318 results on '"Haft, Daniel H."'
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2. What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira.
3. RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes
4. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
5. Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
6. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat
7. RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.
8. Genome Analysis of Multiple Pathogenic Isolates of Streptococcus agalactiae: Implications for the Microbial "Pan-Genome"
9. Structural Flexibility in the Burkholderia mallei Genome
10. In silicodiscovery of the myxosortases that process MYXO-CTERM and three novel prokaryotic C-terminal protein-sorting signals that share invariant Cys residues
11. The Complete Genome Sequence of the Arabidopsis and Tomato Pathogen Pseudomonas syringae pv. tomato DC3000
12. The Complete Genome Sequence of Chlorobium tepidum TLS, A Photosynthetic, Anaerobic, Green-Sulfur Bacterium
13. Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae
14. Complete Genome Sequence of Caulobacter crescentus
15. Comparative Genomics of Emerging Human Ehrlichiosis Agents
16. Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58
17. Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
18. Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1
19. Eight Unexpected Selenoprotein Families in Organometallic Biochemistry in Clostridium difficile, in ABC Transport, and in Methylmercury Biosynthesis
20. Myxosortases process MYXO-CTERM and other bacterial C-terminal protein-sorting signals that have invariant Cys residues
21. InterPro in 2022
22. Genomics and Bioinformatics of the PVC Superphylum
23. Eight Unexpected Selenoprotein Families in ABC transport, in Organometallic Biochemistry in Clostridium difficile and other anaerobes, and in Methylmercury Biosynthesis
24. Curation of the AMRFinderPlus databases: applications, functionality and impact
25. Consensus on β-Lactamase Nomenclature
26. Identification of Widespread Adenosine Nucleotide Binding in Mycobacterium tuberculosis
27. InterPro in 2022.
28. Folding the unfoldable: using AlphaFold to explore spurious proteins
29. Identical Short Peptide Sequences in Unrelated Proteins Can Have Different Conformations: A Testing Ground for Theories of Immune Recognition
30. A standard numbering scheme for class c β-lactamases
31. Simultaneous non-contiguous deletions using large synthetic DNA and site-specific recombinases
32. CRISPR-Cas Systems and Cas Protein Families
33. Unexpected abundance of coenzyme F420-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria
34. Methanobactin and MmoD work in concert to act as the ‘copper-switch’ in methanotrophs
35. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus
36. RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
37. The InterPro protein families and domains database: 20 years on
38. Insights on evolution Of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
39. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
40. TIGRFAMs and Genome Properties in 2013
41. Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83
42. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
43. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
44. Erratum for Feldgarden et al., “Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates”
45. A Standard Numbering Scheme for Class C β-Lactamases
46. Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
47. Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates
48. Equivalog protein families in the TIGRFAMs database
49. TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
50. Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
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