84 results on '"Harbeck M"'
Search Results
2. Synthesis and DMMP sensing properties of fluoroalkyloxy and fluoroaryloxy substituted phthalocyanines in acoustic sensors
- Author
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Tasaltin, C., Gurol, I., Harbeck, M., Musluoglu, E., Ahsen, V., and Ozturk, Z.Z.
- Published
- 2010
- Full Text
- View/download PDF
3. Insulin action on metabolism
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Heesom, K. J., Harbeck, M., Kahn, C. R., and Denton, R. M.
- Published
- 1997
- Full Text
- View/download PDF
4. OBJECT RECOGNITION BY A ROBUST MATCHING TECHNIQUE
- Author
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SALZBRUNN, R., primary, NIEMANN, H., additional, HARBECK, M., additional, and WINZEN, A., additional
- Published
- 1993
- Full Text
- View/download PDF
5. How bone degradation, age, and collagen extraction methods affect stable isotope analysis
- Author
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Hoke, N., primary, Rott, A., additional, Johler, S., additional, Reul, A., additional, Beck, A., additional, Günther, A., additional, Hochleitner, R., additional, Kaliwoda, M., additional, and Harbeck, M., additional
- Published
- 2018
- Full Text
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6. A high-coverage Yersinia pestis genome from a 6th-century Justinianic plague victim
- Author
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Feldman, M., Harbeck, M., Keller, M., Spyrou, M., https://orcid.org/0000-0002-3615-3936, Rott, A., Trautmann, B., Scholz, H., Päffgen, B., Peters, J., McCormick, M., Bos, K., https://orcid.org/0000-0003-2937-3006, Herbig, A., https://orcid.org/0000-0003-1176-1166, Krause, J., and https://orcid.org/0000-0001-9144-3920
- Published
- 2016
7. Römisches Orbitaimplantat?
- Author
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Codreanu-Windauer S, Tekeva-Rohrbach Ci, Harbeck M, Mach M, Holzhauser P, and Rohrbach Jm
- Subjects
Ophthalmology ,Left orbit ,Orbital implant ,media_common.quotation_subject ,Art ,Ancient history ,Skeleton (category theory) ,media_common - Abstract
During an excavation in Regensburg/Germany the skeleton of an approximately 20-year-old Roman man was found who was buried in the 3rd/4th century after Christ. A "stone" was found which fitted into the left orbit precisely. After a thorough investigation of the "stone" and with the ophthalmohistorical literature in mind an orbital "implant" as well as a petrified medical paste ("Kollyrium") could be ruled out almost with certainty. Possibly the "stone" served another medical purpose or was used for protection of the eye.
- Published
- 2012
8. Digging up the plague: A diachronic comparison of aDNA confirmed plague burials and associated burial customs in Germany.
- Author
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Gutsmiedl-Schümann, D., Päffgen, B., Schwarzberg, H., Keller, M., Rott, A., and Harbeck, M.
- Subjects
MASS burials ,FUNERALS ,BLACK Death pandemic, 1348-1351 ,PANDEMICS ,DNA analysis ,YERSINIA pestis - Abstract
Copyright of Praehistorische Zeitschrift is the property of De Gruyter and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2017
- Full Text
- View/download PDF
9. Phthalocyanine As Sensitive Coatings For Qcm Sensors-Experimental And Computational Approaches
- Author
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Erbahar, D. D., Harbeck, M., Gurol, I., Musluoglu, E., Ozturk, Z. Z., and Berber, S.
- Abstract
Sorption of organic compounds from aqueous phase into phthalocyanines (Pc) is studied using QCM sensors and Density Functional Theory (DFT) for the first time. The focus is set on the influence of substitution type and central metal atom on the liquid sensing properties of the Pcs.
- Published
- 2011
10. Yersinia pestis and the Plague of Justinian 541-543 AD: A genomic analysis
- Author
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Wagner, DM, Klunk, J, Harbeck, M, Devault, A, Waglechner, N, Sahl, JW, Enk, J, Birdsell, DN, Kuch, M, Lumibao, C, Poinar, D, Pearson, T, Fourment, M, Golding, B, Riehm, JM, Earn, DJD, DeWitte, S, Rouillard, JM, Grupe, G, Wiechmann, I, Bliska, JB, Keim, PS, Scholz, HC, Holmes, EC, Poinar, H, Wagner, DM, Klunk, J, Harbeck, M, Devault, A, Waglechner, N, Sahl, JW, Enk, J, Birdsell, DN, Kuch, M, Lumibao, C, Poinar, D, Pearson, T, Fourment, M, Golding, B, Riehm, JM, Earn, DJD, DeWitte, S, Rouillard, JM, Grupe, G, Wiechmann, I, Bliska, JB, Keim, PS, Scholz, HC, Holmes, EC, and Poinar, H
- Abstract
Background: Yersinia pestis has caused at least three human plague pandemics. The second (Black Death, 14-17th centuries) and third (19-20th centuries) have been genetically characterised, but there is only a limited understanding of the first pandemic, the Plague of Justinian (6-8th centuries). To address this gap, we sequenced and analysed draft genomes of Y pestis obtained from two individuals who died in the first pandemic. Methods: Teeth were removed from two individuals (known as A120 and A76) from the early medieval Aschheim-Bajuwarenring cemetery (Aschheim, Bavaria, Germany). We isolated DNA from the teeth using a modified phenol-chloroform method. We screened DNA extracts for the presence of the Y pestis-specific pla gene on the pPCP1 plasmid using primers and standards from an established assay, enriched the DNA, and then sequenced it. We reconstructed draft genomes of the infectious Y pestis strains, compared them with a database of genomes from 131 Y pestis strains from the second and third pandemics, and constructed a maximum likelihood phylogenetic tree. Findings: Radiocarbon dating of both individuals (A120 to 533 AD [plus or minus 98 years]; A76 to 504 AD [plus or minus 61 years]) places them in the timeframe of the first pandemic. Our phylogeny contains a novel branch (100% bootstrap at all relevant nodes) leading to the two Justinian samples. This branch has no known contemporary representatives, and thus is either extinct or unsampled in wild rodent reservoirs. The Justinian branch is interleaved between two extant groups, 0.ANT1 and 0.ANT2, and is distant from strains associated with the second and third pandemics. Interpretation: We conclude that the Y pestis lineages that caused the Plague of Justinian and the Black Death 800 years later were independent emergences from rodents into human beings. These results show that rodent species worldwide represent important reservoirs for the repeated emergence of diverse lineages of Y pestis into human
- Published
- 2014
11. Reconsideration of bone postmortem interval estimation by UV-induced autofluorescence
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Hoke, N., primary, Grigat, A., additional, Grupe, G., additional, and Harbeck, M., additional
- Published
- 2013
- Full Text
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12. Römisches Orbitaimplantat?
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Rohrbach, J., additional, Harbeck, M., additional, Holzhauser, P., additional, Tekeva-Rohrbach, C., additional, Mach, M., additional, and Codreanu-Windauer, S., additional
- Published
- 2012
- Full Text
- View/download PDF
13. Phthalocyanine as Sensitive Coatings for QCM Sensors-Experimental and Computational Approaches
- Author
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Erbahar, D. D., primary, Harbeck, M., additional, Gürol, I., additional, Musluoğlu, E., additional, Öztürk, Z. Z., additional, Berber, S., additional, and Gouma, Perena, additional
- Published
- 2011
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- View/download PDF
14. Organophosphate sensing with vic-dioximes using QCM sensors
- Author
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Sen, Z., primary, Gurol, I., additional, Gumus, G., additional, Musluoglu, E., additional, Harbeck, M., additional, Ahsen, V., additional, and Ozturk, Z.Z., additional
- Published
- 2010
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- View/download PDF
15. Synthetic Analogs of FTY720 [2-Amino-2-(2-[4-octylphenyl]ethyl)-1,3-propanediol] Differentially Regulate Pulmonary Vascular Permeability in Vivo and in Vitro
- Author
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Camp, S. M., primary, Bittman, R., additional, Chiang, E. T., additional, Moreno-Vinasco, L., additional, Mirzapoiazova, T., additional, Sammani, S., additional, Lu, X., additional, Sun, C., additional, Harbeck, M., additional, Roe, M., additional, Natarajan, V., additional, Garcia, J. G. N., additional, and Dudek, S.M., additional
- Published
- 2009
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16. Synthetic Analogues of FTY720 Regulate Pulmonary Vascular PermeabilityIn VivoandIn Vitro.
- Author
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Dudek, SM, primary, Camp, SM, additional, Bittman, R, additional, Chiang, ET, additional, Moreno-Vinasco, L, additional, Mirzapoiazova, T, additional, Sammani, S, additional, Lu, X, additional, Sun, C, additional, Harbeck, M, additional, Roe, M, additional, Natarajan, V, additional, and Garcia, JG, additional
- Published
- 2009
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17. Phthalocyanine based sensors for detection of pesticides in liquid and their surface morphology investigation.
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Harbeck, M., Erbahar, D.D., Gurol, I., and Musluoglu, E.
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- 2011
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18. Chemical sensing of explosives in water.
- Author
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Harbeck, M., Erbahar, D.D., Gu?rol, I., and Musluog?lu, E.
- Published
- 2010
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- View/download PDF
19. Organophosphate sensing with vic-dioximes using QCM sensors.
- Author
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S?en, Z., Gu?rol, I., Gu?mu?s?, G., Musluog?lu, E., Harbeck, M., Arisen, V., and O?ztu?rk, Z.Z.
- Published
- 2010
- Full Text
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20. Expression of insulin receptor mRNA and insulin receptor substrate 1 in pancreatic islet beta-cells
- Author
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Harbeck, M. C., primary, Louie, D. C., additional, Howland, J., additional, Wolf, B. A., additional, and Rothenberg, P. L., additional
- Published
- 1996
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21. Purification and identification of bovine liver gamma-carboxylase.
- Author
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Berkner, K L, primary, Harbeck, M, additional, Lingenfelter, S, additional, Bailey, C, additional, Sanders-Hinck, C M, additional, and Suttie, J W, additional
- Published
- 1992
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22. OBJECT RECOGNITION BY A ROBUST MATCHING TECHNIQUE.
- Author
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SALZBRUNN, R., NIEMANN, H., HARBECK, M., and WINZEN, A.
- Subjects
OBJECT recognition (Computer vision) ,ROBUST control ,MATCHING theory ,IMAGE segmentation ,CAMCORDERS - Published
- 1993
23. Tyrosine dephosphorylation and deactivation of insulin receptor substrate-1 by protein-tyrosine phosphatase 1B. Possible facilitation by the formation of a ternary complex with the Grb2 adaptor protein.
- Author
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Goldstein, B J, Bittner-Kowalczyk, A, White, M F, and Harbeck, M
- Abstract
Regulation of the steady-state tyrosine phosphorylation of the insulin receptor and its postreceptor substrates are essential determinants of insulin signal transduction. However, little is known regarding the molecular interactions that influence the balance of these processes, especially the phosphorylation state of postinsulin receptor substrates, such as insulin receptor substrate-1 (IRS-1). The specific activity of four candidate protein-tyrosine phosphatases (protein-tyrosine phosphatase 1B (PTP1B), SH2 domain-containing PTPase-2 (SHP-2), leukocyte common antigen-related (LAR), and leukocyte antigen-related phosphatase) (LRP) toward IRS-1 dephosphorylation was studied using recombinant proteins in vitro. PTP1B exhibited the highest specific activity (percentage dephosphorylated per microg per min), and the enzyme activities varied over a range of 5.5 x 10(3). When evaluated as a ratio of activity versus IRS-1 to that versus p-nitrophenyl phosphate, PTP1B remained significantly more active by 3.1-293-fold, respectively. Overlay blots with recombinant Src homology 2 domains of IRS-1 adaptor proteins showed that the loss of IRS-1 binding of Crk, GRB2, SHP-2, and the p85 subunit of phosphatidylinositol 3'-kinase paralleled the rate of overall IRS-1 dephosphorylation. Further studies revealed that the adaptor protein GRB2 strongly promoted the formation of a stable protein complex between tyrosine-phosphorylated IRS-1 and catalytically inactive PTP1B, increasing their co-immunoprecipitation from an equimolar solution by 13.5 +/- 3.3-fold (n = 7; p < 0.01). Inclusion of GRB2 in a reaction mixture of IRS-1 and active PTP1B also increased the overall rate of IRS-1 tyrosine dephosphorylation by 2.7-3.9-fold (p < 0.01). These results provide new insight into novel molecular interactions involving PTP1B and GRB2 that may influence the steady-state capacity of IRS-1 to function as a phosphotyrosine scaffold and possibly affect the balance of postreceptor insulin signaling.
- Published
- 2000
24. Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes
- Author
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Spyrou M., Keller M., Tukhbatova R., Scheib C., Nelson E., Andrades Valtueña A., Neumann G., Walker D., Alterauge A., Carty N., Cessford C., Fetz H., Gourvennec M., Hartle R., Henderson M., von Heyking K., Inskip S., Kacki S., Key F., Knox E., Later C., Maheshwari-Aplin P., Peters J., Robb J., Schreiber J., Kivisild T., Castex D., Lösch S., Harbeck M., Herbig A., Bos K., Krause J., Spyrou M., Keller M., Tukhbatova R., Scheib C., Nelson E., Andrades Valtueña A., Neumann G., Walker D., Alterauge A., Carty N., Cessford C., Fetz H., Gourvennec M., Hartle R., Henderson M., von Heyking K., Inskip S., Kacki S., Key F., Knox E., Later C., Maheshwari-Aplin P., Peters J., Robb J., Schreiber J., Kivisild T., Castex D., Lösch S., Harbeck M., Herbig A., Bos K., and Krause J.
- Abstract
© 2019, The Author(s). The second plague pandemic, caused by Yersinia pestis, devastated Europe and the nearby regions between the 14th and 18th centuries AD. Here we analyse human remains from ten European archaeological sites spanning this period and reconstruct 34 ancient Y. pestis genomes. Our data support an initial entry of the bacterium through eastern Europe, the absence of genetic diversity during the Black Death, and low within-outbreak diversity thereafter. Analysis of post-Black Death genomes shows the diversification of a Y. pestis lineage into multiple genetically distinct clades that may have given rise to more than one disease reservoir in, or close to, Europe. In addition, we show the loss of a genomic region that includes virulence-related genes in strains associated with late stages of the pandemic. The deletion was also identified in genomes connected with the first plague pandemic (541–750 AD), suggesting a comparable evolutionary trajectory of Y. pestis during both events.
25. Segmentation of lines and arcs and its application for depth recovery
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Bess, R., primary, Paulus, D., additional, and Harbeck, M., additional
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26. Segmentation of lines and arcs and its application for depth recovery.
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Bess, R., Paulus, D., and Harbeck, M.
- Published
- 1997
- Full Text
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27. The archaeology of the Second Plague Pandemic : an overview of French Funerary contexts
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Bianucci, Raffaella, Kacki, Sacha, Anthropologie bio-culturelle, Droit, Ethique et Santé (ADES), Aix Marseille Université (AMU)-EFS ALPES MEDITERRANEE-Centre National de la Recherche Scientifique (CNRS), De la Préhistoire à l'Actuel : Culture, Environnement et Anthropologie (PACEA), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Harbeck, M. and Von Heyking, K. and Schwarzberg, H., PACEA, UMR5199, and Harbeck, M. and Von Heyking, K. and Schwarzberg, H.
- Subjects
[SHS.ARCHEO] Humanities and Social Sciences/Archaeology and Prehistory ,[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and Prehistory ,[SHS] Humanities and Social Sciences ,ComputingMilieux_MISCELLANEOUS ,[SHS]Humanities and Social Sciences - Abstract
International audience
- Published
- 2012
28. Between Raetia Secunda and the dutchy of Bavaria: Exploring patterns of human movement and diet.
- Author
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Velte M, Czermak A, Grigat A, Haas-Gebhard B, Gairhos A, Toncala A, Trautmann B, Haberstroh J, Päffgen B, von Heyking K, Lösch S, Burger J, and Harbeck M
- Subjects
- Male, Middle Aged, Humans, Female, Diet history, Skull anatomy & histology, Burial history, Carbon Isotopes, Emigration and Immigration, Tooth
- Abstract
During the transition from Late Antiquity to the Middle Ages, the Roman Empire dissolved in the West and medieval empires were founded. There has been much discussion about the role that migration played in this transition. This is especially true for the formation of the Baiuvariian tribe and the founding of this tribal dukedom, which took place from the 5th to the 6th century in what is now Southern Bavaria (Germany). In this study, we aimed to determine the extent of immigration during the beginning of this transformation and to shed further light on its character. To achieve this goal, we analyzed stable isotope values of strontium, carbon, and nitrogen from the teeth and bones of over 150 human remains from Southern Germany, dating from around 500 AD. This group of individuals included women with cranial modifications (ACD) which can be found sporadically in the burial grounds of this period. Our results showed an above-average migration rate for both men and women in the second half of the 5th century. They also indicate that a foreign background may also be assumed for the women with ACD. The demonstrably different origins of the immigrants from isotopically diverse regions, and the identification of local differences in detectable migration rate, as well as indication for different timing of residential changes, highlight the complexity of immigration processes and the need for more studies at the regional level., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Velte et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
- Full Text
- View/download PDF
29. On the premises of mixing models to define local bioavailable 87 Sr/ 86 Sr ranges in archaeological contexts.
- Author
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Toncala A, Trautmann B, Velte M, Kropf E, McGlynn G, Peters J, and Harbeck M
- Subjects
- Animals, Germany, Humans, Isotopes, Strontium, Archaeology, Strontium Isotopes analysis
- Abstract
In archaeological mobility studies, non-local humans and animals can be identified by means of stable strontium isotope analysis. However, defining the range of local
87 Sr/86 Sr ratios is prerequisite. To achieve this goal, proxy-based mixing models have recently been proposed using87 Sr/86 Sr ratios measured in modern local vegetation, water and soil samples. Our study complements earlier efforts by introducing archaeological animal bones as an additional proxy. We then evaluate the different modelling approaches by contrasting proxy-results generated for the county of Erding (Upper Bavaria, Germany) with a comprehensive set of strontium measurements obtained from tooth enamel of late antique and early medieval human individuals (n = 49) from the same micro-region. We conclude that current mixing models based on environmental proxies clearly underestimate the locally bioavailable87 Sr/86 Sr ratios due to the limited sample size of modern environmental specimens and a suit of imponderables inherent to efforts modelling complex geobiological processes. In sum, currently available mixing models are deemed inadequate and can therefore not be recommended., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020. Published by Elsevier B.V.)- Published
- 2020
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- View/download PDF
30. Kinship-based social inequality in Bronze Age Europe.
- Author
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Mittnik A, Massy K, Knipper C, Wittenborn F, Friedrich R, Pfrengle S, Burri M, Carlichi-Witjes N, Deeg H, Furtwängler A, Harbeck M, von Heyking K, Kociumaka C, Kucukkalipci I, Lindauer S, Metz S, Staskiewicz A, Thiel A, Wahl J, Haak W, Pernicka E, Schiffels S, Stockhammer PW, and Krause J
- Subjects
- Anthropology, DNA, Ancient, Female, Germany, History, Ancient, Humans, Male, Pedigree, Polymorphism, Single Nucleotide, Family Characteristics history, Social Class history
- Abstract
Revealing and understanding the mechanisms behind social inequality in prehistoric societies is a major challenge. By combining genome-wide data, isotopic evidence, and anthropological and archaeological data, we have gone beyond the dominating supraregional approaches in archaeogenetics to shed light on the complexity of social status, inheritance rules, and mobility during the Bronze Age. We applied a deep microregional approach and analyzed genome-wide data of 104 human individuals deriving from farmstead-related cemeteries from the Late Neolithic to the Middle Bronze Age in southern Germany. Our results reveal individual households, lasting several generations, that consisted of a high-status core family and unrelated low-status individuals; a social organization accompanied by patrilocality and female exogamy; and the stability of this system over 700 years., (Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2019
- Full Text
- View/download PDF
31. Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes.
- Author
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Spyrou MA, Keller M, Tukhbatova RI, Scheib CL, Nelson EA, Andrades Valtueña A, Neumann GU, Walker D, Alterauge A, Carty N, Cessford C, Fetz H, Gourvennec M, Hartle R, Henderson M, von Heyking K, Inskip SA, Kacki S, Key FM, Knox EL, Later C, Maheshwari-Aplin P, Peters J, Robb JE, Schreiber J, Kivisild T, Castex D, Lösch S, Harbeck M, Herbig A, Bos KI, and Krause J
- Subjects
- Archaeology methods, DNA, Bacterial chemistry, DNA, Bacterial classification, Europe, Eastern epidemiology, Fossils, Humans, Phylogeny, Phylogeography, Plague microbiology, Polymorphism, Single Nucleotide, Time Factors, Virulence genetics, Yersinia pestis pathogenicity, DNA, Bacterial genetics, Genome, Bacterial genetics, High-Throughput Nucleotide Sequencing methods, Pandemics, Plague epidemiology, Yersinia pestis genetics
- Abstract
The second plague pandemic, caused by Yersinia pestis, devastated Europe and the nearby regions between the 14
th and 18th centuries AD. Here we analyse human remains from ten European archaeological sites spanning this period and reconstruct 34 ancient Y. pestis genomes. Our data support an initial entry of the bacterium through eastern Europe, the absence of genetic diversity during the Black Death, and low within-outbreak diversity thereafter. Analysis of post-Black Death genomes shows the diversification of a Y. pestis lineage into multiple genetically distinct clades that may have given rise to more than one disease reservoir in, or close to, Europe. In addition, we show the loss of a genomic region that includes virulence-related genes in strains associated with late stages of the pandemic. The deletion was also identified in genomes connected with the first plague pandemic (541-750 AD), suggesting a comparable evolutionary trajectory of Y. pestis during both events.- Published
- 2019
- Full Text
- View/download PDF
32. Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750).
- Author
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Keller M, Spyrou MA, Scheib CL, Neumann GU, Kröpelin A, Haas-Gebhard B, Päffgen B, Haberstroh J, Ribera I Lacomba A, Raynaud C, Cessford C, Durand R, Stadler P, Nägele K, Bates JS, Trautmann B, Inskip SA, Peters J, Robb JE, Kivisild T, Castex D, McCormick M, Bos KI, Harbeck M, Herbig A, and Krause J
- Subjects
- Europe epidemiology, History, Medieval, Humans, Plague epidemiology, Plague history, Yersinia pestis pathogenicity, Disease Outbreaks history, Genome, Bacterial, Plague microbiology, Yersinia pestis genetics
- Abstract
The first historically documented pandemic caused by Yersinia pestis began as the Justinianic Plague in 541 within the Roman Empire and continued as the so-called First Pandemic until 750. Although paleogenomic studies have previously identified the causative agent as Y. pestis , little is known about the bacterium's spread, diversity, and genetic history over the course of the pandemic. To elucidate the microevolution of the bacterium during this time period, we screened human remains from 21 sites in Austria, Britain, Germany, France, and Spain for Y. pestis DNA and reconstructed eight genomes. We present a methodological approach assessing single-nucleotide polymorphisms (SNPs) in ancient bacterial genomes, facilitating qualitative analyses of low coverage genomes from a metagenomic background. Phylogenetic analysis on the eight reconstructed genomes reveals the existence of previously undocumented Y. pestis diversity during the sixth to eighth centuries, and provides evidence for the presence of multiple distinct Y. pestis strains in Europe. We offer genetic evidence for the presence of the Justinianic Plague in the British Isles, previously only hypothesized from ambiguous documentary accounts, as well as the parallel occurrence of multiple derived strains in central and southern France, Spain, and southern Germany. Four of the reported strains form a polytomy similar to others seen across the Y. pestis phylogeny, associated with the Second and Third Pandemics. We identified a deletion of a 45-kb genomic region in the most recent First Pandemic strains affecting two virulence factors, intriguingly overlapping with a deletion found in 17th- to 18th-century genomes of the Second Pandemic., Competing Interests: The authors declare no conflict of interest., (Copyright © 2019 the Author(s). Published by PNAS.)
- Published
- 2019
- Full Text
- View/download PDF
33. Novel Mechanism for Nicotinamide Phosphoribosyltransferase Inhibition of TNF-α-mediated Apoptosis in Human Lung Endothelial Cells.
- Author
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Oita RC, Camp SM, Ma W, Ceco E, Harbeck M, Singleton P, Messana J, Sun X, Wang T, and Garcia JGN
- Subjects
- Biomarkers metabolism, Cytokines pharmacology, Cytoprotection drug effects, Endothelial Cells drug effects, Humans, NAD metabolism, Nicotinamide Phosphoribosyltransferase pharmacology, Recombinant Proteins pharmacology, Apoptosis drug effects, Cytokines metabolism, Endothelial Cells enzymology, Lung pathology, Nicotinamide Phosphoribosyltransferase metabolism, Tumor Necrosis Factor-alpha pharmacology
- Abstract
Nicotinamide phosphoribosyltransferase (NAMPT) exists as both intracellular NAMPT and extracellular NAMPT (eNAMPT) proteins. eNAMPT is secreted into the blood and functions as a cytokine/enzyme (cytozyme) that activates NF-κB signaling via ligation of Toll-like receptor 4 (TLR4), further serving as a biomarker for inflammatory lung disorders such as acute respiratory distress syndrome. In contrast, intracellular NAMPT is involved in nicotinamide mononucleotide synthesis and has been implicated in the regulation of cellular apoptosis, although the exact mechanisms for this regulation are poorly understood. We examined the role of NAMPT in TNF-α-induced human lung endothelial cell (EC) apoptosis and demonstrated that reduced NAMPT expression (siRNA) increases EC susceptibility to TNF-α-induced apoptosis as reflected by PARP-1 cleavage and caspase-3 activation. In contrast, overexpression of NAMPT served to reduce degrees of TNF-α-induced EC apoptosis. Inhibition of nicotinamide mononucleotide synthesis by FK866 (a selective NAMPT enzymatic inhibitor) failed to alter TNF-α-induced human lung EC apoptosis, suggesting that NAMPT-dependent NAD
+ generation is unlikely to be involved in regulation of TNF-α-induced EC apoptosis. We next confirmed that TNF-α-induced EC apoptosis is attributable to NAMPT secretion into the EC culture media and subsequent eNAMPT ligation of TLR4 on the EC membrane surface. Silencing of NAMPT expression, direct neutralization of secreted eNAMPT by an NAMPT-specific polyclonal antibody (preventing TLR4 ligation), or direct TLR4 antagonism all served to significantly increase EC susceptibility to TNF-α-induced EC apoptosis. Together, these studies provide novel insights into NAMPT contributions to lung inflammatory events and to novel mechanisms of EC apoptosis regulation.- Published
- 2018
- Full Text
- View/download PDF
34. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria.
- Author
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Veeramah KR, Rott A, Groß M, van Dorp L, López S, Kirsanow K, Sell C, Blöcher J, Wegmann D, Link V, Hofmanová Z, Peters J, Trautmann B, Gairhos A, Haberstroh J, Päffgen B, Hellenthal G, Haas-Gebhard B, Harbeck M, and Burger J
- Subjects
- Archaeology, DNA, Ancient, Female, Genetic Variation, Germany, Haplotypes, History, Medieval, Humans, Phenotype, Skull anatomy & histology, Whole Genome Sequencing, Genetics, Population, Genome, Human, Genomics methods, Human Migration, Skull metabolism, White People genetics
- Abstract
Modern European genetic structure demonstrates strong correlations with geography, while genetic analysis of prehistoric humans has indicated at least two major waves of immigration from outside the continent during periods of cultural change. However, population-level genome data that could shed light on the demographic processes occurring during the intervening periods have been absent. Therefore, we generated genomic data from 41 individuals dating mostly to the late 5th/early 6th century AD from present-day Bavaria in southern Germany, including 11 whole genomes (mean depth 5.56×). In addition we developed a capture array to sequence neutral regions spanning a total of 5 Mb and 486 functional polymorphic sites to high depth (mean 72×) in all individuals. Our data indicate that while men generally had ancestry that closely resembles modern northern and central Europeans, women exhibit a very high genetic heterogeneity; this includes signals of genetic ancestry ranging from western Europe to East Asia. Particularly striking are women with artificial skull deformations; the analysis of their collective genetic ancestry suggests an origin in southeastern Europe. In addition, functional variants indicate that they also differed in visible characteristics. This example of female-biased migration indicates that complex demographic processes during the Early Medieval period may have contributed in an unexpected way to shape the modern European genetic landscape. Examination of the panel of functional loci also revealed that many alleles associated with recent positive selection were already at modern-like frequencies in European populations ∼1,500 years ago., Competing Interests: The authors declare no conflict of interest., (Copyright © 2018 the Author(s). Published by PNAS.)
- Published
- 2018
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35. Early medieval stone-lined graves in Southern Germany: analysis of an emerging noble class.
- Author
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Rott A, Turner N, Scholz U, von Heyking K, Immler F, Peters J, Haberstroh J, and Harbeck M
- Subjects
- Adult, Aged, Archaeology, Bone and Bones chemistry, Child, Preschool, Family, Female, Germany, History, Medieval, Humans, Male, Microsatellite Repeats genetics, Middle Aged, Radiometric Dating, Young Adult, Burial history, Cemeteries history, Social Class history
- Abstract
Objectives: Stone-lined graves, which first appear in Bavarian territory during the 7
th century AD, are assumed to be tombs of emerging nobility. While previous research on stone-lined grave goods supports their status as elite burials, an important factor defining nobility-kinship-has not been examined so far., Materials and Methods: Morphological analysis of the commingled skeletal remains of 21 individuals from three archaeological sites was carried out. Radiocarbon dating was conducted on these individuals to gain information on usage intervals of these graves. To test whether stone-lined graves can be considered family graves, analyses of mitochondrial HVR I, Y-chromosomal and autosomal STRs were carried out., Results: Morphological examination revealed a surplus of males buried in stone-lined graves and radiocarbon dating points to usage of the tombs for several generations. According to aDNA analysis, kinship can be assumed both between and within stone-lined graves., Discussion: Taken together, these results hint at burials of family members with high social status being inhumed at the same site, in some cases even the same grave, for several generations. They also suggest, for the first time, that an early medieval linear cemetery was structured according to biological kinship., (© 2017 Wiley Periodicals, Inc.)- Published
- 2017
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36. A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim.
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Feldman M, Harbeck M, Keller M, Spyrou MA, Rott A, Trautmann B, Scholz HC, Päffgen B, Peters J, McCormick M, Bos K, Herbig A, and Krause J
- Subjects
- Base Sequence, DNA, Bacterial genetics, Genetic Variation, Genome, Bacterial, High-Throughput Nucleotide Sequencing methods, Humans, Pandemics, Virulence genetics, DNA, Ancient analysis, Plague microbiology, Yersinia pestis genetics
- Abstract
The Justinianic Plague, which started in the sixth century and lasted to the mid eighth century, is thought to be the first of three historically documented plague pandemics causing massive casualties. Historical accounts and molecular data suggest the bacterium Yersinia pestis as its etiological agent. Here we present a new high-coverage (17.9-fold) Y. pestis genome obtained from a sixth-century skeleton recovered from a southern German burial site close to Munich. The reconstructed genome enabled the detection of 30 unique substitutions as well as structural differences that have not been previously described. We report indels affecting a lacl family transcription regulator gene as well as nonsynonymous substitutions in the nrdE, fadJ, and pcp genes, that have been suggested as plague virulence determinants or have been shown to be upregulated in different models of plague infection. In addition, we identify 19 false positive substitutions in a previously published lower-coverage Y. pestis genome from another archaeological site of the same time period and geographical region that is otherwise genetically identical to the high-coverage genome sequence reported here, suggesting low-genetic diversity of the plague during the sixth century in rural southern Germany., (© The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2016
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37. Poly(3-Methylthiophene) Thin Films Deposited Electrochemically on QCMs for the Sensing of Volatile Organic Compounds.
- Author
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Öztürk S, Kösemen A, Şen Z, Kılınç N, and Harbeck M
- Abstract
Poly(3-methylthiophene) (PMeT) thin films were electrochemically deposited on quartz crystal microbalance QCM transducers to investigate their volatile organic compound (VOC) sensing properties depending on ambient conditions. Twelve different VOCs including alcohols, ketones, chlorinated compounds, amines, and the organosphosphate dimethyl methylphosphonate (DMMP) were used as analytes. The responses of the chemical sensors against DMMP were the highest among the tested analytes; thus, fabricated chemical sensors based on PMeT can be evaluated as potential candidates for selectively detecting DMMP. Generally, detection limits in the low ppm range could be achieved. The gas sensing measurements were recorded at various humid air conditions to investigate the effects of the humidity on the gas sensing properties. The sensing performance of the chemical sensors was slightly reduced in the presence of humidity in ambient conditions. While a decrease in sensitivity was observed for humidity levels up to 50% r.h., the sensitivity was nearly unaffected for higher humidity levels and a reliable detection of the VOCs and DMMP was possible with detection limits in the low ppm range.
- Published
- 2016
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38. Genotyping Yersinia pestis in Historical Plague: Evidence for Long-Term Persistence of Y. pestis in Europe from the 14th to the 17th Century.
- Author
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Seifert L, Wiechmann I, Harbeck M, Thomas A, Grupe G, Projahn M, Scholz HC, and Riehm JM
- Subjects
- Europe, History, 15th Century, History, 16th Century, History, 17th Century, History, Medieval, Humans, Male, Phylogeny, Plague genetics, Plague microbiology, Polymerase Chain Reaction, Polymorphism, Single Nucleotide genetics, Genotyping Techniques, Plague history, Yersinia pestis genetics
- Abstract
Ancient DNA (aDNA) recovered from plague victims of the second plague pandemic (14th to 17th century), excavated from two different burial sites in Germany, and spanning a time period of more than 300 years, was characterized using single nucleotide polymorphism (SNP) analysis. Of 30 tested skeletons 8 were positive for Yersinia pestis-specific nucleic acid, as determined by qPCR targeting the pla gene. In one individual (MP-19-II), the pla copy number in DNA extracted from tooth pulp was as high as 700 gene copies/μl, indicating severe generalized infection. All positive individuals were identical in all 16 SNP positions, separating phylogenetic branches within nodes N07_N10 (14 SNPs), N07_N08 (SNP s19) and N06_N07 (s545), and were highly similar to previously investigated plague victims from other European countries. Thus, beside the assumed continuous reintroduction of Y. pestis from central Asia in multiple waves during the second pandemic, long-term persistence of Y. pestis in Europe in a yet unknown reservoir host has also to be considered.
- Published
- 2016
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39. United in death-related by blood? Genetic and archeometric analyses of skeletal remains from the neolithic earthwork Bruchsal-Aue.
- Author
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Keller M, Rott A, Hoke N, Schwarzberg H, Regner-Kamlah B, Harbeck M, and Wahl J
- Subjects
- Adult, Anthropology, Physical, Archaeology, Child, Child, Preschool, DNA, Mitochondrial analysis, Female, Germany, Humans, Infant, Isotopes analysis, Male, Middle Aged, Bone and Bones chemistry, Chromosomes, Human, Y genetics, DNA, Mitochondrial genetics, Microsatellite Repeats genetics
- Abstract
Objectives: Straight next to a segment of the outer ditch of the Late Neolithic Michelsberg Culture earthwork of Bruchsal-Aue in SW-Germany (ca. 4250-3650 calBC), a multiple burial of eight individuals (two male adults and six children) plus a subsequent child burial was excavated. In this study, we applied a multidisciplinary approach to elucidate interpersonal relationships and life histories within this collective., Materials and Methods: To determine the identity of this collective, we performed aDNA analyses in addition to osteological examination using HVR I plus Y-chromosomal and autosomal STR profiling to find evidence for kinship relations. Strontium isotopic analyses were used to reconsider migrational behavior. To find evidence for a specific social affiliation, the individual diet was reconstructed by performing nitrogen and carbon isotopic analyses. Furthermore, radiocarbon-dating was carried out to integrate the burial context into an absolute timeframe. Two nearby single burials were included in the analyses for comparison., Results: Because of a shared HVR I haplotype, three pairs of individuals were most likely linked by kinship, and statistical testing on autosomal STR profiles shows a high probability for the pair of two men being brothers. Although it cannot be excluded, isotopic data gave no clear proof for migration. A rather poor health status is indicated by skeletal stress markers even though the isotope data attest to a diet rich in meat and fish., Discussion: Although clear kinship relations among the infants remain unconfirmed, a relationship could also be indicated by the positioning of the bodies in the burial pit. Whereas a common cause of death might have been the presupposition for their special treatment, interpersonal relationships were likely the decisive factor for the multiple burial., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2015
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40. Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.
- Author
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Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, Earn DJ, Dewitte S, Rouillard JM, Grupe G, Wiechmann I, Bliska JB, Keim PS, Scholz HC, Holmes EC, and Poinar H
- Subjects
- Africa epidemiology, Animals, Asia epidemiology, Disease Reservoirs, Europe epidemiology, History, Medieval, Humans, Plague epidemiology, Plague genetics, Tooth microbiology, Yersinia pestis isolation & purification, DNA, Bacterial isolation & purification, Pandemics history, Phylogeny, Plague history, Yersinia pestis genetics
- Abstract
Background: Yersinia pestis has caused at least three human plague pandemics. The second (Black Death, 14-17th centuries) and third (19-20th centuries) have been genetically characterised, but there is only a limited understanding of the first pandemic, the Plague of Justinian (6-8th centuries). To address this gap, we sequenced and analysed draft genomes of Y pestis obtained from two individuals who died in the first pandemic., Methods: Teeth were removed from two individuals (known as A120 and A76) from the early medieval Aschheim-Bajuwarenring cemetery (Aschheim, Bavaria, Germany). We isolated DNA from the teeth using a modified phenol-chloroform method. We screened DNA extracts for the presence of the Y pestis-specific pla gene on the pPCP1 plasmid using primers and standards from an established assay, enriched the DNA, and then sequenced it. We reconstructed draft genomes of the infectious Y pestis strains, compared them with a database of genomes from 131 Y pestis strains from the second and third pandemics, and constructed a maximum likelihood phylogenetic tree., Findings: Radiocarbon dating of both individuals (A120 to 533 AD [plus or minus 98 years]; A76 to 504 AD [plus or minus 61 years]) places them in the timeframe of the first pandemic. Our phylogeny contains a novel branch (100% bootstrap at all relevant nodes) leading to the two Justinian samples. This branch has no known contemporary representatives, and thus is either extinct or unsampled in wild rodent reservoirs. The Justinian branch is interleaved between two extant groups, 0.ANT1 and 0.ANT2, and is distant from strains associated with the second and third pandemics., Interpretation: We conclude that the Y pestis lineages that caused the Plague of Justinian and the Black Death 800 years later were independent emergences from rodents into human beings. These results show that rodent species worldwide represent important reservoirs for the repeated emergence of diverse lineages of Y pestis into human populations., Funding: McMaster University, Northern Arizona University, Social Sciences and Humanities Research Council of Canada, Canada Research Chairs Program, US Department of Homeland Security, US National Institutes of Health, Australian National Health and Medical Research Council., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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41. Strategy for sensitive and specific detection of Yersinia pestis in skeletons of the black death pandemic.
- Author
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Seifert L, Harbeck M, Thomas A, Hoke N, Zöller L, Wiechmann I, Grupe G, Scholz HC, and Riehm JM
- Subjects
- Archaeology methods, Bacterial Proteins genetics, DNA, Bacterial genetics, Germany, Humans, Plague epidemiology, Plasmids genetics, Plasminogen Activators genetics, Polymerase Chain Reaction methods, Reproducibility of Results, Sensitivity and Specificity, Switzerland, Bone and Bones microbiology, Plague diagnosis, Yersinia pestis genetics
- Abstract
Yersinia pestis has been identified as the causative agent of the Black Death pandemic in the 14(th) century. However, retrospective diagnostics in human skeletons after more than 600 years are critical. We describe a strategy following a modern diagnostic algorithm and working under strict ancient DNA regime for the identification of medieval human plague victims. An initial screening and DNA quantification assay detected the Y. pestis specific pla gene of the high copy number plasmid pPCP1. Results were confirmed by conventional PCR and sequence analysis targeting both Y. pestis specific virulence plasmids pPCP1 and pMT1. All assays were meticulously validated according to human clinical diagnostics requirements (ISO 15189) regarding efficiency, sensitivity, specificity, and limit of detection (LOD). Assay specificity was 100% tested on 41 clinically relevant bacteria and 29 Y. pseudotuberculosis strains as well as for DNA of 22 Y. pestis strains and 30 previously confirmed clinical human plague samples. The optimized LOD was down to 4 gene copies. 29 individuals from three different multiple inhumations were initially assessed as possible victims of the Black Death pandemic. 7 samples (24%) were positive in the pPCP1 specific screening assay. Confirmation through second target pMT1 specific PCR was successful for 4 of the positive individuals (14%). A maximum of 700 and 560 copies per µl aDNA were quantified in two of the samples. Those were positive in all assays including all repetitions, and are candidates for future continuative investigations such as whole genome sequencing. We discuss that all precautions taken here for the work with aDNA are sufficient to prevent external sample contamination and fulfill the criteria of authenticity. With regard to retrospective diagnostics of a human pathogen and the uniqueness of ancient material we strongly recommend using a careful strategy and validated assays as presented in our study.
- Published
- 2013
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42. Yersinia pestis DNA from skeletal remains from the 6(th) century AD reveals insights into Justinianic Plague.
- Author
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Harbeck M, Seifert L, Hänsch S, Wagner DM, Birdsell D, Parise KL, Wiechmann I, Grupe G, Thomas A, Keim P, Zöller L, Bramanti B, Riehm JM, and Scholz HC
- Subjects
- Base Sequence, Female, Genotype, History, 15th Century, History, 16th Century, History, 17th Century, History, 19th Century, History, 20th Century, History, Medieval, Humans, Male, Molecular Sequence Data, Bone and Bones microbiology, DNA, Bacterial genetics, Pandemics history, Phylogeny, Plague epidemiology, Plague etiology, Plague genetics, Plague history, Plague microbiology, Yersinia pestis genetics
- Abstract
Yersinia pestis, the etiologic agent of the disease plague, has been implicated in three historical pandemics. These include the third pandemic of the 19(th) and 20(th) centuries, during which plague was spread around the world, and the second pandemic of the 14(th)-17(th) centuries, which included the infamous epidemic known as the Black Death. Previous studies have confirmed that Y. pestis caused these two more recent pandemics. However, a highly spirited debate still continues as to whether Y. pestis caused the so-called Justinianic Plague of the 6(th)-8(th) centuries AD. By analyzing ancient DNA in two independent ancient DNA laboratories, we confirmed unambiguously the presence of Y. pestis DNA in human skeletal remains from an Early Medieval cemetery. In addition, we narrowed the phylogenetic position of the responsible strain down to major branch 0 on the Y. pestis phylogeny, specifically between nodes N03 and N05. Our findings confirm that Y. pestis was responsible for the Justinianic Plague, which should end the controversy regarding the etiology of this pandemic. The first genotype of a Y. pestis strain that caused the Late Antique plague provides important information about the history of the plague bacillus and suggests that the first pandemic also originated in Asia, similar to the other two plague pandemics.
- Published
- 2013
- Full Text
- View/download PDF
43. [A Roman orbital implant?].
- Author
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Rohrbach JM, Harbeck M, Holzhauser P, Tekeva-Rohrbach CI, Mach M, and Codreanu-Windauer S
- Subjects
- Adult, History, Ancient, Humans, Male, Paleopathology, Rome, Ophthalmology history, Orbital Implants history
- Abstract
During an excavation in Regensburg/Germany the skeleton of an approximately 20-year-old Roman man was found who was buried in the 3rd/4th century after Christ. A "stone" was found which fitted into the left orbit precisely. After a thorough investigation of the "stone" and with the ophthalmohistorical literature in mind an orbital "implant" as well as a petrified medical paste ("Kollyrium") could be ruled out almost with certainty. Possibly the "stone" served another medical purpose or was used for protection of the eye., (Georg Thieme Verlag KG Stuttgart · New York.)
- Published
- 2012
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44. Research potential and limitations of trace analyses of cremated remains.
- Author
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Harbeck M, Schleuder R, Schneider J, Wiechmann I, Schmahl WW, and Grupe G
- Subjects
- Animals, Carbonates analysis, Cattle, Collagen analysis, DNA analysis, Differential Thermal Analysis, Fluorescence, Forensic Anthropology, Humans, Isotopes analysis, Mass Spectrometry, Polymerase Chain Reaction, Strontium analysis, Temperature, Ultraviolet Rays, X-Ray Diffraction, Bone and Bones chemistry, Cremation
- Abstract
Human cremation is a common funeral practice all over the world and will presumably become an even more popular choice for interment in the future. Mainly for purposes of identification, there is presently a growing need to perform trace analyses such as DNA or stable isotope analyses on human remains after cremation in order to clarify pending questions in civil or criminal court cases. The aim of this study was to experimentally test the potential and limitations of DNA and stable isotope analyses when conducted on cremated remains. For this purpose, tibiae from modern cattle were experimentally cremated by incinerating the bones in increments of 100°C until a maximum of 1000°C was reached. In addition, cremated human remains were collected from a modern crematory. The samples were investigated to determine level of DNA preservation and stable isotope values (C and N in collagen, C and O in the structural carbonate, and Sr in apatite). Furthermore, we assessed the integrity of microstructural organization, appearance under UV-light, collagen content, as well as the mineral and crystalline organization. This was conducted in order to provide a general background with which to explain observed changes in the trace analyses data sets. The goal is to develop an efficacious screening method for determining at which degree of burning bone still retains its original biological signals. We found that stable isotope analysis of the tested light elements in bone is only possible up to a heat exposure of 300°C while the isotopic signal from strontium remains unaltered even in bones exposed to very high temperatures. DNA-analyses seem theoretically possible up to a heat exposure of 600°C but can not be advised in every case because of the increased risk of contamination. While the macroscopic colour and UV-fluorescence of cremated bone give hints to temperature exposure of the bone's outer surface, its histological appearance can be used as a reliable indicator for the assessment of the overall degree of burning., (Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2011
- Full Text
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45. Yersinia pestis DNA sequences in late medieval skeletal finds, Bavaria.
- Author
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Wiechmann I, Harbeck M, and Grupe G
- Subjects
- Adolescent, Adult, Child, Female, Germany, History, Medieval, Humans, Male, Molecular Sequence Data, Plague microbiology, Young Adult, Bone and Bones microbiology, DNA, Bacterial isolation & purification, Plague history, Yersinia pestis isolation & purification
- Published
- 2010
- Full Text
- View/download PDF
46. Soft tissue removal by maceration and feeding of Dermestes sp.: impact on morphological and biomolecular analyses of dental tissues in forensic medicine.
- Author
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Offele D, Harbeck M, Dobberstein RC, von Wurmb-Schwark N, and Ritz-Timme S
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Animals, Caustics, Child, DNA isolation & purification, DNA Degradation, Necrotic, Dental Caries pathology, Dental Plaque pathology, Dentin drug effects, Dentin pathology, Electrophoresis, Agar Gel, Enzymes, Humans, Lipids, Middle Aged, Papain, Peptide Hydrolases, Polymerase Chain Reaction, Polyphosphates, Sodium Hydroxide, Surface-Active Agents, Tooth Root drug effects, Tooth Root pathology, Coleoptera, Feeding Behavior, Forensic Dentistry, Gingiva drug effects, Gingiva pathology
- Abstract
Maceration techniques remove soft tissue by the destruction of biomolecules, but the applied techniques may also affect the morphology and the molecular integrity of the hard tissue itself. The impact of seven different techniques for soft tissue removal on morphological and biomolecular parameters of teeth and dental tissues was systematically examined. All methods tested showed significant changes in dental morphology and in the molecular integrity of DNA and the dental proteins, as revealed by aspartic acid racemisation (AAR). In forensic casework this may have severe impacts on the results of morphological methods (e.g. age estimation based on root translucency) and of biomolecular analyses (e.g. age estimation based on AAR and DNA analysis). Therefore, age estimation based on AAR should not be applied to tissue treated in such a manner, and it is recommended that teeth for analysis should be extracted before soft tissue removal. DNA in the hard tissue seems to be less susceptible to soft tissue removal than proteins, and several of the tested maceration techniques appear not to have a damaging effect on DNA. Generally, the indication for soft tissue removal demands a careful case management to avoid methodological collisions.
- Published
- 2007
- Full Text
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47. Cell physiology of cAMP sensor Epac.
- Author
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Holz GG, Kang G, Harbeck M, Roe MW, and Chepurny OG
- Subjects
- Calcium Signaling physiology, Cell Physiological Phenomena, Cyclic AMP metabolism, Exocytosis physiology, Guanine Nucleotide Exchange Factors metabolism, Ion Channel Gating physiology, Ion Channels physiology, Signal Transduction physiology
- Abstract
Epac is an acronym for the exchange proteins activated directly by cyclic AMP, a family of cAMP-regulated guanine nucleotide exchange factors (cAMPGEFs) that mediate protein kinase A (PKA)-independent signal transduction properties of the second messenger cAMP. Two variants of Epac exist (Epac1 and Epac2), both of which couple cAMP production to the activation of Rap, a small molecular weight GTPase of the Ras family. By activating Rap in an Epac-mediated manner, cAMP influences diverse cellular processes that include integrin-mediated cell adhesion, vascular endothelial cell barrier formation, and cardiac myocyte gap junction formation. Recently, the identification of previously unrecognized physiological processes regulated by Epac has been made possible by the development of Epac-selective cyclic AMP analogues (ESCAs). These cell-permeant analogues of cAMP activate both Epac1 and Epac2, whereas they fail to activate PKA when used at low concentrations. ESCAs such as 8-pCPT-2'-O-Me-cAMP and 8-pMeOPT-2'-O-Me-cAMP are reported to alter Na(+), K(+), Ca(2+) and Cl(-) channel function, intracellular [Ca(2+)], and Na(+)-H(+) transporter activity in multiple cell types. Moreover, new studies examining the actions of ESCAs on neurons, pancreatic beta cells, pituitary cells and sperm demonstrate a major role for Epac in the stimulation of exocytosis by cAMP. This topical review provides an update concerning novel PKA-independent features of cAMP signal transduction that are likely to be Epac-mediated. Emphasized is the emerging role of Epac in the cAMP-dependent regulation of ion channel function, intracellular Ca(2+) signalling, ion transporter activity and exocytosis.
- Published
- 2006
- Full Text
- View/download PDF
48. [Degradation of biomolecules in bones: effects of the biological forensics as an example of the stability of isotope ratios in collagen].
- Author
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Harbeck M, Dobberstein R, Ritz-Timme S, Schröder I, and Grupe G
- Subjects
- Half-Life, Hot Temperature, Humans, Bone and Bones chemistry, Carbon Radioisotopes analysis, Collagen analysis, Collagen chemistry, Forensic Anthropology methods, Nitrogen Isotopes analysis
- Abstract
Modern bone samples were experimentally degraded by incubation into water at increased temperature and examined in terms of their collagen content, the stable C and N isotopic ratios, and the molar C/N ratio. The same analyses were carried out with archaeological human bone of varying age (300 up to 8000 years). The experimentally degraded samples exhibited changes of the collagen's integrity, which influence the stable isotope ratios. In the case of the archaeological material, a correlation between stable delta13C- and delta15N-values and collagen content could be demonstrated. The molar C:N ratio was no suitable criterion for the assessment of the state of preservation of extractable collagen.
- Published
- 2006
49. Interplay of Ca2+ and cAMP signaling in the insulin-secreting MIN6 beta-cell line.
- Author
-
Landa LR Jr, Harbeck M, Kaihara K, Chepurny O, Kitiphongspattana K, Graf O, Nikolaev VO, Lohse MJ, Holz GG, and Roe MW
- Subjects
- Animals, Cell Line, Cyclic AMP analogs & derivatives, Fluorescence Resonance Energy Transfer, Fluorescent Dyes metabolism, Glucose metabolism, Guanine Nucleotide Exchange Factors genetics, Guanine Nucleotide Exchange Factors metabolism, Hypoglycemic Agents metabolism, Mice, Potassium Chloride metabolism, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Second Messenger Systems physiology, Tetraethylammonium metabolism, Tolbutamide metabolism, Calcium metabolism, Cyclic AMP metabolism, Insulin metabolism, Islets of Langerhans cytology, Islets of Langerhans metabolism
- Abstract
Ca2+ and cAMP are important second messengers that regulate multiple cellular processes. Although previous studies have suggested direct interactions between Ca2+ and cAMP signaling pathways, the underlying mechanisms remain unresolved. In particular, direct evidence for Ca2+-regulated cAMP production in living cells is incomplete. Genetically encoded fluorescence resonance energy transfer-based biosensors have made possible real-time imaging of spatial and temporal gradients of intracellular cAMP concentration in single living cells. Here, we used confocal microscopy, fluorescence resonance energy transfer, and insulin-secreting MIN6 cells expressing Epac1-camps, a biosynthetic unimolecular cAMP indicator, to better understand the role of intracellular Ca2+ in cAMP production. We report that depolarization with high external K+, tolbutamide, or glucose caused a rapid increase in cAMP that was dependent on extracellular Ca2+ and inhibited by nitrendipine, a Ca2+ channel blocker, or 2',5'-dideoxyadenosine, a P-site antagonist of transmembrane adenylate cyclases. Stimulation of MIN6 cells with glucose in the presence of tetraethylammonium chloride generated concomitant Ca2+ and cAMP oscillations that were abolished in the absence of extracellular Ca2+ and blocked by 2',5'-dideoxyadenosine or 3-isobutyl-1-methylxanthine, an inhibitor of phosphodiesterase. Simultaneous measurements of Ca2+ and cAMP concentrations with Fura-2 and Epac1-camps, respectively, revealed a close temporal and causal interrelationship between the increases in cytoplasmic Ca2+ and cAMP levels following membrane depolarization. These findings indicate highly coordinated interplay between Ca2+ and cAMP signaling in electrically excitable endocrine cells and suggest that Ca2+-dependent cAMP oscillations are derived from an increase in adenylate cyclase activity and periodic activation and inactivation of cAMP-hydrolyzing phosphodiesterase.
- Published
- 2005
- Full Text
- View/download PDF
50. A cAMP and Ca2+ coincidence detector in support of Ca2+-induced Ca2+ release in mouse pancreatic beta cells.
- Author
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Kang G, Chepurny OG, Rindler MJ, Collis L, Chepurny Z, Li WH, Harbeck M, Roe MW, and Holz GG
- Subjects
- Animals, Calcium pharmacology, Calcium Channels metabolism, Cells, Cultured, Glucagon-Like Peptide 1, Inositol 1,4,5-Trisphosphate Receptors, Male, Mice, Mice, Inbred C57BL, Receptors, Cytoplasmic and Nuclear metabolism, Ryanodine Receptor Calcium Release Channel metabolism, Calcium metabolism, Cyclic AMP metabolism, Cyclic AMP-Dependent Protein Kinases metabolism, Glucagon metabolism, Guanine Nucleotide Exchange Factors metabolism, Islets of Langerhans physiology, Peptide Fragments metabolism, Protein Precursors metabolism
- Abstract
The blood glucose-lowering hormone glucagon-like peptide-1 (GLP-1) stimulates cAMP production, promotes Ca2+ influx, and mobilizes an intracellular source of Ca2+ in pancreatic beta cells. Here we provide evidence that these actions of GLP-1 are functionally related: they reflect a process of Ca2+-induced Ca2+ release (CICR) that requires activation of protein kinase A (PKA) and the Epac family of cAMP-regulated guanine nucleotide exchange factors (cAMPGEFs). In rat insulin-secreting INS-1 cells or mouse beta cells loaded with caged Ca2+ (NP-EGTA), a GLP-1 receptor agonist (exendin-4) is demonstrated to sensitize intracellular Ca2+ release channels to stimulatory effects of cytosolic Ca2+, thereby allowing CICR to be generated by the uncaging of Ca2+ (UV flash photolysis). This sensitizing action of exendin-4 is diminished by an inhibitor of PKA (H-89) or by overexpression of dominant negative Epac. It is reproduced by cell-permeant cAMP analogues that activate PKA (6-Bnz-cAMP) or Epac (8-pCPT-2'-O-Me-cAMP) selectively. Depletion of Ca2+ stores with thapsigargin abolishes CICR, while inhibitors of Ca2+ release channels (ryanodine and heparin) attenuate CICR in an additive manner. Because the uncaging of Ca2+ fails to stimulate CICR in the absence of cAMP-elevating agents, it is concluded that there exists in beta cells a process of second messenger coincidence detection, whereby intracellular Ca2+ release channels (ryanodine receptors, inositol 1,4,5-trisphosphate (IP3) receptors) monitor a simultaneous increase of cAMP and Ca2+ concentrations. We propose that second messenger coincidence detection of this type may explain how GLP-1 interacts with beta cell glucose metabolism to stimulate insulin secretion.
- Published
- 2005
- Full Text
- View/download PDF
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