte Thålin, Henry Ng, Axel Rosell, Katherina Aguilera, Kristel Parv, Nigel Mackman, Mia Phillipson, Ton Lisman, Sebastian Havervall, and Groningen Institute for Organ Transplantation (GIOT)
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Male ,0301 basic medicine ,Extracellular Traps ,medicine.medical_treatment ,immunothrombosis ,Inflammation ,histone ,030204 cardiovascular system & hematology ,Asymptomatic ,03 medical and health sciences ,0302 clinical medicine ,Fibrinolysis ,Humans ,Medicine ,Prospective Studies ,thrombosis ,Aged ,biology ,business.industry ,C-reactive protein ,COVID-19 ,Neutrophil extracellular traps ,Middle Aged ,Prognosis ,medicine.disease ,Thrombosis ,cytokines ,Sars-Cov2 ,Cytokine release syndrome ,030104 developmental biology ,Immunology ,Disease Progression ,biology.protein ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Female ,fibrinolysis ,Endothelium, Vascular ,medicine.symptom ,Cytokine Release Syndrome ,Cardiology and Cardiovascular Medicine ,business ,Biomarkers ,extracellular traps ,Clinical and Population Studies - Abstract
Supplemental Digital Content is available in the text., Objective: The full spectrum of coronavirus disease 2019 (COVID-19) infection ranges from asymptomatic to acute respiratory distress syndrome, characterized by hyperinflammation and thrombotic microangiopathy. The pathogenic mechanisms are poorly understood, but emerging evidence suggest that excessive neutrophil extracellular trap (NET) formation plays a key role in COVID-19 disease progression. Here, we evaluate if circulating markers of NETs are associated with COVID-19 disease severity and clinical outcome, as well as to markers of inflammation and in vivo coagulation and fibrinolysis. Approach and Results: One hundred six patients with COVID-19 with moderate to severe disease were enrolled shortly after hospital admission and followed for 4 months. Acute and convalescent plasma samples as well as plasma samples from 30 healthy individuals were assessed for markers of NET formation: citrullinated histone H3, cell-free DNA, NE (neutrophil elastase). We found that all plasma levels of NET markers were elevated in patients with COVID-19 relative to healthy controls, that they were associated with respiratory support requirement and short-term mortality, and declined to those found in healthy individuals 4 months post-infection. The levels of the NET markers also correlated with white blood cells, neutrophils, inflammatory cytokines, and C-reactive protein, as well as to markers of in vivo coagulation, fibrinolysis, and endothelial damage. Conclusions: Our findings suggest a role of NETs in COVID-19 disease progression, implicating their contribution to an immunothrombotic state. Further, we observed an association between circulating markers of NET formation and clinical outcome, demonstrating a potential role of NET markers in clinical decision-making, as well as for NETs as targets for novel therapeutic interventions in COVID-19.
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- 2020
27. Optimal cutting temperature medium embedding and cryostat sectioning are valid for cardiac myofilament function assessment
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Mediha Becirovic Agic, Henrik Isackson, Henry Ng, and Michael Hultström
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Cryopreservation ,Male ,Cryostat ,Myofilament ,Paraffin Embedding ,Materials science ,Myocardial tissue ,Physiology ,Myocardium ,Mice, Inbred C57BL ,Function analysis ,Mice ,Myofibrils ,Physiology (medical) ,Animals ,Frozen Sections ,Embedding ,Cardiology and Cardiovascular Medicine ,Fixation (histology) ,Biomedical engineering - Abstract
Myocardial tissue in optimal cutting temperature (OCT) fixation and cryostat sectioning was tested as a means of storing and preparing tissue for myofilament function analysis in relation to conventional liquid nitrogen freezing and dissection. Actomyosin interaction, Ca2+ force activation, and passive compliance were tested. The study concluded that OCT storage and cryostat sectioning do not interfere with the actomyosin cross-bridge dynamics or Ca2+ activation but that absolute tension values suffer and may not be investigated by this method.
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- 2020
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28. Correlates of protection, viral load trajectories and symptoms in BA.1, BA.1.1 and BA.2 breakthrough infections in triple vaccinated healthcare workers
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Ulrika Marking, Sebastian Havervall, Nina Greilert Norin, Oscar Bladh, Wanda Christ, Max Gordon, Henry Ng, Kim Blom, Mia Phillipson, Sara Mangsbo, Anna Smed Sörensen, Peter Nilsson, Sophia Hober, Mikael Åberg, Jonas Klingström, and Charlotte Thålin
- Abstract
BackgroundBooster vaccine doses offer protection against severe COVID-19 caused by omicron but are less effective against infection. Characteristics such as serological correlates of protection, viral abundance, and clearance of omicron infection in triple vaccinated individuals are scarce.MethodsWe conducted a 4-week twice-weekly SARS-CoV-2 qPCR screening shortly after an mRNA vaccine booster in 368 healthcare workers. Spike-specific IgG levels and neutralization titers were determined at study start. qPCR-positive participants were sampled repeatedly for two weeks and monitored for symptoms.ResultIn total 81 (cumulative incidence 22%) omicron infections were detected, divided between BA.1, BA.1.1 and BA.2. Increasing post-booster antibody titers were protective against infection (pConclusionWe report a high incidence of omicron infection despite recent booster vaccination in triple vaccinated individuals. Increasing levels of vaccine-induced spike-specific WT antibodies entail increased protection against infection and reduce viral load if infected. High viral load and secretion of live virus for up to nine days may facilitate transmission in a triple vaccinated population.
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- 2022
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29. The Mnn10/Anp1-dependent N-linked outer chain glycan is dispensable for Candida albicans cell wall integrity
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Neta Dean, Rachel Jones, Justin DaSilva, Gregory Chionchio, and Henry Ng
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Investigation ,Membrane Glycoproteins ,Saccharomyces cerevisiae Proteins ,Cell Wall ,Polysaccharides ,Candida albicans ,Genetics ,Membrane Proteins ,Saccharomyces cerevisiae ,Mannose ,Mannosyltransferases - Abstract
Candida albicans cell wall glycoproteins, and in particular their mannose-rich glycans, are important for maintaining cellular integrity as well as host recognition, adhesion, and immunomodulation. The asparagine (N)-linked mannose outer chain of these glycoproteins is produced by Golgi mannosyltransferases (MTases). The outer chain is composed of a linear backbone of ∼50 α1,6-linked mannoses, which acts as a scaffold for addition of ∼150 or more mannoses in other linkages. Here, we describe the characterization of C. albicans OCH1, MNN9, VAN1, ANP1, MNN10, and MNN11, which encode the conserved Golgi MTases that sequentially catalyze the α1,6 mannose outer chain backbone. Candida albicans och1Δ/Δ, mnn9Δ/Δ, and van1Δ/Δ mutants block the earliest steps of backbone synthesis and like their Saccharomyces cerevisiae counterparts, have severe cell wall and growth phenotypes. Unexpectedly, and in stark contrast to S. cerevisiae, loss of Anp1, Mnn10, or Mnn11, which together synthesize most of the backbone, have no obvious deleterious phenotypes. These mutants were unaffected in cell morphology, growth, drug sensitivities, hyphal formation, and macrophage recognition. Analyses of secreted glycosylation reporters demonstrated that anp1Δ/Δ, mnn10Δ/Δ, and mnn11Δ/Δ strains accumulate glycoproteins with severely truncated N-glycan chains. This hypo-mannosylation did not elicit increased chitin deposition in the cell wall, which in other yeast and fungi is a key compensatory response to cell wall integrity breaches. Thus, C. albicans has evolved an alternate mechanism to adapt to cell wall weakness when N-linked mannan levels are reduced.
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- 2022
30. Robust humoral and cellular immune responses and low risk for reinfection at least 8 months following asymptomatic to mild COVID-19
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Ann-Christin Salomonsson, Sophia Hober, Jennie Olofsson, Jamil Yousef, Martha Kihlgren, Nina Greilert-Norin, Sara M. Mangsbo, Henry Ng, Mia Phillipson, Martin Lord, Axel Rosell, My Hedhammar, Sebastian Havervall, Katherina Aguilera, Charlotte Thålin, Maja Månsson, Jonas Klingström, Lena Gabrielsson, Hanna Tegel, Ulrika Marking, Anna Månberg, August Jernbom Falk, Ida Laurén, Eni Andersson, Elisa Pin, Pierre Dönnes, Lovisa Skoglund, Cecilia Hellström, Peter Nilsson, and Mikael Åberg
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Adult ,Male ,medicine.medical_specialty ,Infectious Medicine ,Time Factors ,Coronavirus disease 2019 (COVID-19) ,Infektionsmedicin ,Antibodies, Viral ,Asymptomatic ,SARS‐CoV‐2 ,COVID-19 Serological Testing ,reinfection ,Memory T Cells ,Immune system ,COVID‐19 ,Internal medicine ,Internal Medicine ,Medicine ,Humans ,Cumulative incidence ,Asymptomatic Infections ,Pandemics ,Immunity, Cellular ,biology ,business.industry ,SARS-CoV-2 ,Immunology in the medical area ,COVID-19 ,Original Articles ,Middle Aged ,long‐term immunity ,Immunity, Humoral ,Vaccination ,medicine.anatomical_structure ,Immunologi inom det medicinska området ,COVID-19 Nucleic Acid Testing ,Immunoglobulin G ,Cohort ,biology.protein ,Original Article ,Female ,medicine.symptom ,Antibody ,business ,Memory T cell ,humoral response ,long-term immunity - Abstract
Background: Emerging data support detectable immune responses for months after severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and vaccination, but it is not yet established to what degree and for how long protection against reinfection lasts. Methods: We investigated SARS-CoV-2-specific humoral and cellular immune responses more than 8 months post-asymptomatic, mild and severe infection in a cohort of 1884 healthcare workers (HCW) and 51 hospitalized COVID-19 patients. Possible protection against SARS-CoV-2 reinfection was analyzed by a weekly 3-month polymerase chain reaction (PCR) screening of 252 HCW that had seroconverted 7 months prior to start of screening and 48 HCW that had remained seronegative at multiple time points. Results: All COVID-19 patients and 96% (355/370) of HCW who were anti-spike IgG positive at inclusion remained anti-spike IgG positive at the 8-month follow-up. Circulating SARS-CoV-2-specific memory T cell responses were detected in 88% (45/51) of COVID-19 patients and in 63% (233/370) of seropositive HCW. The cumulative incidence of PCR-confirmed SARS-CoV-2 infection was 1% (3/252) among anti-spike IgG positive HCW (0.13 cases per 100 weeks at risk) compared to 23% (11/48) among anti-spike IgG negative HCW (2.78 cases per 100 weeks at risk), resulting in a protective effect of 95.2% (95% CI 81.9%-99.1%). Conclusions: The vast majority of anti-spike IgG positive individuals remain anti-spike IgG positive for at least 8 months regardless of initial COVID-19 disease severity. The presence of anti-spike IgG antibodies is associated with a substantially reduced risk of reinfection up to 9 months following asymptomatic to mild COVID-19. De tre första författarna delar förstaförfattarskapetDe fem sista författarna delar sistaförfattarskapet
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- 2022
31. Local chromatin context regulates the genetic requirements of the heterochromatin spreading reaction
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R. A. Greenstein, Henry Ng, Ramon R. Barrales, Catherine Tan, Sigurd Braun, Bassem Al-Sady, and van Steensel, Bas
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Cancer Research ,1.1 Normal biological development and functioning ,Chromatin ,Underpinning research ,Heterochromatin ,Schizosaccharomyces ,Genetics ,Generic health relevance ,Gene Silencing ,Schizosaccharomyces pombe Proteins ,Molecular Biology ,Genetics (clinical) ,Ecology, Evolution, Behavior and Systematics ,Developmental Biology ,Transcription Factors - Abstract
Heterochromatin spreading, the expansion of repressive chromatin structure from sequence-specific nucleation sites, is critical for stable gene silencing. Spreading re-establishes gene-poor constitutive heterochromatin across cell cycles but can also invade gene-rich euchromatin de novo to steer cell fate decisions. How chromatin context (i.e. euchromatic, heterochromatic) or different nucleation pathways influence heterochromatin spreading remains poorly understood. Previously, we developed a single-cell sensor in fission yeast that can separately record heterochromatic gene silencing at nucleation sequences and distal sites. Here we couple our quantitative assay to a genetic screen to identify genes encoding nuclear factors linked to the regulation of heterochromatin nucleation and the distal spreading of gene silencing. We find that mechanisms underlying gene silencing distal to a nucleation site differ by chromatin context. For example, Clr6 histone deacetylase complexes containing the Fkh2 transcription factor are specifically required for heterochromatin spreading at constitutive sites. Fkh2 recruits Clr6 to nucleation-distal chromatin sites in such contexts. In addition, we find that a number of chromatin remodeling complexes antagonize nucleation-distal gene silencing. Our results separate the regulation of heterochromatic gene silencing at nucleation versus distal sites and show that it is controlled by context-dependent mechanisms. The results of our genetic analysis constitute a broad community resource that will support further analysis of the mechanisms underlying the spread of epigenetic silencing along chromatin.
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- 2021
32. Impact of SARS-CoV-2 infection on vaccine-induced immune responses over time
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Sara M. Mangsbo, Sophia Hober, Max Gordon, Peter Nilsson, Charlotte Thålin, Henry Ng, Jonas Klingström, Mia Phillipson, Nina Greilert-Norin, Kim Blom, Ulrika Marking, Sebastian Havervall, Mikael Åberg, and Wanda Christ
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biology ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Serology ,Vaccination ,Titer ,Immune system ,Post vaccination ,Immunology ,biology.protein ,Medicine ,Sampling time ,business ,Neutralizing antibody - Abstract
Background Recent serological investigations imply waning immune responses following SARS-CoV-2 vaccination, but prior infection may impact the breadth and duration of vaccine immune responses. Methods Using longitudinally collected blood samples from the COMMUNITY study, we determined binding (WHO BAU/ml) and neutralizing antibody titers against ten SARS-CoV-2 variants over seven months following BNT162b2 in healthcare workers with (n=111) and without (n=298) confirmed prior SARS-CoV-2 infection. A smaller group with (n=47) and without (n=61) confirmed prior SARS-CoV-2 infection receiving ChAdOx1 ncov-19 was followed for three months. Results Vaccination (BNT162b2 and ChAdOx1 ncov-19) following SARS-CoV-2 infection resulted in higher wild-type BAU/ml geometric mean titers (GMTs) at all sampling time points when compared to SARS-CoV-2 naive vaccinees (all p
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- 2021
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33. Neutralization of VOCs including Delta one year post COVID-19 or vaccine
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Mikael Åberg, Peter Nilsson, Ulrika Marking, Max Gordon, Kim Blom, Charlotte Thålin, Henry Ng, Jonas Klingstrom, Sophia Hober, Sara M. Mangsbo, Sarah Lindbo, Nina Greilert-Norin, Mia Phillipson, and Sebastian Havervall
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Delta ,Coronavirus disease 2019 (COVID-19) ,biology ,business.industry ,Wild type ,Alpha (ethology) ,Heterologous ,Virology ,Neutralization ,biology.protein ,Medicine ,Antibody ,Beta (finance) ,business - Abstract
BackgroundSARS-CoV-2 variants, such as Alpha, Beta, Gamma and Delta, are raising concern about the efficiency of neutralizing antibodies (NAb) induced by wild-type infection or vaccines based on the wild-type spike.MethodsWe determined IgG and NAb against SARS-CoV-2 variants one year following mild wild-type infection (n=104) and two-dose regimens with BNT162b2 (BNT/BNT) (n=67), ChAdOx1 (ChAd/ChAd) (n=82), or heterologous ChAdOx1 followed by BNT162b2 (ChAd/BNT) (n=116).FindingsWild type spike IgG and NAb remained detectable in 80% (83/104) of unvaccinated participants one year post mild infection. The neutralizing capacity was similar against wild type (reference), Alpha (0.95 (0.92-0.98) and Delta 1.03 (0.95-1.11) but significantly reduced against Beta (0.54 (0.48-0.60)) and Gamma 0.51 (0.44-0.61). Similarly, BNT/BNT and ChAd/ChAd elicited sustained capacity against Alpha and Delta (1.01 (0.78-1.31) and 0.85 (0.64-1.14)) and (0.96 (0.84-1.09) and 0.82 (0.61-1.10) respectively), with reduced capacity against Beta (0.67 (0.50-0.88) and 0.53 (0.40-0.71)) and Gamma (0.12 (0.06-0.27) and 0.54 (0.37-0.80)). A similar trend was found following ChAd/BNT (0.74 (0.66-0.83) and 0.70 (0.50-0.97) against Alpha and Delta and 0.29 (0.20-0.42) and 0.13 (0.08-0.20) against Beta and Gamma).InterpretationPersistent neutralization of the wide-spread Alpha and Delta variants one year after wild-type infection may aid vaccine policy makers in low-resource settings when prioritizing vaccine supply. The reduced capacity of neutralizing Beta and Gamma strains, but not the Alpha and Delta strains following both infection and three different vaccine regimens argues for caution against Beta and Gamma-exclusive mutations in the efforts to optimize next generation SARS-CoV-2 vaccines.FundingA full list of funding bodies that contributed to this study can be found in the Acknowledgements section
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- 2021
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34. Antibody responses after a single dose of ChAdOx1 nCoV-19 vaccine in healthcare workers previously infected with SARS-CoV-2
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Henry Ng, Mia Phillipson, Kim Blom, Ulrika Marking, Sara M. Mangsbo, Peter Nilsson, Ann-Christin Salomonsson, Sophia Hober, Sebastian Havervall, Charlotte Thålin, Max Gordon, Jonas Klingstrom, Nina Greilert-Norin, Mikael Åberg, Cecilia Hellström, and Elisa Pin
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Adult ,Male ,Infectious Medicine ,Medicine (General) ,Research paper ,COVID-19 Vaccines ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Health Personnel ,Neutralizing antibody response ,Immunization, Secondary ,Infektionsmedicin ,General Biochemistry, Genetics and Molecular Biology ,Serology ,Immune system ,R5-920 ,Prior infection ,ChAdOx1 nCoV-19 ,Blocking antibody ,Medicine ,Humans ,skin and connective tissue diseases ,BNT162 Vaccine ,BNT162b2 vaccine ,biology ,business.industry ,SARS-CoV-2 ,fungi ,Vaccination ,Wild type ,COVID-19 ,General Medicine ,Middle Aged ,Antibodies, Neutralizing ,body regions ,Regimen ,Immunoglobulin G ,Immunology ,Antibody Formation ,Spike Glycoprotein, Coronavirus ,biology.protein ,Female ,Antibody ,business - Abstract
Background Recent reports demonstrate robust serological responses to a single dose of messenger RNA (mRNA) vaccines in individuals previously infected with SARS-CoV-2. Data on immune responses following a single-dose adenovirus-vectored vaccine expressing the SARS-CoV-2 spike protein (ChAdOx1 nCoV-19) in individuals with previous SARS-CoV-2 infection are however limited, and current guidelines recommend a two-dose regimen regardless of preexisting immunity. Methods We compared RBD-specific IgG and RBD-ACE2 blocking antibodies against SARS-CoV-2 wild type and variants of concern following two doses of the mRNA vaccine BNT162b2 in SARS-CoV-2 naive healthcare workers (n=65) and a single dose of the adenovector vaccine ChAdOx1 nCoV-19 in 82 healthcare workers more than (n=45) and less than (n=37) 11 months post mild SARS-CoV-2 infection at time of vaccination. Findings The post-vaccine levels of RBD-specific IgG and neutralizing antibodies against the SARS-CoV-2 wild type and variants of concern including Delta lineage 1.617.2 were similar or higher in participants receiving a single dose of ChAdOx1 nCoV-19 vaccine post SARS-CoV-2 infection (both more than and less than 11 months post infection) compared to SARS-CoV-2 naive participants who received two doses of BNT162b2 vaccine. Interpretation Our data support that a single dose ChAdOx1 nCoV-19 vaccine that is administered up to at least 11 months post SARS-CoV-2 infection serves as an effective immune booster. This provides a possible rationale for a single-dose vaccine regimen. Funding A full list of funding bodies that contributed to this study can be found in the Acknowledgements section
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- 2021
35. Polymorphism Of The APM1 Gene In Subjects With Central Obesity Related To Lower High-Density Lipoprotein Cholesterol
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Melisa I. Barliana, Rizky Abdulah, Poppy D Yolanda, Sofa D. Alfian, Tina Rostinawati, Ajeng Diantini, and Henry Ng
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Pharmacology ,education.field_of_study ,medicine.medical_specialty ,Adiponectin ,medicine.diagnostic_test ,business.industry ,Population ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,medicine.disease ,Obesity ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Internal medicine ,Diabetes mellitus ,Genotype ,Internal Medicine ,medicine ,Metabolic syndrome ,education ,Lipid profile ,business - Abstract
Background Central obesity is a risk factor for metabolic syndrome. Subjects with central obesity have a higher risk of developing type 2 diabetes and cardiovascular disease. Many conditions affect the prevalence of central obesity, including energy expenditure, aging, proinflammatory conditions, and hormonal, genetic, and ethnic differences. Polymorphism of the APM1 gene, encoding the protein adiponectin, is closely related to metabolic syndrome. Adiponectin influences fatty acid oxidation and glucose intake in muscle. Therefore, variation in the APM1 gene is associated with diabetes and obesity. Purpose The aim of the present study was to investigate the correlation of the single-nucleotide polymorphism (SNP) of the APM1 SNP rs2241766 with body mass index (BMI) and lipid profiles in Indonesian (Bandung) subjects. Patients and methods Genotyping of the APM1 gene was performed using the Amplification Refractory Mutation System. Whole blood and serum of 54 subjects with central obesity (waist circumference [WC] ≥90 cm) and 53 healthy subjects (WC
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- 2019
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36. Delivering Holistic Transgender and Nonbinary Care in the Age of Telemedicine and COVID-19: Reflections and Implications for Best Practices
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Henry, Ng, Lyndsay, Zimmerman, Bailey, Ferguson, Elizabeth, Dimmock, Richard, Harlan, James, Hekman, and Hiba, Obeid
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Sexual and Gender Minorities ,SARS-CoV-2 ,COVID-19 ,Humans ,Healthcare Disparities ,Transgender Persons ,Health Services Accessibility ,Telemedicine - Abstract
This review describes the authors' experiences in offering gender-affirming primary care and hormonal care using an evidence-based, interprofessional, and multidisciplinary approach. The authors offer references for best practices set forth by organizations and thought leaders in transgender health and describe the key processes they developed to respectfully deliver affirming care to transgender and nonbinary patients.
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- 2021
37. Development and implementation of nested single‐nucleotide polymorphism (SNP) assays for breeding and genetic research applications
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Qijian Song, Charles Quigley, Ruifeng He, Dechun Wang, Henry Nguyen, Carrie Miranda, and Zenglu Li
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Plant culture ,SB1-1110 ,Genetics ,QH426-470 - Abstract
Abstract SoySNP50K and SoySNP6K are commonly used for soybean (Glycine max) genotyping. The SoySNP50K assay has been used to genetically analyze the entire USDA Soybean Germplasm Collection, while the SoySNP6K assay, containing a subset of 6000 single‐nucleotide polymorphisms (SNPs) from SoySNP50K, has been used for quantitative trait loci mapping of different traits. To meet the needs for genomic selection, selection of parents for crosses, and characterization of breeding populations, especially early selection of ideal offspring from thousands of lines, we developed two assays, SoySNP3K and SoySNP1K, containing 3072 and 1252 SNPs, respectively, based on SoySNP50K and SoySNP6K mark sets. These two assays also contained the trait markers reported or contributed by soybean breeders. The SNPs in the SoySNP3K are a subset from SoySNP6K, while the SNPs in the SoySNP1K are a subset from SoySNP3K. These SNPs were chosen to reduce the SNP number in the large linkage blocks while capturing as much of the haplotype diversity as possible. They are highly polymorphic and of high quality. The mean minor allele frequencies of the SNPs in the southern and northern US elites were 0.25 and 0.27 for SoySNP3K, respectively, and 0.29 and 0.33 for SoySNP1K. The selected SNPs are a valuable source for developing targeted amplicon sequencing assay or beadchip assay in soybean. SoySNP3K and SoySNP1K assays are commercialized by Illumina Inc. and AgriPlex Genomics, respectively. Together with SoySNP50K and SoySNP6K, a series of nested assays with different marker densities will serve as additional low‐cost genomic tools for genetic, genomic, and breeding research.
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- 2024
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38. BDNF val66met genotype is not associated with psychological distress: A cross-sectional study in Indonesian Pharmacy young adults
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Henry, Ng, Sofa Dewi, Alfian, Rizky, Abdulah, and Melisa I, Barliana
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Young Adult ,Cross-Sectional Studies ,Genotype ,Indonesia ,Brain-Derived Neurotrophic Factor ,Humans ,Female ,Pharmacy ,General Medicine ,Psychological Distress ,Polymorphism, Single Nucleotide - Abstract
The number of mental disorders has been increasing but has yet to receive sufficient attention. In particular, healthcare students and professionals tend to have high stress burden. Finding the root cause of psychological distress is important to formulate a method for early detection and prevention. The association of brain-derived neurotrophic factor val66met polymorphism to neuropsychiatric disorders has been widely studied. To study the interplay between brain-derived neurotrophic factor val66met polymorphism and sociodemographic factors in the pathogenesis of psychological distress among Indonesian Pharmacy students. Level of psychological distress and sociodemographic profiling was collected by using the Kessler Psychological Distress Scale and sociodemographic questionnaires, respectively. Genotyping was performed using polymerase chain reaction-amplified refractory mutation system. Pearson's chi square and binomial logistic tests were used to evaluate the correlation. This study recruited 148 participants. The psychological distress levels of the participants were well (27.03%), mild (37.16%), moderate (25.00%), and severe (10.81%). Genotypic distributions were AA (25.67%), GA (50.68%), and GG (23.65%). No statistical significance between genotype and psychological distress was found in the study (P = .076). The sociodemographic factors also showed non significance, except for the source of tuition fee among women students (P = .049). Psychological distress is not affected by genotypic and sociodemographic factors. Further confirmatory research with larger and broader populations is required.
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- 2022
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39. Tissue ischemia induces mobilization of pro-angiogenic neutrophils from the spleen
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Catarina Leite, Kristel Parv, Cédric Seignez, Henry Ng, Robin S Lindsay, Gustaf Christoffersson, and Mia Phillipson
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Immunology ,Immunology and Allergy - Abstract
Pro-angiogenic neutrophils (PAN) form a small subset of circulating neutrophils expressing CD49d+ VEGFR1hi CXCR4hi, which play a crucial role in the revascularization of transplanted islets. To determine the role of PANs in re-establishing tissue perfusion following a large ischemic event we used the mouse model for peripheral artery disease, the hindlimb ischemia (HLI) model. We found that numbers of PANs in the affected gastrocnemius muscle increased ≈4 times 3h following ischemia induction and reached its peak 2 days following ischemia onset. Similarly, in patients undergoing surgery where peripheral perfusion is transiently clamped, numbers of circulating PANs increase ≈3 times 30 min post-HLI. In healthy mice, PANs are found in high frequency in the spleen (spleen: 9,8% of total neutrophils, blood: 0,78%). Splenectomy prior to induction of HLI reduced recruitment of PANs to the ischemic muscle, which demonstrates that the spleen acts as a reservoir for PANs. Furthermore, HLI downregulated the CXCR4-ligand CXCL12α in the splenic red pulp. This was prevented by chemically induced sympathectomy, resulting in increased retention of PANs in spleen, reduced PAN accumulation in the ischemic muscle and reduced blood flow recovery. Therefore, we propose that the downregulation of CXCL12α controlled by sympathetic nerve signaling pathways drives retention of PANs in the spleen, thereby regulating their release in response to HLI. In summary, we identified that the spleen contains a peripheral pool of PANs and emphasize the pivotal role of the neuro-immune axis in the recruitment of PANs to the site of ischemia. These discoveries open new avenues for drug development to limit damage and accelerate healing following ischemic events. This study was supported by the Swedish Research Council, Knut and Alice Wallenberg foundation, The Swedish Cancer Society, and O. E. and Edla Johansson’s foundation.
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- 2022
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40. SARS-CoV-2 induces a durable and antigen specific humoral immunity after asymptomatic to mild COVID-19 infection
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Cecilia Hellström, Charlotte Thålin, Jonas Klingström, Eni Andersson, Lena Gabrielsson, Sara M. Mangsbo, Jamil Yousef, Jennie Olofsson, Anna Månberg, Elisa Pin, Mia Phillipson, Ann-Christine Salomonsson, Nina Greilert Norin, Peter Nilsson, Henry Ng, Wanda Christ, Eva Isaksson, August Jernbom Falk, Mikaela Olausson, My Hedhammar, Sebastian Havervall, Ann-Sofie Rudberg, Lovisa Skoglund, Sophia Hober, and Hanna Tegel
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education.field_of_study ,biology ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Population ,Asymptomatic ,Serology ,Antigen ,Immunology ,Humoral immunity ,biology.protein ,medicine ,Microneutralization Assay ,Antibody ,medicine.symptom ,business ,education - Abstract
Current SARS-CoV-2 serological assays generate discrepant results, and the longitudinal characteristics of antibodies targeting various antigens after asymptomatic to mild COVID-19 are yet to be established. This longitudinal cohort study including 1965 healthcare workers, of which 381 participants exhibited antibodies against the SARS-CoV-2 spike antigen at study inclusion, reveal that these antibodies remain detectable in most participants, 96%, at least four months post infection, despite having had no or mild symptoms. Virus neutralization capacity was confirmed by microneutralization assay in 91% of study participants at least four months post infection. Contrary to antibodies targeting the spike protein, antibodies against the nucleocapsid protein were only detected in 80% of previously anti-nucleocapsid IgG positive healthcare workers. Both anti-spike and anti-nucleocapsid IgG levels were significantly higher in previously hospitalized COVID-19 patients four months post infection than in healthcare workers four months post infection (p=2*10−23 and 2*10−13 respectively). Although the magnitude of humoral response was associated with disease severity, our findings support a durable and functional humoral response after SARS-CoV-2 infection even after no or mild symptoms. We further demonstrate differences in antibody kinetics depending on the antigen, arguing against the use of the nucleocapsid protein as target antigen in population-based SARS-CoV-2 serological surveys.
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- 2021
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41. Towards a 'Social Justice Ecosystem Framework' for Enhancing Livelihoods and Sustainability in Pastoralist Communities
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Charles Fonchingong Che and Henry Ngenyam Bang
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social justice ,pastoralists ,livelihoods ,indigenous ,political ecology ,ecosystem ,Social sciences (General) ,H1-99 - Abstract
Aimed at understanding how pastoralist livelihoods are affected within the Northwest Region of Cameroon, this article explores the nexus of social justice, indigenous know-how, livelihoods, social security, and sustainability through a political ecology lens. Through a qualitative case study based on in-depth interviews with 59 key informants, this study departs from existing literature by exploring the linkages that exacerbate risks and vulnerabilities for pastoralist livelihoods. We situate the contending issues through emerging data and analysis, which highlight indigenous elements that sustain pastoralist livelihoods (coping strategies and sustenance) and identify diversified barriers that impede pastoralists’ sense of social justice and community-mindedness. Other intersecting pointers identified relate to environmental interactions, social security, sustainability, and decision-making within local and national governance mechanisms that either enhance or impede sustainable development. We proposed a social justice ecosystem framework (SJEF) that uncovers the enmeshments of social justice, social security, indigenous know-how, and livelihoods, with implications for sustainable development. The framework makes a compelling case for co-produced policies; implementing symbiotic social justice-based policies is mandatory, encapsulating thriving aspects of pastoralists’ unique traditions, which are often missed by governments and agencies in social community development planning and sustainable development initiatives.
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- 2024
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42. SARS-CoV-2 exposure, symptoms and seroprevalence in health care workers
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Anna Månberg, Charlotte Thålin, Ann-Sofie Rudberg, Katherina Aguilera, Jennie Olofsson, Sofia Bergström, Elisa Pin, Sebastian Havervall, Benjamin Murell, Mia Phillipson, Ronald Sjöberg, Lena Gabrielsson, Cecilia Hellström, Ann-Christin Salomonsson, Sophia Hober, My Hedhammar, Shaghayegh Bayati, Leo Hanke, Hanna Tegel, August Jernbom Falk, Gerald M. McInerney, Peter Nilsson, Henry Ng, and Eni Andersson
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education.field_of_study ,medicine.medical_specialty ,business.industry ,Population ,Anosmia ,Outbreak ,Odds ratio ,Occupational safety and health ,Acute care ,Environmental health ,Health care ,Seroprevalence ,Medicine ,medicine.symptom ,business ,education - Abstract
BackgroundSARS-CoV-2 may pose an occupational health risk to health care workers, but the prevalence of infections in this population is unknown. We examined the seroprevalence of SARS-CoV-2 antibodies among health care workers at a large acute care hospital in Stockholm, Sweden. We determined correlations between seroprevalence, self-reported symptoms and occupational exposure to SARS-CoV-2.Methods and findingsAll employees at Danderyd Hospital (n=4375) were invited to participate in a cross-sectional study. 2149 employees from all hospital departments were enrolled in the study between April 14th and May 8th 2020. Study participants completed a questionnaire consisting of symptoms compatible with SARS-CoV-2 infection since January 2020 and occupational exposure to patients infected with SARS-CoV-2. IgG antibodies against SARS-CoV-2 were analyzed using a multiplex assay evaluated to have 99.4% sensitivity and 99.1% specificity. The over-all seroprevalence among 2149 participants was 19.1% (n=410). There was no difference in age or sex between seropositive and seronegative participants. The symptoms with the strongest correlation to seroprevalence were anosmia and ageusia, with odds ratios of 28.4 (p=2.02*10^-120) and 19.2 (p=1.67*10^-99) respectively. Seroprevalence was strongly associated with patient-related work (OR 2.9, p=4.24*10^-8), covid-19 patient contact (OR 1.43, p=0.003), and occupation as assisting nurse (OR 3.67, p=2.16*10^-9).ConclusionThese results demonstrate that anosmia and ageusia should be included in screening guidance and in the recommendations of self-isolation to reduce further spread of SARS-CoV-2. The results furthermore imply an occupational health risk for SARS-CoV-2 infection among hospital workers. Continued measures are warranted to assure healthcare worker safety and reduce transmission from health care settings to the community during the covid-19 outbreak.
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- 2020
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43. BDNF val66met genotype is not associated with psychological distress: A cross-sectional study in Indonesian young adults
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Henry Ng, Sofa Dewi Alfian, Rizky Abdulah, and Melisa Intan Barliana
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Background The number of mental disorders has been increasing but has yet to receive sufficient attention. Healthcare students and professionals tend to have high stress burden. Finding the root cause of psychological distress is important to formulate a method for early detection. The association of BDNF val66met polymorphism to neuropsychiatric disorders has been widely studied. The aim of this study was to interplay between BDNF val66met polymorphism and sociodemographic factors in the pathogenesis of psychological distress among Indonesian students. Methods Level of psychological distress and sociodemographic profiling was assessed using the Kessler Psychological Distress Scale (K10) and sociodemographic questionnaires, respectively. Genotyping was performed using polymerase chain reaction-amplified refractory mutation system. Pearson’s chi square and binomial logistic tests were used to evaluate the correlation. Results This study recruited 148 participants. The psychological distress levels of the participants were well (27.03%), mild (37.16%), moderate (25.00%), and severe (10.81%). Genotypic distributions were AA (25.67%), GA (50.68%), and GG (23.65%). No statistical significance was found in the study (p > 0.05). Conclusion Psychological distress is not affected by genotypic and environmental factors. Further confirmatory research with larger and broader populations is required.
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- 2020
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44. Local chromatin context dictates the genetic determinants of the heterochromatin spreading reaction
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Sigurd Braun, R A Greenstein, Ramón R. Barrales, Bassem Al-Sady, Catherine L. Tan, and Henry Ng
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Euchromatin ,Heterochromatin ,1.1 Normal biological development and functioning ,Context (language use) ,Cell fate determination ,Biology ,Chromatin ,Cell biology ,Underpinning research ,Histone deacetylase complex ,Genetics ,Constitutive heterochromatin ,Generic health relevance ,Transcription factor - Abstract
Author(s): Greenstein, RA; Ng, Henry; Barrales, Ramon; Tan, Catherine; Braun, Sigurd; Al-Sady, Bassem | Abstract: ABSTRACT Heterochromatin spreading, the expansion of gene-silencing structures from DNA-encoded nucleation sites, occurs in distinct settings. Spreading re-establishes gene-poor constitutive heterochromatin every cell cycle, but also invades gene-rich euchromatin de novo to steer cell fate decisions. How chromatin context, i.e. euchromatic, heterochromatic, or different nucleator types, influences the determinants of this process remains poorly understood. By screening a nuclear function gene deletion library in fission yeast using a previously established heterochromatin spreading sensor system, we identified regulators that positively or negatively alter the propensity of a nucleation site to spread heterochromatin. We find that different chromatin contexts are dependent on unique sets of genes for the regulation of heterochromatin spreading. Further, we find that spreading in constitutive heterochromatin requires Clr6 histone deacetylase complexes containing the Fkh2 transcription factor, while the Clr3 deacetylase is globally required for silencing. Fkh2 acts by recruiting Clr6 to nucleation-distal chromatin sites. Our results segregate the pathways that control lateral heterochromatin spreading from those that instruct DNA-directed assembly in nucleation.
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- 2020
45. The Choice of Exchange Rate Regime and the Volatility of Exchange Rates after the Asian Crisis: A Counterfactual Analysis
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Wilson, Peter and Ren, Henry Ng Shang
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Money -- Analysis ,Foreign exchange -- Prices and rates ,Foreign exchange -- Analysis ,Business, international ,Economics - Abstract
To purchase or authenticate to the full-text of this article, please visit this link: http://dx.doi.org/10.1111/j.1467-9701.2007.01046.x Byline: Peter Wilson (1), Henry Ng Shang Ren (1) Abstract: The objective of this paper is to carry out a counterfactual analysis of the impact of alternative exchange rate regimes on the volatility of the nominal effective exchange rate (NEER) and the bilateral rate against the US dollar for nine East Asian countries after the Asian financial crisis. Our hypothetical regimes include a unilateral basket peg (UBP), a common basket peg (CBP) and a hard peg against the dollar. We find that a UBP would minimise effective exchange rate volatility for all countries and provides the highest regime gains compared to actual. Although the gains for a CBP are always less than those for a UBP, the absolute differences between the two regimes appear to be small. In terms of the bilateral relationship against the dollar, the gains from a UBP or CBP could be quite significant for the non-dollar peggers since a fall in effective instability would be accompanied by a fall in bilateral instability.
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- 2007
46. Psychological Distress Induces Poor Sleep Quality: A Cross-Sectional Study of Pharmacy Students in Bandung City, Indonesia
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Sofa D. Alfian, Rizky Abdulah, Henry Ng, and Dika P. Destiani
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Community and Home Care ,Gerontology ,Health (social science) ,Multivariate analysis ,Sleep quality ,Cross-sectional study ,business.industry ,media_common.quotation_subject ,Public Health, Environmental and Occupational Health ,Psychological distress ,Pharmacy ,Poor sleep ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,Quality (business) ,030212 general & internal medicine ,business ,030217 neurology & neurosurgery ,media_common - Abstract
Introduction: Poor subjective sleep quality in undergraduate students has not been widely studied in Bandung city, Indonesia. Poor sleep quality has been related to a number of risk factors for poor health outcomes. Objective: To analyze the association between psychological distress and subjective sleep quality. Methods: A cross sectional survey was done in one of the universities of Bandung city, Indonesia. Data were collected from 290 undergraduate students selected through consecutive sampling. Pittsburg Sleep Quality Index (PSQI) and Kessler-10 questionnaire were administered. Results: The prevalence of psychological distress was well (43.1%), mild (28.6%), moderate (20.7%), and severe (7.6%). The overall sleep quality was poor and good in 84.5% and 15.5% of the students. There was a significant association between psychological distress and poor sleep quality (p=0.006). The multivariate analysis suggested that psychological distress was a predictor of poor sleep quality (OR 1.991; 95% CI, 1.311−3.026). Conclusion: There is a need for an awareness of the college resources to help manage the stress levels of students through effective coping strategy-related study habits.
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- 2018
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47. Five hole probe errors caused by fluctuating incidence
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John Coull, Tony Dickens, Henry Ng, and José Serna
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Steady multi-hole pressure probes are used extensively in turbomachinery research. While various sources of error are known, this paper demonstrates that fluctuations in probe incidence can be particularly damaging for accuracy. A simple, quasi-steady model of five-hole-probe response explains why angle fluctuations can cause large errors in the indicated total and static pressure. The model explains why measurements in a shedding wake over-estimated loss by 40%. Simulated traverses behind rotors show similar behavior: fluctuating incidence causes efficiency to be under-estimated by over 1% in some cases. The model can correct five-hole-probe errors using an estimate of unsteady flow angles. This approach reduces errors by an order of magnitude and can be used to post-correct existing test data.
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- 2022
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48. S2528 Conservative vs Surgical Management of Benign Idiopathic Pyloric Stenosis in Adults: An Atypical Entity
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Henry Ng, Tarini Gunaratne, and Hassan Siddiki
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medicine.medical_specialty ,Hepatology ,business.industry ,Gastroenterology ,Medicine ,business ,medicine.disease ,Pyloric stenosis ,Surgery - Published
- 2021
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49. Polymorphism Of The
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Melisa I, Barliana, Poppy D, Yolanda, Tina, Rostinawati, Henry, Ng, Sofa D, Alfian, Rizky, Abdulah, and Ajeng, Diantini
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rs2241766 ,adiponectin ,SNP ,waist circumference ,metabolic syndrome ,Original Research - Abstract
Background Central obesity is a risk factor for metabolic syndrome. Subjects with central obesity have a higher risk of developing type 2 diabetes and cardiovascular disease. Many conditions affect the prevalence of central obesity, including energy expenditure, aging, proinflammatory conditions, and hormonal, genetic, and ethnic differences. Polymorphism of the APM1 gene, encoding the protein adiponectin, is closely related to metabolic syndrome. Adiponectin influences fatty acid oxidation and glucose intake in muscle. Therefore, variation in the APM1 gene is associated with diabetes and obesity. Purpose The aim of the present study was to investigate the correlation of the single-nucleotide polymorphism (SNP) of the APM1 SNP rs2241766 with body mass index (BMI) and lipid profiles in Indonesian (Bandung) subjects. Patients and methods Genotyping of the APM1 gene was performed using the Amplification Refractory Mutation System. Whole blood and serum of 54 subjects with central obesity (waist circumference [WC] ≥90 cm) and 53 healthy subjects (WC
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- 2019
50. Elav-mediated exon skipping and alternative polyadenylation of the Dscam1 gene is required for axon outgrowth
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Yong Zhang, Jung Hwan Kim, Henry Ng, Matthew Bauer, Zhiping Zhang, Kevin So, Ryan L. Peterson, Pedro Miura, and Thomas Kidd
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Gene isoform ,Untranslated region ,0303 health sciences ,Polyadenylation ,biology ,Alternative splicing ,biology.organism_classification ,Exon skipping ,Cell biology ,03 medical and health sciences ,Exon ,0302 clinical medicine ,RNA splicing ,Drosophila melanogaster ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
SummaryMany metazoan genes express alternative long 3′ UTR isoforms in the nervous system, but their functions remain largely unclear. In Drosophila melanogaster, the Dscam1 gene generates short and long (Dscam1-L) 3′ UTR isoforms due to alternative polyadenylation (APA). Here, we found that the RNA-binding protein Embryonic Lethal Abnormal Visual System (Elav) impacts Dscam1 biogenesis at two levels, including regulation of long 3′ UTR biogenesis and skipping of an upstream exon (exon 19). MinION long-read sequencing confirmed the connectivity of this alternative splicing event to the long 3′ UTR. Knockdown or CRISPR deletion of Dscam1-L impaired axon growth in Drosophila. The Dscam1 long 3′ UTR was found to be required for correct Elav-mediated skipping of exon 19. Elav thus co-regulates APA and alternative splicing to generate specific Dscam1 transcripts that are essential for neural development. This coupling of APA to alternative splicing might represent a new class of regulated RNA processing. Graphical AbstractHighlightsElav regulates Dscam1 long 3′ UTR (Dscam1-L) biogenesisLong-read sequencing reveals connectivity of long 3′ UTR to skipping of upstream exon 19Loss of Dscam1-L impairs axon outgrowthDscam1 long 3′ UTR is required for correct splicing of exon 19
- Published
- 2019
- Full Text
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