23 results on '"Hajibarat, Zohreh"'
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2. Investigation of morpho-physiolgical traits and gene expression in barley under nitrogen deficiency
- Author
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Hajibarat, Zohreh, Saidi, Abbas, Ghazvini, Habibollah, and Hajibarat, Zahra
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- 2024
- Full Text
- View/download PDF
3. Differential expression of the genes encoding immune system components in response to Pseudomonas syringae and Pseudomonas aeruginosa in Arabidopsis thaliana
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Saidi, Abbas, Safaeizadeh, Mehdi, and Hajibarat, Zohreh
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- 2024
- Full Text
- View/download PDF
4. Comparative analysis of physiological traits and gene expression patterns in nitrogen deficiency among barley cultivars
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Hajibarat, Zohreh, Saidi, Abbas, Ghazvini, Habibollah, and Hajibarat, Zahra
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- 2023
- Full Text
- View/download PDF
5. Identification of myosin genes and their expression in response to biotic (PVY, PVX, PVS, and PVA) and abiotic (Drought, Heat, Cold, and High-light) stress conditions in potato
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Hajibarat, Zahra, Saidi, Abbas, Gorji, Ahmad Mosuapour, Zeinalabedini, Mehrshad, Ghaffari, Mohammad Reza, Hajibarat, Zohreh, and Nasrollahi, Ali
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- 2022
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6. Genome-wide identification of 14-3-3 gene family and characterization of their expression in developmental stages of Solanum tuberosum under multiple biotic and abiotic stress conditions
- Author
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Hajibarat, Zahra, Saidi, Abbas, and Hajibarat, Zohreh
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- 2022
- Full Text
- View/download PDF
7. Senescence-associated proteins and nitrogen remobilization in grain filling under drought stress condition
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Hajibarat, Zohreh and Saidi, Abbas
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- 2022
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- View/download PDF
8. Differential expression of the genes encoding immune system components in response to Pseudomonas syringae and Pseudomonas aeruginosa in Arabidopsis thaliana
- Author
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Saidi, Abbas, primary, Safaeizadeh, Mehdi, additional, and Hajibarat, Zohreh, additional
- Published
- 2023
- Full Text
- View/download PDF
9. In-silico analysis of eukaryotic translation initiation factors (eIFs) in response to environmental stresses in rice (Oryza sativa)
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Saidi, Abbas and Hajibarat, Zohreh
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- 2020
- Full Text
- View/download PDF
10. Genome-wide Identification of HvPP2C Genes and Expression Profiling in Response to Cold and Heat Stresses in Barley (Hordeum vulgare L.)
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Hajibarat, Zohreh, primary and Saidi, Abbas, additional
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- 2023
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- View/download PDF
11. Genome wide identification of AGC kinase genes and their expression in response to heat and cold stresses in barley
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HAJIBARAT, Zohreh, primary and SAIDI, Abbas, additional
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- 2022
- Full Text
- View/download PDF
12. Characterization of genetic diversity in chickpea using SSR markers, Start Codon Targeted Polymorphism (SCoT) and Conserved DNA-Derived Polymorphism (CDDP)
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Hajibarat, Zahra, Saidi, Abbas, Hajibarat, Zohreh, and Talebi, Reza
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- 2015
- Full Text
- View/download PDF
13. Phylogeny, gene structure and GATA genes expression in different tissues of solanaceae species
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Saidi, Abbas, primary, Hajibarat, Zohreh, additional, and Hajibarat, Zahra, additional
- Published
- 2021
- Full Text
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14. Weighted gene co-expressed network analysis in barley and expression of hub genes involved at the germination stage.
- Author
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Hajibarat, Zohreh, Saidi, Abbas, Ghaffari, Mohammad Reza, Zeinalabedini, Mehrshad, and Hajibarat, Zahra
- Subjects
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SEEDS , *BARLEY , *MICROARRAY technology , *HYDROLASES , *METABOLISM - Abstract
Objective: Seed germination is an important process that determines the beginning of the seed plant life cycle. However, the mechanism underlying seed germination in barley remains unclear. To understand the molecular mechanism of seed germination in barley, WGCNA analysis was used to detect the hub and responsive genes and to reveal the expression of the genes on seed germination. WGCNA is a valuable tool for studying the correlation between genes, identifying modules with high correlation, and identifying Hub genes in different modules. Materials and methods: Raw microarray data related to the germination stage were obtained from the GEO microarray database for 0h, 3h, 9h, 18h, 33h, and 71h after the germination stage. Then, weighted gene coexpression network analysis (WGCNA) was utilized for the detection of co-expressed network genes. In the present study, a barley cultivar, Mahtab, was utilized to show expression patterns after 9h, 18h, and 71h after the germination stage. A total number of 4137 differentially expressed genes (DEG) were identified, with some genes showing higher expression in Mahtab and three genes verified by qRT-PCR. Results: Most of these DEGs were involved in metabolic processes, cellular processes, glycolysis, and response to a stimulus. Hub gene in MEbrown was alpha/beta-Hydrolases superfamily protein, MEpurple was U-box domain-containing protein 4, and MEdarkgrey was B3 domain-containing transcription factor ABI3 which were positively correlated with germinated seeds. The results showed a microarray database and candidate genes for further study of barley at germination stages. In addition, DEGs were divided into three modules by WGCNA. In this study, gene modules associated with seed germination during barley seed germination were identified. Transcription factor and alpha/beta-hydrolase played an important role at the germination stage. Also, gene modules and hub genes at 9h, 18h, and 71h after germination were detected. As there is a lack of information on the seed germination requirements of barley, this research was conducted to study seed germination mechanisms as well as evaluation of hub genes to study molecular mechanism of seed germination in barley. Conclusions: The results of the present study provide new insights into the molecular mechanism underlying barley seed germination. Based on the network analysis, transcription factors (TFs) and ubiquitin proteins were involved in germination. Most of the genes related to each module were related to proteins involved in carbohydrate metabolism, glycolysis, and protein degradation. Our gene expression results can serve as molecular markers in barley cultivars during seed germination. These findings can be suitable for molecular-assisted selection and breeding of fast-germinating barley genotypes. [ABSTRACT FROM AUTHOR]
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- 2022
- Full Text
- View/download PDF
15. Evolutionary and Expression Analysis of CAMTA Gene Family in Three Species (Arabidopsis, Maize and Tomato), and Gene Expression in Response to Developmental Stages
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Saidi, Abbas, primary and Hajibarat, Zohreh, additional
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- 2021
- Full Text
- View/download PDF
16. Application of Next Generation Sequencing, GWAS, RNA seq, WGRS, for genetic improvement of potato (Solanum tuberosum L.) under drought stress
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Saidi, Abbas, primary and Hajibarat, Zohreh, additional
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- 2020
- Full Text
- View/download PDF
17. Computational study of environmental stress-related transcription factor binding sites in the promoter regions of maize auxin response factor (ARF) gene family
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SAIDI, Abbas, primary and HAJIBARAT, Zohreh, additional
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- 2020
- Full Text
- View/download PDF
18. Identification of responsive genes and analysis of genes with bacterial-inducible cis-regulatory elements in the promoter regions in Oryza sativa L.
- Author
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SAIDI, Abbas, primary, HAJIBARAT, Zohreh, additional, and HAJIBARAT, Zahra, additional
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- 2020
- Full Text
- View/download PDF
19. Transcriptome analysis of Phytophthora infestans and Colletotrichum coccodes in tomato to reveal resistance mechanisms
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Saidi, Abbas, primary, Hajibarat, Zahra, additional, and Hajibarat, Zohreh, additional
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- 2020
- Full Text
- View/download PDF
20. Characterization of cis-elements in hormonal stress-responsive genes in Oryza sativa
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Saidi, Abbas, primary and Hajibarat, Zohreh, additional
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- 2019
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21. Comparison of Genetic Variation of Anthurium (Anthurium andraeanum) Cultivars Using SCoT, CDDP and RAPD Markers
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Saidi, Abbas, primary, Daneshvar, Zahra, primary, and Hajibarat, Zohreh, primary
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- 2018
- Full Text
- View/download PDF
22. Differential expression of the genes encoding immune system components in response to Pseudomonas syringaeand Pseudomonas aeruginosain Arabidopsis thaliana
- Author
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Saidi, Abbas, Safaeizadeh, Mehdi, and Hajibarat, Zohreh
- Abstract
In innate immunity, the first layer of defense against any microbial infection is triggered by the perception of pathogen-associated molecular patterns by highly specific pattern recognition receptors. The Pseudomonas syringae pv. tomatoand Pseudomonas aeruginosaare plant-pathogenic bacterial species that include pathogenic strains in a wide range of different plant species. In the current study, extensive analysis including gene expression of 12 hub genes, gene ontology, protein–protein interaction, and cis-element prediction to dissect the Arabidopsisresponse to above-mentioned bacteria were performed. Further, we evaluated weighted co-expression network analysis (WGCNA) in the wild-type plants and coi-1mutant line and determined changes in responsive genes at two time-points (4 and 8 h) of post-treatment with P. syringaeand P. aeruginosa. Compared to the wild-type plants, coi-1mutant showed significant expression in most of the genes involved, indicating that their protein products have important role in innate immunity and RNA silencing pathways. Our findings showed that 12 hub genes were co-expressed in response to P. syringaeand P. aeruginosainfections.Based on the network analysis, transcription factors, receptors, protein kinase, and pathogenesis-related protein (PR1) were involved in the immunity system. Gene ontology related to each module was involved in defense response, protein serine kinase activity, and primary miRNA processing. Based on the cis-elements prediction, MYB, MYC, WRE3, W-box, STRE, and ARE contained the most number of cis-elements in co-expressed network genes. Also, in coi-1mutant, most responsive genes against theses pathogens were up-regulated.The knowledge gained in the gene expression analysis in response to P. syringaeand P. aeruginosain the model plant, i.e., Arabidopsis,is essential to allow us to gain more insight about the innate immunity in other crops.
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- 2024
- Full Text
- View/download PDF
23. Untitled.
- Author
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Saidi, Abbas and Hajibarat, Zohreh
- Abstract
Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. Eukaryotic translation initiation factors (eIFs) are one of the most important components in protein synthesis in plants. Most of eIFs genes are involved in growth processes like embryogenesis, flowering, and different stresses. In the present study, an in silico analysis of 17 riceeIFs genes was conducted in response to environmental stresses. Analysis of bioinformatics performed included gene network, chromosomal map, transcriptional factor binding sites (TFBs) analysis, and phylogenetic relationships among theeIF genes in rice. The transcription of a gene is mainly regulated by TFBs that are specifically bound by regulatory proteins called transcription factors (TFs). Analysis of bioinformatics databases was performed to identify TFBs ineIFs genes using Plant Promoter Analysis (PlantPAN). The analysis of network gene revealed that eIFs and transcription factors organized the major gene networks and are mainly expressed in nucleus, cytoplasm, mitochondria, and chloroplast. Co-expression analysis has shown that interacting proteins tend to have similar expression profiles and tend to be localized to the same or adjacent compartment. Several TFBs including AP2/ERF, WRKY, bZIP, bHLH, GATA, and NAC/NAM were identified in our analysis. We found a positive correlation betweeneIFs promoter regions of genes and presence of TFBs.This paper is the first report on in silico analysis ofeIFs genes inO. sativa In this paper, we will focus on analysis of initiation factors and their expressions under environmental stresses and different developmental stages using microarray data.. [ABSTRACT FROM AUTHOR] - Published
- 2020
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