10 results on '"Heng Ning Wu"'
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2. Development of an efficient one-step real-time reverse transcription polymerase chain reaction method for severe acute respiratory syndrome-coronavirus-2 detection.
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Yukiko Nakura, Heng Ning Wu, Yuya Okamoto, Muneyuki Takeuchi, Koichiro Suzuki, Yoshitaka Tamura, Yuichiro Oba, Fumiko Nishiumi, Nobuaki Hatori, Shinsuke Fujiwara, Kiyoshi Yasukawa, Shinobu Ida, and Itaru Yanagihara
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Medicine ,Science - Abstract
The general methods to detect the RNA of severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) in clinical diagnostic testing involve reverse transcriptases and thermostable DNA polymerases. In this study, we compared the detection of SARS-CoV-2 by a one-step real-time RT-PCR method using a heat-resistant reverse transcriptase variant MM4 from Moloney murine leukemia virus, two thermostable DNA polymerase variants with reverse transcriptase activity from Thermotoga petrophila K4 and Thermococcus kodakarensis KOD1, or a wild-type DNA polymerase from Thermus thermophilus M1. The highest performance was achieved by combining MM4 with the thermostable DNA polymerase from T. thermophilus M1. These enzymes efficiently amplified specific RNA using uracil-DNA glycosylase (UNG) to remove contamination and human RNase P RNA amplification as an internal control. The standard curve was obtained from 5 to 105 copies of synthetic RNA. The one-step real-time RT-PCR method's sensitivity and specificity were 99.44% and 100%, respectively (n = 213), compared to those of a commercially available diagnostic kit. Therefore, our method will be useful for the accurate detection and quantification of SARS-CoV-2.
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- 2021
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3. Type II restriction modification system in Ureaplasma parvum OMC-P162 strain.
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Heng Ning Wu, Yukiko Nakura, Michinobu Yoshimura, Ourlad Alzeus Gaddi Tantengco, Makoto Nomiyama, Toshimitsu Takayanagi, Tomio Fujita, Kiyoshi Yasukawa, and Itaru Yanagihara
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Medicine ,Science - Abstract
Ureaplasma parvum serovar 3 strain, OMC-P162, was isolated from the human placenta of a preterm delivery at 26 weeks' gestation. In this study, we sequenced the complete genome of OMC-P162 and compared it with other serovar 3 strains isolated from patients with different clinical conditions. Ten unique genes in OMC-P162, five of which encoded for hypothetical proteins, were identified. Of these, genes UPV_229 and UPV_230 formed an operon whose open reading frames were predicted to code for a DNA methyltransferase and a hypothetical protein, respectively. DNA modification analysis of the OMC-P162 genome identified N4-methylcytosine (m4C) and N6-methyladenine (m6A), but not 5-methylocytosine (m5C). UPV230 recombinant protein displayed endonuclease activity and recognized the CATG sequence, resulting in a blunt cut between A and T. This restriction enzyme activity was identical to that of the cultivated OMC-P162 strain, suggesting that this restriction enzyme was naturally expressed in OMC-P162. We designated this enzyme as UpaP162. Treatment of pT7Blue plasmid with recombinant protein UPV229 completely blocked UpaP162 restriction enzyme activity. These results suggest that the UPV_229 and UPV_230 genes act as a type II restriction-modification system in Ureaplasma OMC-P162.
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- 2018
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4. Structure and Function of Gli123 Involved in Mycoplasma mobile Gliding
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Daiki Matsuike, Yuhei O. Tahara, Takahiro Nonaka, Heng Ning Wu, Tasuku Hamaguchi, Hisashi Kudo, Yuuki Hayashi, Munehito Arai, and Makoto Miyata
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Molecular Biology ,Microbiology - Abstract
Mycoplasma mobile is a fish pathogen that glides on solid surfaces by means of a unique mechanism. The gliding machinery of M. mobile is composed of internal and surface structures. In the present study, we focused on the function and structure of Gli123, a surface protein that is essential for the localization of other surface proteins. The amino acid sequence of Gli123, which is 1128 amino acids long, contains lipoprotein-specific repeats. We isolated the native Gli123 protein from M. mobile cells and a recombinant protein, rGli123, from Escherichia coli. The isolated rGli123 complemented a non-binding and non-gliding mutant of M. mobile that lacked Gli123. Circular dichroism and rotary-shadowing electron microscopy (EM) showed that rGli123 has a structure that is not significantly different from that of the native protein. Rotary-shadowing EM suggested that the molecules changed their shape between globular and rod-like structures, depending on the ionic strength of the solution. Negative-staining EM coupled with single-particle analysis revealed that Gli123 forms a globular structure featuring a small protrusion with dimensions of 20.0, 14.5, and 16.0 nm. Small-angle X-ray scattering analyses indicated a rod-like structure composed of several tandem globular domains with total dimensions of approximately 34 nm length and 4 nm width. Both molecular structures were suggested to be dimers based on the predicted molecular size and structure. Gli123 may have evolved by multiplication of repeating lipoprotein units and acquired clumping role of surface proteins.IMPORTANCEMycoplasmas are pathogenic bacteria that are widespread in animals. They are characterized by small cell and genome sizes but are equipped with unique abilities to escape host immunity, such as surface variation and gliding. Here, we focused on a surface-localizing protein that is essential for Mycoplasma mobile gliding. The findings of this study suggested that the protein undergoes drastic conformational changes between its rod-like and globular structures. These changes may be caused by a repetitive structure common in the surface proteins that is responsible for the modulation of the cell surface structure and related to the assembly process for the surface gliding machinery. An evolutionary process for this unique mycoplasma gliding mechanism has also been suggested in the present study.
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- 2023
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5. Ability of Ureaplasma parvum to invade mouse sperm, fertilize eggs through infected sperm, and impair mouse sperm function and embryo development
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Kazutoshi Ito, Heng Ning Wu, Yukiko Nakura, Yuichi Kawai, Itaru Yanagihara, Akira Onodera, Teru Kurata, Shin'ichiro Kajiyama, Fumiko Nishiumi, and Kazuki Akai
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Male ,endocrine system ,urogenital system ,Ureaplasma Infections ,animal diseases ,Embryogenesis ,Embryonic Development ,Motility ,Biology ,Spermatozoa ,Ureaplasma ,Sperm ,Andrology ,Mice ,Human fertilization ,Ureaplasma parvum ,Fertilization ,Electron micrographs ,parasitic diseases ,Sperm Motility ,Animals ,reproductive and urinary physiology ,Sperm motility ,Function (biology) - Abstract
Objective To examine the effect of Ureaplasma parvum (U. parvum) infection on mouse sperm motility, structure, and fertilizing ability and on embryo development. Design In vitro model of the effects of U. parvum serovar 3 infection on mouse sperm. Setting Basic research laboratory. Intervention(s) None. Animals Mice. Main Outcome Measure(s) Mouse sperm motility was examined using the swim-up method, and their motility parameters were analyzed using the sperm motility analysis system. Localization and invasion of U. parvum were observed with fluorescence, confocal, and scanning electron microscopy. After in vitro fertilization with U. parvum–infected sperm, the quality of the fertilized egg and embryo development were assessed. Result(s) U. parvum was attached and internalized into mouse sperms and localized mainly at the sperm head and midpiece. U. parvum–infected mouse sperms exhibited decreased motility in a dose- and duration-dependent manner. Electron micrographs revealed that U. parvum infection induced the aggregation and morphological destruction of mouse sperm. Infected mouse sperm transported U. parvum into the fertilized egg with reduced fertilization rates, and infected embryo development was impaired. Conclusion(s) U. parvum infection caused deterioration of the mouse sperm quality and its functions, which affected the fertilization rate and embryo development.
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- 2021
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6. Blockade of endoplasmic reticulum stress-induced cell death by Ureaplasma parvum vacuolating factor
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Mitsuhide Hamaguchi, Yo Suzuki, Yasuhiro Kawai, Yukiko Nakura, Itaru Yanagihara, Fumiko Nishiumi, Michinobu Yoshimura, Heng Ning Wu, Shigeyuki Kakizawa, and John I. Glass
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Programmed cell death ,biology ,Cell Death ,Endoplasmic reticulum ,Immunology ,Mice, Nude ,biology.organism_classification ,Endoplasmic Reticulum Stress ,Microbiology ,Molecular biology ,Ureaplasma ,HeLa ,Mice ,MicroRNAs ,Ureaplasma parvum ,Apoptosis ,Cell culture ,Virology ,Unfolded protein response ,Animals ,Humans ,Intracellular ,HeLa Cells - Abstract
Previously, we found that Ureaplasma parvum internalised into HeLa cells and cytosolic accumulation of galectin-3. U. parvum induced the host cellular membrane damage and survived there. Here, we conducted vesicular trafficking inhibitory screening in yeast to identify U. parvum vacuolating factor (UpVF). U. parvum triggered endoplasmic reticulum (ER) stress and upregulated the unfolded protein response-related factors, including BiP, P-eIF2 and IRE1 in the host cells, but it blocked the induction of the downstream apoptotic factors. MicroRNA library screening of U. parvum-infected cells and UpVF-transfected cells identified miR-211 and miR-214 as the negative regulators of the apoptotic cascade under ER stress. Transient expression of UpVF induced HeLa cell death with intracellular vacuolization; however, some stable UpVF transformant survived. U. parvum-infected cervical cell lines showed resistance to actinomycin D, and UpVF stable transformant cell lines exhibited resistance to X-ray irradiation, as well as cisplatin and paclitaxel. UpVF expressing cervical cancer xenografts in nude mice also acquired resistance to cisplatin and paclitaxel. A mycoplasma expression vector based on Mycoplasma mycoides, Syn-MBA (multiple banded antigen)-UpVF, reduced HeLa cell survival compared with that of Syn-MBA after 72 hr of infection. These findings together suggest novel mechanisms for Ureaplasma infection and the possible implications for cervical cancer malignancy. TAKE AWAYS: • Ureaplasmal novel virulence factor, UpVF, was identified. • UpVF triggered ER stress but suppressed apoptotic cascade via miR-211 and -214. • UpVF conferred resistance to anticancer treatments both in vivo and in vitro. • Dual expression of MBA and UpVF in JCVI-syn3B showed host cell damage.
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- 2021
7. A case series of the dynamics of lipid mediators in patients with sepsis
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Takami Nakao, Takuya Ishibe, Tomohide Matsushima, Mitsuhide Hamaguchi, Noriko Tsuda, Heng Ning Wu, Masahiro Tanaka, Ourlad Alzeus G. Tantengco, Ikuhiro Sakata, and Itaru Yanagihara
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0301 basic medicine ,linoleic acid ,medicine.medical_specialty ,Linoleic acid ,Case Report ,Case Reports ,Sepsis ,sepsis ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Fatty acid amide hydrolase ,Internal medicine ,medicine ,fatty acid amide hydrolase ,lipid mediator ,Prostaglandin E1 ,business.industry ,RC86-88.9 ,General Engineering ,Medical emergencies. Critical care. Intensive care. First aid ,Anandamide ,medicine.disease ,Eicosapentaenoic acid ,030104 developmental biology ,Endocrinology ,chemistry ,Docosahexaenoic acid ,030220 oncology & carcinogenesis ,Arachidonic acid ,SOFA score ,business - Abstract
Background Bioactive lipid mediators play a crucial role during infection. Previously, we showed the expression level of FAAH mRNA in septic patients was lower than in healthy controls. Case Presentation Four patients with a Sequential Organ Failure Assessment (SOFA) score of
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- 2019
8. Complete Genome Sequence of Ureaplasma parvum Serovar 3 Strain SV3F4, Isolated in Japan
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Shota Nakamura, Tomio Fujita, Saki Ishino, Itaru Yanagihara, Tatsuya Tanaka, Heng Ning Wu, Yasuhiro Kawai, Makoto Takeuchi, Masahiro Nakayama, Daisuke Motooka, Yukiko Nakura, and Fumiko Nishiumi
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Serotype ,Whole genome sequencing ,Ureaplasma parvum ,Strain (biology) ,parasitic diseases ,Genetics ,Prokaryotes ,Biology ,Molecular Biology ,Microbiology - Abstract
Here, we present the complete genome sequence of Ureaplasma parvum serovar 3, clinical strain SV3F4, isolated from a Japanese patient with a history of an infectious abortion.
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- 2014
9. 'Mycoplasmal antigen modulation,' a novel surface variation suggested for a lipoprotein specifically localized on Mycoplasma mobile
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Chie Kawaguchi, Daisuke Nakane, Heng Ning Wu, and Makoto Miyata
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Phase variation ,Cell growth ,Lipoproteins ,Cell ,General Medicine ,Biology ,Applied Microbiology and Biotechnology ,Microbiology ,Molecular biology ,Antigenic Variation ,medicine.anatomical_structure ,Antigenic Modulation ,Mycoplasma ,Antigen ,Bacterial Proteins ,Antigens, Surface ,medicine ,Antigenic variation ,biology.protein ,Antibody ,Pathogen ,Fish gill - Abstract
Mycoplasma mobile, a pathogen of freshwater fish, glides easily across surfaces, colonizes on the fish gill, and causes necrosis. The cell surface is differentiated into three parts: the head, neck, and body. Mobile variable surface proteins (Mvsps) localizing at each of these parts may be involved in surface variation including phase variation and antigenic variation, although no proof exists. In this study, we examined this possibility by focusing on MvspI, the largest Mvsp. Immunofluorescence microscopy showed that MvspI is expressed on the surfaces of all cells. When anti-MvspI antibody was added at concentrations over 0.8 nM, MvspI was observed to decrease over time. After 72 h of cultivation with the antibody, the fluorescence intensity and amount of MvspI decreased up to 13 and 39%, respectively, compared to those of cells grown without antibody. These changes were reversed by the removal of the antibody. Such effects were not observed when another antibody targeting other Mvsps was used, suggesting that the decrease is specific to the relationship between MvspI and the antibody. Cell growth was also inhibited by the antibody, but the decrease in MvspI could not be explained by the selective growth of MvspI-negative variants or by the inhibition of growth with other conditions. The decrease in MvspI caused by the antibody binding may suggest a novel type of surface variation, designated here as “mycoplasmal antigen modulation.”
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- 2011
10. Whole Surface Image of Mycoplasma mobile, Suggested by Protein Identification and Immunofluorescence Microscopy.
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Heng Ning Wu and Miyata, Makoto
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CAPROATES , *IMMUNOFLUORESCENCE , *GEL electrophoresis , *PROTEINS , *PEPTIDES - Abstract
Mycoplasma mobile, a freshwater fish pathogen featured with robust gliding motility, binds to the surface of the gill, where it then colonizes. Here, to obtain a whole image of its cell surface, we identified the proteins exposed on the surface using the following methods. (i) The cell surface was labeled with sulfosuccinimidyl-6-(biotinamido) hexanoate and recovered by an avidin column. (ii) The cells were subjected to phase partitioning using Triton X-114, and the hydrophobic proteins were recovered. (iii) The membrane fraction was analyzed by two-dimensional gel electrophoresis. These recovered proteins were subjected to peptide mass fingerprinting, and a final list of 36 expressed surface proteins was established. The ratio of identified proteins to whole surface proteins was estimated through two-dimensional gel electrophoresis of the membrane fraction. The localization of three newly found proteins, Mvsps C, E, and F, has been clarified by immunofluorescence microscopy. Integrating all information, a whole image of the cell surface showed that the proteins for gliding that were localized at the base of the protrusion of flask-shaped M. mobile account for more than 12% of all surface proteins and that Mvsps, surface variants that were localized at both parts other than the neck, account for 49% of all surface proteins. [ABSTRACT FROM AUTHOR]
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- 2012
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