121 results on '"Helen Street"'
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2. Using machine learning to model older adult inpatient trajectories from electronic health records data
- Author
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Maria Herrero-Zazo, Tomas Fitzgerald, Vince Taylor, Helen Street, Afzal N. Chaudhry, John R. Bradley, Ewan Birney, and Victoria L. Keevil
- Subjects
Health technology ,Diagnostic technique in health technology ,Applied computing in medical science ,Machine learning ,Science - Abstract
Summary: Electronic Health Records (EHR) data can provide novel insights into inpatient trajectories. Blood tests and vital signs from de-identified patients’ hospital admission episodes (AE) were represented as multivariate time-series (MVTS) to train unsupervised Hidden Markov Models (HMM) and represent each AE day as one of 17 states. All HMM states were clinically interpreted based on their patterns of MVTS variables and relationships with clinical information. Visualization differentiated patients progressing toward stable ‘discharge-like’ states versus those remaining at risk of inpatient mortality (IM). Chi-square tests confirmed these relationships (two states associated with IM; 12 states with ≥1 diagnosis). Logistic Regression and Random Forest (RF) models trained with MVTS data rather than states had higher prediction performances of IM, but results were comparable (best RF model AUC-ROC: MVTS data = 0.85; HMM states = 0.79). ML models extracted clinically interpretable signals from hospital data. The potential of ML to develop decision-support tools for EHR systems warrants investigation.
- Published
- 2023
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3. Using Machine Learning to Model Older Adult Inpatient Trajectories From Electronic Health Records Data
- Author
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Maria Herrero-Zazo, Tomas Fitzgerald, Vince Taylor, Helen Street, Afzal N. Chaudhry, John R. Bradley, Ewan Birney, Victoria L. Keevil, Herrero-Zazo, Maria [0000-0001-7793-3296], Apollo - University of Cambridge Repository, Herrero-Zazo, M [0000-0001-7793-3296], and Keevil, VL [0000-0001-6148-0640]
- Subjects
Diagnostic technique in health technology ,History ,Multidisciplinary ,Polymers and Plastics ,Machine learning ,Applied computing in medical science ,Health technology ,Business and International Management ,Industrial and Manufacturing Engineering - Abstract
Electronic Health Records (EHR) data can provide novel insights into inpatient trajectories. Blood tests and vital signs from de-identified patients' hospital admission episodes (AE) were represented as multivariate time-series (MVTS) to train unsupervised Hidden Markov Models (HMM) and represent each AE day as one of 17 states. All HMM states were clinically interpreted based on their patterns of MVTS variables and relationships with clinical information. Visualization differentiated patients progressing toward stable 'discharge-like' states versus those remaining at risk of inpatient mortality (IM). Chi-square tests confirmed these relationships (two states associated with IM; 12 states with ≥1 diagnosis). Logistic Regression and Random Forest (RF) models trained with MVTS data rather than states had higher prediction performances of IM, but results were comparable (best RF model AUC-ROC: MVTS data = 0.85; HMM states = 0.79). ML models extracted clinically interpretable signals from hospital data. The potential of ML to develop decision-support tools for EHR systems warrants investigation., This research was supported by the NIHR Cambridge Biomedical Research Centre (BRC-1215-20014). VLK was funded by a MRC/NIHR Clinical Academic Research Partnership Grant (CARP; grant code: MR/T023902/1). VT is supported by Cancer Research UK. EB and TF were funded by the EMBL European Bioinformatics Institute (EMBL-EBI).
- Published
- 2022
4. Adherence/Retention Alzheimer's Prevention Initiative Colombia Plan
- Author
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Natalia Acosta-Baena, Silvia Rios-Romenets, Liliana Lopez, Helen Street, Pierre N. Tariot, Laura Jakimovich, William Cho, Lucia Madrigal-Zapata, Francisco Lopera, Eric M. Reiman, and Jessica B. Langbaum
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Population ,Short Report ,Disease ,Preclinical Alzheimer's disease ,Adherence/Retention Plan ,Compliance (psychology) ,03 medical and health sciences ,0302 clinical medicine ,Alzheimer Disease ,Informed consent ,Enfermedad de Alzheimer ,Crenezumab ,Medicine ,Duration (project management) ,education ,Reimbursement ,education.field_of_study ,business.industry ,Cumplimiento y Adherencia al Tratamiento ,3. Good health ,Treatment Adherence and Compliance ,Psychiatry and Mental health ,Schedule (workplace) ,030104 developmental biology ,Autosomal Dominant Alzheimer's Disease ,Family medicine ,Alzheimer's Prevention Initiative ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
Introduction The Alzheimer's Prevention Initiative Colombia Trial is a collaborative project involving the Neurosciences Group of Antioquia, Genentech/Roche, and the Banner Alzheimer's Institute, studying whether crenezumab can delay or prevent the clinical onset of Alzheimer's disease in cognitively unimpaired individuals who carry the PSEN1 E280A mutation. In an effort to optimize participant compliance and adherence and maintain interest in the trial for its duration, the Neurosciences Group of Antioquia developed an “Adherence/Retention Plan.” This plan identifies potential barriers to trial adherence related to characteristics of the participants and study partners, protocol design, sponsors, investigators, environmental factors, and characteristics of this population in general and identifies potential solutions to these barriers. Methods Neurosciences Group of Antioquia designed and implemented a number of strategies including a) a prescreening process that emphasized detailed and staged informed consent involving the participant and family and/or friends, b) a schedule of visits and assessments designed to minimize burden while achieving the trial's aims, c) appointment reminders, d) reimbursement for transportation and missed work, e) meals during study visits, f) birthday cards, g) quarterly newsletters, h) annual in-person feedback meetings, i) a supplemental health plan to participants, and j) a social plan to support family members. All the methods used in this plan were approved by local ethics committees. Results By the end of the fourth year of the trial, participant retention was 94.0%, with most participants reporting that they felt “very satisfied” with their participation in the trial. Discussion The Adherence/Retention Plan plays a crucial role in maintaining adherence and compliance needed to achieve the ambitious goals of the Alzheimer's Prevention Initiative-Colombia Autosomal Dominant Alzheimer's Disease Trial and may offer guideposts for other prevention trials.
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- 2018
5. [P1–523]: THE ADHERENCE/RETENTION PLAN OF THE ALZHEIMER's PREVENTION INITIATIVE (API) COLOMBIA TRIAL
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Silvia Rios Romenets, William Cho, Helen Street, Jessica B. Langbaum, Pierre N. Tariot, Liliana Lopez, Lucia Madrigal, Francisco Lopera, Eric M. Reiman, Natalia Acosta-Baena, Laura Jakimovich, Annabel Vaghar, and Rajesh Menon
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Gerontology ,Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Nursing ,Epidemiology ,business.industry ,Health Policy ,Medicine ,Neurology (clinical) ,Plan (drawing) ,Geriatrics and Gerontology ,business - Published
- 2017
6. Measures of Success: Exploring the Importance of Context in the Delivery of Well-Being and Social and Emotional Learning Programmes in Australian Primary and Secondary Schools
- Author
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Helen Street
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business.industry ,Political science ,Well-being ,Pedagogy ,Social emotional learning ,Social environment ,Context (language use) ,Public relations ,Investment (macroeconomics) ,business ,Mental health ,School culture ,Nature versus nurture - Abstract
A significant majority of Australian schools now include school-based well-being and/or social emotional learning (SEL) programmes and initiatives within their school timetable. These programmes are delivered, often with significant investment of money and time, in an attempt to successfully nurture social, emotional and academic competency and promote positive mental health within the staff and student community. This chapter explores the impact of the school context on the effectiveness of these programmes. The key aspects of school context considered here are the school social environment, the overall school culture and the school climate. These features of school context encompass important aspects of schooling that have an impact on how SEL and well-being programmes are implemented. The chapter proposes that Australian schools need to more carefully consider how the messages being delivered by any well-being and SEL programme can be assimilated into the wider school context. They also need to give greater consideration as to how that wider context can successfully accommodate the aims of each and every well-being and SEL programme. Overall, the findings of the chapter strongly suggest that Australian schools need to implement SEL and well-being programmes with a far wider consideration of context than is currently evident.
- Published
- 2017
7. Motivation Outside In, Inside Out
- Author
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Helen Street
- Subjects
Kindness ,Positive education ,business.industry ,Flourishing ,Learning environment ,media_common.quotation_subject ,Self-esteem ,Public relations ,Emotional competence ,Well-being ,Gratitude ,Psychology ,business ,media_common - Abstract
It is time we paid less attention to the ingredients of Well-being and more attention to the process of being well. Rising interest in school based mental health initiatives, positive education and whole school well-being has resulted in a great deal of attention being paid to the perceived ‘ingredients’ of youth well-being and successful education. These key ingredients include key facets of social and emotional competency such as resiliency, kindness, character strengths, gratitude and mindfulness. Each ‘ingredient’ has been researched both in terms of its contribution to overall well-being, flourishing and learning outcomes, and as a desired aim of well-being program delivery. Overall, it seems that despite research findings clearly supporting the value of these component parts in contributing to well-being, evidence supporting the effectiveness of intervention programs is far less convincing. In fact, some academics have suggested that the majority of school based well-being programs are ineffective, or even counter-productive. For example, Professor Kathryn Ecclestone, from the University of Sheffield in the UK, has suggested that well-being is not something to be broken down and taught in component parts, but rather something that flows naturally as a byproduct of creating a rich and diverse learning environment (Ecclestone, K. Well-being programmes in schools might be doing children more harm than good. The Conversation, January 23 2015).
- Published
- 2017
8. Is There a Relationship between Impulsivity and Depression in Adults? A Research Synthesis
- Author
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Gary K. Hulse, Helen Street, and Hanh Tt Ngo
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Psychiatry and Mental health ,Action (philosophy) ,Operational definition ,medicine ,Context (language use) ,medicine.symptom ,Impulsivity ,Association (psychology) ,Psychology ,Rapid response ,Depression (differential diagnoses) ,Preference ,Developmental psychology - Abstract
Despite the abundant research on impulsivity and that on depression, and despite several lines of clinical and research evidence pointing out the potential associations between the two phenomena, to date the idea that impulsivity is linked to depression is still seriously questioned. This paper will argue that there is a body of research investigating the relationship between impulsivity and depression. It will argue that this body of research is under-recognized, largely due to the complex, multi-faceted nature of impulsivity, and its varied and inconsistent definitions and measurements used in different studies, resulting in mixed findings. To support these arguments, the paper will first critically review a selected but representative sample of definitions and models of impulsivity across different research disciplines. In so doing, it will highlight the need for an integrated framework for impulsivity, and identify one which suggests three key types of impulsivity: rapid response, preference for immediate reinforcement, and underestimation of risk. Next, results of a systematic search for the extant literature on the relationship between impulsivity and depression will be presented, organized accordingly to the identified integrated framework. A possible theoretical integration of impulsivity research in the context of depression will also be offered, suggesting an operational definition of impulsivity as an action or a behavioural pattern that goes against ones desired goal. The paper will conclude by offering recommendations for future research into the association between depression and the different types of impulsivity, guided by the integrated framework. Important clinical implications will also be discussed.
- Published
- 2011
9. The role of perfectionism, dichotomous thinking, shape and weight overvaluation, and conditional goal setting in eating disorders
- Author
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Paula R. Nathan, Jessica Lethbridge, Sarah J. Egan, Hunna J. Watson, and Helen Street
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Adult ,Adolescent ,media_common.quotation_subject ,Self-concept ,medicine.disease_cause ,Feeding and Eating Disorders ,Intervention (counseling) ,Body Image ,medicine ,Humans ,Personality ,Goal setting ,media_common ,Body Weight ,Cognition ,Perfectionism (psychology) ,Middle Aged ,Body Dysmorphic Disorders ,medicine.disease ,Self Concept ,Psychiatry and Mental health ,Clinical Psychology ,Eating disorders ,Female ,Psychology ,Goals ,Clinical psychology ,Psychopathology - Abstract
This study examined the role of perfectionism (self-oriented and socially prescribed), shape and weight overvaluation, dichotomous thinking, and conditional goal setting in eating disorder psychopathology. Perfectionism and shape and weight overvaluation have had longstanding implication in the development and maintenance of eating disorders. A leading evidence-based theory of eating disorders (Fairburn, Cooper & Shafran, 2003) outlines perfectionism as a maintaining mechanism of eating disorder psychopathology and as a proximal risk factor for the development of shape and weight overvaluation. These constructs have been linked to other cognitive processes relevant to eating disorders, specifically, dichotomous thinking and conditional goal setting. Women with DSM-IV eating disorders (N=238) were compared to women in the general community (N=248) and, as hypothesised, scores on measures of these constructs were pronounced in the clinical sample. Hierarchical regression analyses predicting eating disorder psychopathology showed that for both groups, dichotomous thinking and conditional goal setting significantly improved model fit beyond perfectionism and shape and weight overvaluation alone. Self-oriented perfectionism, but not socially prescribed perfectionism, was relevant to eating disorder psychopathology. We discuss the implications for current treatment protocols and early intervention.
- Published
- 2011
10. The Why, Not the What: The Positive Power of Intrinsic Motivations in Client Goal Setting and Pursuit
- Author
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Helen Street
- Subjects
media_common.quotation_subject ,Positive power ,Procrastination ,Frustration ,Psychology ,Social psychology ,Goal setting ,media_common - Published
- 2009
11. Better Than Ok : Helping Young People to Flourish at School and Beyond
- Author
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Dr. Helen Street, Neil Porter, Dr. Helen Street, and Neil Porter
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- Youth development, Self-actualization (Psychology), Youth--Life skills guides, Youth--Conduct of life, Study skills
- Abstract
This is a book of up-to-date strategies for helping children—from their earliest years into adulthood—and is all about helping kids do more than just survive; these are strategies to help kids flourish. These solution-focused and easy-to-read essays are by 27 of the world's top experts in positive education. Learn to help children develop a lifelong love of learning with this practical and positive guide. Contributors include Michael Carr-Gregg, Maggie Dent, Andrew Fuller, and Tim Sharp.
- Published
- 2014
12. Integrated review of the social and psychological gender differences in depression
- Author
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Sandra G. Boughton and Helen Street
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Arts and Humanities (miscellaneous) ,Perspective (graphical) ,Psychology ,General Psychology ,Depression (differential diagnoses) ,Clinical psychology - Abstract
A range of theories has been proposed to explain the well-documented finding that women are twice as likely as men to be diagnosed with depression. Theories offering psychological and sociological explanations are reviewed in this paper. The possibility that this finding is an artefact of differences in the ways in which men and women demonstrate depression is examined. A discussion of the implications of establishing a broader systemic perspective of depression for understanding the gender difference in depression is presented.
- Published
- 2007
13. The psychosocial impact of cancer: Exploring relationships between conditional goal setting and depression
- Author
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Helen Street
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Adult ,Male ,media_common.quotation_subject ,MEDLINE ,Experimental and Cognitive Psychology ,Social support ,Neoplasms ,medicine ,Humans ,Set (psychology) ,Goal setting ,Depression (differential diagnoses) ,Aged ,media_common ,Aged, 80 and over ,Motivation ,Depression ,Social Support ,Middle Aged ,Psychotherapy ,Psychiatry and Mental health ,Oncology ,Rumination ,Happiness ,Female ,medicine.symptom ,Psychology ,Attitude to Health ,Goals ,Psychosocial ,Clinical psychology - Abstract
This study explores depression in cancer patients with reference to conditional goal setting (CGS) theory. CGS theory proposes that depressed individuals believe that personal happiness is conditional upon attainment of specific goals (personal CGS). Other individuals may set important goals believing that goal achievement is a necessary prerequisite of social acceptance and approval (social CGS). CGS has been found to contribute to depression in normal populations. 15.2% of the 67 newly diagnosed cancer patients in this study showed clinical levels of depression. A significant relationship was identified between personal CGS, rumination and depression, as predicted in CGS theory. Two months later, 46.7% of patients demonstrated clinical levels of depression. This later experience of depression was significantly related to social CGS. The results suggest CGS involving a misdirected pursuit of happiness is initially associated with depression whereas subsequent experiences of depression are related to a misdirected pursuit of social acceptance. Implications are discussed in terms of understanding the cancer patients' motivations controlling goal setting. It is suggested that successful psychotherapy for depression in cancer patients needs to examine the motivations controlling goal setting in addition to the process of goal pursuit.
- Published
- 2003
14. Exploring relationships between goal setting, goal pursuit and depression: a review
- Author
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Helen Street
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Framing (social sciences) ,Arts and Humanities (miscellaneous) ,Goal orientation ,Applied psychology ,Goal achievement ,Goal pursuit ,Goal theory ,Psychology ,Social psychology ,Goal setting ,General Psychology - Abstract
The following paper offers a new theory of conditional goal setting within a comprehensive overview of the literature on goals and depression. The past decade has seen a growing interest in the relationships between goals and depression. Several researchers have suggested that the content and framing of important goals are indicative of vulnerability to depression. For example, individuals valuing relationship goals above achievement oriented goals have been found to have a greater sense of wellbeing than individuals placing achievement goals above relationship goals. Other researchers have focused on the processes of goal pursuit. They have identified relationships between actual/ideal discrepancies, perceived progress to goal achievement and levels of depression. Reactions to goal loss and goal failure have also been an important topic of goals and depression research with a focus on the vulnerable individual's inability disengage from important failed goals. Although many of the goal theories examine w...
- Published
- 2002
15. Exploring the role of conditional goal setting in depression
- Author
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Helen Street
- Subjects
Clinical Psychology ,Framing (social sciences) ,Goal orientation ,media_common.quotation_subject ,Rumination ,medicine ,Happiness ,medicine.symptom ,Psychology ,Goal setting ,Social psychology ,media_common ,Developmental psychology - Abstract
The past decade has given rise to an increasing interest in relationships between goal setting and depression. Significant relationships have been identified between goal type, goal framing, goal difficulty and goal organisation, and depressive experiences. The present paper explores individuals' motivations controlling goal setting and their relationship to rumination and depression. Findings indicate that whilst some individuals make their personal well-being conditional upon general life achievements, others make the achievement of only one or two specific goals a prerequisite for personal happiness. This specific process has been named Conditional Goal Setting (CGS). Findings suggest that CGS is significantly related to depression. This relationship appears to be mediated by rumination with CGS of achievement goals but not CGS of relationship goals. Findings are discussed with reference to current goals and depression research.
- Published
- 2001
16. Referrals for anger and aggression in forensic psychology outpatient services
- Author
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Cathryn Richardson, Vincent Egan, Gillian Cooper, Shahla Ahmadi, Helen Street, and Mary McMurran
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medicine.medical_specialty ,Aggression ,Acting out ,media_common.quotation_subject ,Anger ,medicine.disease ,Hospital Anxiety and Depression Scale ,Pathology and Forensic Medicine ,Psychiatry and Mental health ,Forensic psychology ,Forensic psychiatry ,medicine ,Anxiety ,medicine.symptom ,Psychiatry ,Psychology ,Anxiety disorder ,Clinical psychology ,media_common - Abstract
The purpose of this study was to investigate a clinical observation in referrals to a forensic clinical psychology outpatient service: that anger was related to obsessional-compulsive behaviours, possibly as a substitute means of controlling situations. A secondary hypothesis was that control of situations by obsessional-compulsive behaviours would result in greater levels of anxiety and depression, since this is not this group’s preferred means of control. Comparison of anger referrals (n = 34) and non-anger referrals (n = 25) on the State-Trait Anger Expression inventory (STAXI; Spielberger, 1996), the Maudsley Obsessional-Compulsive inventory (MOCI; Hodgson and Rachman, 1977) and the Hospital Anxiety and Depression scale (HAD; Zigmond and Snaith, 1983) showed no support for either of these hypotheses. Additional data on the STAXI and HAD were added to the initial sample, thus providing norms on these measures for forensic outpatients. Anger referrals scored significantly higher on all but two scales of...
- Published
- 2000
17. Conceptualizing depression: an integration of 27 theories
- Author
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Sheina Orbell, Helen Street, and Paschal Sheeran
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Clinical Psychology ,Social support ,Relation (database) ,Card sorting ,Social environment ,Cognition ,Multidimensional scaling ,Dimension (data warehouse) ,Psychology ,Social psychology ,Primary research ,Cognitive psychology - Abstract
A multidimensional scaling study is presented which aims to integrate 20 depression researchers' understanding of psychological theories of depression. Ninety-nine concepts were derived from 27 psychological accounts of the aetiology of depression and formed the basis of a card sort task. The analysis uses three-way multidimensional scaling techniques and additional proximity analysis to create a meaningful two-dimensional framework. This framework organizes concepts of depression into four distinct conceptual areas occurring at the dimension poles. One area is concerned with the cognitive processing bias towards negative information, the opposing area describes self-reinforcement in relation to the social environment. A third area emphasizes the individual's lack of positive social support and is opposed by a fourth area that focuses on the pursuit of and prolonged commitment to unrealistic goals. Each area contains factors from a wide range of theories and thus provides a unique representation of concepts of depression. The solution provides a useful model of multiple understandings of depression theories. The four areas in the solution emphasize the need for consideration of individual concepts within an integrated framework. In addition, each area identifies an important focus for future primary research. Copyright © 1999 John Wiley & Sons, Ltd.
- Published
- 1999
18. Depression and the pursuit of happiness
- Author
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Helen Street
- Subjects
media_common.quotation_subject ,Vulnerability ,Lower order ,Goal pursuit ,Developmental psychology ,Clinical Psychology ,Depression (economics) ,Perception ,Rumination ,Well-being ,medicine ,Happiness ,medicine.symptom ,Psychology ,Social psychology ,media_common - Abstract
It is suggested that vulnerability to depression may be exacerbated by misconceptions of happiness as a higher order goal only obtainable through attainment of lower order goals. Thus, depressed individuals may effectively have put their happiness “on hold“ throughout the process of goal pursuit. The perception of prolonged unhappiness during the process of goal pursuit may lead to rumination and depression. In support of this theory, longitudinal evidence has been obtained from the present study suggesting that individuals who pursue important academic, social and fitness goals in order to gain happiness are more likely to become depressed than those that pursue the same goals for personal enjoyment. The study explores the concept of “linking” (McIntosh, 1996) in relation to rumination and depression. An individual who “links” makes their happiness and well being conditional upon achievement of specific goals. Regression analyses are carried out on data obtained from 90 adolescents over six mont...
- Published
- 1999
19. Is it Possible to Establish the Truth of a Child's Statement Alleging Sexual Abuse?
- Author
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Helen Street
- Subjects
Child abuse ,medicine.medical_specialty ,Health (social science) ,Sociology and Political Science ,Social Psychology ,Statement (logic) ,Criminology ,Sexual abuse ,Credibility ,medicine ,Criminal law ,Domestic violence ,Psychiatry ,Psychology ,Psychological abuse ,Law - Published
- 1996
20. Goals and Goalsetting: Prevention and Treatment of Depression
- Author
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Helen Street
- Published
- 2012
21. Mediators between perfectionism and eating disorder psychopathology: Shape and weight overvaluation and conditional goal-setting
- Author
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Bronwyn C. Raykos, Hunna J. Watson, Helen Street, Anthea Fursland, and Paula R. Nathan
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Adult ,Mediation (statistics) ,Personality Inventory ,media_common.quotation_subject ,medicine.disease_cause ,Feeding and Eating Disorders ,Surveys and Questionnaires ,Interview, Psychological ,Body Image ,medicine ,Humans ,Personality ,Goal setting ,media_common ,Body Weight ,Perfectionism (psychology) ,Explained variation ,medicine.disease ,Diagnostic and Statistical Manual of Mental Disorders ,Psychiatry and Mental health ,Eating disorders ,Female ,Personality Assessment Inventory ,Psychology ,Goals ,Clinical psychology ,Psychopathology - Abstract
Objective: To examine mediators of the relationship between perfectionism and eating disorder (ED) psychopathology in a clinical sample. Method: Participants were 201 women with a DSM-IV diagnosed ED consecutively referred to a specialist outpatient treatment clinic. Participants completed measures of perfectionism, ED psychopathology, shape and weight overvaluation, and conditional goal-setting (CGS). Results: Evaluation of a multivariate mediator model using Baron and Kenny's (1986) four-step mediation methodology showed that shape and weight overvaluation and CGS significantly and uniquely mediated the relation between self-oriented perfectionism (SOP) and restraint, eating concern, shape concern, and weight concern. The mediator model furthered the proportion of explained variance in outcomes beyond the direct effects model by 28–49%. Discussion: The findings support the conclusion that the relationship between SOP and ED psychopathology in women with a clinically diagnosed ED is mediated by shape and weight overvaluation and CGS. © 2010 by Wiley Periodicals, Inc.
- Published
- 2010
22. Reliability and validity of the Conditional Goal Setting in Eating Disorders Scale (CGS-EDS) among adults with eating disorders
- Author
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Anthea Fursland, Hunna J. Watson, Bronwyn C. Raykos, Susan M. Byrne, Paula R. Nathan, and Helen Street
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Predictive validity ,Adult ,Personality Inventory ,Psychometrics ,Test validity ,Developmental psychology ,Feeding and Eating Disorders ,Intervention (counseling) ,Surveys and Questionnaires ,medicine ,Body Image ,Outpatient clinic ,Humans ,Psychiatric Status Rating Scales ,Motivation ,Body Weight ,Construct validity ,Reproducibility of Results ,medicine.disease ,Exploratory factor analysis ,Diagnostic and Statistical Manual of Mental Disorders ,Psychiatry and Mental health ,Clinical Psychology ,Eating disorders ,Convergent validity ,Social Perception ,Female ,Psychology ,Factor Analysis, Statistical ,Attitude to Health ,Goals - Abstract
The aim of this study was to develop and validate a self-report measure of Conditional Goal Setting (CGS) for use among individuals with eating disorders, the Conditional Goal Setting in Eating Disorders Scale (CGS-EDS). The CGS-EDS assesses the degree to which an individual believes that the achievement of happiness is contingent upon the attainment of body shape and weight goals. Women with a DSM-IV diagnosed eating disorder consecutively referred to a specialist outpatient clinic (N=238) completed the CGS-EDS and self-report measures of theoretically related constructs. Exploratory factor analysis indicated a one-factor solution, which accounted for 65% of the variance. The CGS-EDS correlated positively with theoretically related measures of overvaluation of shape and weight, concern with shape and weight, dichotomous thinking, and depression. The alpha reliability of the scale was .92. The CGS-EDS is a valid and reliable measure of CGS in eating disorders and is relevant to cognitive and behavioral models of maintenance and intervention.
- Published
- 2009
23. Depression in older adults: exploring the relationship between goal setting and physical health
- Author
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Helen Street, Moira O'Connor, and Hayley Robinson
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Gerontology ,Male ,medicine.medical_specialty ,Health Status ,Quality of life (healthcare) ,Epidemiology ,Activities of Daily Living ,medicine ,Health Status Indicators ,Humans ,Goal setting ,Depression (differential diagnoses) ,Aged ,Geriatrics ,Aged, 80 and over ,Psychiatric Status Rating Scales ,Depressive Disorder ,Public health ,Physical health ,Psychiatry and Mental health ,Increased risk ,Socioeconomic Factors ,Quality of Life ,Female ,Geriatrics and Gerontology ,Psychology ,Goals ,Clinical psychology - Abstract
Depression in older adults is associated with a decreased quality of life, increased physical and emotional suffering and an increased risk of death and is often associated with declining physical health. Older people with physical illness have higher rates of depression and studies have also noted the particularly high rate of co-morbidity between depressive disorder and general medical conditions. However, other studies have shown those suffering from poor physical health do not necessarily become depressed and, in particular, the goal setting style of the individual impacts on the relationship between poor physical health and depression. This study argues that those who are conditional goal setters and suffer from poorer physical health will be more prone to depression as their perceived ability to achieve their goals is negatively impacted. One hundred and eighty-seven participants were recruited for this study. The participants completed the Centre for Epidemiological Studies Depression Inventory and the physical health subscale of the SF-12 Health Survey. Participants were asked to rank their three most important goals and to give the main reason for setting each of their top three goals. The results showed that poorer physical health is associated with higher depression scores. Correlations revealed significant negative associations between physical health and depression, physical health and progress towards goal and progress towards goal and depression. A partial correlation between physical health and depression scores controlling for progress demonstrated that the relationship between physical health and depression is mediated through perceived progress. Implications for clinical practice are highlighted.
- Published
- 2007
24. Understanding the relationships between wellbeing, goal-setting and depression in children
- Author
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Helen Street, Paula Nathan, Kevin Durkin, Jonathan Morling, Mohamed Azahar Dzahari, Joel Carson, and Evelyn Durkin
- Subjects
Male ,050103 clinical psychology ,Depression ,05 social sciences ,Happiness ,General Medicine ,Self Concept ,030227 psychiatry ,03 medical and health sciences ,Psychiatry and Mental health ,0302 clinical medicine ,Cognition ,Social Perception ,Surveys and Questionnaires ,Humans ,0501 psychology and cognitive sciences ,Female ,Child ,Social Behavior ,Goals - Abstract
Objectives: This study investigates children's conceptions of happiness and wellbeing in relation to goal choice. It examines the prevalence and impact of Conditional goal setting (CGS) on levels of wellbeing and depression. Conditional goal setting describes commitment toward an important goal resulting from a conception that happiness is an end-point achieved through the attainment of this goal. Conditional goal setting has been identified as a significant factor in the development and maintenance of depression in adults. This study examines these same concepts among children. Method: Combined interpretative and quantitative methodology is used. Thirty-six children aged 10–12 years participated in six focus groups discussing their understandings of happiness, important goals and beliefs concerning CGS. Children each attended one of three primary schools in the Perth metropolitan district. They also completed CGS and depression questionnaires. Results: Responses were categorized into a number of common themes. Response content and the number of responses in each theoretical area were identified and discussed. The majority of participants conceptualized happiness as a goal dependant upon something extrinsic to themselves (such as an achievement or event). Statistical analyses suggested a significant relationship between goal setting styles, conceptualizations of happiness and depression. Depressed children were more likely than non-depressed children to be conditional goal setters. Conclusions: Findings suggest that some children conceptualize happiness as an outcome that is dependent on their important achievements and acquisitions. This conceptualization is related to depression. Alternatively, non-depressed children tended to conceptualize happiness as a process independent of goal achievement or failure.
- Published
- 2004
25. Exploring the relationship between different psychosocial determinants of depression: a multidimensional scaling analysis
- Author
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Sheina Orbell, Paschal Sheeran, and Helen Street
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Self-efficacy ,Coping (psychology) ,Conceptualization ,Depression ,Mental Disorders ,Interpersonal communication ,Self Concept ,Developmental psychology ,Life Change Events ,Psychiatry and Mental health ,Clinical Psychology ,Interpersonal relationship ,Humans ,Interpersonal Relations ,Multidimensional scaling ,Psychology ,Cognition Disorders ,Psychological Theory ,Social Behavior ,Psychosocial ,Internal-External Control ,Intrapersonal communication - Abstract
Background: The psychological literature concerned with the aetiology and maintenance of depression has generally been considered too diverse to allow for integration of concepts into a single comprehensive review. Moreover, there is little understanding of the original theorists' conceptualisation of the key themes underlying psychosocial theories of depression. This study aims to create a single framework of psychosocial depression concepts based on the opinions of key original theorists. Method: A quantitative integration of depression factors was conducted. Ninety-nine factors were identified from 27 theories. Fourteen of the original theorists sorted the factors into groups using a card sort task. Results: Three-way multidimensional scaling (MDS) produced a four-dimensional solution with high explained variance and low stress. Dimension one describes cognitions resulting in a lack of positive intrapersonal and interpersonal communication. Dimension two emphasises behaviours and the impact of environmental stressors. Dimension three describes the individual's pursuit of unrealistic goals and a perceived lack of control. Finally, Dimension four describes concepts relating to self-focus and self-reinforcement. Limitations: future research could examine clinicians and depressed individuals' understandings of the literature. Conclusions: the MDS solution identifies the original theorists' collective understanding of the literature. Clinicians could usefully employ the framework to identify the underlying psychosocial themes involved in depression. Moreover the study highlights the need for clinicians to consider the relationships between different conceptual areas in order to challenge the chronic nature of the depressive experience and the high rates of relapse. © 2001 Elsevier Science B.V. All rights reserved.
- Published
- 2001
26. Administration of a bacterial lysate to the airway compartment is sufficient to inhibit allergen-induced lung eosinophilia in germ-free mice.
- Author
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Michael AN, Pivniouk O, Ezeh PC, Banskar S, Hahn S, DeVries A, O'Connell K, Pivniouk V, and Vercelli D
- Subjects
- Animals, Mice, Asthma immunology, Pulmonary Eosinophilia immunology, Pulmonary Eosinophilia etiology, Pulmonary Eosinophilia pathology, Ovalbumin immunology, Female, Bronchoalveolar Lavage Fluid immunology, Lung pathology, Lung immunology, Lung microbiology, Mice, Inbred BALB C, Cell Extracts pharmacology, Disease Models, Animal, Bacterial Lysates, Allergens immunology, Germ-Free Life
- Abstract
The nexus between eosinophils and microbes is attracting increasing attention. We previously showed that airway administration of sterile microbial products contained in dust collected from traditional dairy farms virtually abrogated bronchoalveolar lavage (BAL) eosinophilia and other cardinal asthma phenotypes in allergen-sensitized specific pathogen-free (SPF) mice. Interestingly, comparable inhibition of allergen-induced BAL eosinophilia and promotion of airway barrier integrity were found upon administration of a sterile, pharmacological-grade bacterial lysate, OM-85, to the airway compartment of allergen-sensitized SPF mice. Here, we asked whether intrinsic properties of airway-delivered microbial products were sufficient to inhibit allergic lung inflammation or whether these effects were mediated by reprogramming of the host microbiota. We compared germ-free (GF) mice and offspring of GF mice associated with healthy mouse gut microbiota and maintained under SPF conditions for multiple generations (Ex-GF mice). These mice were treated intranasally with OM-85 and evaluated in the ovalbumin and Alternaria models of allergic asthma focusing primarily on BAL eosinophilia. Levels of allergen-induced BAL eosinophilia were comparable in GF and conventionalized Ex-GF mice. Airway administration of the OM-85 bacterial lysate was sufficient to inhibit allergen-induced lung eosinophilia in both Ex-GF and GF mice, suggesting that host microbiota are not required for the protective effects of bacterial products in these models and local airway exposure to microbial products is an effective source of protection. OM-85-dependent inhibition of BAL eosinophilia in GF mice was accompanied by suppression of lung type 2 cytokines and eosinophil-attracting chemokines, suggesting that OM-85 may work at least by decreasing eosinophil lung recruitment., Competing Interests: Conflict of interest statement. D.V. and V.P. are inventors in PCT/EP2019/074562 (“Method of Treating and/or Preventing Asthma, Asthma Exacerbations, Allergic Asthma and/or Associated Conditions with Microbiota Related to Respiratory Disorders”). The rest of the authors have no relevant conflicts of interest., (© The Author(s) 2024. Published by Oxford University Press on behalf of Society for Leukocyte Biology.)
- Published
- 2024
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27. Machine learning models reveal distinct disease subgroups and improve diagnostic and prognostic accuracy for individuals with pathogenic SCN8A gain-of-function variants.
- Author
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Hack JB, Watkins JC, and Hammer MF
- Subjects
- Humans, Prognosis, Phenotype, Gain of Function Mutation, Algorithms, Male, Female, Adult, Genetic Predisposition to Disease, Machine Learning, NAV1.6 Voltage-Gated Sodium Channel genetics
- Abstract
Distinguishing clinical subgroups for patients suffering with diseases characterized by a wide phenotypic spectrum is essential for developing precision therapies. Patients with gain-of-function (GOF) variants in the SCN8A gene exhibit substantial clinical heterogeneity, viewed historically as a linear spectrum ranging from mild to severe. To test for hidden clinical subgroups, we applied two machine-learning algorithms to analyze a dataset of patient features collected by the International SCN8A Patient Registry. We used two research methodologies: a supervised approach that incorporated feature severity cutoffs based on clinical conventions, and an unsupervised approach employing an entirely data-driven strategy. Both approaches found statistical support for three distinct subgroups and were validated by correlation analyses using external variables. However, distinguishing features of the three subgroups within each approach were not concordant, suggesting a more complex phenotypic landscape. The unsupervised approach yielded strong support for a model involving three partially ordered subgroups rather than a linear spectrum. Application of these machine-learning approaches may lead to improved prognosis and clinical management of individuals with SCN8A GOF variants and provide insights into the underlying mechanisms of the disease., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2024. Published by The Company of Biologists Ltd.)
- Published
- 2024
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28. Developing generic templates to shape the future for conducting integrated research platform trials.
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Gidh-Jain M, Parke T, König F, Spiertz C, and Mesenbrink P
- Subjects
- Research Design, Clinical Trials as Topic standards
- Abstract
Background: Interventional clinical studies conducted in the regulated drug research environment are designed using International Council for Harmonisation (ICH) regulatory guidance documents: ICH E6 (R2) Good Clinical Practice-scientific guideline, first published in 2002 and last updated in 2016. This document provides an international ethical and scientific quality standard for designing and conducting trials that involve the participation of human subjects. Recently, there has been heightened awareness of the importance of integrated research platform trials (IRPs) designed to evaluate multiple therapies simultaneously. The use of a single master protocol as a key source document to fulfill trial conduct obligations has resulted in a re-examination of the templates used to fulfill the dynamic regulatory and modern drug development environment challenges., Methods: Regulatory medical writing, biostatistical, and other members of EU Patient-cEntric clinicAl tRial pLatforms (EU-PEARL) developed the suite of templates for IRPs over a 3.5-year period. Stakeholders contributing expertise included academic hospitals, pharmaceutical companies, non-governmental organizations, patient representative groups, and small and medium-sized enterprises (SMEs)., Results: The suite of templates for IRPs based on TransCelerate's Common Protocol Template (CPT) and statistical analysis plan (SAP) should help authors navigate relevant guidelines as they create study design content relevant for today's IRP studies. It offers practical suggestions for adaptive platform designs which offer flexible features such as dropping treatments for futility or adding new treatments to be tested during a trial. The EU-PEARL suite of templates for IRPs comprises a preface, followed by the actual resource. The preface clarifies the intended use and underlying principles that inform resource utility. The preface lists references contributing to the development of the resource. The resource includes TransCelerate CPT guidance text, and EU-PEARL-derived guidance text, distinguished from one another using shading. Rationale comments are used throughout for clarification purposes. In addition, a user-friendly, functional, and informative Platform Trials Best Practices tool to support the setup, design, planning, implementation, and conduct of complex and innovative trials to support multi-sourced/multi-company platform trials is also provided. Together, the EU-PEARL suite of templates and the Platform Trials Best Practices tool constitute the reference user manual., Conclusions: This publication is intended to enhance the use, understanding, and dissemination of the EU-PEARL suite of templates for designing IRPs. The reference user manual and the associated website ( http://www.eu-pearl ) should facilitate the designing of IRP trials., (© 2024. The Author(s).)
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- 2024
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29. LPS binding protein and activation signatures are upregulated during asthma exacerbations in children.
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Jones AC, Leffler J, Laing IA, Bizzintino J, Khoo SK, LeSouef PN, Sly PD, Holt PG, Strickland DH, and Bosco A
- Subjects
- Humans, Child, Lipopolysaccharides, Leukocytes, Mononuclear, Cell Movement, Convalescence, Asthma diagnosis, Asthma genetics, Hypersensitivity, Immediate
- Abstract
Asthma exacerbations in children are associated with respiratory viral infection and atopy, resulting in systemic immune activation and infiltration of immune cells into the airways. The gene networks driving the immune activation and subsequent migration of immune cells into the airways remains incompletely understood. Cellular and molecular profiling of PBMC was employed on paired samples obtained from atopic asthmatic children (n = 19) during acute virus-associated exacerbations and later during convalescence. Systems level analyses were employed to identify coexpression networks and infer the drivers of these networks, and validation was subsequently obtained via independent samples from asthmatic children. During exacerbations, PBMC exhibited significant changes in immune cell abundance and upregulation of complex interlinked networks of coexpressed genes. These were associated with priming of innate immunity, inflammatory and remodelling functions. We identified activation signatures downstream of bacterial LPS, glucocorticoids and TGFB1. We also confirmed that LPS binding protein was upregulated at the protein-level in plasma. Multiple gene networks known to be involved positively or negatively in asthma pathogenesis, are upregulated in circulating PBMC during acute exacerbations, supporting the hypothesis that systemic pre-programming of potentially pathogenic as well as protective functions of circulating immune cells preceeds migration into the airways. Enhanced sensitivity to LPS is likely to modulate the severity of acute asthma exacerbations through exposure to environmental LPS., (© 2023. The Author(s).)
- Published
- 2023
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30. Information potential of an ubiquitous phytochemical cue.
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Frost CJ
- Subjects
- Phytochemicals pharmacology, Cues, Plant Growth Regulators
- Published
- 2023
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31. Layered supramolecular hydrogels from thioglycosides.
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Wang YC, Kegel LL, Knoff DS, Deodhar BS, Astashkin AV, Kim M, and Pemberton JE
- Subjects
- Phase Transition, Rheology, Temperature, Hydrogels chemistry, Thioglycosides
- Abstract
Low molecular weight hydrogels are made of small molecules that aggregate via noncovalent interactions. Here, comprehensive characterization of the physical and chemical properties of hydrogels made from thioglycolipids of the disaccharides lactose and cellobiose with simple alkyl chains is reported. While thiolactoside hydrogels are robust, thiocellobioside gels are metastable, precipitating over time into fibrous crystals that can be entangled to create pseudo-hydrogels. Rheology confirms the viscoelastic solid nature of these hydrogels with storage moduli ranging from 10-600 kPa. Additionally, thiolactoside hydrogels are thixotropic which is a desirable property for many potential applications. Freeze-fracture electron microscopy of xerogels shows layers of stacked sheets that are entangled into networks. These structures are unique compared to the fibers or ribbons typically reported for hydrogels. Differential scanning calorimetry provides gel-to-liquid phase transition temperatures ranging from 30 to 80 °C. Prodan fluorescence spectroscopy allows assignment of phase transitions in the gels and other lyotropic phases of high concentration samples. Phase diagrams are estimated for all hydrogels at 1-10 wt% from 5 to ≥ 80 °C. These hydrogels represent a series of interesting materials with unique properties that make them attractive for numerous potential applications.
- Published
- 2022
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32. Elucidating Drought-Tolerance Mechanisms in Plant Roots through 1 H NMR Metabolomics in Parallel with MALDI-MS, and NanoSIMS Imaging Techniques.
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Honeker LK, Hildebrand GA, Fudyma JD, Daber LE, Hoyt D, Flowers SE, Gil-Loaiza J, Kübert A, Bamberger I, Anderton CR, Cliff J, Leichty S, AminiTabrizi R, Kreuzwieser J, Shi L, Bai X, Velickovic D, Dippold MA, Ladd SN, Werner C, Meredith LK, and Tfaily MM
- Subjects
- Metabolomics, Plants, Proton Magnetic Resonance Spectroscopy, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Stress, Physiological, Droughts, Plant Roots metabolism
- Abstract
As direct mediators between plants and soil, roots play an important role in metabolic responses to environmental stresses such as drought, yet these responses are vastly uncharacterized on a plant-specific level, especially for co-occurring species. Here, we aim to examine the effects of drought on root metabolic profiles and carbon allocation pathways of three tropical rainforest species by combining cutting-edge metabolomic and imaging technologies in an in situ position-specific
13 C-pyruvate root-labeling experiment. Further, washed (rhizosphere-depleted) and unwashed roots were examined to test the impact of microbial presence on root metabolic pathways. Drought had a species-specific impact on the metabolic profiles and spatial distribution in Piper sp. and Hibiscus rosa sinensis roots, signifying different defense mechanisms; Piper sp. enhanced root structural defense via recalcitrant compounds including lignin, while H. rosa sinensis enhanced biochemical defense via secretion of antioxidants and fatty acids. In contrast, Clitoria fairchildiana , a legume tree, was not influenced as much by drought but rather by rhizosphere presence where carbohydrate storage was enhanced, indicating a close association with symbiotic microbes. This study demonstrates how multiple techniques can be combined to identify how plants cope with drought through different drought-tolerance strategies and the consequences of such changes on below-ground organic matter composition.- Published
- 2022
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33. A visual technique used by citizen scientists shows higher herbivory in understory vs. canopy leaves of a tropical forest.
- Author
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Frost CJ
- Subjects
- Ecosystem, Forests, Humans, Plant Leaves, Herbivory, Trees
- Abstract
Citizen science (CS) initiatives can transform how some ecological data are collected. Herbivory is a fundamental ecological interaction, but herbivory rates in many natural systems are unknown due in part to lack of personnel for monitoring efforts. This limits our ability to understand broad ecological patterns relevant to herbivory. Fortunately, accurate and reliable visual estimation techniques for assessing herbivory could be amenable to CS approaches. In 2008, I developed a CS training initiative (the Million Leaf Project, MLP) to measure herbivory based on a seven-category visual assessment of leaf area removed (LAR). From 2010 to 2018, 394 citizen scientists assessed damage on 175,421 leaves to test the hypothesis that herbivory varies between understory and canopy leaves in a Peruvian tropical forest. In support of this hypothesis, the longitudinal CS data reveal that understory leaves consistently experience more herbivory than do canopy leaves on average (18.3% vs. 12.3%, P < 0.001), a difference that was consistent regardless of CS observer age. Furthermore, data integrity was high, even though younger participants showed some leaf selection bias. The MLP is based on a simple technique, intended to broaden public participation in ecological science, and applicable to any ecological system in which herbivory or leaf damage occurs., (© 2021 by the Ecological Society of America.)
- Published
- 2022
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34. Selective targeting of NaV1.7 via inhibition of the CRMP2-Ubc9 interaction reduces pain in rodents.
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Cai S, Moutal A, Yu J, Chew LA, Isensee J, Chawla R, Gomez K, Luo S, Zhou Y, Chefdeville A, Madura C, Perez-Miller S, Bellampalli SS, Dorame A, Scott DD, François-Moutal L, Shan Z, Woodward T, Gokhale V, Hohmann AG, Vanderah TW, Patek M, Khanna M, Hucho T, and Khanna R
- Subjects
- Analgesics pharmacology, Analgesics therapeutic use, Animals, Rodentia metabolism, Sumoylation, Chronic Pain, NAV1.7 Voltage-Gated Sodium Channel metabolism
- Abstract
The voltage-gated sodium NaV1.7 channel, critical for sensing pain, has been actively targeted by drug developers; however, there are currently no effective and safe therapies targeting NaV1.7. Here, we tested whether a different approach, indirect NaV1.7 regulation, could have antinociceptive effects in preclinical models. We found that preventing addition of small ubiquitin-like modifier (SUMO) on the NaV1.7-interacting cytosolic collapsin response mediator protein 2 (CRMP2) blocked NaV1.7 functions and had antinociceptive effects in rodents. In silico targeting of the SUMOylation site in CRMP2 (Lys374) identified >200 hits, of which compound 194 exhibited selective in vitro and ex vivo NaV1.7 engagement. Orally administered 194 was not only antinociceptive in preclinical models of acute and chronic pain but also demonstrated synergy alongside other analgesics—without eliciting addiction, rewarding properties, or neurotoxicity. Analgesia conferred by 194 was opioid receptor dependent. Our results demonstrate that 194 is a first-in-class protein-protein inhibitor that capitalizes on CRMP2-NaV1.7 regulation to deliver safe analgesia in rodents.
- Published
- 2021
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35. Genomic variation within the maize stiff-stalk heterotic germplasm pool.
- Author
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Bornowski N, Michel KJ, Hamilton JP, Ou S, Seetharam AS, Jenkins J, Grimwood J, Plott C, Shu S, Talag J, Kennedy M, Hundley H, Singan VR, Barry K, Daum C, Yoshinaga Y, Schmutz J, Hirsch CN, Hufford MB, de Leon N, Kaeppler SM, and Buell CR
- Subjects
- Genomics, Haplotypes, Hybrid Vigor, Plant Breeding, Zea mays genetics
- Abstract
The stiff-stalk heterotic group in Maize (Zea mays L.) is an important source of inbreds used in U.S. commercial hybrid production. Founder inbreds B14, B37, B73, and, to a lesser extent, B84, are found in the pedigrees of a majority of commercial seed parent inbred lines. We created high-quality genome assemblies of B84 and four expired Plant Variety Protection (ex-PVP) lines LH145 representing B14, NKH8431 of mixed descent, PHB47 representing B37, and PHJ40, which is a Pioneer Hi-Bred International (PHI) early stiff-stalk type. Sequence was generated using long-read sequencing achieving highly contiguous assemblies of 2.13-2.18 Gbp with N50 scaffold lengths >200 Mbp. Inbred-specific gene annotations were generated using a core five-tissue gene expression atlas, whereas transposable element (TE) annotation was conducted using de novo and homology-directed methodologies. Compared with the reference inbred B73, synteny analyses revealed extensive collinearity across the five stiff-stalk genomes, although unique components of the maize pangenome were detected. Comparison of this set of stiff-stalk inbreds with the original Iowa Stiff Stalk Synthetic breeding population revealed that these inbreds represent only a proportion of variation in the original stiff-stalk pool and there are highly conserved haplotypes in released public and ex-Plant Variety Protection inbreds. Despite the reduction in variation from the original stiff-stalk population, substantial genetic and genomic variation was identified supporting the potential for continued breeding success in this pool. The assemblies described here represent stiff-stalk inbreds that have historical and commercial relevance and provide further insight into the emerging maize pangenome., (© 2021 The Authors. The Plant Genome published by Wiley Periodicals LLC on behalf of Crop Science Society of America.)
- Published
- 2021
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36. Effect of thermal treatment on the stability of Na-Mn-W/SiO 2 catalyst for the oxidative coupling of methane.
- Author
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Matras D, Vamvakeros A, Jacques SDM, Grosjean N, Rollins B, Poulston S, Stenning GBG, Godini HR, Drnec J, Cernik RJ, and Beale AM
- Abstract
In this study, we investigate the effect of thermal treatment/calcination on the stability and activity of a Na-Mn-W/SiO
2 catalyst for the oxidative coupling of methane. The catalyst performance and characterisation measurements suggest that the W species are directly involved in the catalyst active site responsible for CH4 conversion. Under operating conditions, the active components, present in the form of a Na-W-O-Mn molten state, are highly mobile and volatile. By varying the parameters of the calcination protocol, it was shown that these molten components can be partially stabilised, resulting in a catalyst with lower activity (due to loss of surface area) but higher stability even for long duration OCM reaction experiments.- Published
- 2021
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37. From Qualitative to Quantitative Analysis of Activity and Property Landscapes.
- Author
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Maggiora G, Medina-Franco JL, Iqbal J, Vogt M, and Bajorath J
- Subjects
- Structure-Activity Relationship
- Abstract
Activity or, more generally, property landscapes (PLs) have been considered as an attractive way to visualize and explore structure-property relationships (SPRs) contained in large data sets of chemical compounds. For graphical analysis, three-dimensional representations reminiscent of natural landscapes are particularly intuitive. So far, the use of such landscape models has essentially been confined to qualitative assessment. We describe recent efforts to analyze PLs in a more quantitative manner, which make it possible to calculate topographical similarity values for comparison of landscape models as a measure of relative SPR information content.
- Published
- 2020
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38. Informatics Approaches for Recognition, Management, and Prevention of Occupational Respiratory Disease.
- Author
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Harber P and Leroy G
- Subjects
- Humans, Machine Learning, Informatics methods, Lung Diseases diagnosis, Lung Diseases prevention & control, Occupational Diseases diagnosis, Occupational Diseases prevention & control, Occupational Exposure adverse effects
- Abstract
Computer and information systems can improve occupational respiratory disease prevention and surveillance by providing efficient resources for patients, workers, clinicians, and public health practitioners. Advances include interlinking electronic health records, autocoding surveillance data, clinical decision support systems, and social media applications for acquiring and disseminating information. Obstacles to advances include inflexible hierarchical coding schemes, inadequate occupational health electronic health record systems, and inadequate public focus on occupational respiratory disease. Potentially transformative approaches include machine learning, natural language processing, and improved ontologies., Competing Interests: Disclosure The authors have no conflict of interest, nor specific funding for this work., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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39. Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.
- Author
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Zaim SR, Kenost C, Berghout J, Chiu W, Wilson L, Zhang HH, and Lussier YA
- Abstract
An amendment to this paper has been published and can be accessed via the original article.
- Published
- 2020
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40. In situ X-ray diffraction computed tomography studies examining the thermal and chemical stabilities of working Ba 0.5 Sr 0.5 Co 0.8 Fe 0.2 O 3- δ membranes during oxidative coupling of methane.
- Author
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Matras D, Vamvakeros A, Jacques SDM, Middelkoop V, Vaughan G, Agote Aran M, Cernik RJ, and Beale AM
- Abstract
In this study we present the results from two in situ X-ray diffraction computed tomography experiments of catalytic membrane reactors (CMRs) using Ba0.5Sr0.5Co0.8Fe0.2O3-δ (BSCF) hollow fibre membranes and Na-Mn-W/SiO2 catalyst during the oxidative coupling of methane (OCM) reaction. The negative impact of CO2, when added to the inlet gas stream, is seen to be mainly related to the C2+ yield, while no evidence of carbonate phase(s) formation is found during the OCM experiments. The main degradation mechanism of the CMR is suggested to be primarily associated with the solid-state evolution of the BSCF phase rather than the presence of CO2. Specifically, in situ XRD-CT and post-mortem SEM/EDX measurements revealed a collapse of the cubic BSCF phase and subsequent formation of secondary phases, which include needle-like structures and hexagonal Ba6Co4O12 and formation of a BaWO4 layer, the latter being a result of chemical interaction between the membrane and catalyst materials at high temperatures.
- Published
- 2020
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41. binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.
- Author
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Rachid Zaim S, Kenost C, Berghout J, Chiu W, Wilson L, Zhang HH, and Lussier YA
- Subjects
- Biomarkers, Tumor metabolism, Breast Neoplasms diagnosis, Computational Biology methods, Female, Humans, Kidney Neoplasms diagnosis, Algorithms, Biomarkers metabolism
- Abstract
Background: In this era of data science-driven bioinformatics, machine learning research has focused on feature selection as users want more interpretation and post-hoc analyses for biomarker detection. However, when there are more features (i.e., transcripts) than samples (i.e., mice or human samples) in a study, it poses major statistical challenges in biomarker detection tasks as traditional statistical techniques are underpowered in high dimension. Second and third order interactions of these features pose a substantial combinatoric dimensional challenge. In computational biology, random forest (RF) classifiers are widely used due to their flexibility, powerful performance, their ability to rank features, and their robustness to the "P > > N" high-dimensional limitation that many matrix regression algorithms face. We propose binomialRF, a feature selection technique in RFs that provides an alternative interpretation for features using a correlated binomial distribution and scales efficiently to analyze multiway interactions., Results: In both simulations and validation studies using datasets from the TCGA and UCI repositories, binomialRF showed computational gains (up to 5 to 300 times faster) while maintaining competitive variable precision and recall in identifying biomarkers' main effects and interactions. In two clinical studies, the binomialRF algorithm prioritizes previously-published relevant pathological molecular mechanisms (features) with high classification precision and recall using features alone, as well as with their statistical interactions alone., Conclusion: binomialRF extends upon previous methods for identifying interpretable features in RFs and brings them together under a correlated binomial distribution to create an efficient hypothesis testing algorithm that identifies biomarkers' main effects and interactions. Preliminary results in simulations demonstrate computational gains while retaining competitive model selection and classification accuracies. Future work will extend this framework to incorporate ontologies that provide pathway-level feature selection from gene expression input data.
- Published
- 2020
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42. Putative roles of SLC7A5 (LAT1) transporter in pain.
- Author
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Alles SRA, Gomez K, Moutal A, and Khanna R
- Abstract
Large amino acid transporter 1 (LAT1), also known as SLC7A5, is an essential amino acid transporter that forms a heterodimeric complex with the glycoprotein cell-surface antigen heavy chain (4F2hc (CD98, SLC3A2)). Within nociceptive pathways, LAT1 is expressed in the dorsal root ganglia and spinal cord. Although LAT1 expression is upregulated following spinal cord injury, little is known about LAT1 in neuropathic pain. To date, only circumstantial evidence supports LAT1/4F2hc's role in pain. Notably, LAT1's expression and regulation link it to key cell types and pathways implicated in pain. Transcriptional regulation of LAT1 expression occurs via the Wnt/frizzled/β-catenin signal transduction pathway, which has been shown to be involved in chronic pain. The LAT1/4F2hc complex may also be involved in pain pathways related to T- and B-cells. LAT1's expression induces activation of the mammalian target of rapamycin (mTOR) signaling axis, which is involved in inflammation and neuropathic pain. Similarly, hypoxia and cancer induce activation of hypoxia-inducible factor 2 alpha, promoting not only LAT1's expression but also mTORC1's activation. Perhaps the strongest evidence linking LAT1 to pain is its interactions with key voltage-gated ion channels connected to nociception, namely the voltage-gated potassium channels Kv1.1 and Kv1.2 and the voltage-gated sodium channel Nav1.7. Through functional regulation of these channels, LAT1 may play a role in governing the excitatory to inhibitory ratio which is altered in chronic neuropathic pain states. Remarkably, the most direct role for LAT1 in pain is to mediate the influx of gabapentin and pregabalin, two first-line neuropathic pain drugs, that indirectly inhibit high voltage-activated calcium channel auxiliary subunit α2δ-1. In this review, we discuss the expression, regulation, relevant signaling pathways, and protein interactions of LAT1 that may link it to the development and/or maintenance of pain. We hypothesize that LAT1 expressed in nociceptive pathways may be a viable new target in pain., Competing Interests: R. Khanna is the co-founder of Regulonix LLC, a company developing non-opioids drugs for chronic pain. In addition, R. Khanna has patents US10287334 and US10441586 issued to Regulonix LLC. The remaining authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2020 Published by Elsevier Inc.)
- Published
- 2020
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43. Differential expression of Cdk5-phosphorylated CRMP2 following a spared nerve injury.
- Author
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Moutal A, Ji Y, Bellampalli SS, and Khanna R
- Subjects
- Animals, Fluorescence, Ganglia, Spinal metabolism, Ganglia, Spinal pathology, Hyperalgesia metabolism, Lumbar Vertebrae metabolism, Male, Neurons metabolism, Phosphorylation, Protein Binding, Rats, Sprague-Dawley, Sciatic Nerve pathology, Skin pathology, Spinal Cord Dorsal Horn metabolism, Cyclin-Dependent Kinase 5 metabolism, Intercellular Signaling Peptides and Proteins metabolism, Nerve Tissue Proteins metabolism, Sciatic Nerve injuries, Sciatic Nerve metabolism
- Abstract
Effective treatment of high-impact pain patients is one of the major stated goals of the National Pain Strategy in the United States. Identification of new targets and mechanisms underlying neuropathic pain will be critical in developing new target-specific medications for better neuropathic pain management. We recently discovered that peripheral nerve injury-induced upregulation of an axonal guidance phosphoprotein collapsin response mediator protein 2 (CRMP2) and the N-type voltage-gated calcium (CaV2.2) as well as the NaV1.7 voltage-gated sodium channel, correlates with the development of neuropathic pain. In our previous studies, we found that interfering with the phosphorylation status of CRMP2 is sufficient to confer protection from chronic pain. Here we examined the expression of CRMP2 and CRMP2 phosphorylated by cyclin-dependent kinase 5 (Cdk5, on serine residue 522 (S522)) in sciatic nerve, nerve terminals of the glabrous skin, and in select subpopulations of DRG neurons in the SNI model of neuropathic pain. By enhancing our understanding of the phosphoregulatory status of CRMP2 within DRG subpopulations, we may be in a better position to design novel pharmacological interventions for chronic pain.
- Published
- 2020
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44. Why is Zeaxanthin the Most Concentrated Xanthophyll in the Central Fovea?
- Author
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Widomska J, SanGiovanni JP, and Subczynski WK
- Subjects
- Fruit, Humans, Lipid Bilayers, Lutein chemistry, Macular Degeneration prevention & control, Oxidation-Reduction, Oxidative Stress, Vegetables, Zeaxanthins chemistry, Eating physiology, Fovea Centralis metabolism, Lutein metabolism, Nutritional Physiological Phenomena physiology, Zeaxanthins metabolism
- Abstract
Diet-based xanthophylls (zeaxanthin and lutein) are conditionally essential polar carotenoids preferentially accreted in high concentrations (1 mM) to the central retina, where they have the capacity to impart unique physiologically significant biophysical biochemical properties implicated in cell function, rescue, and survival. Macular xanthophylls interact with membrane-bound proteins and lipids to absorb/attenuate light energy, modulate oxidative stress and redox balance, and influence signal transduction cascades implicated in the pathophysiology of age-related macular degeneration. There is exclusive transport, sequestration, and appreciable bioamplification of macular xanthophylls from the circulating carotenoid pool to the retina and within the retina to regions required for high-resolution sensory processing. The distribution of diet-based macular xanthophylls and the lutein metabolite meso-zeaxanthin varies considerably by retinal eccentricity. Zeaxanthin concentrations are 2.5-fold higher than lutein in the cone-dense central fovea. This is an ~20-fold increase in the molar ratio relative to eccentric retinal regions with biochemically detectable macular xanthophylls. In this review, we discuss how the differences in the specific properties of lutein and zeaxanthin could help explain the preferential accumulation of zeaxanthin in the most vulnerable region of the macula., Competing Interests: Dr. SanGiovanni was in the central leadership of AREDS and AREDS2; he was involved in planning and implementing the major aspects of AREDS2. Dr. SanGiovanni has received in vivo retinal imaging measurement technology from ZeaVision. The other authors declare no conflict of interest.
- Published
- 2020
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45. A Novel Capsid Binding Inhibitor Displays Potent Antiviral Activity against Enterovirus D68.
- Author
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Ma C, Hu Y, Zhang J, Musharrafieh R, and Wang J
- Subjects
- Antiviral Agents chemistry, Capsid chemistry, Capsid metabolism, Enterovirus D, Human chemistry, Enterovirus D, Human genetics, Enterovirus D, Human physiology, Humans, Molecular Docking Simulation, Tetrazoles chemistry, Tetrazoles pharmacology, Virus Attachment drug effects, Antiviral Agents pharmacology, Capsid drug effects, Enterovirus D, Human drug effects, Enterovirus Infections virology
- Abstract
Enterovirus D68 (EV-D68) is a respiratory viral pathogen that primarily infects children under the age of 8. Although EV-D68 infection typically leads to moderate to severe respiratory illnesses, recent years have seen increasing cases of EV-D68 triggered neurological complications such as acute flaccid myelitis (AFM). There is currently no vaccine or antiviral available for EV-D68; we therefore aimed to develop potent and specific small molecule antivirals against EV-D68. In this study, we report our discovery of a viral capsid inhibitor R856932 that inhibits multiple contemporary EV-D68 strains with single-digit to submicromolar efficacy. Mechanistic studies have shown that the tetrazole compound R856932 binds to the hydrophobic pocket of viral capsid protein VP1, thereby preventing viral uncoating and release of viral genome in the infected cells. The mechanism of action of R856932 was confirmed by time-of-addition, Western blot, RT-qPCR, viral heat inactivation, serial viral passage, and reverse genetics experiments. A single mutation located at VP1, A129V, confers resistance against R856932 . However, a recombination virus encoding VP1-A129V appeared to have compromised fitness of replication compared to the wild-type EV-D68 virus as shown by the competition growth assay. Overall, the hit compound identified in this study, R856932 , represents a promising starting point with a confirmed mechanism of action that can be further developed into EV-D68 antivirals.
- Published
- 2019
- Full Text
- View/download PDF
46. Genomic analysis of the four ecologically distinct cactus host populations of Drosophila mojavensis.
- Author
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Allan CW and Matzkin LM
- Subjects
- Adaptation, Physiological, Animals, Drosophila genetics, Ecosystem, Evolution, Molecular, Gene Expression Profiling, Gene Expression Regulation, Gene Regulatory Networks, High-Throughput Nucleotide Sequencing veterinary, United States, Cactaceae parasitology, Drosophila physiology, Drosophila Proteins genetics, Whole Genome Sequencing methods
- Abstract
Background: Relationships between an organism and its environment can be fundamental in the understanding how populations change over time and species arise. Local ecological conditions can shape variation at multiple levels, among these are the evolutionary history and trajectories of coding genes. This study examines the rate of molecular evolution at protein-coding genes throughout the genome in response to host adaptation in the cactophilic Drosophila mojavensis. These insects are intimately associated with cactus necroses, developing as larvae and feeding as adults in these necrotic tissues. Drosophila mojavensis is composed of four isolated populations across the deserts of western North America and each population has adapted to utilize different cacti that are chemically, nutritionally, and structurally distinct., Results: High coverage Illumina sequencing was performed on three previously unsequenced populations of D. mojavensis. Genomes were assembled using the previously sequenced genome of D. mojavensis from Santa Catalina Island (USA) as a template. Protein coding genes were aligned across all four populations and rates of protein evolution were determined for all loci using a several approaches., Conclusions: Loci that exhibited elevated rates of molecular evolution tend to be shorter, have fewer exons, low expression, be transcriptionally responsive to cactus host use and have fixed expression differences across the four cactus host populations. Fast evolving genes were involved with metabolism, detoxification, chemosensory reception, reproduction and behavior. Results of this study give insight into the process and the genomic consequences of local ecological adaptation.
- Published
- 2019
- Full Text
- View/download PDF
47. Analysis of beta-blocker bioconcentration in brown planaria (Girardia dorotocephala) and its effects on regeneration.
- Author
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AminiTabrizi R, Hassan D, Davis R, and Tucker KR
- Subjects
- Adrenergic beta-Antagonists pharmacokinetics, Animals, Chromatography, Liquid, Ecotoxicology methods, Lethal Dose 50, Regeneration physiology, Tandem Mass Spectrometry, Toxicity Tests, Acute, Water Pollutants, Chemical pharmacokinetics, Adrenergic beta-Antagonists toxicity, Planarians drug effects, Planarians physiology, Regeneration drug effects, Water Pollutants, Chemical toxicity
- Abstract
Production, distribution, and disposal of pharmaceutical products, including beta-blockers, have become a global issue. Beta-blockers are known to persist in the environment months after their release and may result in the disruption of the homeostatic system in non-target organisms. Here, we study the bioconcentration of three of the most commonly used beta-blockers and their effect on the regeneration of Girardia dorotocephala, a freshwater brown planarian. Acute toxicity tests determined LC
50 s for acebutolol, metoprolol, and propranolol to be 778 mg/L, 711 mg/L, and 111 mg/L, respectively. The quantification and analysis of beta-blocker bioconcentration during acute exposure were performed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). After 4 days of exposure to beta-blockers, the bioconcentration drastically decreased for all three beta-blockers at all exposure levels, suggesting that an effective mechanism to reduce uptake or excrete beta-blockers could be present. Additionally, Girardia dorotocephala were cut proximal to the head and the quality of regeneration was documented from each fragment daily. No significant difference was visually observed after 2 weeks of regeneration between the brown planarians placed in beta-blocker solution and those placed in control solution.- Published
- 2019
- Full Text
- View/download PDF
48. Disease outbreaks, healthcare utilization, and on-time immunization in the first year of life.
- Author
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Schaller J, Schulkind L, and Shapiro T
- Subjects
- Diphtheria-Tetanus-acellular Pertussis Vaccines therapeutic use, Female, Health Services Accessibility statistics & numerical data, Healthcare Disparities statistics & numerical data, Humans, Infant, Male, Patient Acceptance of Health Care psychology, Socioeconomic Factors, United States epidemiology, Vaccination Coverage statistics & numerical data, Vaccines therapeutic use, Disease Outbreaks statistics & numerical data, Parents psychology, Patient Acceptance of Health Care statistics & numerical data, Pertussis Vaccine therapeutic use, Whooping Cough epidemiology
- Abstract
This paper examines the determinants of parental decisions about infant immunization. Using the exact timing of vaccination relative to birth, we estimate the effects of local pertussis outbreaks occurring in utero and during the first two months of life on the likelihood of on-time initial immunization for pertussis and other diseases. We find that parents respond to changes in perceived disease risk: pertussis outbreaks within a state increase the rate of on-time receipt of the pertussis vaccine at two months of age, particularly among low-socioeconomic status (SES) subgroups. In addition, we find that pertussis outbreaks increase the likelihood of immunization against other vaccine-preventable diseases. Spillover effects in low-SES subgroups are as large as direct effects and are present only for vaccines given during the same visit as the pertussis vaccine, which suggests that provider contact may be a key factor in infant vaccination decisions in poor families., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
49. Small-Molecule-Targeting Hairpin Loop of hTERT Promoter G-Quadruplex Induces Cancer Cell Death.
- Author
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Song JH, Kang HJ, Luevano LA, Gokhale V, Wu K, Pandey R, Sherry Chow HH, Hurley LH, and Kraft AS
- Subjects
- Animals, Apoptosis drug effects, Cell Death drug effects, Cell Line, Tumor, Cell Proliferation drug effects, Dose-Response Relationship, Drug, Humans, Male, Mice, Mice, SCID, Molecular Structure, Small Molecule Libraries chemistry, Structure-Activity Relationship, Telomerase metabolism, G-Quadruplexes drug effects, Small Molecule Libraries pharmacology, Telomerase antagonists & inhibitors
- Abstract
Increased telomerase activity is associated with malignancy and poor prognosis in human cancer, but the development of targeted agents has not yet provided clinical benefit. Here we report that, instead of targeting the telomerase enzyme directly, small molecules that bind to the G-hairpin of the hTERT G-quadruplex-forming sequence kill selectively malignant cells without altering the function of normal cells. RG260 targets the hTERT G-quadruplex stem-loop folding but not tetrad DNAs, leading to downregulation of hTERT expression. To improve physicochemical and pharmacokinetic properties, we derived a small-molecule analog, RG1603, from the parent compound. RG1603 induces mitochondrial defects including PGC1α and NRF2 inhibition and increases oxidative stress, followed by DNA damage and apoptosis. RG1603 injected as a single agent has tolerable toxicity while achieving strong anticancer efficacy in a tumor xenograft mouse model. These results demonstrate a unique approach to inhibiting the hTERT that functions by impairing mitochondrial activity, inducing cell death., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
50. Unravelling the spatial dependency of the complex solid-state chemistry of Pb in a paint micro-sample from Rembrandt's Homer using XRD-CT.
- Author
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Price SWT, Van Loon A, Keune K, Parsons AD, Murray C, Beale AM, and Mosselmans JFW
- Abstract
The surface of many Old Master paintings has been affected by the appearance of whitish lead-rich deposits, which are often difficult to fully characterise, thereby hindering conservation. A paint micro-sample from Rembrandt's Homer was imaged using X-ray Diffraction Computed Tomography (XRD-CT) in order to understand the evolving solid-state Pb chemistry from the painting surface and beneath. The surface crust was identified as a complex mixture of lead sulfates. From the S : Pb ratios throughout the paint layer, we can conclude that S is from an external source in the form of SO2, and that the nature of Pb-SO4 product is dependent on the degree of diffusion/absorption of SO2 into the paint layers.
- Published
- 2019
- Full Text
- View/download PDF
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