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We investigate the phenomenon of magnomechanically induced grating (MMIG) within a cavity magnomechanical system, comprising magnons (spins in a ferromagnet, such as yttrium iron garnet), cavity microwave photons, and phonons [\textit{J. Li, S.-Y. Zhu, and G. S. Agarwal, Phys. Rev. Lett. \textbf{121}, 203601 (2018)}]. By applying an external standing wave control, we observe modifications in the transmission profile of a probe light beam, signifying the presence of MMIG. Through numerical analysis, we explore the diffraction intensities of the probe field, examining the impact of interactions between cavity magnons, magnon-phonon interactions, standing wave field strength, and interaction length. MMIG systems leverage the unique properties of magnons, and collective spin excitations with attributes like long coherence times and spin-wave propagation. These distinctive features can be harnessed in MMIG systems for innovative applications in information storage, retrieval, and quantum memories, offering various orders of diffraction grating., Comment: 12 pages, 8 figures

We propose a scheme aimed at achieving spatio-spectral control over spontaneous emission within a four-level atom-light coupling system interacting with optical vortices carrying orbital angular momentum (OAM). The atom comprises a ground level and two excited states coupled with two laser fields, forming a V subsystem where the upper states exclusively decay to a common fourth state via two channels. By investigating various initial states of the atom and considering the presence or absence of quantum interference in spontaneous emission channels, we analyze how the characteristics of the OAM-carrying vortex beam imprint onto the emission spectrum. The interplay between the optical vortex and the quantum system, including its environment modes, induces a wide variety of spatio-spectral behaviour, including two-dimensional spectral-peak narrowing, spectralpeak enhancement, spectral-peak suppression, and spontaneous emission reduction or quenching in the spatial azimuthal plane. Our findings shed light on the dynamics of atom-vortex beam light interactions and offer insights into the manipulation of emission properties at the quantum level.

Decentralized optimization strategies are helpful for various applications, from networked estimation to distributed machine learning. This paper studies finite-sum minimization problems described over a network of nodes and proposes a computationally efficient algorithm that solves distributed convex problems and optimally finds the solution to locally non-convex objective functions. In contrast to batch gradient optimization in some literature, our algorithm is on a single-time scale with no extra inner consensus loop. It evaluates one gradient entry per node per time. Further, the algorithm addresses link-level nonlinearity representing, for example, logarithmic quantization of the exchanged data or clipping of the exchanged data bits. Leveraging perturbation-based theory and algebraic Laplacian network analysis proves optimal convergence and dynamics stability over time-varying and switching networks. The time-varying network setup might be due to packet drops or link failures. Despite the nonlinear nature of the dynamics, we prove exact convergence in the face of odd sign-preserving sector-bound nonlinear data transmission over the links. Illustrative numerical simulations further highlight our contributions., Comment: IEEE Transaction on Network Science and Engineering

Decentralized algorithms have gained substantial interest owing to advancements in cloud computing, Internet of Things (IoT), intelligent transportation networks, and parallel processing over sensor networks. The convergence of such algorithms is directly related to specific properties of the underlying network topology. Specifically, the clustering coefficient is known to affect, for example, the controllability/observability and the epidemic growth over networks. In this work, we study the effects of the clustering coefficient on the convergence rate of networked optimization approaches. In this regard, we model the structure of large-scale distributed systems by random scale-free (SF) and clustered scale-free (CSF) networks and compare the convergence rate by tuning the network clustering coefficient. This is done by keeping other relevant network properties (such as power-law degree distribution, number of links, and average degree) unchanged. Monte-Carlo-based simulations are used to compare the convergence rate over many trials of SF graph topologies. Furthermore, to study the convergence rate over real case studies, we compare the clustering coefficient of some real-world networks with the eigenspectrum of the underlying network (as a measure of convergence rate). The results interestingly show higher convergence rate over low-clustered networks. This is significant as one can improve the learning rate of many existing decentralized machine-learning scenarios by tuning the network clustering., Comment: SNAM Journal

Optical adiabatons are specific shape-invariant pulse pairs propagating at the reduced group velocity and without optical absorption in the medium. The purpose of this study is to analyze and demonstrate adiabaton formation in many level atomic systems. Here we focus on the analysis of five level M-type and double tripod systems. It is found that M-type atomic systems are prone to intensity dependent group velocity and pulse front steepening which prevents the formation of long range optical adiabatons. In contrast, the double tripod atomic system is quite favorable for the formation of optical adiabatons leading to two different optical field configurations propagating with invariant shape., Comment: Submission to SciPost

We study the asymptotic dynamics of 3D gravity with Rindler boundary conditions both in flat and AdS spacetimes. We do this by using the angular quantization and Hamiltonian reduction of the action to the Wess-Zumino-Witten theory on the boundary. We then rewrite the boundary action as a functional of elements of the asymptotic symmetry group., Comment: 20 pages, v2: typos fixed; clarification and references added, v3: ref. added, v4: clarification and figures added, references updated, matching the published version

Decentralized strategies are of interest for learning from large-scale data over networks. This paper studies learning over a network of geographically distributed nodes/agents subject to quantization. Each node possesses a private local cost function, collectively contributing to a global cost function, which the proposed methodology aims to minimize. In contrast to many existing literature, the information exchange among nodes is quantized. We adopt a first-order computationally-efficient distributed optimization algorithm (with no extra inner consensus loop) that leverages node-level gradient correction based on local data and network-level gradient aggregation only over nearby nodes. This method only requires balanced networks with no need for stochastic weight design. It can handle log-scale quantized data exchange over possibly time-varying and switching network setups. We analyze convergence over both structured networks (for example, training over data-centers) and ad-hoc multi-agent networks (for example, training over dynamic robotic networks). Through analysis and experimental validation, we show that (i) structured networks generally result in a smaller optimality gap, and (ii) logarithmic quantization leads to smaller optimality gap compared to uniform quantization.

Meta-learning involves multiple learners, each dedicated to specific tasks, collaborating in a data-constrained setting. In current meta-learning methods, task learners locally learn models from sensitive data, termed support sets. These task learners subsequently share model-related information, such as gradients or loss values, which is computed using another part of the data termed query set, with a meta-learner. The meta-learner employs this information to update its meta-knowledge. Despite the absence of explicit data sharing, privacy concerns persist. This paper examines potential data leakage in a prominent metalearning algorithm, specifically Model-Agnostic Meta-Learning (MAML). In MAML, gradients are shared between the metalearner and task-learners. The primary objective is to scrutinize the gradient and the information it encompasses about the task dataset. Subsequently, we endeavor to propose membership inference attacks targeting the task dataset containing support and query sets. Finally, we explore various noise injection methods designed to safeguard the privacy of task data and thwart potential attacks. Experimental results demonstrate the effectiveness of these attacks on MAML and the efficacy of proper noise injection methods in countering them.

Motivation: Drug repurposing is a viable solution for reducing the time and cost associated with drug development. However, thus far, the proposed drug repurposing approaches still need to meet expectations. Therefore, it is crucial to offer a systematic approach for drug repurposing to achieve cost savings and enhance human lives. In recent years, using biological network-based methods for drug repurposing has generated promising results. Nevertheless, these methods have limitations. Primarily, the scope of these methods is generally limited concerning the size and variety of data they can effectively handle. Another issue arises from the treatment of heterogeneous data, which needs to be addressed or converted into homogeneous data, leading to a loss of information. A significant drawback is that most of these approaches lack end-to-end functionality, necessitating manual implementation and expert knowledge in certain stages. Results: We propose a new solution, HGTDR (Heterogeneous Graph Transformer for Drug Repurposing), to address the challenges associated with drug repurposing. HGTDR is a three-step approach for knowledge graph-based drug re-purposing: 1) constructing a heterogeneous knowledge graph, 2) utilizing a heterogeneous graph transformer network, and 3) computing relationship scores using a fully connected network. By leveraging HGTDR, users gain the ability to manipulate input graphs, extract information from diverse entities, and obtain their desired output. In the evaluation step, we demonstrate that HGTDR performs comparably to previous methods. Furthermore, we review medical studies to validate our method's top ten drug repurposing suggestions, which have exhibited promising results. We also demon-strated HGTDR's capability to predict other types of relations through numerical and experimental validation, such as drug-protein and disease-protein inter-relations., Comment: The paper has been archived without having permission from all authors. Please withdraw

The protein-ligand binding affinity (PLA) prediction goal is to predict whether or not the ligand could bind to a protein sequence. Recently, in PLA prediction, deep learning has received much attention. Two steps are involved in deep learning-based approaches: feature extraction and task prediction step. Many deep learning-based approaches concentrate on introducing new feature extraction networks or integrating auxiliary knowledge like protein-protein interaction networks or gene ontology knowledge. Then, a task prediction network is designed simply using some fully connected layers. This paper aims to integrate retrieved similar hard protein-ligand pairs in PLA prediction (i.e., task prediction step) using a semi-supervised graph convolutional network (GCN). Hard protein-ligand pairs are retrieved for each input query sample based on the manifold smoothness constraint. Then, a graph is learned automatically in which each node is a protein-ligand pair, and each edge represents the similarity between pairs. In other words, an end-to-end framework is proposed that simultaneously retrieves hard similar samples, learns protein-ligand descriptor, learns the graph topology of the input sample with retrieved similar hard samples (learn adjacency matrix), and learns a semi-supervised GCN to predict the binding affinity (as task predictor). The training step adjusts the parameter values, and in the inference step, the learned model is fine-tuned for each input sample. To evaluate the proposed approach, it is applied to the four well-known PDBbind, Davis, KIBA, and BindingDB datasets. The results show that the proposed method significantly performs better than the comparable approaches., Comment: The paper has been archived without permission from all authors. Please withdraw

We revisit the problem of predicting the output of an LTI system directly using offline input-output data (and without the use of a parametric model) in the behavioral setting. Existing works calculate the output predictions by projecting the recent samples of the input and output signals onto the column span of a Hankel matrix consisting of the offline input-output data. However, if the offline data is corrupted by noise, the output prediction is no longer exact. While some prior works propose mitigating noisy data through matrix low-ranking approximation heuristics, such as truncated singular value decomposition, the ensuing prediction accuracy remains unquantified. This paper fills these gaps by introducing two upper bounds on the prediction error under the condition that the noise is sufficiently small relative to the offline data's magnitude. The first bound pertains to prediction using the raw offline data directly, while the second one applies to the case of low-ranking approximation heuristic. Notably, the bounds do not require the ground truth about the system output, relying solely on noisy measurements with a known noise level and system order. Extensive numerical simulations show that both bounds decrease monotonically (and linearly) as a function of the noise level. Furthermore, our results demonstrate that applying the de-noising heuristic in the output error setup does not generally lead to a better prediction accuracy as compared to using raw data directly, nor a smaller upper bound on the prediction error. However, it allows for a more general upper bound, as the first upper bound requires a specific condition on the partitioning of the Hankel matrix.

In the bounded storage model introduced by Maurer, the adversary is computationally unbounded and has a bounded storage capacity. In this model, information-theoretic secrecy is guaranteed by using a publicly available random string whose length is larger than the adversary storage capacity. The protocol proposed by Maurer is simple, from the perspective of implementation, and efficient, from the perspective of the initial secret key size and random string length. However, he provided the proof of the security for the case where the adversary can access a constant fraction of the random string and store only original bits of the random string. In this paper, we provide a new proof of the security of the protocol proposed by Maurer for the general bounded storage model, i.e., the adversary can access all bits of the random string, and store the output of any Boolean function on the string. We reaffirm that the protocol is absolutely semantically secure in the general bounded storage model., Comment: 24 pages

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) is a gene editing technology that has revolutionized the fields of biology and medicine. However, one of the challenges of using CRISPR is predicting the on-target efficacy and off-target sensitivity of single-guide RNAs (sgRNAs). This is because most existing methods are trained on separate datasets with different genes and cells, which limits their generalizability. In this paper, we propose a novel ensemble learning method for sgRNA design that is accurate and generalizable. Our method combines the predictions of multiple machine learning models to produce a single, more robust prediction. This approach allows us to learn from a wider range of data, which improves the generalizability of our model. We evaluated our method on a benchmark dataset of sgRNA designs and found that it outperformed existing methods in terms of both accuracy and generalizability. Our results suggest that our method can be used to design sgRNAs with high sensitivity and specificity, even for new genes or cells. This could have important implications for the clinical use of CRISPR, as it would allow researchers to design more effective and safer treatments for a variety of diseases.

We explore the spatial features of various orders of Fraunhofer diffraction patterns in a four-level N-type atomic system. The system interacts with a weak probe light, a standing wave (SW) coupling field in the x-direction, and a cylindrical beam of composite optical vortex type. We derive the first-order linear and third-order cross-Kerr nonlinear parts of the probe susceptibility by expanding the probe susceptibility of the system into the second order of the SW beam. This allows us to solve the integral equation of Fraunhofer diffraction, decoding its varying degrees to specific degrees of Bessel functions containing the nonlinear susceptibility. Notably, the nonlinear susceptibility exhibits dependence on the Orbital Angular Momentum (OAM) of the light beam, leading to spatial variations in the Bessel functions and, consequently, in the different orders of Fraunhofer diffraction. Leveraging the manipulation of OAM, we achieve precise control over the spatial mapping of diverse diffraction orders at various locations. Our research sheds new light on the spatial behavior of Fraunhofer diffraction in complex atomic systems. It presents exciting prospects for harnessing the OAM characteristics of light in future optical technologies.

This paper proposes two nonlinear dynamics to solve constrained distributed optimization problem for resource allocation over a multi-agent network. In this setup, coupling constraint refers to resource-demand balance which is preserved at all-times. The proposed solutions can address various model nonlinearities, for example, due to quantization and/or saturation. Further, it allows to reach faster convergence or to robustify the solution against impulsive noise or uncertainties. We prove convergence over weakly connected networks using convex analysis and Lyapunov theory. Our findings show that convergence can be reached for general sign-preserving odd nonlinearity. We further propose delay-tolerant mechanisms to handle general bounded heterogeneous time-varying delays over the communication network of agents while preserving all-time feasibility. This work finds application in CPU scheduling and coverage control among others. This paper advances the state-of-the-art by addressing (i) possible nonlinearity on the agents/links, meanwhile handling (ii) resource-demand feasibility at all times, (iii) uniform-connectivity instead of all-time connectivity, and (iv) possible heterogeneous and time-varying delays. To our best knowledge, no existing work addresses contributions (i)-(iv) altogether. Simulations and comparative analysis are provided to corroborate our contributions.

Understanding the impact of network clustering and small-world properties on epidemic spread can be crucial in developing effective strategies for managing and controlling infectious diseases. Particularly in this work, we study the impact of these network features on targeted intervention (e.g., self-isolation and quarantine). The targeted individuals for self-isolation are based on centrality measures and node influence metrics. Compared to our previous works on scale-free networks, small-world networks are considered in this paper. Small-world networks resemble real-world social and human networks. In this type of network, most nodes are not directly connected but can be reached through a few intermediaries (known as the small-worldness property). Real social networks, such as friendship networks, also exhibit this small-worldness property, where most people are connected through a relatively small number of intermediaries. We particularly study the epidemic curve flattening by centrality-based interventions/isolation over small-world networks. Our results show that high clustering while having low small-worldness (higher shortest path characteristics) implies flatter infection curves. In reality, a flatter infection curve implies that the number of new cases of a disease is spread out over a longer period of time, rather than a sharp and sudden increase in cases (a peak in epidemic). In turn, this reduces the strain on healthcare resources and helps to relieve the healthcare services.

Often, recommendation systems employ continuous training, leading to a self-feedback loop bias in which the system becomes biased toward its previous recommendations. Recent studies have attempted to mitigate this bias by collecting small amounts of unbiased data. While these studies have successfully developed less biased models, they ignore the crucial fact that the recommendations generated by the model serve as the training data for subsequent training sessions. To address this issue, we propose a framework that learns an unbiased estimator using a small amount of uniformly collected data and focuses on generating improved training data for subsequent training iterations. To accomplish this, we view recommendation as a contextual multi-arm bandit problem and emphasize on exploring items that the model has a limited understanding of. We introduce a new offline sequential training schema that simulates real-world continuous training scenarios in recommendation systems, offering a more appropriate framework for studying self-feedback bias. We demonstrate the superiority of our model over state-of-the-art debiasing methods by conducting extensive experiments using the proposed training schema.

The fast growth of social networks and their data access limitations in recent years has led to increasing difficulty in obtaining the complete topology of these networks. However, diffusion information over these networks is available, and many algorithms have been proposed to infer the underlying networks using this information. The previously proposed algorithms only focus on inferring more links and ignore preserving the critical topological characteristics of the underlying social networks. In this paper, we propose a novel method called DANI to infer the underlying network while preserving its structural properties. It is based on the Markov transition matrix derived from time series cascades, as well as the node-node similarity that can be observed in the cascade behavior from a structural point of view. In addition, the presented method has linear time complexity (increases linearly with the number of nodes, number of cascades, and square of the average length of cascades), and its distributed version in the MapReduce framework is also scalable. We applied the proposed approach to both real and synthetic networks. The experimental results showed that DANI has higher accuracy and lower run time while maintaining structural properties, including modular structure, degree distribution, connected components, density, and clustering coefficients, than well-known network inference methods., Comment: arXiv admin note: substantial text overlap with arXiv:1706.00941

The importance of retention rate for higher education institutions has encouraged data analysts to present various methods to predict at-risk students. The present study, motivated by the same encouragement, proposes a deep learning model trained with 121 features of diverse categories extracted or engineered out of the records of 60,822 postsecondary students. The model undertakes to identify students likely to graduate, the ones likely to transfer to a different school, and the ones likely to drop out and leave their higher education unfinished. This study undertakes to adjust its predictive methods for different stages of curricular progress of students. The temporal aspects introduced for this purpose are accounted for by incorporating layers of LSTM in the model. Our experiments demonstrate that distinguishing between to-be-graduate and at-risk students is reasonably achievable in the earliest stages, and then it rapidly improves, but the resolution within the latter category (dropout vs. transfer) depends on data accumulated over time. However, the model remarkably foresees the fate of students who stay in the school for three years. The model is also assigned to present the weightiest features in the procedure of prediction, both on institutional and student levels. A large, diverse sample size along with the investigation of more than one hundred extracted or engineered features in our study provide new insights into variables that affect students success, predict dropouts with reasonable accuracy, and shed light on the less investigated issue of transfer between colleges. More importantly, by providing individual-level predictions (as opposed to school-level predictions) and addressing the outcomes of transfers, this study improves the use of ML in the prediction of educational outcomes., Comment: 15 pages, 17 figures, 1 apendix

The Orthogonal-Time-Frequency-Space (OTFS) signaling is known to be resilient to doubly-dispersive channels, which impacts high mobility scenarios. On the other hand, the Orthogonal-Frequency-Division-Multiplexing (OFDM) waveforms enjoy the benefits of the reuse of legacy architectures, simplicity of receiver design, and low-complexity detection. Several studies that compare the performance of OFDM and OTFS have indicated mixed outcomes due to the plethora of system parameters at play beyond high-mobility conditions. In this work, we exemplify this observation using simulations and propose a deep neural network (DNN)-based adaptation scheme to switch between using either an OTFS or OFDM signal processing chain at the transmitter and receiver for optimal mean-squared-error (MSE) performance. The DNN classifier is trained to switch between the two schemes by observing the channel condition, received SNR, and modulation format. We compare the performance of the OTFS, OFDM, and the proposed switched-waveform scheme. The simulations indicate superior performance with the proposed scheme with a well-trained DNN, thus improving the MSE performance of the communication significantly., Comment: Accepted for publication in IEEE Future Networks World Forum 2023

Breast cancer is one of the most common cancers affecting women worldwide. They include a group of malignant neoplasms with a variety of biological, clinical, and histopathological characteristics. There are more than 35 different histological forms of breast lesions that can be classified and diagnosed histologically according to cell morphology, growth, and architecture patterns. Recently, deep learning, in the field of artificial intelligence, has drawn a lot of attention for the computerized representation of medical images. Searchable digital atlases can provide pathologists with patch matching tools allowing them to search among evidently diagnosed and treated archival cases, a technology that may be regarded as computational second opinion. In this study, we indexed and analyzed the WHO breast taxonomy (Classification of Tumours 5th Ed.) spanning 35 tumour types. We visualized all tumour types using deep features extracted from a state-of-the-art deep learning model, pre-trained on millions of diagnostic histopathology images from the TCGA repository. Furthermore, we test the concept of a digital "atlas" as a reference for search and matching with rare test cases. The patch similarity search within the WHO breast taxonomy data reached over 88% accuracy when validating through "majority vote" and more than 91% accuracy when validating using top-n tumour types. These results show for the first time that complex relationships among common and rare breast lesions can be investigated using an indexed digital archive.

This paper presents a comprehensive review of recent advancements in image processing and deep learning techniques for pavement distress detection and classification, a critical aspect in modern pavement management systems. The conventional manual inspection process conducted by human experts is gradually being superseded by automated solutions, leveraging machine learning and deep learning algorithms to enhance efficiency and accuracy. The ability of these algorithms to discern patterns and make predictions based on extensive datasets has revolutionized the domain of pavement distress identification. The paper investigates the integration of unmanned aerial vehicles (UAVs) for data collection, offering unique advantages such as aerial perspectives and efficient coverage of large areas. By capturing high-resolution images, UAVs provide valuable data that can be processed using deep learning algorithms to detect and classify various pavement distresses effectively. While the primary focus is on 2D image processing, the paper also acknowledges the challenges associated with 3D images, such as sensor limitations and computational requirements. Understanding these challenges is crucial for further advancements in the field. The findings of this review significantly contribute to the evolution of pavement distress detection, fostering the development of efficient pavement management systems. As automated approaches continue to mature, the implementation of deep learning techniques holds great promise in ensuring safer and more durable road infrastructure for the benefit of society.

In practical scenarios, the effectiveness of sequential recommendation systems is hindered by the user cold-start problem, which arises due to limited interactions for accurately determining user preferences. Previous studies have attempted to address this issue by combining meta-learning with user and item-side information. However, these approaches face inherent challenges in modeling user preference dynamics, particularly for "minor users" who exhibit distinct preferences compared to more common or "major users." To overcome these limitations, we present a novel approach called ClusterSeq, a Meta-Learning Clustering-Based Sequential Recommender System. ClusterSeq leverages dynamic information in the user sequence to enhance item prediction accuracy, even in the absence of side information. This model preserves the preferences of minor users without being overshadowed by major users, and it capitalizes on the collective knowledge of users within the same cluster. Extensive experiments conducted on various benchmark datasets validate the effectiveness of ClusterSeq. Empirical results consistently demonstrate that ClusterSeq outperforms several state-of-the-art meta-learning recommenders. Notably, compared to existing meta-learning methods, our proposed approach achieves a substantial improvement of 16-39% in Mean Reciprocal Rank (MRR).

In this paper, we investigate the asymptotically Anti de Sitter solutions of rotating black strings coupled to Born-Infeld and Modified Maxwell non-linear electrodynamics in the context of Einsteinian, Einsteinian cubic and Einsteinian quartic gravity. By studying the near-horizon behavior of solutions, we find the mass parameter, surface gravity and accordingly the Hawking temperature. We also compute the entropy, mass, angular momentum, electric charge, and the electrostatic potential of solutions to show that, in the context of above theories and in the presence of two mentioned non-linear electrodynamics, the first law of thermodynamics for rotating black strings is also exactly hold. We also investigate extremality, thermal stability and phase transition of solutions., Comment: LaTex file, 21 pages, 4 figures, v2: version to appear in JCAP