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Vegetable production may be the source of excessive residual nitrate that is prone to leaching to waters. To ascertain the risk of nitrate leaching in water collection area, the content of soil mineral nitrogen (Nmin = N-NO3− + N-NH4+) down to 120 cm depth was monitored in the years 2013–2016 on vegetable farms along lower Jizera river (in the Czech Republic). The risk of nitrate leaching below 30, 60, 90 and 120 cm during winter period was simulated with a simple model. The depths represent the limits of effective root depth and N depletion of groups of vegetables and field crops. The average autumn mineral nitrogen content in the fields, during experimental years, ranged from 101 kg to 134 kg N·ha−1 in the 0–120 cm soil layer, 85 to 92% of which was in the form of nitrate. The calculated leaching of nitrate from the topsoil (0–30 cm) and shallow subsoil (0–60 cm) ranged from 27 to 41%, and from 7 to 14% of autumn content, respectively. The risk of leaching below 60 cm and 90 cm was near to none during the experimental years due to the exceptionally low precipitation. High nitrate content in subsoil layers below 60 cm constitutes risk of leaching and water pollution due to shallow root systems of many vegetables and potatoes in seasons with normal weather and higher water percolation.

The Indo–Pacific Pollen Database (IPPD) is the brainchild of the late professor Geoffrey Hope, who gathered pollen records from across the region to ensure their preservation for future generations of palaeoecologists. This noble aim is now being fulfilled by integrating the IPPD into the online Neotoma Paleoecology Database, making this compilation available for public use. Here we explore the database in depth and suggest directions for future research. The IPPD comprises 226 fossil pollen records, most postdating 20 ka but with some extending as far back as 50 ka or further. Over 80 % of the records are Australian, with a fairly even distribution between the different Australian geographical regions, with the notable exception being Western Australia, which is only represented by three records. The records are also well distributed in the modern climate space, with the largest gap being in drier regions due to preservation issues. However, many of the records contain few samples or have fewer than five chronology control points, such as radiocarbon, luminescence or Pb-210, for the younger sequences. Average deposition time for the whole database, counted as years per centimetre, is 64.8 yr cm−1, with 61 % of the records having a deposition time shorter than 50 yr cm−1. The slowest deposition time by geographical region occurs on Australia's east coast, while the fastest times are from the western Pacific. Overall, Australia has a slower deposition time than the rest of the Indo–Pacific region. The IPPD offers many exciting research opportunities to investigate past regional vegetation changes and associated drivers, including contrasting the impact of the first human arrival and European colonisation on vegetation. Examining spatiotemporal patterns of diversity and compositional turnover/rate of change, land cover reconstructions, and plant functional or trait diversity are other avenues of potential research, amongst many others. Merging the IPPD into Neotoma also facilitates inclusion of data from the Indo–Pacific region into global syntheses.

Temperature is a key parameter that influences the uptake and subsequent utilization of nitrogen by plants. Both suboptimal and supraoptimal temperatures can impair nutrient uptake. The close relatives of bread wheat provide a possible source for breeders to increase stress tolerance. The effect of the increasing temperature (5, 10, 15, 20 and 30 °C) on nitrate uptake and metabolism in five modern spring cultivars of bread wheat (Triticum aestivum L.) and two cultivars of emmer wheat (Triticum dicoccon Schrank), was monitored. Wheat plants were grown under controlled conditions in hydroponics. The parameters of Michaelis-Menten kinetics, maximum uptake rate (Vmax), the Michaelis constant (Km) and selected characteristics of nitrate metabolism, the activity of nitrate reductase (NR) and contents of nitrate in leaves were observed. The effect of temperature was significant for all studied traits except Km, while the cultivar factor was significant for Vmax, Km, NR and root/shoot ratio (R/S). Emmer wheat cultivar Rudico had significantly higher Vmax at 5, 15, 20 and 30 °C than all bread wheat cultivars, on average 7.07, in comparison with 4.09-4.43 μmol NO3-/g FW/h in bread wheat cultivars. Emmer wheat Rudico and Tapiruz had significantly higher Km (on average, 41.59 and 47.22 μM NO3-) than bread wheat cultivars (27.59-33.44 μM NO3-). Differences in the studied kinetic parameters of nitrate uptake offer the possibility of using T. dicoccon genotypes in breeding for better nitrogen use efficiency.

Actualmente, los consumidores de fruta son altamente exigentes tanto en la calidad externa como interna de la fruta. En el aspecto externo, exigen ausencia de daños causados por plagas y/o enfermedades con énfasis en aquellas consideradas cuarentenarias como es Mancha Negra (MN) causada por el hongo Guignardia citricarpa Kiely. Con respecto a los aspectos internos, se considera que debe tener alta calidad organoléptica y, sobre todo, tener mínimos residuos de plaguicidas. Para contribuir con ambos objetivos, se están realizando desde hace varios años tratamientos para optimizar la dosis de fungicidas y volúmenes aplicados a lotes con frutas con destino de exportación. A tal efecto se han realizado ensayos por tres años para el ajuste del volumen de caldo a aplicar por hectárea en función del tamaño de los árboles aplicando la fórmula del TRV (“Tree Row Volume”) en un lote de naranja Valencia (Citrus sinensis L. Osb.) con alta incidencia de (MN). Los ensayos consistieron en la utilización de picos inyectores de aire ID instalados en turbinas de alto volumen con el fin de reducir el volumen total de caldo de modo similar al logrado con la tecnología de bajo volumen. Los resultadosobtenidos en diferentes campañas con picos ID en tratamientos reducidos al 50% en volumen ejercieron un muy buen control de la enfermedad sin diferencias significativas con respecto a los tratamientos de alto volumen convencionales. Esta estrategia permite optimizar la utilización de equipos existentes con el beneficiodel ahorro de agua, insumos y, además, sustentable con el ambiente.

Abstract Background Non-small cell lung carcinoma (NSCLC) is a complex malignancy that owing to its heterogeneity and poor prognosis poses many challenges to diagnosis, prognosis and patient treatment. DNA methylation is an important mechanism of epigenetic regulation involved in normal development and cancer. It is a very stable and specific modification and therefore in principle a very suitable marker for epigenetic phenotyping of tumors. Here we present a genome-wide DNA methylation analysis of NSCLC samples and paired lung tissues, where we combine MethylCap and next generation sequencing (MethylCap-seq) to provide comprehensive DNA methylation maps of the tumor and paired lung samples. The MethylCap-seq data were validated by bisulfite sequencing and methyl-specific polymerase chain reaction of selected regions. Results Analysis of the MethylCap-seq data revealed a strong positive correlation between replicate experiments and between paired tumor/lung samples. We identified 57 differentially methylated regions (DMRs) present in all NSCLC tumors analyzed by MethylCap-seq. While hypomethylated DMRs did not correlate to any particular functional category of genes, the hypermethylated DMRs were strongly associated with genes encoding transcriptional regulators. Furthermore, subtelomeric regions and satellite repeats were hypomethylated in the NSCLC samples. We also identified DMRs that were specific to two of the major subtypes of NSCLC, adenocarcinomas and squamous cell carcinomas. Conclusions Collectively, we provide a resource containing genome-wide DNA methylation maps of NSCLC and their paired lung tissues, and comprehensive lists of known and novel DMRs and associated genes in NSCLC.

Manganese porphyrins reportedly exhibit synergic effects when combined with irradiation. However, an in-depth understanding of intratumoral heterogeneity and immune pathways, as affected by Mn porphyrins, remains limited. Here, we explored the mechanisms underlying immunomodulation of a clinical candidate, MnTnBuOE-2-PyP5+ (BMX-001, MnBuOE), using single-cell analysis in a murine carcinoma model. Mice bearing 4T1 tumors were divided into four groups: control, MnBuOE, radiotherapy (RT), and combined MnBuOE and radiotherapy (MnBuOE/RT). In epithelial cells, the epithelial–mesenchymal transition, TNF-α signaling via NF-кB, angiogenesis, and hypoxia-related genes were significantly downregulated in the MnBuOE/RT group compared with the RT group. All subtypes of cancer-associated fibroblasts (CAFs) were clearly reduced in MnBuOE and MnBuOE/RT. Inhibitory receptor–ligand interactions, in which epithelial cells and CAFs interacted with CD8+ T cells, were significantly lower in the MnBuOE/RT group than in the RT group. Trajectory analysis showed that dendritic cells maturation-associated markers were increased in MnBuOE/RT. M1 macrophages were significantly increased in the MnBuOE/RT group compared with the RT group, whereas myeloid-derived suppressor cells were decreased. CellChat analysis showed that the number of cell–cell communications was the lowest in the MnBuOE/RT group. Our study is the first to provide evidence for the combined radiotherapy with a novel Mn porphyrin clinical candidate, BMX-001, from the perspective of each cell type within the tumor microenvironment.

802.1X, MACsec, and IPsec are widespread network security mechanisms that control network access and add encryption and authentication to L2 and L3 networking. They are standardized by IEEE and IETF, and are part of most open-source and commercial network hardware and software appliances. However, lots of manual configuration is needed for their application in traditional networks. In this work, we present P4sec, a three-tier control architecture for automated configuration of these security protocols in networks with multiple sites. P4sec leverages P4-programmable switches and operates them through distributed controllers. We briefly introduce data plane programming with P4 and give an overview of 802.1X, MACsec, and IPsec. We explain the three-tier control architecture P4sec and validate it by a prototype which is published under the Apache v2 license on GitHub. Finally, we discuss opportunities and challenges.

In this work, we present P4TG, a P4-based traffic generator (TG) which runs on the programmable Intel Tofino $^{\mathrm{ TM}}$ ASIC. In generation mode, P4TG is capable of generating traffic up to 1 Tb/s split across 10x 100 Gb/s ports. Thereby it measures rates directly in the data plane. Generated traffic may be fed back from the output to the input ports, possibly through other equipment, to record packet loss, packet reordering, and sampled inter-arrival times (IATs) and round trip times (RTTs). In analysis mode, P4TG measures rates on the input ports, samples IATs, and forwards traffic through its output ports. Existing software or P4-based traffic generators either lack the required accuracy, do not support high data rates, or do not provide sufficiently integrated measurement capabilities. We compare P4TG’s performance with the one of the software TG TRex and the hardware TG EXFO. P4TG’s code is provided on GitHub.

Invasive alien crayfish threaten the diversity of freshwater ecosystems and native crayfish fauna. In Europe, this is largely due to transmission of the crayfish plague to susceptible native crayfish. Many invasive species tolerate crayfish plague, but the infection still has the potential to reduce the fitness of a tolerant host due to energy trade-offs between immune response maintenance and life-history traits, such as growth and reproduction. In combination with other unfavourable conditions, such a response could alter further invasion success of an otherwise successful crayfish invader. We examined whether repeated infection with one of the most virulent haplogroups of crayfish plague agent (Aphanomyces astaci) affects growth or survival of the juvenile marbled crayfish (Procambarus virginalis). Juveniles were exposed to i) two levels of pathogen concentrations, and ii) two different feeding regimes under the higher pathogen concentration. In all performed trials, repeated infection reduced growth rates, while the combination of recurring infection and food limitation significantly increased mortality. The average energy cost of the immune response was estimated at 12.07 J/day for individuals weighing 0.3 grams. Since infections were frequent and pathogen concentrations high, results suggest that marbled crayfish is resistant to A. astaci pathogen and its survival is only affected by adding the stress of food limitation. The survival of almost half of the individuals exposed to high pathogen loads and extreme food limitation indicates that chronic infection by crayfish plague is unlikely to be an important factor impeding invasion success of the marbled crayfish, even under harsh conditions. Our results add to the growing body of evidence that marbled crayfish has potential to become one of the most successful freshwater invaders.

Abstract Condensation and sublimation of ices at the surface of the planet is a key part of both the Martian H2O and CO2 cycles, either from a seasonal or diurnal aspect. While most of the ice is located within the polar caps, surface frost is known to be formed during nighttime down to equatorial latitudes. Here, we use data from the Emirates Mars Infrared Spectrometer onboard the Emirates Mars Mission to monitor the diurnal and seasonal evolution of the ices at the surface of Mars over almost one Martian year. The unique local time coverage provided by the instrument allows us to observe the apparition of equatorial CO2 frost in the second half of the Martian night around the equinoxes, to its sublimation at sunrise.

The Origins, Spectral Interpretation, Resource Identification, and Security–Regolith Explorer (OSIRIS-REx) mission recently returned a sample of rocks and dust collected from asteroid Bennu. We analyzed the highest-resolution thermal data obtained by the OSIRIS-REx Thermal Emission Spectrometer (OTES) to gain insight into the thermal and physical properties of the sampling site, including rocks that may have been sampled, and the immediately surrounding Hokioi Crater. After correcting the pointing of the OTES data sets, we find that OTES fortuitously observed two dark rocks moments before they were contacted by the spacecraft. We derived thermal inertias of 100–150 (±50) J m ^−2 K ^−1 s ^−1/2 for these two rocks—exceptionally low even compared with other previously analyzed dark rocks on Bennu (180–250 J m ^−2 K ^−1 s ^−1/2 ). Our simulations indicate that monolayer coatings of sand- to pebble-sized particles, as observed on one of these rocks, could significantly reduce the apparent thermal inertia and largely mask the properties of the substrate. However, the other low-thermal-inertia rock that was contacted is not obviously covered in particles. Moreover, this rock appears to have been partially crushed, and thus potentially sampled, by the spacecraft. We conclude that this rock may be highly fractured and that it should be sought in the returned sample to better understand its origin in Bennu’s parent body and the relationship between its thermal and physical properties.

The carbon (C) fixed by crops, which is exported with harvest and retained as postharvest residues in a field, is important for calculating the C balance. The aim of this study was to determine the effect of water availability on the C content in whole wheat plants. In a three-year field trial, the weights of grain, straw, chaff, stubble, and roots of two cultivars of winter wheat (Triticum aestivum L.) and one cultivar of einkorn wheat (Triticum monococcum L.) and their carbon contents were determined in water stress, irrigation, and rain-fed control treatments. The water availability, year, and cultivar had a significant influence on the C content in aboveground plant parts, but the effect of water on grain C was weak. The C content decreased with irrigation and increased with drought, but the differences were small (at most, 3.39% in chaff). On average, the C contents of grain, straw, chaff, and roots reached 45.0, 45.7, 42.6, and 34.9%, respectively. The amount of C exported with grain and left on the field in the form of postharvest residues depended on the weight of the total biomass and the ratio of grain to straw and residue. Whole plant C yield reached 8.99, 7.46, and 9.65 t ha−1 in rain-fed control, stressed, and irrigated treatments, respectively, and 8.91, 9.45, and 7.47 t ha−1 in Artix, Butterfly, and Rumona, respectively. Irrigation significantly increased the C content in grain and straw (but not in chaff, stubble, and roots) in comparison with water shortage conditions. On average, a grain yield of 1 t ha−1 corresponded to an average export of 0.447–0.454 t C ha−1 in the grain of all cultivars and inputs of 0.721, 0.832, and 2.207 t C ha−1 of residue to the soil in the form of straw and postharvest residue in the two cultivars of common wheat and one of einkorn. The results of the study provided reliable data for the calculation of the C balance of wheat under conditions of different water availability.

Abstract Premise Pollen collected by honey bees from different plant species often differs in color, and this has been used as a basis for plant identification. The objective of this study was to develop a new, low‐cost protocol to sort pollen pellets by color using high‐energy violet light and visible light to determine whether pollen pellet color is associated with variations in plant species identity. Methods and Results We identified 35 distinct colors and found that 52% of pollen subsamples (n = 200) were dominated by a single taxon. Among these near‐pure pellets, only one color consistently represented a single pollen taxon (Asteraceae: Cichorioideae). Across the spectrum of colors spanning yellows, oranges, and browns, similarly colored pollen pellets contained pollen from multiple plant families ranging from two to 13 families per color. Conclusions Sorting pollen pellets illuminated under high‐energy violet light lit from four directions within a custom‐made light box aided in distinguishing pellet composition, especially in pellets within the same color.