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Inland waters are important emitters of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we review the state of the art in estimating inland water GHG budgets at global scale, which has substantially advanced since the first phase of RECCAP nearly 10 years ago. The development of increasingly sophisticated upscaling techniques, including statistical prediction and process-based models, allows for spatially explicit estimates that are needed for regionalized assessments of continental GHG budgets such as those established for RECCAP. A few recent estimates also resolve the seasonal and/or interannual variability in inland water GHG emissions. Nonetheless, the global-scale assessment of inland water emissions remains challenging because of limited spatial and temporal coverage of observations and persisting uncertainties in the abundance and distribution of inland water surface areas. To decrease these uncertainties, more empirical work on the contributions of hot-spots and hot-moments to overall inland water GHG emissions is particularly needed., Funding Agencies|French state aid; European Union; US National Science Foundation CAREER Award; National Key Research and Development Program of China; NASAs Interdisciplinary Research in Earth Science (IDS) Program; NASA Terrestrial Ecology and Tropospheric Composition Programs; Charles University [ANR-16-CONV-0003]; NERC [101060423, T.0191.23 CH4-lakes]; European Research Council (ERC) [101003536, 2018-01794]; Swedish Research Council [EAR 2145628]; FORMAS; FRS-FRNS PDR project; Italian Ministry of Education, University and Research (MIUR) [DEB 2143449]; project iNEST - Interconnected Nord-Est Innovation Ecosystem [2021YFC3200401]; Research Grants Council of Hong Kong [PRIMUS/23/SCI/013]; US National Science Foundation award [NE/R000751/1]

As the second largest area of contiguous tropical rainforest and second largest river basin in the world, the Congo Basin has a significant role to play in the global carbon (C) cycle. For the present day, it has been shown that a significant proportion of global terrestrial net primary productivity (NPP) is transferred laterally to the land-ocean aquatic continuum (LOAC) as dissolved CO2, dissolved organic carbon (DOC), and particulate organic carbon (POC). Whilst the importance of LOAC fluxes in the Congo Basin has been demonstrated for the present day, it is not known to what extent these fluxes have been perturbed historically, how they are likely to change under future climate change and land use scenarios, and in turn what impact these changes might have on the overall C cycle of the basin. Here we apply the ORCHILEAK model to the Congo Basin and estimate that 4% of terrestrial NPP (NPPD5800-166 TgC yr-1) is currently exported from soils and vegetation to inland waters. Further, our results suggest that aquatic C fluxes may have undergone considerable perturbation since 1861 to the present day, with aquatic CO2 evasion and C export to the coast increasing by 26% (186-41 to 235-54 TgC yr-1) and 25% (12-3 to 15-4 TgC yr-1), respectively, largely because of rising atmospheric CO2 concentrations. Moreover, under climate scenario RCP6.0 we predict that this perturbation could continue; over the full simulation period (1861-2099), we estimate that aquatic CO2 evasion and C export to the coast could increase by 79% and 67 %, respectively. Finally, we show that the proportion of terrestrial NPP lost to the LOAC could increase from approximately 3% to 5% from 1861-2099 as a result of increasing atmospheric CO2 concentrations and climate change. However, our future projections of the Congo Basin C fluxes in particular need to be interpreted with some caution due to model limitations. We discuss these limitations, including the wider challenges associated with applying t, SCOPUS: ar.j, info:eu-repo/semantics/published

The river–floodplain network plays an important role in the carbon (C) cycle of the Amazon basin, as it transports and processes a significant fraction of the C fixed by terrestrial vegetation, most of which evades as CO 2 from rivers and floodplains back to the atmosphere. There is empirical evidence that exceptionally dry or wet years have an impact on the net C balance in the Amazon. While seasonal and interannual variations in hydrology have a direct impact on the amounts of C transferred through the river–floodplain system, it is not known how far the variation of these fluxes affects the overall Amazon C balance. Here, we introduce a new wetland forcing file for the ORCHILEAK model, which improves the representation of floodplain dynamics and allows us to closely reproduce data-driven estimates of net C exports through the river–floodplain network. Based on this new wetland forcing and two climate forcing datasets, we show that across the Amazon, the percentage of net primary productivity lost to the river–floodplain system is highly variable at the interannual timescale, and wet years fuel aquatic CO 2 evasion. However, at the same time overall net ecosystem productivity (NEP) and C sequestration are highest during wet years, partly due to reduced decomposition rates in water-logged floodplain soils. It is years with the lowest discharge and floodplain inundation, often associated with El Nino events, that have the lowest NEP and the highest total (terrestrial plus aquatic) CO 2 emissions back to atmosphere. Furthermore, we find that aquatic C fluxes display greater variation than terrestrial C fluxes, and that this variation significantly dampens the interannual variability in NEP of the Amazon basin. These results call for a more integrative view of the C fluxes through the vegetation-soil-river-floodplain continuum, which directly places aquatic C fluxes into the overall C budget of the Amazon basin., SCOPUS: ar.j, info:eu-repo/semantics/published

Previous research has shown a close relationship between the terrestrial and aquatic carbon (C) cycles, namely that part of the C fixed via terrestrial net primary production (NPP) is exported to inland waters. In turn, it has been demonstrated that once in the freshwater system C can not only be transported laterally as dissolved organic carbon (DOC), particulate organic carbon (POC) and dissolved inorganic carbon (DIC) but is also mineralized and evaded back to the atmosphere as CO2, or buried in sediments. A number of hotspot areas of aquatic CO2 evasion have been identified but there are considerable gaps in our knowledge, particularly associated with understanding and accounting for the temporal and spatial variation of aquatic C fluxes at regional to global scales, which we know from local scale studies, to be substantial. In this thesis, three important regional hotspots of LOAC activity were identified, where significant gaps in our understanding remain.For the boreal region, an empirical model is developed to produce the first high resolution maps of boreal lake pCO2 and CO2 evasion, providing a new estimate for total evasion from boreal lakes of 189 (74–347) Tg C yr-1, which is more than double the previous best estimate. The model is also used along with future projections of terrestrial NPP and precipitation, to predict future lake CO2 evasion under future climate change and land-use scenarios, and it is found that even under the most conservative scenario CO2 evasion from boreal lakes may increase 38% by 2100. For the Amazon Basin, the ORCHILEAK land surface model driven by a newly developed wetland forcing file, is used to show that the export of C to and CO2 evasion from inland waters is highly interannually variable; greatest during wet years and lowest during droughts. However, at the same time overall net ecosystem productivity (NEP) and C sequestration is highest during wet years, partly due to reduced decomposition rates in water-logged floodplai, L’état de l’art dans le domaine a montré qu’il y avait un lien étroit entre les cycles du carbone terrestre et aquatique :en effet, une partie du carbone fixé par photosynthèse (productivité primaire brute) est transférée vers les milieux aquatiques continentaux pour être ensuite transporté latéralement sous forme de carbone organique dissous (COD), de carbone organique particulaire (COP), de carbone inorganique dissous (CID). Durant ce transfert latéral, le carbone peut être minéralisé puis réémis vers l’atmosphère sous forme de CO2 ou enfoui dans les sédiments. Cependant, nous sommes encore loin de bien comprendre et surtout de quantifier les variations temporelles et spatiales des flux de carbones à l’échelle régionale et globale, même si les études faites à l’échelle locale nous montrent qu’elles sont importantes. Au cours de cette thèse, nous nous sommes focalisés sur 3 grandes régions pour lesquelles la connaissance des flux de carbone le long du continuum aquatique reliant les écosystèmes terrestres aux océans étaient encore très parcellaire.Pour la région boréale, un modèle empirique a été développé afin de produire les premières cartes à haute résolution de pCO2 et d’émission de CO2 pour les lacs boréaux. Les résultats du modèle nous ont permis de contraindre les émissions totales de CO2 pour les lacs boréaux à 189 (74-347) Tg C an-1, soit plus du double des estimations précédentes. Ce modèle a ensuite été couplé aux projections de production primaire brute terrestre et de précipitations afin de prédire les émissions de CO2 pour ces lacs pour différents scénarios de changement climatique et d’occupation des sols. Les résultats montrent que même en prenant le scénario le plus conservatif, les émissions de CO2 des lacs boréaux augmenteraient de 38% d’ici 2100.Pour le bassin de l’Amazone, le modèle d’écosystème terrestre ORCHILEAK, paramétré par de nouvelles donnés de forçage des zones humides, a été utilisé pour démontrer que l’export de carbone terrestre ver, Doctorat en Sciences, info:eu-repo/semantics/nonPublished

The importance of northern peatlands in the global carbon cycle has been recognized, especially for long-term changes. Yet, the complex interactions between climate and peatland hydrology, carbon storage, and area dynamics make it challenging to represent these systems in land surface models. This study describes how peatlands are included as an independent sub-grid hydrological soil unit (HSU) in the ORCHIDEE-MICT land surface model. The peatland soil column in this tile is characterized by multilayered vertical water and carbon transport and peat-specific hydrological properties. The cost-efficient version of TOPMODEL and the scheme of peatland initiation and development from the DYPTOP model are implemented and adjusted to simulate spatial and temporal dynamics of peatland. The model is tested across a range of northern peatland sites and for gridded simulations over the Northern Hemisphere (30N). Simulated northern peatland area (3.9 million km2), peat carbon stock (463 Pg C), and peat depth are generally consistent with observed estimates of peatland area (3.4-4.0 million km2), peat carbon (270-540 Pg C), and data compilations of peat core depths. Our results show that both net primary production (NPP) and heterotrophic respiration (HR) of northern peatlands increased over the past century in response to CO2 and climate change. NPP increased more rapidly than HR, and thus net ecosystem production (NEP) exhibited a positive trend, contributing a cumulative carbon storage of 11.13 Pg C since 1901, most of it being realized after the 1950s., SCOPUS: ar.j, info:eu-repo/semantics/published

Lakes (including reservoirs) are an important component of the global carbon (C) cycle, as acknowledged by the fifth assessment report of the IPCC. In the context of lakes, the boreal region is disproportionately important contributing to 27% of the worldwide lake area, despite representing just 14% of global land surface area. In this study, we used a statistical approach to derive a prediction equation for the partial pressure of CO2 (pCO2) in lakes as a function of lake area, terrestrial net primary productivity (NPP), and precipitation (r2 =.56), and to create the first high-resolution, circumboreal map (0.5°) of lake pCO2. The map of pCO2 was combined with lake area from the recently published GLOWABO database and three different estimates of the gas transfer velocity k to produce a resulting map of CO2 evasion (FCO2). For the boreal region, we estimate an average, lake area weighted, pCO2 of 966 (678–1,325) μatm and a total FCO2 of 189 (74–347) Tg C year−1, and evaluate the corresponding uncertainties based on Monte Carlo simulation. Our estimate of FCO2 is approximately twofold greater than previous estimates, as a result of methodological and data source differences. We use our results along with published estimates of the other C fluxes through inland waters to derive a C budget for the boreal region, and find that FCO2 from lakes is the most significant flux of the land-ocean aquatic continuum, and of a similar magnitude as emissions from forest fires. Using the model and applying it to spatially resolved projections of terrestrial NPP and precipitation while keeping everything else constant, we predict a 107% increase in boreal lake FCO2 under emission scenario RCP8.5 by 2100. Our projections are largely driven by increases in terrestrial NPP over the same period, showing the very close connection between the terrestrial and aquatic C cycle., SCOPUS: ar.j, info:eu-repo/semantics/published