1,523 results on '"Harcourt P"'
Search Results
2. On critical genealogy
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Harcourt, Bernard E.
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- 2024
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3. Half a century of citizen science tag-recapture data reveals stock delineation and cross-jurisdictional connectivity of an iconic pelagic fish
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Goddard, Belinda K., Guillemin, Tristan A., Schilling, Hayden T., Hughes, Julian M., Brodie, Stephanie, Green, Corey P., Harcourt, Robert, Huveneers, Charlie, Ierodiaconou, Daniel, Suthers, Iain M., Taylor, Matthew D., Tracey, Sean R., Camilieri-Asch, Victoria, Clarke, Thomas M., Dwyer, Ross G., Hilbert, Clay, Holdsworth, John, Mitchell, Jonathan, Pepperell, Julian, Simpson, Emma, Udyawer, Vinay, and Jaine, Fabrice R. A.
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- 2024
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4. 3D terrain mapping and filtering from coarse resolution data cubes extracted from real-aperture 94 GHz radar
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Harcourt, William D., Macfarlane, David G., and Robertson, Duncan A.
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Electrical Engineering and Systems Science - Signal Processing - Abstract
Accurate, high-resolution 3D mapping of environmental terrain is critical in a range of disciplines. In this study, we develop a new technique, called the PCFilt-94 algorithm, to extract 3D point clouds from coarse resolution millimetre-wave radar data cubes and quantify their associated uncertainties. A technique to non-coherently average neighbouring waveforms surrounding each AVTIS2 range profile was developed in order to reduce speckle and was found to reduce point cloud uncertainty by 13% at long range and 20% at short range. Further, a Voronoi-based point cloud outlier removal algorithm was implemented which iteratively removes outliers in a point cloud until the process converges to the removal of 0 points. Taken together, the new processing methodology produces a stable point cloud, which means that: 1) it is repeatable even when using different point cloud extraction and filtering parameter values during pre-processing, and 2) is less sensitive to over-filtering through the point cloud processing workflow. Using an optimal number of Ground Control Points (GCPs) for georeferencing, which was determined to be 3 at close range (<1.5 km) and 5 at long range (>3 km), point cloud uncertainty was estimated to be approximately 1.5 m at 1.5 km to 3 m at 3 km and followed a Lorentzian distribution. These uncertainties are smaller than those reported for other close-range radar systems used for terrain mapping. The results of this study should be used as a benchmark for future application of millimetre-wave radar systems for 3D terrain mapping., Comment: 19 pages, 22 figures, submitted to IEEE Transactions on Geoscience and Remote Sensing
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- 2023
5. Intraspecific trait variation modulates the temperature effect on elemental quotas and stoichiometry in marine Synechococcus.
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Harcourt, Renne, Garcia, Nathan, and Martiny, Adam
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Synechococcus ,Temperature ,Phytoplankton ,Nutrients ,Carbon ,Nitrogen - Abstract
Diverse phytoplankton modulate the coupling between the ocean carbon and nutrient cycles through life-history traits such as cell size, elemental quotas, and ratios. Biodiversity is mostly considered at broad functional levels, but major phytoplankton lineages are themselves highly diverse. As an example, Synechococcus is found in nearly all ocean regions, and we demonstrate contains extensive intraspecific variation. Here, we grew four closely related Synechococcus isolates in serially transferred cultures across a range of temperatures (16-25°C) to quantify for the relative role of intraspecific trait variation vs. environmental change. We report differences in cell size (p
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- 2024
6. Exploiting human immune repertoire transgenic mice for protective monoclonal antibodies against antimicrobial resistant Acinetobacter baumannii
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Stephen Baker, Aishwarya Krishna, Sophie Higham, Plamena Naydenova, Siobhan O’Leary, Josefin Bartholdson Scott, Katherine Harcourt, Sally Forrest, David Goulding, To Nguyen Thi Nguyen, Nguyen Duc Toan, Elizaveta Alekseeva, Qingqing Zhou, Ilaria Andreozzi, Barbara Sobotic, Hannah Craig, Vivian Wong, Nichola Forrest-Owen, Dana Moreno Sanchez, Claire Pearce, Leah Roberts, Simon Watson, Simon Clare, Mili Estee Torok, Gordon Dougan, Paul Kellam, John S. Tregoning, and Stephen T. Reece
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Science - Abstract
Abstract The use of monoclonal antibodies for the control of drug resistant nosocomial bacteria may alleviate a reliance on broad spectrum antimicrobials for treatment of infection. We identify monoclonal antibodies that may prevent infection caused by carbapenem resistant Acinetobacter baumannii. We use human immune repertoire mice (Kymouse platform mice) as a surrogate for human B cell interrogation to establish an unbiased strategy to probe the antibody-accessible target landscape of clinically relevant A. baumannii. After immunisation of the Kymouse platform mice with A. baumannii derived outer membrane vesicles (OMV) we identify 297 antibodies and analyse 26 of these for functional potential. These antibodies target lipooligosaccharide (OCL1), the Oxa-23 protein, and the KL49 capsular polysaccharide. We identify a single monoclonal antibody (mAb1416) recognising KL49 capsular polysaccharide to demonstrate prophylactic in vivo protection against a carbapenem resistant A. baumannii lineage associated with neonatal sepsis mortality in Asia. Our end-to-end approach identifies functional monoclonal antibodies with prophylactic potential against major lineages of drug resistant bacteria accounting for phylogenetic diversity and clinical relevance without existing knowledge of a specific target antigen. Such an approach might be scaled for a additional clinically important bacterial pathogens in the post-antimicrobial era.
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- 2024
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7. Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis
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Stark, K. A., Rinaldi, G., Costain, A., Clare, S., Tolley, C., Almeida, A., McCarthy, C., Harcourt, K., Brandt, C., Lawley, T. D., Berriman, M., MacDonald, A. S., Forde-Thomas, J. E., Hulme, B. J., Hoffmann, K. F., Cantacessi, C., and Cortés, A.
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- 2024
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8. From little things big things grow: enhancement of an acoustic telemetry network to monitor broad-scale movements of marine species along Australia’s east coast
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Barnett, Adam, Jaine, Fabrice R. A., Bierwagen, Stacy L., Lubitz, Nicolas, Abrantes, Kátya, Heupel, Michelle R., Harcourt, Rob, Huveneers, Charlie, Dwyer, Ross G., Udyawer, Vinay, Simpfendorfer, Colin A., Miller, Ingo B., Scott-Holland, Tracey, Kilpatrick, Carley S., Williams, Samuel M, Smith, Daniel, Dudgeon, Christine L., Hoey, Andrew S., Fitzpatrick, Richard, Osborne, Felicity E., Smoothey, Amy F., Butcher, Paul A., Sheaves, Marcus, Fisher, Eric E., Svaikauskas, Mark, Ellis, Megan, Kanno, Shiori, Cresswell, Benjamin J., Flint, Nicole, Armstrong, Asia O., Townsend, Kathy A., Mitchell, Jonathan D., Campbell, Matthew, Peddemors, Victor M., Gustafson, Johan A., and Currey-Randall, Leanne M.
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- 2024
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9. Niche partitioning and individual specialisation in resources and space use of sympatric fur seals at their range margin
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Salton, Marcus, Raoult, Vincent, Jonsen, Ian, and Harcourt, Robert
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- 2024
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10. Bring Your Own Device (BYOD): Organizational Control and Justice Perspectives
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Lam, Helen, Beckman, Terry, Harcourt, Mark, and Shanmugam, Sandra
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- 2024
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11. Prospective randomized trial comparing relapse rates in dogs with steroid‐responsive meningitis‐arteritis treated with a 6‐week or 6‐month prednisolone protocol
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Jeremy H. Rose, Colin J. Driver, Lorna Arrol, Thomas J. A. Cardy, Joana Tabanez, Anna Tauro, Ricardo Fernandes, Imogen Schofield, Sophie Adamantos, Nicolas Granger, and Thomas. R. Harcourt‐Brown
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aseptic meningitis ,immune‐mediated ,immunosuppression ,neck pain ,necrotising vasculitis ,PUO ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Traditionally, 6‐month courses of prednisolone are used to treat steroid‐responsive meningitis‐arteritis (SRMA), but this medication is associated with adverse effects that can lead to poor quality of life. Hypothesis/Objectives Resolution of clinical signs and rate of relapse of SRMA would not be significantly different between a 6‐month prednisolone protocol and a 6‐week protocol. Animals Forty‐four hospital cases from multiple referral centers in the United Kingdom (2015‐2019). Twenty of 44 were treated with the 6‐month protocol and 24/44 with the 6‐week protocol. Methods Prospective, randomized trial with 12‐month follow‐up. The same prednisolone protocol reinitiated in the event of relapse. Analysis of relapses with binary logistic and Poisson regression modeling. Results All cases responded to their treatment protocol. Relapses occurred in 6/20 (30%) of the 6‐month protocol and 9/24 (38%) of the 6‐week protocol. There was no statistical difference in the incidence risk of at least 1 relapse between the 2 groups (odds ratio = 1.40; 95% confidence interval [CI], 0.40‐4.96, P = 0.60). Among the 15 dogs that relapsed, 10/15 (67%) relapsed once, 3/15 (20%) relapsed twice, and 2/15 (13%) relapsed 3 times. No statistical difference was detected in the incidence rate ratio (IRR) of total relapse events between the 2 groups (IRR = 1.46; 95% CI, 0.61‐3.48; P = 0.40). Conclusions and Clinical Importance “Short” 6‐week prednisolone protocols could be used to treat SRMA, thereby presumably reducing the duration and severity of prednisolone's adverse effects.
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- 2024
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12. Gut microbiota and immune profiling of microbiota-humanised versus wildtype mouse models of hepatointestinal schistosomiasis
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K. A. Stark, G. Rinaldi, A. Costain, S. Clare, C. Tolley, A. Almeida, C. McCarthy, K. Harcourt, C. Brandt, T. D. Lawley, M. Berriman, A. S. MacDonald, J. E. Forde-Thomas, B. J. Hulme, K. F. Hoffmann, C. Cantacessi, and A. Cortés
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Host-parasite interactions ,Baseline gut microbiota ,Schistosoma mansoni ,Human-microbiota associated mouse model ,Bacterial 16S rRNA gene sequencing ,Gut microbial diversity ,Veterinary medicine ,SF600-1100 ,Microbiology ,QR1-502 - Abstract
Abstract Mounting evidence of the occurrence of direct and indirect interactions between the human blood fluke, Schistosoma mansoni, and the gut microbiota of rodent models raises questions on the potential role(s) of the latter in the pathophysiology of hepatointestinal schistosomiasis. However, substantial differences in both the composition and function between the gut microbiota of laboratory rodents and that of humans hinders an in-depth understanding of the significance of such interactions for human schistosomiasis. Taking advantage of the availability of a human microbiota-associated mouse model (HMA), we have previously highlighted differences in infection-associated changes in gut microbiota composition between HMA and wildtype (WT) mice. To further explore the dynamics of schistosome-microbiota relationships in HMA mice, in this study we (i) characterize qualitative and quantitative changes in gut microbiota composition of a distinct line of HMA mice (D2 HMA) infected with S. mansoni prior to and following the onset of parasite egg production; (ii) profile local and systemic immune responses against the parasite in HMA as well as WT mice and (iii) assess levels of faecal inflammatory markers and occult blood as indirect measures of gut tissue damage. We show that patent S. mansoni infection is associated with reduced bacterial alpha diversity in the gut of D2 HMA mice, alongside expansion of hydrogen sulphide-producing bacteria. Similar systemic humoral responses against S. mansoni in WT and D2 HMA mice, as well as levels of faecal lipocalin and markers of alternatively activated macrophages, suggest that these are independent of baseline gut microbiota composition. Qualitative comparative analyses between faecal microbial profiles of S. mansoni-infected WT and distinct lines of HMA mice reveal that, while infection-induced alterations of the gut microbiota composition are highly dependent on the baseline flora, bile acid composition and metabolism may represent key elements of schistosome-microbiota interactions through the gut-liver axis.
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- 2024
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13. Corticosteroid monotherapy versus combined cytarabine continuous rate infusion and corticosteroid therapy in dogs with meningoencephalitis of unknown origin: A blinded, randomized, controlled trial
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Bethan S. Jones, Francois Xavier Liebel, Angela Fadda, Sophie Martin, Richard Lawn, Kali Lazzerini, and Thomas Harcourt‐Brown
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dog ,meningoencephalitis of unknown origin ,neurology ,noninfectious meningoencephalitis ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Treatment options available for meningoencephalitis of unknown origin (MUO) in dogs are suboptimal, and currently, no single treatment protocol appears to be superior. Objectives Compare neurological deterioration rates at 7 days between dogs with MUO treated with corticosteroids alone or combined with cytosine arabinoside (CA) continuous rate infusion (CRI) and compare clinical deterioration and survival at 30 and 100 days. Animals Sixty‐nine dogs with magnetic resonance imaging (MRI) and cerebrospinal fluid (CSF) features or both compatible with MUO. Methods Parallel, blinded, randomized controlled trial. Simple randomization into 2 treatment groups: 4 mg/kg/day prednisolone (or dexamethasone equivalent) for 2 days or 200 mg/m2 CA CRI over 8 hours plus 2 mg/kg/day prednisolone. Blinding of the treatment protocol was carried out using reversible redaction of clinical records, and treatment failure was defined as deterioration of neurological assessment or death. Using intention‐to‐treat analysis, proportions failing treatment at 7, 30, and 100 days were compared using Fisher's exact test. All‐cause mortality at 100 days was compared using Kaplan‐Meier survival curves. Results Thirty‐five dogs were allocated to corticosteroid only, and 34 dogs were allocated to combined CA CRI and corticosteroid. Proportions failing treatment at 7, 30, and 100 days were 7/35 (20%), 9/35 (26%), and 15/35 (43%) in the corticosteroid‐only group and 8/34 (24%), 11/34 (32%), and 23/34 (68%) in the corticosteroid and CA CRI group. All‐cause mortality at 100 days was not significantly different between groups (P = .62). Clinically relevant treatment‐related adverse effects were not observed. Conclusions and Clinical Importance We found no difference in outcome between corticosteroid monotherapy and combined cytarabine CRI and corticosteroid therapy at 7, 30, and 100 days after diagnosis in dogs with MUO.
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- 2024
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14. Overhauling Ocean Spatial Planning to Improve Marine Megafauna Conservation
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Sequeira, Ana Micaela Martins, Hays, Graeme Clive, Sims, David W, Eguíluz, Víctor M, Rodríguez, Jorge P, Heupel, Michelle R, Harcourt, Rob, Calich, Hannah, Queiroz, Nuno, Costa, Daniel Paul, Fernández-Gracia, Juan, Ferreira, Luciana C, Goldsworthy, Simon David, Hindell, Mark A, Lea, Mary-Anne, Meekan, Mark G, Pagano, Anthony M, Shaffer, Scott A, Reisser, Julia, Thums, Michele, Weise, Michael, and Duarte, Carlos M
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Life on Land ,Life Below Water ,Oceanography ,Ecology - Published
- 2023
15. Correction: Niche partitioning and individual specialisation in resources and space use of sympatric fur seals at their range margin
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Salton, Marcus, Raoult, Vincent, Jonsen, Ian David, Carr, Matt, and Harcourt, Robert
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- 2024
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16. From Fax to Secure File Transfer Protocol: The 25-Year Evolution of Real-Time Syndromic Surveillance in England
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Alex J Elliot, Helen E Hughes, Sally E Harcourt, Sue Smith, Paul Loveridge, Roger A Morbey, Amardeep Bains, Obaghe Edeghere, Natalia R Jones, Daniel Todkill, and Gillian E Smith
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
The purpose of syndromic surveillance is to provide early warning of public health incidents, real-time situational awareness during incidents and emergencies, and reassurance of the lack of impact on the population, particularly during mass gatherings. The United Kingdom Health Security Agency (UKHSA) currently coordinates a real-time syndromic surveillance service that encompasses 6 national syndromic surveillance systems reporting on daily health care usage across England. Each working day, UKHSA analyzes syndromic data from over 200,000 daily patient encounters with the National Health Service, monitoring over 140 unique syndromic indicators, risk assessing over 50 daily statistical exceedances, and taking and recommending public health action on these daily. This English syndromic surveillance service had its origins as a small exploratory pilot in a single region of England in 1999 involving a new pilot telehealth service, initially reporting only on “cold or flu” calls. This pilot showed the value of syndromic surveillance in England, providing advanced warning of the start of seasonal influenza activity over existing laboratory-based surveillance systems. Since this initial pilot, a program of real-time syndromic surveillance has evolved from the single-system, -region, -indicator pilot (using manual data transfer methods) to an all-hazard, multisystem, automated national service. The suite of systems now monitors a wide range of syndromes, from acute respiratory illness to diarrhea to cardiac conditions, and is widely used in routine public health surveillance and for monitoring seasonal respiratory disease and incidents such as the COVID-19 pandemic. Here, we describe the 25-year evolution of the English syndromic surveillance system, focusing on the expansion and improvements in data sources and data management, the technological and digital enablers, and novel methods of data analytics and visualization.
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- 2024
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17. Leveraging an Electronic Health Record Patient Portal to Help Patients Formulate Their Health Care Goals: Mixed Methods Evaluation of Pilot Interventions
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Jody Naimark, Mary E Tinetti, Tom Delbanco, Zhiyong Dong, Kendall Harcourt, Jessica Esterson, Peter Charpentier, and Jan Walker
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Medicine - Abstract
BackgroundPersons with multiple chronic conditions face complex medical regimens and clinicians may not focus on what matters most to these patients who vary widely in their health priorities. Patient Priorities Care is a facilitator-led process designed to identify patients’ priorities and align decision-making and care, but the need for a facilitator has limited its widespread adoption. ObjectiveThe aims of this study are to design and test mechanisms for patients to complete a self-directed process for identifying priorities and providing their priorities to clinicians. MethodsThe study involved patients of at least 65 years of age at 2 family medicine practices with 5 physicians each. We first tested 2 versions of an interactive website and asked patients to bring their results to their visit. We then tested an Epic previsit questionnaire derived from the website’s questions and included standard previsit materials. We completed postintervention phone interviews and an online survey with participating patients and collected informal feedback and conducted a focus group with participating physicians. ResultsIn the test of the first website version, 17.3% (35/202) of invited patients went to the website, 11.4% (23/202) completed all of the questions, 2.5% (5/202) brought results to their visits, and the median session time was 43.0 (IQR 28.0) minutes. Patients expressed confusion about bringing results to the visit. After clarifying that issue in the second version, 15.1% (32/212) of patients went to the website, 14.6% (31/212) completed the questions, 1.9% (4/212) brought results to the visit, and the median session time was 35.0 (IQR 35.0) minutes. In the test of the Epic questionnaire, 26.4% (198/750) of patients completed the questionnaire before at least 1 visit, and the median completion time was 14.0 (IQR 23.0) minutes. The 8 main questions were answered 62.9% (129/205) to 95.6% (196/205) of the time. Patients who completed questionnaires were younger than those who did not (72.3 vs 76.1 years) and were more likely to complete at least 1 of their other assigned questionnaires (99.5%, 197/198) than those who did not (10.3%, 57/552). A total of 140 of 198 (70.7%) patients responded to a survey, and 86 remembered completing the questionnaire; 78 (90.7%) did not remember having difficulty answering the questions and 57 (68.7%) agreed or somewhat agreed that it helped them and their clinicians to understand their priorities. Doctors noted that the sickest patients did not complete the questionnaire and that the discussion provided a good segue into end-of-life care. ConclusionsEmbedding questionnaires assaying patient priorities into patient portals holds promise for expanding access to priorities-concordant care.
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- 2024
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18. Digital Addiction in Organizations: Challenges and Policy Implications
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Lam, Helen and Harcourt, Mark
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- 2024
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19. From little things big things grow: enhancement of an acoustic telemetry network to monitor broad-scale movements of marine species along Australia’s east coast
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Adam Barnett, Fabrice R. A. Jaine, Stacy L. Bierwagen, Nicolas Lubitz, Kátya Abrantes, Michelle R. Heupel, Rob Harcourt, Charlie Huveneers, Ross G. Dwyer, Vinay Udyawer, Colin A. Simpfendorfer, Ingo B. Miller, Tracey Scott-Holland, Carley S. Kilpatrick, Samuel M Williams, Daniel Smith, Christine L. Dudgeon, Andrew S. Hoey, Richard Fitzpatrick, Felicity E. Osborne, Amy F. Smoothey, Paul A. Butcher, Marcus Sheaves, Eric E. Fisher, Mark Svaikauskas, Megan Ellis, Shiori Kanno, Benjamin J. Cresswell, Nicole Flint, Asia O. Armstrong, Kathy A. Townsend, Jonathan D. Mitchell, Matthew Campbell, Victor M. Peddemors, Johan A. Gustafson, and Leanne M. Currey-Randall
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Animal movement ,Spatial ecology ,Drivers of migration ,Migratory patterns ,Residency ,Sharks ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Acoustic telemetry has become a fundamental tool to monitor the movement of aquatic species. Advances in technology, in particular the development of batteries with lives of > 10 years, have increased our ability to track the long-term movement patterns of many species. However, logistics and financial constraints often dictate the locations and deployment duration of acoustic receivers. Consequently, there is often a compromise between optimal array design and affordability. Such constraints can hinder the ability to track marine animals over large spatial and temporal scales. Continental-scale receiver networks have increased the ability to study large-scale movements, but significant gaps in coverage often remain. Methods Since 2007, the Integrated Marine Observing System’s Animal Tracking Facility (IMOS ATF) has maintained permanent receiver installations on the eastern Australian seaboard. In this study, we present the recent enhancement of the IMOS ATF acoustic tracking infrastructure in Queensland to collect data on large-scale movements of marine species in the northeast extent of the national array. Securing a relatively small initial investment for expanding receiver deployment and tagging activities in Queensland served as a catalyst, bringing together a diverse group of stakeholders (research institutes, universities, government departments, port corporations, industries, Indigenous ranger groups and tourism operators) to create an extensive collaborative network that could sustain the extended receiver coverage into the future. To fill gaps between existing installations and maximise the monitoring footprint, the new initiative has an atypical design, deploying many single receivers spread across 2,100 km of Queensland waters. Results The approach revealed previously unknown broad-scale movements for some species and highlights that clusters of receivers are not always required to enhance data collection. However, array designs using predominantly single receiver deployments are more vulnerable to data gaps when receivers are lost or fail, and therefore “redundancy” is a critical consideration when designing this type of array. Conclusion Initial results suggest that our array enhancement, if sustained over many years, will uncover a range of previously unknown movements that will assist in addressing ecological, fisheries, and conservation questions for multiple species.
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- 2024
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20. Randomized Controlled Trial of Durotomy as an Adjunct to Routine Decompressive Surgery for Dogs With Severe Acute Spinal Cord Injury
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Nick D. Jeffery, John H. Rossmeisl, Tom R. Harcourt-Brown, Nicolas Granger, Daisuke Ito, Kari Foss, and Damian Chase
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canine ,disc herniation ,dural incision ,paraplegia ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Although many interventions for acute spinal cord injury (SCI) appear promising in experimental models, translation directly from experimental animals to human patients is a large step that can be problematic. Acute SCI occurs frequently in companion dogs and may provide a model to ease translation. Recently, incision of the dura has been highlighted in both research animals and human patients as a means of reducing intraspinal pressure, with a view to improving perfusion of the injured tissue and enhancing functional recovery. Observational clinical data in humans and dogs support the notion that it may also improve functional outcome. Here, we report the results of a multi-center randomized controlled trial of durotomy as an adjunct to traditional decompressive surgery for treatment of severe thoracolumbar SCI caused by acute intervertebral disc herniation in dogs. Sample-size calculation was based on the proportion of dogs recovering ambulation improving from an expected 55% in the traditional surgery group to 70% in the durotomy group. Over a 3.5-year period, we enrolled 140 dogs, of which 128 had appropriate duration of follow-up. Overall, 65 (51%) dogs recovered ambulation. Recovery in the traditional decompression group was 35 of 62 (56%) dogs, and in the durotomy group 30 of 66 (45%) dogs, associated with an odds ratio of 0.643 (95% confidence interval: 0.320?1.292) and z-score of ?1.24. This z-score indicates trial futility to reach the target 15% improvement over traditional surgery, and the trial was terminated at this stage. We conclude that durotomy is ineffective in improving functional outcome for severe acute thoracolumbar SCI in dogs. In the future, these data can be compared with similar data from clinical trials on duraplasty in human patients and will aid in determining the predictive validity of the ?companion dog model? of acute SCI.
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- 2024
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21. More than my Appearance: a pilot evaluation of the Expand Your Horizon online functionality-based writing programme for adults with visible differences
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Ella Guest, Emma Halliwell, Abbi Mathews, Jessica M. Alleva, and Diana Harcourt
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Body functionality ,positive body image ,writing intervention ,visible difference ,online intervention ,Medicine ,Psychology ,BF1-990 - Abstract
ABSTRACTBackground Adults with conditions that affect their appearance, known as visible differences, can experience appearance concerns, social anxiety, and depression. Interventions have been developed for this population to facilitate adjustment and coping skills; however, they have limited evidence of efficacy. The Expand Your Horizon [Alleva, J. M., Martijn, C., Van Breukelen, G. J., Jansen, A., & Karos, K. (2015). Expand Your Horizon: A programme that improves body image and reduces self-objectification by training women to focus on body functionality. Body Image, 15, 81–89. https://doi.org/10.1016/j.bodyim.2015.07.001] online functionality-based writing programme was adapted for adults with visible differences.Method A pilot randomised controlled trial with a wait-list control group was carried out to assess preliminary intervention efficacy and gain information about the acceptability and feasibility of the programme. Forty-four adults aged 21–63 years (M = 40.21; SD = 12.05) with visible differences took part. Various facets of body image (i.e. functionality appreciation and body appreciation) as well as depression and anxiety were assessed immediately pre- and post-intervention and at three-months.Results Participants reported enjoying the programme, felt that the format was acceptable, and it significantly increased functionality appreciation, which was maintained at three-months. However, there were no improvements in body appreciation, depression, and anxiety.Conclusions In future, a full trial should be carried out with an active control group.
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- 2024
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22. Viral Kinetics of SARS-CoV-2 in Nursing Home Residents and Staff
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Majerle Reeves, Scott Fridkin, Rachel Slayton, Yasin Abul, Christopher Crnich, Jazmin Duque, Jon Furuno, Stefan Gravenstein, Steven Handler, Jennifer Harcourt, Jessica Healy, Marc Lipsitch, Joseph Lutgring, Jennifer Meddings, Jennifer Meece, Lona Mody, David Nace, Prabasaj Paul, Paulina A. Rebolledo, Tiffany Harris, Morgan Katz, Sujan Reddy, and David Canaday
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Nursing home (NH) residents are at high risk of COVID-19 from exposure to infected staff and other residents. Understanding SARS-CoV-2 viral RNA kinetics in residents and staff can guide testing, isolation, and return to work recommendations. We sought to determine the duration of antigen test and polymerase chain reaction (PCR) positivity in a cohort of NH residents and staff. Methods: We prospectively collected data on SARS-CoV-2 viral kinetics from April 2023 through November 2023. Staff and residents could enroll prospectively or upon a positive test (identified through routine clinical testing, screening, or outbreak response testing). Participating facilities performed routine clinical testing; asymptomatic testing of contacts was performed within 48 hours if an outbreak or known exposure occurred and upon (re-) admission. Enrolled participants who tested positive for SARS-CoV-2 were re-tested daily for 14 days with both nasal antigen and nasal PCR tests. All PCR tests were run by a central lab with the same assay. We conducted a Kaplan-Meier survival analysis on time to first negative test restricted to participants who initially tested positive (day zero) and had at least one test ≥10 days after initially testing positive with the same test type; a participant could contribute to both antigen and PCR survival curves. We compared survival curves for staff and residents using the log-rank test. Results: Twenty-four nursing homes in eight states participated; 587 participants (275 residents, 312 staff) enrolled in the evaluation, participants were only tested through routine clinical or outbreak response testing. Seventy-two participants tested positive for antigen; of these, 63 tested PCR-positive. Residents were antigen- and PCR-positive longer than staff (Figure 1), but this finding is only statistically significant (p=0.006) for duration of PCR positivity. Five days after the first positive test, 56% of 50 residents and 59% of 22 staff remained antigen-positive; 91% of 44 residents and 79% of 19 staff were PCR-positive. Ten days after the first positive test, 22% of 50 residents and 5% of 22 staff remained antigen-positive; 61% of 44 residents and 21% of 19 staff remained PCR-positive. Conclusions: Most NH residents and staff with SARS-CoV-2 remained antigen- or PCR-positive 5 days after the initial positive test; however, differences between staff and resident test positivity were noted at 10 days. These data can inform recommendations for testing, duration of NH resident isolation, and return to work guidance for staff. Additional viral culture data may strengthen these conclusions.
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- 2024
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23. A panel of recombinant Leishmania donovani cell surface and secreted proteins identifies LdBPK_323600.1 as a serological marker of symptomatic infection
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Adam J. Roberts, Han Boon Ong, Simon Clare, Cordelia Brandt, Katherine Harcourt, Yegnasew Takele, Prakash Ghosh, Angela Toepp, Max Waugh, Daniel Matano, Anna Färnert, Emily Adams, Javier Moreno, Margaret Mbuchi, Christine Petersen, Dinesh Mondal, Pascale Kropf, and Gavin J. Wright
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serology ,proteins ,visceral leishmaniasis ,ELISA ,Leishmania donovani ,recombinant proteins ,Microbiology ,QR1-502 - Abstract
ABSTRACTVisceral leishmaniasis is a deadly infectious disease and is one of the world’s major neglected health problems. Because the symptoms of infection are similar to other endemic diseases, accurate diagnosis is crucial for appropriate treatment. Definitive diagnosis using splenic or bone marrow aspirates is highly invasive, and so, serological assays are preferred, including the direct agglutination test (DAT) or rK39 strip test. These tests, however, are either difficult to perform in the field (DAT) or lack specificity in some endemic regions (rK39), making the development of new tests a research priority. The availability of Leishmania spp. genomes presents an opportunity to identify new diagnostic targets. Here, we use genome data and a mammalian protein expression system to create a panel of 93 proteins consisting of the extracellular ectodomains of the Leishmania donovani cell surface and secreted proteins. We use these panel and sera from murine experimental infection models and natural human and canine infections to identify new candidates for serological diagnosis. We observed a concordance between the most immunoreactive antigens in different host species and transmission settings. The antigen encoded by the LdBPK_323600.1 gene can diagnose Leishmania infections with high sensitivity and specificity in patient cohorts from different endemic regions including Bangladesh and Ethiopia. In longitudinal sampling of treated patients, we observed reductions in immunoreactivity to LdBPK_323600.1 suggesting it could be used to diagnose treatment success. In summary, we have identified new antigens that could contribute to improved serological diagnostic tests to help control the impact of this deadly tropical infectious disease.IMPORTANCEVisceral leishmaniasis is fatal if left untreated with patients often displaying mild and non-specific symptoms during the early stages of infection making accurate diagnosis important. Current methods for diagnosis require highly trained medical staff to perform highly invasive biopsies of the liver or bone marrow which pose risks to the patient. Less invasive molecular tests are available but can suffer from regional variations in their ability to accurately diagnose an infection. To identify new diagnostic markers of visceral leishmaniasis, we produced and tested a panel of 93 proteins identified from the genome of the parasite responsible for this disease. We found that the pattern of host antibody reactivity to these proteins was broadly consistent across naturally acquired infections in both human patients and dogs, as well as experimental rodent infections. We identified a new protein called LdBPK_323600.1 that could accurately diagnose visceral leishmaniasis infections in humans.
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- 2024
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24. Experiences and impact of the UK lockdown amongst adults who have a facial visible difference
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Tollow, Philippa, Hamlet, Claire, Zucchelli, Fabio, Williamson, Heidi, and Harcourt, Diana
- Published
- 2023
- Full Text
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25. Tissue-resident B cells orchestrate macrophage polarisation and function
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Ondrej Suchanek, John R. Ferdinand, Zewen K. Tuong, Sathi Wijeyesinghe, Anita Chandra, Ann-Katrin Clauder, Larissa N. Almeida, Simon Clare, Katherine Harcourt, Christopher J. Ward, Rachael Bashford-Rogers, Trevor Lawley, Rudolf A. Manz, Klaus Okkenhaug, David Masopust, and Menna R. Clatworthy
- Subjects
Science - Abstract
Abstract B cells play a central role in humoral immunity but also have antibody-independent functions. Studies to date have focused on B cells in blood and secondary lymphoid organs but whether B cells reside in non-lymphoid organs (NLO) in homeostasis is unknown. Here we identify, using intravenous labeling and parabiosis, a bona-fide tissue-resident B cell population in lung, liver, kidney and urinary bladder, a substantial proportion of which are B-1a cells. Tissue-resident B cells are present in neonatal tissues and also in germ-free mice NLOs, albeit in lower numbers than in specific pathogen-free mice and following co-housing with ‘pet-store’ mice. They spatially co-localise with macrophages and regulate their polarization and function, promoting an anti-inflammatory phenotype, in-part via interleukin-10 production, with effects on bacterial clearance during urinary tract infection. Thus, our data reveal a critical role for tissue-resident B cells in determining the homeostatic ‘inflammatory set-point’ of myeloid cells, with important consequences for tissue immunity.
- Published
- 2023
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26. Long‐term outcome of epileptic dogs treated with implantable vagus nerve stimulators
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Thomas R. Harcourt‐Brown and Michael Carter
- Subjects
dog ,epilepsy ,seizures ,vagus nerve ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background The long‐term effect of implantable vagus nerve stimulators (VNS) on seizures has not been evaluated in epileptic dogs. Objectives Report seizure frequency in medication‐resistant epileptic dogs before and after VNS implantation. Animals Twelve client‐owned dogs with idiopathic epilepsy and >1 seizure day per 3 weeks despite 3 months of appropriate use of 2 antiseizure medications and seizure diaries maintained 6 months before and >12 months after VNS implantation. Methods Uncontrolled, open‐label, before and after study. Mean monthly seizures and inter‐seizure periods obtained from contemporaneous seizure diaries in the 6 months before implantation were compared with 0 to 6 months, 7 to 12 months, and subsequent 12‐month periods after implantation. The number of dogs with >50% decrease in seizure frequency, >3 times increase in inter‐ictal period interval, and seizure freedom for >3 months at the time of death or last follow‐up were recorded. Results Five of 12 dogs were euthanized 50% decrease in seizure frequency until last follow‐up, starting at a median of 37 to 48 months after implantation (range, 0‐6 to 61‐72 months) and a >3‐fold increase in mean inter‐seizure interval starting a median of 25 to 36 months after implantation (range, 0‐6 months to 49‐60 months), 3/7 dogs were seizure‐free at death or last follow‐up. Conclusions and Clinical Importance Monthly seizure frequencies decreased and inter‐seizure intervals increased in all dogs 2 to 3 years after VNS implantation, but a high proportion were euthanized before this time point. Prospective clinical trials are required to establish causality and the magnitude of this association.
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- 2023
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27. Response to letter regarding 'Prospective randomized trial comparing relapse rates in dogs with steroid‐responsive meningitis‐arteritis treated with a 6‐week or 6‐month prednisolone protocol'
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Jeremy H. Rose, Colin J. Driver, Lorna Arrol, Thomas J. A. Cardy, Joana Tabanez, Anna Tauro, Ricardo Fernandes, Imogen Schofield, Sophie Adamantos, Nicolas Granger, and Thomas R. Harcourt‐Brown
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Veterinary medicine ,SF600-1100 - Published
- 2024
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28. Tissue-resident B cells orchestrate macrophage polarisation and function
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Suchanek, Ondrej, Ferdinand, John R., Tuong, Zewen K., Wijeyesinghe, Sathi, Chandra, Anita, Clauder, Ann-Katrin, Almeida, Larissa N., Clare, Simon, Harcourt, Katherine, Ward, Christopher J., Bashford-Rogers, Rachael, Lawley, Trevor, Manz, Rudolf A., Okkenhaug, Klaus, Masopust, David, and Clatworthy, Menna R.
- Published
- 2023
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29. Southern Ocean pinnipeds provide bathymetric insights on the East Antarctic continental shelf
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McMahon, Clive R., Hindell, Mark A., Charrassin, Jean Benoit, Coleman, Richard, Guinet, Christophe., Harcourt, Robert, Labrousse, Sara, Raymond, Benjemin, Sumner, Michael, and Ribeiro, Natalia
- Published
- 2023
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30. International Sports Federation’s commitment to protecting clean athletes: an evolution of priority and action
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Peter Harcourt, Jane Moran, Jeremy Foster, Alexis Weber, James Carr, Suart Miller, and Neb Nikolic
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Medicine (General) ,R5-920 - Published
- 2024
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31. Nonparametric estimation of marginal distributions for unordered pairs
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Dumitrescu, L. and Harcourt, D.
- Subjects
Mathematics - Statistics Theory - Abstract
In this article, we consider the estimation of the marginal distributions for pairs of data are recorded, with unobserved order in each pair. New estimators are proposed and their asymptotic properties are established, by proving a Glivenko-Cantelli theorem and a functional central limit result. Results from a simulation study are included and we illustrate the applicability of the method on the homologous chromosomes data.
- Published
- 2021
32. Antigenic Characterization of Circulating and Emerging SARS-CoV-2 Variants in the U.S. throughout the Delta to Omicron Waves
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Han Di, Elizabeth A. Pusch, Joyce Jones, Nicholas A. Kovacs, Norman Hassell, Mili Sheth, Kelly Sabrina Lynn, Matthew W. Keller, Malania M. Wilson, Lisa M. Keong, Dan Cui, So Hee Park, Reina Chau, Kristine A. Lacek, Jimma D. Liddell, Marie K. Kirby, Genyan Yang, Monique Johnson, Sharmi Thor, Natosha Zanders, Chenchen Feng, Diya Surie, Jennifer DeCuir, Sandra N. Lester, Lydia Atherton, Heather Hicks, Azaibi Tamin, Jennifer L. Harcourt, Melissa M. Coughlin, Wesley H. Self, Jillian P. Rhoads, Kevin W. Gibbs, David N. Hager, Nathan I. Shapiro, Matthew C. Exline, Adam S. Lauring, Benjamin Rambo-Martin, Clinton R. Paden, Rebecca J. Kondor, Justin S. Lee, John R. Barnes, Natalie J. Thornburg, Bin Zhou, David E. Wentworth, and Charles Todd Davis
- Subjects
SARS-CoV-2 ,COVID-19 vaccine ,Delta variant ,Omicron variant ,antigenic characterization ,neutralizing antibody ,Medicine - Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has evolved into numerous lineages with unique spike mutations and caused multiple epidemics domestically and globally. Although COVID-19 vaccines are available, new variants with the capacity for immune evasion continue to emerge. To understand and characterize the evolution of circulating SARS-CoV-2 variants in the U.S., the Centers for Disease Control and Prevention (CDC) initiated the National SARS-CoV-2 Strain Surveillance (NS3) program and has received thousands of SARS-CoV-2 clinical specimens from across the nation as part of a genotype to phenotype characterization process. Focus reduction neutralization with various antisera was used to antigenically characterize 143 SARS-CoV-2 Delta, Mu and Omicron subvariants from selected clinical specimens received between May 2021 and February 2023, representing a total of 59 unique spike protein sequences. BA.4/5 subvariants BU.1, BQ.1.1, CR.1.1, CQ.2 and BA.4/5 + D420N + K444T; BA.2.75 subvariants BM.4.1.1, BA.2.75.2, CV.1; and recombinant Omicron variants XBF, XBB.1, XBB.1.5 showed the greatest escape from neutralizing antibodies when analyzed against post third-dose original monovalent vaccinee sera. Post fourth-dose bivalent vaccinee sera provided better protection against those subvariants, but substantial reductions in neutralization titers were still observed, especially among BA.4/5 subvariants with both an N-terminal domain (NTD) deletion and receptor binding domain (RBD) substitutions K444M + N460K and recombinant Omicron variants. This analysis demonstrated a framework for long-term systematic genotype to antigenic characterization of circulating and emerging SARS-CoV-2 variants in the U.S., which is critical to assessing their potential impact on the effectiveness of current vaccines and antigen recommendations for future updates.
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- 2024
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33. Words Matter: What Do Patients Find Judgmental or Offensive in Outpatient Notes?
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Fernández, Leonor, Fossa, Alan, Dong, Zhiyong, Delbanco, Tom, Elmore, Joann, Fitzgerald, Patricia, Harcourt, Kendall, Perez, Jocelyn, Walker, Jan, and DesRoches, Catherine
- Subjects
bias ,health information transparency ,language ,patient-doctor relationship ,trust ,Adult ,Electronic Health Records ,Humans ,Outpatients ,Patient Portals ,Pennsylvania ,Surveys and Questionnaires - Abstract
BACKGROUND: Sharing outpatient notes with patients may bring clinically important benefits, but notes may sometimes cause patients to feel judged or offended, and thereby reduce trust. OBJECTIVE: As part of a larger survey examining the effects of open notes, we sought to understand how many patients feel judged or offended due to something they read in outpatient notes, and why. DESIGN: We analyzed responses from a large Internet survey of adult patients who used secure patient portals and had at least 1 visit note available in a 12-month period at 2 large academic medical systems in Boston and Seattle, and in a rural integrated health system in Pennsylvania. PARTICIPANTS: Adult ambulatory patients with portal accounts in health systems that offered open notes for up to 7 years. APPROACH: (1) Quantitative analysis of 2 dichotomous questions, and (2) qualitative thematic analysis of free-text responses on what patients found judgmental or offensive. KEY RESULTS: Among 22,959 patient respondents who had read at least one note and answered the 2 questions, 2,411 (10.5%) reported feeling judged and/or offended by something they read in their note(s). Patients who reported poor health, unemployment, or inability to work were more likely to feel judged or offended. Among the 2,411 patients who felt judged and/or offended, 2,137 (84.5%) wrote about what prompted their feelings. Three thematic domains emerged: (1) errors and surprises, (2) labeling, and (3) disrespect. CONCLUSIONS: One in 10 respondents reported feeling judged/offended by something they read in an outpatient note due to the perception that it contained errors, surprises, labeling, or evidence of disrespect. The content and tone may be particularly important to patients in poor health. Enhanced clinician awareness of the patient perspective may promote an improved medical lexicon, reduce the transmission of bias to other clinicians, and reinforce healing relationships.
- Published
- 2021
34. Body image concerns in long-term head and neck cancer survivors: prevalence and role of clinical factors and patient-reported late effects
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Ivanova, Anna, Rodríguez-Cano, Rubén, Kvalem, Ingela Lundin, Harcourt, Diana, Kiserud, Cecilie E., and Amdal, Cecilie D.
- Published
- 2023
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35. Southern Ocean pinnipeds provide bathymetric insights on the East Antarctic continental shelf
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Clive R. McMahon, Mark A. Hindell, Jean Benoit Charrassin, Richard Coleman, Christophe. Guinet, Robert Harcourt, Sara Labrousse, Benjemin Raymond, Michael Sumner, and Natalia Ribeiro
- Subjects
Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Abstract Poor coverage of the Antarctic continental shelf bathymetry impedes understanding the oceanographic processes affecting Antarctica’s role in global climate. Continental shelf bathymetry influences warm modified Circumpolar Deep Water movement onto the shelf, making it an important factor promoting ice shelf melting and influencing the flow of ice shelves into the ocean. Building on previous work using seal dives to redefine bathymetry, our longitudinal study of ocean physics and animal behaviour provided new depth information from over 500,000 individual seal dives on the East Antarctic continental shelf. About 25% of these seal dives were 220 m (sometimes over 1000 m) deeper than the interpolated seafloor from IBCSO V2. Focusing on four well-sampled regions, we show that the bathymetry of 22% to 60% of the sampled area was improved by incorporating seal dive data. This revealed new bathymetric features, including troughs off the Shackleton Ice Shelf and Underwood Glacier and a deep canyon near the Vanderford Glacier. This deep canyon, the Mirounga-Nuyina Canyon, was confirmed by a recent multi-beam echo sounder survey. Further acquisitions of seal data will improve our understanding and modelling of Antarctic coastal ocean processes and ice-sheet dynamics.
- Published
- 2023
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36. Intraspecific trait variation modulates the temperature effect on elemental quotas and stoichiometry in marine Synechococcus
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Renne Harcourt, Nathan S. Garcia, and Adam C. Martiny
- Subjects
Medicine ,Science - Published
- 2024
37. Making respiratory care safe for neonatal and paediatric intensive care unit staff: Mitigation strategies and use of filters
- Author
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Bradley G Carter, Edward Harcourt, Alexandra Harris, Michael Zampetti, Trevor Duke, and David Tingay
- Subjects
Diseases of the respiratory system ,RC705-779 - Abstract
# Background Many medical devices in pediatric and newborn intensive care units can potentially expose healthcare workers (HCWs) and others to transmission of respiratory and other viruses and bacteria. Such fomites include ventilators, nebulizers, and monitoring equipment. # Approach We report the general, novel approach we have taken to identify and mitigate these risks and to protect HCWs, visitors and patients from exposure while maintaining the optimal performance of such respiratory equipment. # Findings The approach combined a high level of personal protective equipment (PPE), strict hand hygiene, air filtration and air conditioning and other relevant viral risk mitigation guidelines. This report describes the experiences from the SARS-CoV-2 pandemic to provide a reference framework that can be applied generally. The steps we took consisted of auditing our equipment and processes to identify risk through sources of potentially contaminated gas that may contain aerosolized virus, seeking advice and liaising with suppliers/manufacturers, devising mitigation strategies using indirect and direct approaches (largely filtering), performing tests on equipment to verify proper function and the absence of negative impacts and the development and implementation of relevant procedures and practices. We had a multidisciplinary team to guide the process. We monitored daily for hospital-acquired infections among staff caring for SARS-CoV-2 patients. # Conclusion Our approach was successful as we have continued to offer optimal intensive care to our patients, and we did not find any healthcare worker who was infected through the course of caring for patients at the bedside. The lessons learnt will be of benefit to future local outbreaks or pandemics.
- Published
- 2024
- Full Text
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38. A continuous-time state-space model for rapid quality-control of Argos locations from animal-borne tags
- Author
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Jonsen, Ian D., Patterson, Toby A., Costa, Daniel P., Doherty, Philip D., Godley, Brendan J., Grecian, W. James, Guinet, Christophe, Hoenner, Xavier, Kienle, Sarah S., Robison, Patrick W., Votier, Stephen C., Witt, Matthew J., Hindell, Mark A., Harcourt, Robert G., and McMahon, Clive R.
- Subjects
Quantitative Biology - Quantitative Methods ,Statistics - Applications - Abstract
State-space models are important tools for quality control of error-prone animal movement data. The near real-time (within 24 h) capability of the Argos satellite system aids dynamic ocean management of human activities by informing when animals enter intensive use zones. This capability also facilitates use of ocean observations from animal-borne sensors in operational ocean forecasting models. Such near real-time data provision requires rapid, reliable quality control to deal with error-prone Argos locations. We formulate a continuous-time state-space model for the three types of Argos location data (Least-Squares, Kalman filter, and Kalman smoother), accounting for irregular timing of observations. Our model is deliberately simple to ensure speed and reliability for automated, near real-time quality control of Argos data. We validate the model by fitting to Argos data collected from 61 individuals across 7 marine vertebrates and compare model-estimated locations to GPS locations. Estimation accuracy varied among species with median Root Mean Squared Errors usually < 5 km and decreased with increasing data sampling rate and precision of Argos locations. Including a model parameter to inflate Argos error ellipse sizes resulted in more accurate location estimates. In some cases, the model appreciably improved the accuracy of the Argos Kalman smoother locations, which should not be possible if the smoother uses all available information. Our model provides quality-controlled locations from Argos Least-Squares or Kalman filter data with slightly better accuracy than Argos Kalman smoother data that are only available via reprocessing. Simplicity and ease of use make the model suitable both for automated quality control of near real-time Argos data and for manual use by researchers working with historical Argos data., Comment: 25 pages, 10 figures
- Published
- 2020
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39. A social science research agenda to accelerate public engagement in climate change adaptation
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Rachel Harcourt, Suraje Dessai, Wandi Bruine de Bruin, and Andrea Taylor
- Subjects
climate change adaptation ,public perceptions ,research agenda ,communications ,engagement ,social science ,Psychology ,BF1-990 - Abstract
Recent studies find that people in high-income countries now think of climate change impacts, such as flooding or periods of high temperature, as being of immediate relevance and concern. Individuals and households can take adaptation actions to help limit the severity of harm caused when climate impacts occur, for example, they could make adjustments to their homes such as installing flood gates or sun shades, or they could adapt their behavior such as staying indoors during the hottest part of the day. However, so far adaptation is not yet happening at the speed or scale needed to adequately prepare for the climate impacts already being experienced or those projected for the coming decades. Here, we propose an agenda for future social science research that would further our understanding of how best to increase engagement and action in climate change adaptation.
- Published
- 2023
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40. 94 GHz Radar Backscatter Characteristics of Alpine Glacier Ice
- Author
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W. D. Harcourt, D. A. Robertson, D. G. Macfarlane, B. R. Rea, and M. Spagnolo
- Subjects
millimeter‐wave radar ,alpine glacier ,point clouds ,radar backscatter ,surface roughness ,Geophysics. Cosmic physics ,QC801-809 - Abstract
Abstract Measuring the radar backscatter characteristics of glacier ice at different frequencies and incidence angles is fundamental to predicting the glacier mapping performance of a sensor. However, such measurements at 94 GHz do not exist. To address this knowledge gap, we collected 94 GHz radar backscatter data from the surface of Rhônegletscher in Switzerland using the All‐Weather Volcano Topography Imaging Sensor (AVTIS2) real‐aperture Frequency Modulated Continuous Wave radar. We determine the mean normalized radar cross section σmean0 to be −9.9 dB. The distribution closely follows a log‐normal distribution with a high goodness of fit (R2 = 0.99) which suggests that radar backscatter is diffuse and driven by surface roughness. Further, we quantified the uncertainty of AVTIS2 3D point clouds to be 1.30–3.72 m, which is smaller than other ground‐based glacier surface mapping radars. These results demonstrate that glacier surfaces are an efficient scattering target at 94 GHz, hence demonstrating the suitability of millimeter‐wave radar for glacier monitoring.
- Published
- 2023
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41. Co-Designing an Initiative to Increase Shared Access to Older Adults’ Patient Portals: Stakeholder Engagement
- Author
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Vadim Dukhanin, Jennifer L Wolff, Liz Salmi, Kendall Harcourt, Deborah Wachenheim, Ira Byock, Matthew J Gonzales, Doug Niehus, Marianne Parshley, Caroline Reay, Sara Epstein, Supriya Mohile, Timothy W Farrell, Mark A Supiano, Anushka Jajodia, and Catherine M DesRoches
- Subjects
Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundThe patient portal is a widely available secure digital platform offered by care delivery organizations that enables patients to communicate electronically with clinicians and manage their care. Many organizations allow patients to authorize family members or friends—“care partners”—to share access to patient portal accounts, thus enabling care partners to receive their own identity credentials. Shared access facilitates trilateral information exchange among patients, clinicians, and care partners; however, uptake and awareness of this functionality are limited. ObjectiveWe partnered with 3 health care organizations to co-design an initiative that aimed to increase shared access registration and use and that can be implemented using existing patient portals. MethodsIn 2020, we undertook a rigorous selection process to identify 3 geographically diverse health care organizations that had engaged medical informatics teams and clinical champions within service delivery lines caring for older adults. We prioritized selecting organizations that serve racially and socioeconomically diverse populations and possess sophisticated reporting capabilities, a stable patient portal platform, a sufficient volume of older adult patients, and active patient and family advisory councils. Along with patients and care partners, clinicians, staff, and other stakeholders, the study team co-designed an initiative to increase the uptake of shared access guided by either an iterative, human-centered design process or rapid assessment procedures of stakeholders’ inputs. ResultsBetween February 2020 and April 2022, 73 stakeholder engagements were conducted with patients and care partners, clinicians and clinic staff, medical informatics teams, marketing and communications staff, and administrators, as well as with funders and thought leaders. We collected insights regarding (1) barriers to awareness, registration, and use of shared access; (2) features of consumer-facing educational materials to address identified barriers; (3) features of clinician- and staff-facing materials to address identified barriers; and (4) approaches to fit the initiative into current workflows. Using these inputs iteratively via a human-centered design process, we produced brochures and posters, co-designed organization-specific web pages detailing shared access registration processes, and developed clinician and staff talking points about shared access and staff tip sheets that outline shared access registration steps. Educational materials emphasized the slogan “People remember less than half of what their doctors say,” which was selected from 9 candidate alternatives as resonating best with the full range of the initiative’s stakeholders. The materials were accompanied by implementation toolkits specifying and reinforcing workflows involving both in-person and telehealth visits. ConclusionsMeaningful and authentic stakeholder engagement allowed our deliberate, iterative, and human-centered co-design aimed at increasing the use of shared access. Our initiative has been launched as a part of a 12-month demonstration that will include quantitative and qualitative analysis of registration and use of shared access. Educational materials are publicly available at Coalition for Care Partners.
- Published
- 2023
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42. ‘: Improving appearance-based stigma, conceptualisation of beauty and body esteem through a documentary
- Author
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Abigail Mathews, Bruna Costa, Aida Mikkola, and Diana Harcourt
- Subjects
Dermatology ,RL1-803 ,Surgery ,RD1-811 - Abstract
Introduction Those with an altered appearance as a result of injury, health condition or treatment can face stigma, which may contribute to adverse psychosocial outcomes. However, current research tends to focus on supporting individuals themselves to cope, rather than targeting societal stigma. This study aimed to reduce societal stigma towards this group, through the use of a documentary about people with scars. Methods 146 adults completed questionnaires before and after viewing the documentary. Results After viewing, participants had reduced self-reported intentions to behave in a stigmatising way towards those with visible differences, broader conceptualisation of beauty, and more positive body-esteem. Qualitative data also suggested further positive impacts. Conclusion Those with visible differences (for example scars) are subject to societal stigmatisation which perpetuates psychological and social problems. Therefore, alleviating social stigma through the media, as demonstrated through the documentary in this study, may improve the lives of those living with visible differences. Lay Summary People with an altered appearance or scars as a result of injury, health condition or treatment can face stigma, which may contribute to harmful psychological and social outcomes. However, current research tends to focus on supporting affected individuals themselves to cope, rather than targeting societal stigma. This study aimed to find out whether a documentary about people with scars was successful at reducing viewers’ stigma towards this group. A group of 146 adults completed questionnaires before and after viewing the documentary. After viewing, questionnaires indicated that participants had reduced intentions to behave in a stigmatising way towards those with visible differences. Furthermore, they also viewed a broader range of appearances as beautiful and felt more positive about their own bodies. Comments and feedback from participants also suggested further positive impacts. Those with visible differences (for example scars) are subject to societal stigmatisation which can cause and worsen mental health problems. Therefore, alleviating social stigma through the media, as demonstrated through the documentary in this study, may improve the lives of those living with visible differences.
- Published
- 2023
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43. aniMotum, an R package for animal movement data: Rapid quality control, behavioural estimation and simulation
- Author
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Ian D. Jonsen, W. James Grecian, Lachlan Phillips, Gemma Carroll, Clive McMahon, Robert G. Harcourt, Mark A. Hindell, and Toby A. Patterson
- Subjects
animal movement ,biologging ,bio‐telemetry ,move persistence ,movement behaviour ,random walk ,Ecology ,QH540-549.5 ,Evolution ,QH359-425 - Abstract
Abstract Animal tracking data are indispensable for understanding the ecology, behaviour and physiology of mobile or cryptic species. Meaningful signals in these data can be obscured by noise due to imperfect measurement technologies, requiring rigorous quality control as part of any comprehensive analysis. State–space models are powerful tools that separate signal from noise. These tools are ideal for quality control of error‐prone location data and for inferring where animals are and what they are doing when they record or transmit other information. However, these statistical models can be challenging and time‐consuming to fit to diverse animal tracking data sets. The R package aniMotum eases the tasks of conducting quality control on and inference of changes in movement from animal tracking data. This is achieved via: (1) a simple but extensible workflow that accommodates both novice and experienced users; (2) automated processes that alleviate complexity from data processing and model specification/fitting steps; (3) simple movement models coupled with a powerful numerical optimization approach for rapid and reliable model fitting. We highlight aniMotum's capabilities through three applications to real animal tracking data. Full R code for these and additional applications is included as Supporting Information, so users can gain a deeper understanding of how to use aniMotum for their own analyses.
- Published
- 2023
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- View/download PDF
44. Quantification of monodisperse and biocompatible gold nanoparticles by single-particle ICP-MS
- Author
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Frickenstein, Alex N., Mukherjee, Shirsha, Harcourt, Tekena, He, Yuxin, Sheth, Vinit, Wang, Lin, Malik, Zain, and Wilhelm, Stefan
- Published
- 2023
- Full Text
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45. Introduction: The Violence of Development
- Author
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Kothari, Smitu and Harcourt, Wendy
- Published
- 2022
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46. Reflections on the Violence of Development
- Author
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Harcourt, Wendy
- Published
- 2022
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47. A proposed redesign of elective cataract services in Scotland – pilot project
- Author
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Dhillon, Niku, Ghazal, Dina, Harcourt, Jane, and Kumarasamy, Manjula
- Published
- 2022
- Full Text
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48. Tracking of marine predators to protect Southern Ocean ecosystems
- Author
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Hindell, Mark A, Reisinger, Ryan R, Ropert-Coudert, Yan, Hückstädt, Luis A, Trathan, Philip N, Bornemann, Horst, Charrassin, Jean-Benoît, Chown, Steven L, Costa, Daniel P, Danis, Bruno, Lea, Mary-Anne, Thompson, David, Torres, Leigh G, Van de Putte, Anton P, Alderman, Rachael, Andrews-Goff, Virginia, Arthur, Ben, Ballard, Grant, Bengtson, John, Bester, Marthán N, Blix, Arnoldus Schytte, Boehme, Lars, Bost, Charles-André, Boveng, Peter, Cleeland, Jaimie, Constantine, Rochelle, Corney, Stuart, Crawford, Robert JM, Dalla Rosa, Luciano, de Bruyn, PJ Nico, Delord, Karine, Descamps, Sébastien, Double, Mike, Emmerson, Louise, Fedak, Mike, Friedlaender, Ari, Gales, Nick, Goebel, Michael E, Goetz, Kimberly T, Guinet, Christophe, Goldsworthy, Simon D, Harcourt, Rob, Hinke, Jefferson T, Jerosch, Kerstin, Kato, Akiko, Kerry, Knowles R, Kirkwood, Roger, Kooyman, Gerald L, Kovacs, Kit M, Lawton, Kieran, Lowther, Andrew D, Lydersen, Christian, Lyver, Phil O’B, Makhado, Azwianewi B, Márquez, Maria EI, McDonald, Birgitte I, McMahon, Clive R, Muelbert, Monica, Nachtsheim, Dominik, Nicholls, Keith W, Nordøy, Erling S, Olmastroni, Silvia, Phillips, Richard A, Pistorius, Pierre, Plötz, Joachim, Pütz, Klemens, Ratcliffe, Norman, Ryan, Peter G, Santos, Mercedes, Southwell, Colin, Staniland, Iain, Takahashi, Akinori, Tarroux, Arnaud, Trivelpiece, Wayne, Wakefield, Ewan, Weimerskirch, Henri, Wienecke, Barbara, Xavier, José C, Wotherspoon, Simon, Jonsen, Ian D, and Raymond, Ben
- Subjects
Life Below Water ,Climate Action ,Animal Identification Systems ,Animals ,Antarctic Regions ,Aquatic Organisms ,Biodiversity ,Birds ,Climate Change ,Conservation of Natural Resources ,Ecosystem ,Fishes ,Food Chain ,Ice Cover ,Mammals ,Oceans and Seas ,Population Dynamics ,Predatory Behavior ,General Science & Technology - Abstract
Southern Ocean ecosystems are under pressure from resource exploitation and climate change1,2. Mitigation requires the identification and protection of Areas of Ecological Significance (AESs), which have so far not been determined at the ocean-basin scale. Here, using assemblage-level tracking of marine predators, we identify AESs for this globally important region and assess current threats and protection levels. Integration of more than 4,000 tracks from 17 bird and mammal species reveals AESs around sub-Antarctic islands in the Atlantic and Indian Oceans and over the Antarctic continental shelf. Fishing pressure is disproportionately concentrated inside AESs, and climate change over the next century is predicted to impose pressure on these areas, particularly around the Antarctic continent. At present, 7.1% of the ocean south of 40°S is under formal protection, including 29% of the total AESs. The establishment and regular revision of networks of protection that encompass AESs are needed to provide long-term mitigation of growing pressures on Southern Ocean ecosystems.
- Published
- 2020
49. The retrospective analysis of Antarctic tracking data project.
- Author
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Ropert-Coudert, Yan, Van de Putte, Anton P, Reisinger, Ryan R, Bornemann, Horst, Charrassin, Jean-Benoît, Costa, Daniel P, Danis, Bruno, Hückstädt, Luis A, Jonsen, Ian D, Lea, Mary-Anne, Thompson, David, Torres, Leigh G, Trathan, Philip N, Wotherspoon, Simon, Ainley, David G, Alderman, Rachael, Andrews-Goff, Virginia, Arthur, Ben, Ballard, Grant, Bengtson, John, Bester, Marthán N, Blix, Arnoldus Schytte, Boehme, Lars, Bost, Charles-André, Boveng, Peter, Cleeland, Jaimie, Constantine, Rochelle, Crawford, Robert JM, Dalla Rosa, Luciano, Nico de Bruyn, PJ, Delord, Karine, Descamps, Sébastien, Double, Mike, Emmerson, Louise, Fedak, Mike, Friedlaender, Ari, Gales, Nick, Goebel, Mike, Goetz, Kimberly T, Guinet, Christophe, Goldsworthy, Simon D, Harcourt, Rob, Hinke, Jefferson T, Jerosch, Kerstin, Kato, Akiko, Kerry, Knowles R, Kirkwood, Roger, Kooyman, Gerald L, Kovacs, Kit M, Lawton, Kieran, Lowther, Andrew D, Lydersen, Christian, Lyver, Phil O'B, Makhado, Azwianewi B, Márquez, Maria EI, McDonald, Birgitte I, McMahon, Clive R, Muelbert, Monica, Nachtsheim, Dominik, Nicholls, Keith W, Nordøy, Erling S, Olmastroni, Silvia, Phillips, Richard A, Pistorius, Pierre, Plötz, Joachim, Pütz, Klemens, Ratcliffe, Norman, Ryan, Peter G, Santos, Mercedes, Southwell, Colin, Staniland, Iain, Takahashi, Akinori, Tarroux, Arnaud, Trivelpiece, Wayne, Wakefield, Ewan, Weimerskirch, Henri, Wienecke, Barbara, Xavier, José C, Raymond, Ben, and Hindell, Mark A
- Abstract
The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. RAATD consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets and accompanying syntheses provide a greater understanding of fundamental ecosystem processes in the Southern Ocean, support modelling of predator distributions under future climate scenarios and create inputs that can be incorporated into decision making processes by management authorities. In this data paper, we present the compiled tracking data from research groups that have worked in the Antarctic since the 1990s. The data are publicly available through biodiversity.aq and the Ocean Biogeographic Information System. The archive includes tracking data from over 70 contributors across 12 national Antarctic programs, and includes data from 17 predator species, 4060 individual animals, and over 2.9 million observed locations.
- Published
- 2020
50. A continuous-time state-space model for rapid quality control of argos locations from animal-borne tags.
- Author
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Jonsen, Ian, Patterson, Toby, Costa, Daniel, Doherty, Philip, Godley, Brendan, Grecian, W, Guinet, Christophe, Hoenner, Xavier, Kienle, Sarah, Robinson, Patrick, Votier, Stephen, Whiting, Scott, Witt, Matthew, Hindell, Mark, Harcourt, Robert, and McMahon, Clive
- Subjects
Animal-borne sensors ,Bio-telemetry ,Global Positioning System ,Pinniped ,Sea turtle ,Seabird ,Template Model Builder ,foieGras R package - Abstract
BACKGROUND: State-space models are important tools for quality control and analysis of error-prone animal movement data. The near real-time (within 24 h) capability of the Argos satellite system can aid dynamic ocean management of human activities by informing when animals enter wind farms, shipping lanes, and other intensive use zones. This capability also facilitates the use of ocean observations from animal-borne sensors in operational ocean forecasting models. Such near real-time data provision requires rapid, reliable quality control to deal with error-prone Argos locations. METHODS: We formulate a continuous-time state-space model to filter the three types of Argos location data (Least-Squares, Kalman filter, and Kalman smoother), accounting for irregular timing of observations. Our model is deliberately simple to ensure speed and reliability for automated, near real-time quality control of Argos location data. We validate the model by fitting to Argos locations collected from 61 individuals across 7 marine vertebrates and compare model-estimated locations to contemporaneous GPS locations. We then test assumptions that Argos Kalman filter/smoother error ellipses are unbiased, and that Argos Kalman smoother location accuracy cannot be improved by subsequent state-space modelling. RESULTS: Estimation accuracy varied among species with Root Mean Squared Errors usually
- Published
- 2020
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