1,570 results on '"Harvey, P. D."'
Search Results
2. A multiscale predictive digital twin for neurocardiac modulation
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Yang, Pei‐Chi, Rose, Adam, DeMarco, Kevin R, Dawson, John RD, Han, Yanxiao, Jeng, Mao‐Tsuen, Harvey, Robert D, Santana, L Fernando, Ripplinger, Crystal M, Vorobyov, Igor, Lewis, Timothy J, and Clancy, Colleen E
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Medical Physiology ,Biomedical and Clinical Sciences ,Heart Disease ,Neurosciences ,Minority Health ,Cardiovascular ,Bioengineering ,Networking and Information Technology R&D (NITRD) ,Humans ,Heart ,Autonomic Nervous System ,Arrhythmias ,Cardiac ,Parasympathetic Nervous System ,Sympathetic Nervous System ,Heart Rate ,Sinoatrial Node ,arrhythmia ,autonomic nervous system ,cardiac electrophysiology ,computational model ,digital twins ,parasympathetic ,sympathetic nervous system ,Biological Sciences ,Medical and Health Sciences ,Physiology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Cardiac function is tightly regulated by the autonomic nervous system (ANS). Activation of the sympathetic nervous system increases cardiac output by increasing heart rate and stroke volume, while parasympathetic nerve stimulation instantly slows heart rate. Importantly, imbalance in autonomic control of the heart has been implicated in the development of arrhythmias and heart failure. Understanding of the mechanisms and effects of autonomic stimulation is a major challenge because synapses in different regions of the heart result in multiple changes to heart function. For example, nerve synapses on the sinoatrial node (SAN) impact pacemaking, while synapses on contractile cells alter contraction and arrhythmia vulnerability. Here, we present a multiscale neurocardiac modelling and simulator tool that predicts the effect of efferent stimulation of the sympathetic and parasympathetic branches of the ANS on the cardiac SAN and ventricular myocardium. The model includes a layered representation of the ANS and reproduces firing properties measured experimentally. Model parameters are derived from experiments and atomistic simulations. The model is a first prototype of a digital twin that is applied to make predictions across all system scales, from subcellular signalling to pacemaker frequency to tissue level responses. We predict conditions under which autonomic imbalance induces proarrhythmia and can be modified to prevent or inhibit arrhythmia. In summary, the multiscale model constitutes a predictive digital twin framework to test and guide high-throughput prediction of novel neuromodulatory therapy. KEY POINTS: A multi-layered model representation of the autonomic nervous system that includes sympathetic and parasympathetic branches, each with sparse random intralayer connectivity, synaptic dynamics and conductance based integrate-and-fire neurons generates firing patterns in close agreement with experiment. A key feature of the neurocardiac computational model is the connection between the autonomic nervous system and both pacemaker and contractile cells, where modification to pacemaker frequency drives initiation of electrical signals in the contractile cells. We utilized atomic-scale molecular dynamics simulations to predict the association and dissociation rates of noradrenaline with the β-adrenergic receptor. Multiscale predictions demonstrate how autonomic imbalance may increase proclivity to arrhythmias or be used to terminate arrhythmias. The model serves as a first step towards a digital twin for predicting neuromodulation to prevent or reduce disease.
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- 2023
3. The influence of cortical activity on perception depends on behavioral state and sensory context
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Russell, Lloyd E., Fişek, Mehmet, Yang, Zidan, Tan, Lynn Pei, Packer, Adam M., Dalgleish, Henry W. P., Chettih, Selmaan N., Harvey, Christopher D., and Häusser, Michael
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- 2024
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4. Synaptic wiring motifs in posterior parietal cortex support decision-making
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Kuan, Aaron T., Bondanelli, Giulio, Driscoll, Laura N., Han, Julie, Kim, Minsu, Hildebrand, David G. C., Graham, Brett J., Wilson, Daniel E., Thomas, Logan A., Panzeri, Stefano, Harvey, Christopher D., and Lee, Wei-Chung Allen
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- 2024
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5. Piloting a Novel Daily Living Skills Assessment in Autistic Adolescents and Young Adults
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Wulff, Rachel A, Iosif, Ana-Maria, Krug, Marie K, Harvey, Philip D, and Solomon, Marjorie
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Psychology ,Applied and Developmental Psychology ,Mental Health ,Behavioral and Social Science ,Clinical Research ,Pediatric ,adaptive functioning ,computerized cognitive training ,cognition ,daily living skills ,Human society - Abstract
BackgroundThere are a few ecologically valid measurements of Daily Living Skills (DLS)-a critical component of adaptive functioning (AF)-for autistic adolescents and young adults. This is particularly important given that DLS predict outcomes as autistic adolescents transition to adulthood.MethodsWe pilot-tested the assessment section of two modules of the Computerized Functional Skills Assessment and Training program (CFSAT) in 25 autistic (n = 4 female) and 25 non-autistic (n = 6 female) adolescents and young adults to evaluate preliminary feasibility in an autistic sample. Tasks involved using an ATM and ticket-buying machine. We also assessed AF and DLS with a well-validated self-report questionnaire. We examined group differences in performance and relationships between performance on CFSAT and an existing measure of AF and DLS. We also conducted regression analyses to investigate the associations between age, IQ, executive functioning (EF), and CFSAT task performance.ResultsAll but one autistic participant were able to complete the CFSAT tasks. Autistic participants made more errors, but did not take longer to complete the task, than non-autistic participants. Performance correlated strongly with self-reported AF generally and DLS specifically. The regression analyses revealed that task performance was associated with EF in the autistic group, but not the non-autistic group.ConclusionsThese results provide preliminary support for the use of a new performance-based ecologically valid assessment of DLS in an autistic population. Two CFSAT modules were well-tolerated and detected differences in DLS ability. Strong correlations with an existing measure of AF suggest evidence of construct validity. The EF was associated with CFSAT task performance in autistic individuals. Such a tool could help identify individuals who would benefit from a DLS intervention.
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- 2023
6. AEROS: Oceanographic Hyperspectral Imaging and Argos-Tracking CubeSat
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Prendergast, Sophie, Payne, Cadence, Lifson, Miles, Haughwout, Christian, Tieppo, Marcos, Figueiredo, Paulo, Guerra, André, Costa, Alexander, Magalhães, Helder, Hormigo, Tiago, Câmara, Francisco, Mano, Carlos, Pinheiro, Pedro, Harvey, Alvin D., Macena, Bruno, Azevedo, Luis F., Martin, Miguel, Miranda, Tiago, Pereira, Eduardo, Faria, João, Castelão, Inês, Cecilio, Catarina, Castanho, Emanuel, Cahoy, Kerri, Coutinho, Manuel, Silva, Helder, and Fontes, Jorge
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Physics - Atmospheric and Oceanic Physics ,Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
AEROS is a 3U CubeSat pathfinder toward a future ocean-observing constellation, targeting the Portuguese Atlantic region. AEROS features a miniaturized, high-resolution Hyperspectral Imager (HSI), a 5MP RGB camera, and a Software Defined Radio (SDR). The sensor generated data will be processed and aggregated for end-users in a new web-based Data Analysis Center (DAC). The HSI has 150 spectrally contiguous bands covering visible to near-infrared with 10 nm bandwidth. The HSI collects ocean color data to support studies of oceanographic characteristics known to influence the spatio-temporal distribution and movement behavior of marine organisms. Usage of an SDR expands AEROS's operational and communication range and allows for remote reconfiguration. The SDR receives, demodulates, and retransmits short duration messages, from sources including tagged marine organisms, autonomous vehicles, subsurface floats, and buoys. The future DAC will collect, store, process, and analyze acquired data, taking advantage of its ability to disseminate data across the stakeholders and the scientific network. Correlation of animal-borne Argos platform locations and oceanographic data will advance fisheries management, ecosystem-based management, monitoring of marine protected areas, and bio-oceanographic research in the face of a rapidly changing environment. For example, correlation of oceanographic data collected by the HSI, geolocated with supplementary images from the RGB camera and fish locations, will provide researchers with near real-time estimates of essential oceanographic variables within areas selected by species of interest., Comment: 13 pages, 16 figures, Manuscript presented at the 73rd International Astronautical Congress, IAC 2022, Paris, France, 18 - 22 September 2022
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- 2022
7. Cross-diagnostic determinants of cognitive functioning: the muscarinic cholinergic receptor as a model system
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Jones, Sara E. and Harvey, Philip D.
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- 2023
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8. A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions
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Kira, Shinichiro, Safaai, Houman, Morcos, Ari S., Panzeri, Stefano, and Harvey, Christopher D.
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- 2023
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9. A cell-type-specific error-correction signal in the posterior parietal cortex
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Green, Jonathan, Bruno, Carissa A., Traunmüller, Lisa, Ding, Jennifer, Hrvatin, Siniša, Wilson, Daniel E., Khodadad, Thomas, Samuels, Jonathan, Greenberg, Michael E., and Harvey, Christopher D.
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- 2023
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10. Making Sense of the Matrix: A Qualitative Assessment and Commentary on Connecting Psychiatric Symptom Scale Items to the Research Domain Criteria (RDoC).
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Citrome, Leslie, Abi-Dargham, Anissa, Bilder, Robert M, Duffy, Ruth A, Dunlop, Boadie W, Harvey, Philip D, Pizzagalli, Diego A, Tamminga, Carol A, McIntyre, Roger S, and Kane, John M
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Biological Psychology ,Clinical and Health Psychology ,Psychology ,Applied and Developmental Psychology ,Brain Disorders ,Mental Health ,Good Health and Well Being ,Research domain criteria ,anxiety ,depression ,mental disorder ,psychosis ,rating scales - Abstract
The Research Domain Criteria (RDoC) initiative aims to organize research according to domains of brain function. Dysfunction within these domains leads to psychopathology that is classically measured with rating scales. Examining the correspondence between the specific measures assessed within rating scales and RDoC domains is necessary to assess the needs for new RDoC-focused scales. Such RDoC-focused scales have the potential of allowing translation of this work into the clinical domain of measuring psychopathology and designing treatment. Here, we describe an initial qualitative assessment by a group of 10 clinician-scientists of the alignment between RDoC domains and the items within five commonly used rating scales. In this commentary, we report limited correspondence and make recommendations for future work needed to address these limitations.
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- 2022
11. The global burden of adolescent and young adult cancer in 2019: a systematic analysis for the Global Burden of Disease Study 2019
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Collaborators, GBD 2019 Adolescent Young Adult Cancer, Alvarez, Elysia M, Force, Lisa M, Xu, Rixing, Compton, Kelly, Lu, Dan, Henrikson, Hannah Jacqueline, Kocarnik, Jonathan M, Harvey, James D, Pennini, Alyssa, Dean, Frances E, Fu, Weijia, Vargas, Martina T, Keegan, Theresa HM, Ariffin, Hany, Barr, Ronald D, Erdomaeva, Yana Arturovna, Gunasekera, D Sanjeeva, John-Akinola, Yetunde O, Ketterl, Tyler G, Kutluk, Tezer, Malogolowkin, Marcio Henrique, Mathur, Prashant, Radhakrishnan, Venkatraman, Ries, Lynn Ann Gloeckler, Rodriguez-Galindo, Carlos, Sagoyan, Garik Barisovich, Sultan, Iyad, Abbasi, Behzad, Abbasi-Kangevari, Mohsen, Abbasi-Kangevari, Zeinab, Abbastabar, Hedayat, Abdelmasseh, Michael, Abd-Elsalam, Sherief, Abdoli, Amir, Abebe, Haimanot, Abedi, Aidin, Abidi, Hassan, Abolhassani, Hassan, Ali, Hiwa Abubaker, Abu-Gharbieh, Eman, Achappa, Basavaprabhu, Acuna, Juan Manuel, Adedeji, Isaac Akinkunmi, Adegboye, Oyelola A, Adnani, Qorinah Estiningtyas Sakilah, Advani, Shailesh M, Afzal, Muhammad Sohail, Meybodi, Mohamad Aghaie, Ahadinezhad, Bahman, Ahinkorah, Bright Opoku, Ahmad, Sajjad, Ahmadi, Sepideh, Ahmed, Muktar Beshir, Rashid, Tarik Ahmed, Salih, Yusra Ahmed, Aiman, Wajeeha, Akalu, Gizachew Taddesse, Al Hamad, Hanadi, Alahdab, Fares, AlAmodi, Abdulhadi A, Alanezi, Fahad Mashhour, Alanzi, Turki M, Alem, Adugnaw Zeleke, Alem, Dejene Tsegaye, Alemayehu, Yosef, Alhalaiqa, Fadwa Naji, Alhassan, Robert Kaba, Ali, Saqib, Alicandro, Gianfranco, Alipour, Vahid, Aljunid, Syed Mohamed, Alkhayyat, Motasem, Alluri, Sunitha, Almasri, Nihad A, Al-Maweri, Sadeq Ali, Almustanyir, Sami, Al-Raddadi, Rajaa M, Alvis-Guzman, Nelson, Ameyaw, Edward Kwabena, Amini, Saeed, Amu, Hubert, Ancuceanu, Robert, Andrei, Catalina Liliana, Andrei, Tudorel, Ansari, Fereshteh, Ansari-Moghaddam, Alireza, Anvari, Davood, Anyasodor, Anayochukwu Edward, Arabloo, Jalal, Arab-Zozani, Morteza, Argaw, Ayele Mamo, Arshad, Muhammad, Arulappan, Judie, Aryannejad, Armin, Asemi, Zatollah, Jafarabadi, Mohammad Asghari, Atashzar, Mohammad Reza, Atorkey, and Atreya, Alok
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Rare Diseases ,Cancer ,Pediatric ,Burden of Illness ,Prevention ,2.4 Surveillance and distribution ,Good Health and Well Being ,Adolescent ,Adult ,Cause of Death ,Disability-Adjusted Life Years ,Female ,Global Burden of Disease ,Global Health ,Humans ,Incidence ,Life Expectancy ,Male ,Mortality ,Neoplasms ,Prevalence ,Risk Factors ,Socioeconomic Factors ,Young Adult ,GBD 2019 Adolescent Young Adult Cancer Collaborators ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
BackgroundIn estimating the global burden of cancer, adolescents and young adults with cancer are often overlooked, despite being a distinct subgroup with unique epidemiology, clinical care needs, and societal impact. Comprehensive estimates of the global cancer burden in adolescents and young adults (aged 15-39 years) are lacking. To address this gap, we analysed results from the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2019, with a focus on the outcome of disability-adjusted life-years (DALYs), to inform global cancer control measures in adolescents and young adults.MethodsUsing the GBD 2019 methodology, international mortality data were collected from vital registration systems, verbal autopsies, and population-based cancer registry inputs modelled with mortality-to-incidence ratios (MIRs). Incidence was computed with mortality estimates and corresponding MIRs. Prevalence estimates were calculated using modelled survival and multiplied by disability weights to obtain years lived with disability (YLDs). Years of life lost (YLLs) were calculated as age-specific cancer deaths multiplied by the standard life expectancy at the age of death. The main outcome was DALYs (the sum of YLLs and YLDs). Estimates were presented globally and by Socio-demographic Index (SDI) quintiles (countries ranked and divided into five equal SDI groups), and all estimates were presented with corresponding 95% uncertainty intervals (UIs). For this analysis, we used the age range of 15-39 years to define adolescents and young adults.FindingsThere were 1·19 million (95% UI 1·11-1·28) incident cancer cases and 396 000 (370 000-425 000) deaths due to cancer among people aged 15-39 years worldwide in 2019. The highest age-standardised incidence rates occurred in high SDI (59·6 [54·5-65·7] per 100 000 person-years) and high-middle SDI countries (53·2 [48·8-57·9] per 100 000 person-years), while the highest age-standardised mortality rates were in low-middle SDI (14·2 [12·9-15·6] per 100 000 person-years) and middle SDI (13·6 [12·6-14·8] per 100 000 person-years) countries. In 2019, adolescent and young adult cancers contributed 23·5 million (21·9-25·2) DALYs to the global burden of disease, of which 2·7% (1·9-3·6) came from YLDs and 97·3% (96·4-98·1) from YLLs. Cancer was the fourth leading cause of death and tenth leading cause of DALYs in adolescents and young adults globally.InterpretationAdolescent and young adult cancers contributed substantially to the overall adolescent and young adult disease burden globally in 2019. These results provide new insights into the distribution and magnitude of the adolescent and young adult cancer burden around the world. With notable differences observed across SDI settings, these estimates can inform global and country-level cancer control efforts.FundingBill & Melinda Gates Foundation, American Lebanese Syrian Associated Charities, St Baldrick's Foundation, and the National Cancer Institute.
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- 2022
12. Mechanisms of cAMP compartmentation in cardiac myocytes: experimental and computational approaches to understanding
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Harvey, Robert D and Clancy, Colleen E
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Medical Physiology ,Biomedical and Clinical Sciences ,Cardiovascular ,Heart Disease ,Underpinning research ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Aetiology ,Cyclic AMP ,Excitation Contraction Coupling ,Myocytes ,Cardiac ,A kinase anchoring protein ,buffering ,cAMP ,cardiac myocyte ,compartmentation ,diffusion ,phosphodiesterase ,protein kinase A ,restricted space ,Biological Sciences ,Medical and Health Sciences ,Physiology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
The small diffusible second messenger 3',5'-cyclic adenosine monophosphate (cAMP) is found in virtually every cell in our bodies, where it mediates responses to a variety of different G protein coupled receptors (GPCRs). In the heart, cAMP plays a critical role in regulating many different aspects of cardiac myocyte function, including gene transcription, cell metabolism, and excitation-contraction coupling. Yet, not all GPCRs that stimulate cAMP production elicit the same responses. Subcellular compartmentation of cAMP is essential to explain how different receptors can utilize the same diffusible second messenger to elicit unique functional responses. However, the mechanisms contributing to this behaviour and its significance in producing physiological and pathological responses are incompletely understood. Mathematical modelling has played an essential role in gaining insight into these questions. This review discusses what we currently know about cAMP compartmentation in cardiac myocytes and questions that are yet to be answered.
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- 2021
13. Stop sending human remains to the Moon
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Harvey, Alvin D.
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- 2024
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14. A Longitudinal Investigation of the Effects of the COVID-19 Pandemic on the Mental Health of Individuals with Pre-existing Severe Mental Illnesses
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Pinkham, Amy E, Ackerman, Robert A, Depp, Colin A, Harvey, Philip D, and Moore, Raeanne C
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Clinical and Health Psychology ,Psychology ,Mental Health ,Brain Disorders ,Serious Mental Illness ,Schizophrenia ,2.4 Surveillance and distribution ,Aetiology ,Mental health ,Good Health and Well Being ,Adult ,COVID-19 ,Ecological Momentary Assessment ,Female ,Humans ,Male ,Middle Aged ,Mood Disorders ,Pandemics ,Psychotic Disorders ,Risk Factors ,Schizophrenic Psychology ,schizophrenia ,bipolar disorder ,mood ,psychotic symptoms ,well-being ,pandemic ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences ,Clinical and health psychology - Abstract
ObjectiveIndividuals with severe mental illnesses (SMI), including schizophrenia spectrum illnesses and affective disorders, may be at increased risk for negative mental health outcomes related to the COVID-19 pandemic. This study compared the severity of pre-pandemic symptoms and affective experiences to current symptoms to evaluate this possibility.Methods148 individuals with SMI (92 with schizophrenia spectrum illnesses and 56 with affective disorders) were recruited from ongoing ecological momentary assessment studies that sampled day-to-day experiences and symptom severity prior to the pandemic. Participants completed a one-time phone survey that queried these same experiences/symptoms between April and June of 2020.ResultsSeverity of affective experiences and psychotic symptoms remained stable across time, as did sleep duration. Well-being and the number of substances used increased during the early months of the pandemic. Increases in well-being were associated with being female and spending less time alone pre-pandemic. Patterns of stability/change did not differ according to diagnostic category.ConclusionsAt this relatively early stage, individuals with SMI are not reporting a worsening of symptoms or affective experiences and instead appear to be resilient in the face of the pandemic. Continued assessment is needed to determine whether this resilience will persist as the pandemic progresses.
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- 2020
15. Fos ensembles encode and shape stable spatial maps in the hippocampus
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Pettit, Noah L., Yap, Ee-Lynn, Greenberg, Michael E., and Harvey, Christopher D.
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- 2022
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16. The structures and functions of correlations in neural population codes
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Panzeri, Stefano, Moroni, Monica, Safaai, Houman, and Harvey, Christopher D.
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- 2022
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17. Systematic Review of Real-World Treatment Patterns of Oral Antipsychotics and Associated Economic Burden in Patients with Schizophrenia in the United States
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Martin, Amber, Bessonova, Leona, Hughes, Rachel, Doane, Michael J., O’Sullivan, Amy K., Snook, Kassandra, Cichewicz, Allie, Weiden, Peter J., and Harvey, Philip D.
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- 2022
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18. Information estimation using nonparametric copulas
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Safaai, Houman, Onken, Arno, Harvey, Christopher D., and Panzeri, Stefano
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Statistics - Methodology ,Computer Science - Information Theory ,Quantitative Biology - Neurons and Cognition ,Quantitative Biology - Quantitative Methods - Abstract
Estimation of mutual information between random variables has become crucial in a range of fields, from physics to neuroscience to finance. Estimating information accurately over a wide range of conditions relies on the development of flexible methods to describe statistical dependencies among variables, without imposing potentially invalid assumptions on the data. Such methods are needed in cases that lack prior knowledge of their statistical properties and that have limited sample numbers. Here we propose a powerful and generally applicable information estimator based on non-parametric copulas. This estimator, called the non-parametric copula-based estimator (NPC), is tailored to take into account detailed stochastic relationships in the data independently of the data's marginal distributions. The NPC estimator can be used both for continuous and discrete numerical variables and thus provides a single framework for the mutual information estimation of both continuous and discrete data. By extensive validation on artificial samples drawn from various statistical distributions, we found that the NPC estimator compares well against commonly used alternatives. Unlike methods not based on copulas, it allows an estimation of information that is robust to changes of the details of the marginal distributions. Unlike parametric copula methods, it remains accurate regardless of the precise form of the interactions between the variables. In addition, the NPC estimator had accurate information estimates even at low sample numbers, in comparison to alternative estimators. The NPC estimator therefore provides a good balance between general applicability to arbitrarily shaped statistical dependencies in the data and shows accurate and robust performance when working with small sample sizes., Comment: 17 pages, 13 figures
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- 2018
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19. Quantifying how much sensory information in a neural code is relevant for behavior
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Pica, Giuseppe, Piasini, Eugenio, Safaai, Houman, Runyan, Caroline A., Diamond, Mathew E., Fellin, Tommaso, Kayser, Christoph, Harvey, Christopher D., and Panzeri, Stefano
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Quantitative Biology - Neurons and Cognition ,Computer Science - Information Theory ,Physics - Data Analysis, Statistics and Probability - Abstract
Determining how much of the sensory information carried by a neural code contributes to behavioral performance is key to understand sensory function and neural information flow. However, there are as yet no analytical tools to compute this information that lies at the intersection between sensory coding and behavioral readout. Here we develop a novel measure, termed the information-theoretic intersection information $I_{II}(S;R;C)$, that quantifies how much of the sensory information carried by a neural response R is used for behavior during perceptual discrimination tasks. Building on the Partial Information Decomposition framework, we define $I_{II}(S;R;C)$ as the part of the mutual information between the stimulus S and the response R that also informs the consequent behavioral choice C. We compute $I_{II}(S;R;C)$ in the analysis of two experimental cortical datasets, to show how this measure can be used to compare quantitatively the contributions of spike timing and spike rates to task performance, and to identify brain areas or neural populations that specifically transform sensory information into choice.
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- 2017
20. The global burden of childhood and adolescent cancer in 2017: an analysis of the Global Burden of Disease Study 2017
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Collaborators, GBD 2017 Childhood Cancer, Force, Lisa M, Abdollahpour, Ibrahim, Advani, Shailesh M, Agius, Dominic, Ahmadian, Elham, Alahdab, Fares, Alam, Tahiya, Alebel, Animut, Alipour, Vahid, Allen, Christine A, Almasi-Hashiani, Amir, Alvarez, Elysia M, Amini, Saeed, Amoako, Yaw Ampem, Anber, Nahla Hamed, Arabloo, Jalal, Artaman, Al, Atique, Suleman, Awasthi, Ashish, Bagherzadeh, Mojtaba, Basaleem, Huda, Bekru, Eyasu Tamru, Bijani, Ali, Bogale, Kassawmar Angaw, Car, Mate, Carvalho, Félix, Castro, Clara, Catalá-López, Ferrán, Chu, Dinh-Toi, Costa, Vera M, Darwish, Amira Hamed, Demeke, Feleke Mekonnen, Demis, Asmamaw Bizuneh, Demoz, Gebre Teklemariam, Dharmaratne, Samath Dhamminda, Phuc, Huyen, Doan, Linh Phuong, Dubey, Manisha, Eftekhari, Aziz, El-Khatib, Ziad, Emamian, Mohammad Hassan, Farhangi, Mahdieh Abbasalizad, Fernandes, Eduarda, Fischer, Florian, Fard, Reza Fouladi, Friedrich, Paola M, Fukumoto, Takeshi, Gedefaw, Getnet Azeze, Ghashghaee, Ahmad, Gholamian, Asadollah, Haj-Mirzaian, Arvin, Haj-Mirzaian, Arya, Hamidi, Samer, Harvey, James D, Hassen, Hamid Yimam, Hay, Simon I, Hoang, Chi Linh, Hole, Michael K, Horita, Nobuyuki, Hosseini, Seyyed Nasrollah, Hosseinzadeh, Mehdi, Hsairi, Mohamed, Hudson, Melissa Maria, Innos, Kaire, Jalilian, Farzad, James, Spencer L, Kasaeian, Amir, Kassa, Tesfaye Dessale, Kassebaum, Nicholas J, Keiyoro, Peter Njenga, Khader, Yousef Saleh, Khubchandani, Jagdish, Kianipour, Neda, Kirby, Jeannette, Kisa, Adnan, Kisa, Sezer, Kocarnik, Jonathan M, Lauriola, Paolo, Lopez, Alan D, Mägi, Margit, Malik, Manzoor Ahmad, Manafi, Ali, Manafi, Navid, Mansournia, Mohammad Ali, Massenburg, Benjamin Ballard, Mehta, Varshil, Meles, Hagazi Gebre, Meretoja, Tuomo J, Mestrovic, Tomislav, Mir, Seyed Mostafa, Mirzaei-Alavijeh, Mehdi, Mohammad, Dara K, Darwesh, Aso Mohammad, Mezerji, Naser Mohammad Gholi, Mohammadibakhsh, Roghayeh, Mohammadoo-Khorasani, Milad, Mokdad, Ali H, Moodley, Yoshan, and Moosazadeh, Mahmood
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Pediatric ,Brain Disorders ,Cancer ,Prevention ,Burden of Illness ,2.4 Surveillance and distribution ,Aetiology ,Good Health and Well Being ,Adolescent ,Adult ,Age Distribution ,Cause of Death ,Child ,Child ,Preschool ,Disabled Persons ,Female ,Global Burden of Disease ,Global Health ,Humans ,Infant ,Infant ,Newborn ,Life Expectancy ,Male ,Neoplasms ,Risk Factors ,Socioeconomic Factors ,Young Adult ,GBD 2017 Childhood Cancer Collaborators ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
BackgroundAccurate childhood cancer burden data are crucial for resource planning and health policy prioritisation. Model-based estimates are necessary because cancer surveillance data are scarce or non-existent in many countries. Although global incidence and mortality estimates are available, there are no previous analyses of the global burden of childhood cancer represented in disability-adjusted life-years (DALYs).MethodsUsing the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2017 methodology, childhood (ages 0-19 years) cancer mortality was estimated by use of vital registration system data, verbal autopsy data, and population-based cancer registry incidence data, which were transformed to mortality estimates through modelled mortality-to-incidence ratios (MIRs). Childhood cancer incidence was estimated using the mortality estimates and corresponding MIRs. Prevalence estimates were calculated by using MIR to model survival and multiplied by disability weights to obtain years lived with disability (YLDs). Years of life lost (YLLs) were calculated by multiplying age-specific cancer deaths by the difference between the age of death and a reference life expectancy. DALYs were calculated as the sum of YLLs and YLDs. Final point estimates are reported with 95% uncertainty intervals.FindingsGlobally, in 2017, there were 11·5 million (95% uncertainty interval 10·6-12·3) DALYs due to childhood cancer, 97·3% (97·3-97·3) of which were attributable to YLLs and 2·7% (2·7-2·7) of which were attributable to YLDs. Childhood cancer was the sixth leading cause of total cancer burden globally and the ninth leading cause of childhood disease burden globally. 82·2% (82·1-82·2) of global childhood cancer DALYs occurred in low, low-middle, or middle Socio-demographic Index locations, whereas 50·3% (50·3-50·3) of adult cancer DALYs occurred in these same locations. Cancers that are uncategorised in the current GBD framework comprised 26·5% (26·5-26·5) of global childhood cancer DALYs.InterpretationThe GBD 2017 results call attention to the substantial burden of childhood cancer globally, which disproportionately affects populations in resource-limited settings. The use of DALY-based estimates is crucial in demonstrating that childhood cancer burden represents an important global cancer and child health concern.FundingBill & Melinda Gates Foundation, American Lebanese Syrian Associated Charities (ALSAC), and St. Baldrick's Foundation.
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- 2019
21. HNCcorr: A Novel Combinatorial Approach for Cell Identification in Calcium Imaging Movies
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Spaen, Quico, Asin-Acha, Roberto, Chettih, Selmaan N, Minderer, Matthias, Harvey, Christopher D, and Hochbaum, Dorit S
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BRII recipient: Hochbaum - Abstract
Calcium imaging is a key method in neuroscience for investigating patterns of neuronal activity in vivo. Still, existing algorithms to detect and extract activity signals from calcium-imaging movies have major shortcomings. We introduce the HNCcorr algorithm for cell identification in calcium-imaging datasets that addresses these shortcomings. HNCcorr relies on the combinatorial clustering problem HNC (Hochbaum’s Normalized Cut), which is similar to the Normalized Cut problem of Shi and Malik, a well known problem in image segmentation. HNC identifies cells as coherent clusters of pixels that are highly distinct from the remaining pixels. HNCcorr guarantees a globally optimal solution to the underlying optimization problem as well as minimal dependence on initialization techniques. HNCcorr also uses a new method, called “similarity squared”, for measuring similarity between pixels in calcium-imaging movies. The effectiveness of HNCcorr is demonstrated by its top performance on the Neurofinder cell identification benchmark. We believe HNCcorr is an important addition to the toolbox for analysis of calcium-imaging movies.
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- 2019
22. Hippocampal place codes are gated by behavioral engagement
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Pettit, Noah L., Yuan, Xintong C., and Harvey, Christopher D.
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- 2022
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23. A genome-wide association study of suicide attempts in the million veterans program identifies evidence of pan-ancestry and ancestry-specific risk loci
- Author
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Kimbrel, Nathan A., Ashley-Koch, Allison E., Qin, Xue J., Lindquist, Jennifer H., Garrett, Melanie E., Dennis, Michelle F., Hair, Lauren P., Huffman, Jennifer E., Jacobson, Daniel A., Madduri, Ravi K., Trafton, Jodie A., Coon, Hilary, Docherty, Anna R., Kang, Jooeun, Mullins, Niamh, Ruderfer, Douglas M., Harvey, Philip D., McMahon, Benjamin H., Oslin, David W., Hauser, Elizabeth R., Hauser, Michael A., and Beckham, Jean C.
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- 2022
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24. Photoreductive Electron Transfers in Nanoarchitectonics Organization Between a Diketopyrrolopyroleplatinum(II)-Containing Organometallic Polymer and Various Electron Acceptors
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Marineau-Plante, Gabriel, Qassab, Malak, Schlachter, Adrien, Nos, Mélodie, Durandetti, Muriel, Hardouin, Julie, Lemouchi, Cyprien, Le Pluart, Loïc, and Harvey, Pierre D.
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- 2022
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25. Cost savings of a primary care program for individuals recently released from prison: a propensity-matched study
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Harvey, Tyler D., Busch, Susan H., Lin, Hsiu-Ju, Aminawung, Jenerius A., Puglisi, Lisa, Shavit, Shira, and Wang, Emily A.
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- 2022
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26. Pre-neuromusculoskeletal injury Risk factor Evaluation and Post-neuromusculoskeletal injury Assessment for Return-to-duty/activity Enhancement (PREPARE) in military service members: a prospective, observational study protocol
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Butowicz, Courtney M., Hendershot, Brad D., Watson, Nora L., Brooks, Daniel I., Goss, Donald L., Whitehurst, Robert A., Harvey, Alisha D., Helton, Matthew S., Kardouni, Joseph R., Garber, Matthew B., and Mauntel, Timothy C.
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- 2022
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27. Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis
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Tengvall, Katarina, Sundström, Elisabeth, Wang, Chao, Bergvall, Kerstin, Wallerman, Ola, Pederson, Eric, Karlsson, Åsa, Harvey, Naomi D., Blott, Sarah C., Olby, Natasha, Olivry, Thierry, Brander, Gustaf, Meadows, Jennifer R. S., Roosje, Petra, Leeb, Tosso, Hedhammar, Åke, Andersson, Göran, and Lindblad-Toh, Kerstin
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- 2022
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28. Solitary Waves in Optical Fibers Governed by Higher Order Dispersion
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Kruglov, Vladimir I. and Harvey, John D.
- Subjects
Nonlinear Sciences - Pattern Formation and Solitons ,Mathematical Physics - Abstract
An exact solitary wave solution is presented for the nonlinear Schrodinger equation governing the propagation of pulses in optical fibers including the effects of second, third and fourth order dispersion. The stability of this soliton-like solution with sech2 shape is proven by the sign-definiteness of the operator and an integral of the Sobolev type. The main criteria governing the existence of such stable localized pulses propagating in optical fibers are also formulated. A unique feature of these soliton-like optical pulses propagating in a fiber with higher order dispersion is that their parameters satisfy efficient scaling relations. The main soliton solution term given by perturbation theory is also presented when absorption or gain is included in the nonlinear Schrodinger equation. We anticipate that this type of stable localized pulses could find practical applications in communications, slow-light devices and ultrafast lasers., Comment: 4 pages 3 Figures
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- 2017
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29. The Impact of Intellectual Disability and Autism Spectrum Disorder on Restraint and Seclusion in Pre-Adolescent Psychiatric Inpatients
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O'Donoghue, Elizabeth M., Pogge, David L., and Harvey, Philip D.
- Abstract
Introduction: Features of intellectual disability (ID) and/or autism spectrum disorder (ASD) may hinder responsiveness to interventions typically used during psychiatric hospitalization to manage severely disruptive behavior, and could increase the likelihood of experiencing restraint and/or seclusion (R/S). This study investigated the occurrence of R/S in psychiatrically hospitalized children rated by their treatment team as having ID and/or ASD and those who were rated as having neither. Methods: Pre-adolescents (N = 777; M = 9.71; SD = 2.71; Range 5-12) consecutively admitted to an acute psychiatric hospital during a one-year period were assigned a consensus DSM-5 diagnosis of ID (n = 295), ASD (n = 48), Both (n = 77), or Neither (n = 361). R/S occurrences were recorded in terms of their frequency and duration. Results: 52% of patients experienced at least one R/S while hospitalized. The modal number of R/S events for this sample was 0, and for children who experienced any R/S, the mode was 2. Comparisons (ID, ASD, Both, Neither) showed statistically significant differences (p <0.001) in R/S events. Children rated as meeting diagnostic criteria for ID (68%; M = 13.9), or Both ID and ASD (78%; M = 18.2), had elevated rates of R/S events compared to cases with Neither diagnosis (35%; M = 7.3). ASD alone (50%; M = 10.0) was not associated with an increase in R/S compared to cases with Neither diagnosis. Data on the duration of these events completely paralleled the frequency results. Conclusion: Children who met DSM-5 criteria for ID had a greater risk of experiencing R/S during psychiatric hospitalization. To reduce the occurrence of R/S, interventions must be refined and staff specially trained to address the complexities of treating children with ID.
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- 2020
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30. Cortical responses to touch reflect subcortical integration of LTMR signals
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Emanuel, Alan J., Lehnert, Brendan P., Panzeri, Stefano, Harvey, Christopher D., and Ginty, David D.
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- 2021
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31. Population genetics and geometric morphometrics of the freshwater snail Segmentina nitida reveal cryptic sympatric species of conservation value in Europe
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Hobbs, Christopher S., Vega, Rodrigo, Rahman, Farzana, Horsburgh, Gavin J., Dawson, Deborah A., and Harvey, Christopher D.
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- 2021
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32. Compartmentalized cAMP Signaling Associated With Lipid Raft and Non-raft Membrane Domains in Adult Ventricular Myocytes
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Agarwal, Shailesh R, Gratwohl, Jackson, Cozad, Mia, Yang, Pei-Chi, Clancy, Colleen E, and Harvey, Robert D
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,2.1 Biological and endogenous factors ,Aetiology ,cAMP ,compartmentation ,membrane microdomains ,lipid rafts ,caveolae ,Pharmacology and pharmaceutical sciences - Abstract
Aim: Confining cAMP production to discrete subcellular locations makes it possible for this ubiquitous second messenger to elicit unique functional responses. Yet, factors that determine how and where the production of this diffusible signaling molecule occurs are incompletely understood. The fluid mosaic model originally proposed that signal transduction occurs through random interactions between proteins diffusing freely throughout the plasma membrane. However, it is now known that the movement of membrane proteins is restricted, suggesting that the plasma membrane is segregated into distinct microdomains where different signaling proteins can be concentrated. In this study, we examined what role lipid raft and non-raft membrane domains play in compartmentation of cAMP signaling in adult ventricular myocytes. Methods and Results: The freely diffusible fluorescence resonance energy transfer-based biosensor Epac2-camps was used to measure global cytosolic cAMP responses, while versions of the probe targeted to lipid raft (Epac2-MyrPalm) and non-raft (Epac2-CAAX) domains were used to monitor local cAMP production near the plasma membrane. We found that β-adrenergic receptors, which are expressed in lipid raft and non-raft domains, produce cAMP responses near the plasma membrane that are distinctly different from those produced by E-type prostaglandin receptors, which are expressed exclusively in non-raft domains. We also found that there are differences in basal cAMP levels associated with lipid raft and non-raft domains, and that this can be explained by differences in basal adenylyl cyclase activity associated with each of these membrane environments. In addition, we found evidence that phosphodiesterases 2, 3, and 4 work together in regulating cAMP activity associated with both lipid raft and non-raft domains, while phosphodiesterase 3 plays a more prominent role in the bulk cytoplasmic compartment. Conclusion: These results suggest that different membrane domains contribute to the formation of distinct pools of cAMP under basal conditions as well as following receptor stimulation in adult ventricular myocytes.
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- 2018
33. Transcriptome-wide association study of post-trauma symptom trajectories identified GRIN3B as a potential biomarker for PTSD development
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Lori, Adriana, Schultebraucks, Katharina, Galatzer-Levy, Isaac, Daskalakis, Nikolaos P., Katrinli, Seyma, Smith, Alicia K., Myers, Amanda J., Richholt, Ryan, Huentelman, Matthew, Guffanti, Guia, Wuchty, Stefan, Gould, Felicia, Harvey, Philip D., Nemeroff, Charles B., Jovanovic, Tanja, Gerasimov, Ekaterina S., Maples-Keller, Jessica L., Stevens, Jennifer S., Michopoulos, Vasiliki, Rothbaum, Barbara O., Wingo, Aliza P., and Ressler, Kerry J.
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- 2021
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34. Mode-locked Yb-doped fiber laser emitting broadband pulses at ultra-low repetition rates
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Bowen, Patrick, Erkintalo, Miro, Provo, Richard, Harvey, John D., and Broderick, Neil G. R.
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Physics - Optics - Abstract
We report on an environmentally stable, Yb-doped, all-normal dispersion, mode-locked fibre laser that is capable of creating broadband pulses with ultra-low repetition rates. Specifically, through careful positioning of fibre sections in an all-PM-fibre cavity mode-locked with a nonlinear amplifying loop mirror, we achieve stable pulse trains with repetition rates as low as 506 kHz. The pulses have several nanojules of energy and are compressible down to ultrashort (< 500 fs) durations., Comment: 5 pages, 4 figures, optics letters submission
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- 2016
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35. Recurrent Network Models Of Sequence Generation And Memory
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Rajan, Kanaka, Harvey, Christopher D, and Tank, David W
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Quantitative Biology - Neurons and Cognition ,Condensed Matter - Disordered Systems and Neural Networks ,Physics - Biological Physics - Abstract
Sequential activation of neurons is a common feature of network activity during a variety of behaviors, including working memory and decision making. Previous network models for sequences and memory emphasized specialized architectures in which a principled mechanism is pre-wired into their connectivity. Here we demonstrate that, starting from random connectivity and modifying a small fraction of connections, a largely disordered recur- rent network can produce sequences and implement working memory efficiently. We use this process, called Partial In-Network Training (PINning), to model and match cellular resolution imaging data from the posterior parietal cortex during a virtual memory- guided two-alternative forced-choice task. Analysis of the connectivity reveals that sequences propagate by the cooperation between recurrent synaptic interactions and external inputs, rather than through feedforward or asymmetric connections. Together our results suggest that neural sequences may emerge through learning from largely unstructured network architectures., Comment: 60 pages, 6 figures
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- 2016
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36. Exploratory analysis of normative performance on the UCSD Performance‐Based Skills Assessment‐Brief
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Vella, Lea, Patterson, Thomas L, Harvey, Philip D, McClure, Margaret McNamara, Mausbach, Brent T, Taylor, Michael J, and Twamley, Elizabeth W
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Psychology ,Quality Education ,Activities of Daily Living ,Adult ,Aged ,Aged ,80 and over ,Communication ,Female ,Humans ,Male ,Middle Aged ,Neuropsychological Tests ,Social Skills ,Young Adult ,Functional capacity ,Functional skills ,Communication ability ,Financial ability ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences ,Clinical and health psychology - Abstract
The UCSD Performance-Based Skills Assessment (UPSA) is a performance-based measure of functional capacity. The brief, two-domain (finance and communication ability) version of the assessment (UPSA-B) is now widely used in both clinical research and treatment trials. To date, research has not examined possible demographic-UPSA-B relationships within a non-psychiatric population. We aimed to produce and describe preliminary normative scores for the UPSA-B over a full range of ages and educational attainment. The finance and communication subscales of the UPSA were administered to 190 healthy participants in the context of three separate studies. These data were combined to examine the effects of age, sex, and educational attainment on the UPSA-B domain and total scores. Fractional polynomial regression was used to compute demographically-corrected T-scores for the UPSA-B total score, and percentile rank conversion was used for the two subscales. Age and education both had significant non-linear effects on the UPSA-B total score. The finance subscale was significantly related to both gender and years of education, whereas the communication subscale was not significantly related to any of the demographic characteristics. Demographically corrected T-scores and percentile ranks for UPSA-B scores are now available for use in clinical research.
- Published
- 2017
37. Experimental test of the mechanism underlying sexual segregation at communal roosts of harvestmen ( Prionostemma spp.)
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Harvey, Brigit D, Vanni, Kaylee N, Shier, Debra M, and Grether, Gregory F
- Published
- 2017
38. A multiscale computational modelling approach predicts mechanisms of female sex risk in the setting of arousal‐induced arrhythmias
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Yang, Pei‐Chi, Perissinotti, Laura L, López‐Redondo, Fernando, Wang, Yibo, DeMarco, Kevin R, Jeng, Mao‐Tsuen, Vorobyov, Igor, Harvey, Robert D, Kurokawa, Junko, Noskov, Sergei Y, and Clancy, Colleen E
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Medical Physiology ,Biomedical and Clinical Sciences ,Neurosciences ,Heart Disease ,Cardiovascular ,2.1 Biological and endogenous factors ,Aetiology ,Adrenergic beta-Agonists ,Animals ,Anti-Arrhythmia Agents ,Arousal ,Arrhythmias ,Cardiac ,Estradiol ,Ether-A-Go-Go Potassium Channels ,Female ,Guinea Pigs ,Isoproterenol ,Male ,Models ,Biological ,Molecular Docking Simulation ,Myocytes ,Cardiac ,Phenethylamines ,Sex Characteristics ,Sulfonamides ,arrhythmias ,computational model ,dofetilide ,hERG mutation ,long-QT ,sex-differences ,TdP ,Biological Sciences ,Medical and Health Sciences ,Physiology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Key pointsThis study represents a first step toward predicting mechanisms of sex-based arrhythmias that may lead to important developments in risk stratification and may inform future drug design and screening. We undertook simulations to reveal the conditions (i.e. pacing, drugs, sympathetic stimulation) required for triggering and sustaining reentrant arrhythmias. Using the recently solved cryo-EM structure for the Eag-family channel as a template, we revealed potential interactions of oestrogen with the pore loop hERG mutation (G604S). Molecular models suggest that oestrogen and dofetilide blockade can concur simultaneously in the hERG channel pore.AbstractFemale sex is a risk factor for inherited and acquired long-QT associated torsade de pointes (TdP) arrhythmias, and sympathetic discharge is a major factor in triggering TdP in female long-QT syndrome patients. We used a combined experimental and computational approach to predict 'the perfect storm' of hormone concentration, IKr block and sympathetic stimulation that induces arrhythmia in females with inherited and acquired long-QT. More specifically, we developed mathematical models of acquired and inherited long-QT syndrome in male and female ventricular human myocytes by combining effects of a hormone and a hERG blocker, dofetilide, or hERG mutations. These 'male' and 'female' model myocytes and tissues then were used to predict how various sex-based differences underlie arrhythmia risk in the setting of acute sympathetic nervous system discharge. The model predicted increased risk for arrhythmia in females when acute sympathetic nervous system discharge was applied in the settings of both inherited and acquired long-QT syndrome. Females were predicted to have protection from arrhythmia induction when progesterone is high. Males were protected by the presence of testosterone. Structural modelling points towards two plausible and distinct mechanisms of oestrogen action enhancing torsadogenic effects: oestradiol interaction with hERG mutations in the pore loop containing G604 or with common TdP-related blockers in the intra-cavity binding site. Our study presents findings that constitute the first evidence linking structure to function mechanisms underlying female dominance of arousal-induced arrhythmias.
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- 2017
39. Depression in Schizophrenia: Associations With Cognition, Functional Capacity, Everyday Functioning, and Self-Assessment.
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Harvey, Philip D, Twamley, Elizabeth W, Pinkham, Amy E, Depp, Colin A, and Patterson, Thomas L
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Schizophrenia ,Serious Mental Illness ,Mental Health ,Neurosciences ,Brain Disorders ,Behavioral and Social Science ,Depression ,Clinical Research ,Mental health ,Activities of Daily Living ,Adult ,Cognition ,Cohort Studies ,Female ,Humans ,Interpersonal Relations ,Male ,Middle Aged ,Self-Assessment ,schizophrenia ,depression ,self-assessment ,introspective accuracy ,disability ,neurocognition ,functional capacity ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
Depressed mood has a complex relationship with self-evaluation of personal competence in multiple populations. The absence of depression may be associated with overestimation of abilities, while mild depression seems to lead to accurate self-assessment. Significant depression may lead to underestimation of functioning. In this study, we expand on our previous work by directly comparing the association between different levels of depression, everyday functioning, cognitive and functional capacity performance, and self-assessment of everyday functioning in a large (n = 406) sample of outpatients with schizophrenia. Participants with very low self-reported depression overestimated their everyday functioning compared with informant reports. Higher levels of depression were associated with more accurate self-assessment, but no subgroup of patients underestimated their functioning. Depressive symptom severity was associated with poorer informant-rated social functioning, but there were no differences in vocational functioning, everyday activities, cognitive performance, and functional capacity associated with the severity of self-reported depression. There was minimal evidence of impact of depression on most aspects of everyday functioning and objective test performance and a substantial relationship between depression and accuracy of self-assessment.
- Published
- 2017
40. Recent Advances in Nanoscale Metal–Organic Frameworks Towards Cancer Cell Cytotoxicity: An Overview
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Harvey, Pierre D. and Plé, Jessica
- Published
- 2021
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41. Correlations enhance the behavioral readout of neural population activity in association cortex
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Valente, Martina, Pica, Giuseppe, Bondanelli, Giulio, Moroni, Monica, Runyan, Caroline A., Morcos, Ari S., Harvey, Christopher D., and Panzeri, Stefano
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- 2021
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42. Integration of peripheral transcriptomics, genomics, and interactomics following trauma identifies causal genes for symptoms of post-traumatic stress and major depression
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Wuchty, Stefan, Myers, Amanda J., Ramirez-Restrepo, Manuel, Huentelman, Matthew, Richolt, Ryan, Gould, Felicia, Harvey, Philip. D., Michopolous, Vasiliki, Steven, Jennifer S., Wingo, Aliza P., Lori, Adriana, Maples-Keller, Jessica L., Rothbaum, Alex O., Jovanovic, Tanja, Rothbaum, Barbara O., Ressler, Kerry J., and Nemeroff, Charles B.
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- 2021
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43. Selective Chirality-Driven Photopolymerization of Diacetylene Crystals.
- Author
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Baillargeon, Pierre, Boivin, Léo, Vaillancourt, Dorah, Bélanger, Marilie, Rahem, Tarik, Fortin, Daniel, and Harvey, Pierre D.
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- 2024
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44. Novel measures of cognition and function for the AD spectrum in the Novel Measures for Alzheimer's Disease Prevention Trials (NoMAD) project: Psychometric properties, convergent validation, and contrasts with established measures.
- Author
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Kim, Hyun, Lee, Seonjoo, Levine, Alina, Huber, Benjamin, Andrews, Howard, Kerner, Nancy A., Cohen, Daniel, Carlson, Scott, Bell, Sophie A., Rivera, Andres M., Gordon, Marc L., Simoes, Sabrina, Devanand, Davangere. P., Brickman, Adam M., Schneider, Lon S., Harvey, Philip D., and Goldberg, Terry E.
- Abstract
INTRODUCTION: This study derived composite scores for two novel cognitive measures, the No Practice Effect (NPE) battery and the Miami Computerized Functional Skills Assessment and Training system for use in early‐stage Alzheimer's disease (AD) clinical trials. Their psychometric properties and associations with AD risk markers were compared to those of well‐established measures. METHODS: For 291 older adults with healthy cognition or early mild cognitive impairment, Exploratory factor analyses were used to identify the factor structure of the NPE. Factor and total scores were examined for their psychometric properties and associations with AD risk biomarkers. RESULTS: Composite scores from the novel cognitive and functional measures demonstrated better psychometric properties (distribution and test‐retest reliability) and stronger associations with AD‐related demographic, genetic, and brain risk markers than well‐established measures, DISCUSSION: These novel measures have potential for use as primary cognitive and functional outcomes in early‐stage AD clinical trials. Highlights: Well‐established cognitive tests may not accurately detect subtle cognitive changes.No Practice Effect (NPE) and Computerized Functional Skills Assessment and Training are novel measures designed to have improved psychometric properties.NPE had Executive Function, Cognitive Control/Speed, and Episodic Memory domains.Novel measures had better psychometric properties compared to established measures.Significant associations with Alzheimer's disease biomarkers were found with novel measures. [ABSTRACT FROM AUTHOR]
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- 2024
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45. Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network
- Author
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Yap, Ee-Lynn, Pettit, Noah L., Davis, Christopher P., Nagy, M. Aurel, Harmin, David A., Golden, Emily, Dagliyan, Onur, Lin, Cindy, Rudolph, Stephanie, Sharma, Nikhil, Griffith, Eric C., Harvey, Christopher D., and Greenberg, Michael E.
- Published
- 2021
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46. Harnessing nanotechnology to expand the toolbox of chemical biology
- Author
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Williams, Ryan M., Chen, Shi, Langenbacher, Rachel E., Galassi, Thomas V., Harvey, Jackson D., Jena, Prakrit V., Budhathoki-Uprety, Januka, Luo, Minkui, and Heller, Daniel A.
- Published
- 2021
- Full Text
- View/download PDF
47. Functional Capacity Assessed by the Map Task in Individuals at Clinical High-Risk for Psychosis.
- Author
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McLaughlin, Danielle, Carrión, Ricardo E, Auther, Andrea M, Olvet, Doreen M, Addington, Jean, Bearden, Carrie E, Cadenhead, Kristin S, Cannon, Tyrone D, Heinssen, Robert K, Mathalon, Daniel H, McGlashan, Thomas H, Perkins, Diana O, Seidman, Larry J, Tsuang, Ming T, Walker, Elaine F, Woods, Scott W, Goldberg, Terry E, Harvey, Philip D, and Cornblatt, Barbara A
- Subjects
Humans ,Disease Progression ,Risk ,Psychotic Disorders ,Neuropsychological Tests ,Adolescent ,Adult ,Female ,Male ,Young Adult ,Executive Function ,Prodromal Symptoms ,CHR ,NAPLS ,disability ,prediction ,prodromal ,role functioning ,Schizophrenia ,Neurosciences ,Clinical Research ,Clinical Trials and Supportive Activities ,Mental Health ,Pediatric ,Serious Mental Illness ,Prevention ,Brain Disorders ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
ObjectivesRecent studies have recognized that signs of functional disability in schizophrenia are evident in early phases of the disorder, and, as a result, can potentially serve as vulnerability markers of future illness. However, functional measures in the psychosis prodrome have focused exclusively on real-world achievements, rather than on the skills required to carry-out a particular real-world function (ie, capacity). Despite growing evidence that diminished capacity is critical to the etiology of the established disorder, virtually no attention has been directed towards assessing functional capacity in the pre-illness stages. In the present study, we introduce the Map task, a measure to assess functional capacity in adolescent and young-adult high-risk populations.MethodsThe Map task was administered to 609 subjects at Clinical High-Risk (CHR) for psychosis and 242 Healthy Controls (HCs) participating in the North American Prodrome Longitudinal Study (NAPLS2). Subjects were required to efficiently complete a set of specified errands in a fictional town.ResultsCHR participants showed large impairments across major indices of the Map task, relative to the HCs. Most importantly, poor performance on the Map task significantly predicted conversion to psychosis, even after adjusting for age, IQ, clinical state, and other potential confounders.ConclusionsTo the best of our knowledge, the Map task is one of the first laboratory-based measures to assess functional capacity in high-risk populations. Functional capacity deficits prior to the onset of psychosis may reflect a basic mechanism that underlies risk for psychosis. Early intervention targeting this domain may help to offset risk and independently improve long-term outcome.
- Published
- 2016
48. Validation of a Computerized test of Functional Capacity
- Author
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Keefe, Richard SE, Davis, Vicki G, Atkins, Alexandra S, Vaughan, Adam, Patterson, Tom, Narasimhan, Meera, and Harvey, Philip D
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Rehabilitation ,Mental Health ,Schizophrenia ,Clinical Research ,Brain Disorders ,Detection ,screening and diagnosis ,4.2 Evaluation of markers and technologies ,Mental health ,Adult ,Diagnosis ,Computer-Assisted ,Female ,Follow-Up Studies ,Humans ,Interview ,Psychological ,Male ,Psychiatric Status Rating Scales ,Psychological Tests ,Reproducibility of Results ,Sensitivity and Specificity ,User-Computer Interface ,Functional capacity ,Cognition ,Virtual reality ,Computerized testing ,Everyday functioning ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences - Abstract
Regulatory guidance for schizophrenia cognition clinical trials requires that the assessment of cognitive change is accompanied by a functionally meaningful endpoint. However, currently available measures are challenged by resistance to change, psychometric weaknesses, and for interview-based assessments, dependence upon the presence of an informant. The aims of the current study were to: 1) assess the validity, sensitivity, and reliability of the Virtual Reality Functional Capacity Assessment Tool (VRFCAT) as a measure of functional capacity; 2) determine the association between performance on the VRFCAT and performance on the MATRICS Consensus Cognitive Battery (MCCB); and 3) compare the metrics of the VRFCAT with the UCSD Performance-based Skills Assessment (UPSA). 167 patients with schizophrenia and 166 healthy controls completed the VRFCAT, UPSA, and the MCCB at baseline. The VRFCAT and UPSA were completed again at follow-up. The VRFCAT, MCCB, and UPSA were very sensitive to impairment in schizophrenia (d=1.16 to 1.22). High test-retest reliability was demonstrated for VRFCAT total completion time and the UPSA total score in patients (ICC=0.81 and 0.78, respectively). The UPSA demonstrated significant practice effects in patients (d=0.35), while the VRFCAT did not (d=-0.04). VRFCAT total completion time was correlated with both UPSA (r=-0.56, p
- Published
- 2016
49. A Computational Modeling and Simulation Approach to Investigate Mechanisms of Subcellular cAMP Compartmentation.
- Author
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Yang, Pei-Chi, Boras, Britton W, Jeng, Mao-Tsuen, Docken, Steffen S, Lewis, Timothy J, McCulloch, Andrew D, Harvey, Robert D, and Clancy, Colleen E
- Subjects
Cells ,Cultured ,Intracellular Space ,Myocytes ,Cardiac ,Animals ,Mice ,Phosphoric Diester Hydrolases ,Cyclic AMP ,Computational Biology ,Signal Transduction ,Computer Simulation ,Cells ,Cultured ,Myocytes ,Cardiac ,Mathematical Sciences ,Biological Sciences ,Information and Computing Sciences ,Bioinformatics - Abstract
Subcellular compartmentation of the ubiquitous second messenger cAMP has been widely proposed as a mechanism to explain unique receptor-dependent functional responses. How exactly compartmentation is achieved, however, has remained a mystery for more than 40 years. In this study, we developed computational and mathematical models to represent a subcellular sarcomeric space in a cardiac myocyte with varying detail. We then used these models to predict the contributions of various mechanisms that establish subcellular cAMP microdomains. We used the models to test the hypothesis that phosphodiesterases act as functional barriers to diffusion, creating discrete cAMP signaling domains. We also used the models to predict the effect of a range of experimentally measured diffusion rates on cAMP compartmentation. Finally, we modeled the anatomical structures in a cardiac myocyte diad, to predict the effects of anatomical diffusion barriers on cAMP compartmentation. When we incorporated experimentally informed model parameters to reconstruct an in silico subcellular sarcomeric space with spatially distinct cAMP production sites linked to caveloar domains, the models predict that under realistic conditions phosphodiesterases alone were insufficient to generate significant cAMP gradients. This prediction persisted even when combined with slow cAMP diffusion. When we additionally considered the effects of anatomic barriers to diffusion that are expected in the cardiac myocyte dyadic space, cAMP compartmentation did occur, but only when diffusion was slow. Our model simulations suggest that additional mechanisms likely contribute to cAMP gradients occurring in submicroscopic domains. The difference between the physiological and pathological effects resulting from the production of cAMP may be a function of appropriate compartmentation of cAMP signaling. Therefore, understanding the contribution of factors that are responsible for coordinating the spatial and temporal distribution of cAMP at the subcellular level could be important for developing new strategies for the prevention or treatment of unfavorable responses associated with different disease states.
- Published
- 2016
50. Neurocognitive insight and objective cognitive functioning in schizophrenia
- Author
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Burton, Cynthia Z, Harvey, Philip D, Patterson, Thomas L, and Twamley, Elizabeth W
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Schizophrenia ,Mental Health ,Neurosciences ,Depression ,Brain Disorders ,Behavioral and Social Science ,Serious Mental Illness ,Clinical Research ,Basic Behavioral and Social Science ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Adult ,Cognition Disorders ,Female ,Humans ,Male ,Memory Disorders ,Middle Aged ,Neuropsychological Tests ,Recognition ,Psychology ,Schizophrenic Psychology ,Cognition ,Awareness ,Psychosis ,Functional capacity ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences - Abstract
Neurocognitive impairment is a core component of schizophrenia affecting everyday functioning; the extent to which individuals with schizophrenia show awareness of neurocognitive impairment (neurocognitive insight) is unclear. This study investigated neurocognitive insight and examined the cross-sectional relationships between neurocognitive insight and objective neurocognition and functional capacity performance in a large outpatient sample. 214 participants with schizophrenia-spectrum disorders completed measures of neurocognition, functional capacity, and self-reported neurocognitive problems. Latent profile analysis classified participants with regard to neuropsychological performance and self-report of neurocognitive problems. The resulting classes were then compared on executive functioning performance, functional capacity performance, and psychiatric symptom severity. More than three quarters of the sample demonstrated objective neurocognitive impairment (global deficit score≥0.50). Among the participants with neurocognitive impairment, 54% were classified as having "impaired" neurocognitive insight (i.e., reporting few neurocognitive problems despite having objective neurocognitive impairment). Participants with impaired vs. intact neurocognitive insight did not differ on executive functioning measures or measures of functional capacity or negative symptom severity, but those with intact neurocognitive insight reported higher levels of positive and depressive symptoms. A substantial portion of individuals with schizophrenia and objectively measured neurocognitive dysfunction appear unaware of their deficits. Patient self-report of neurocognitive problems, therefore, is not likely to reliably assess neurocognition. Difficulty self-identifying neurocognitive impairment appears to be unrelated to executive functioning, negative symptoms, and functional capacity. For those with intact neurocognitive insight, improving depressive and psychotic symptoms may be a valuable target to reduce illness burden.
- Published
- 2016
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