32 results on '"HEAVY-CHAIN"'
Search Results
2. Molecular mechanism for kinesin-1 direct membrane recognition
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Zuriñe Antón, Judith Mantell, Jessica A. Cross, Edmund R. R. Moody, Yan Y. Yip, Tom A. Williams, Christopher Williams, Roberto A. Steiner, Derek N. Woolfson, Johannes F. Weijman, Mark P. Dodding, and Matthew P. Crump
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TERMINAL DOMAIN ,Biophysics ,Kinesins ,BrisSynBio ,CYTOSKELETON ,macromolecular substances ,Microtubules ,Motor protein ,BCS and TECS CDTs ,03 medical and health sciences ,0302 clinical medicine ,Microtubule ,Lysosome ,Organelle ,medicine ,KINESIN ,Health and Medicine ,CYTOSKELETON, KINESIN, LIGHT-CHAIN, HEAVY-CHAIN, TERMINAL DOMAIN, PROTEIN CARGO BINDING IDENTIFICATION, MEMBRANE ,Cytoskeleton ,PROTEIN CARGO BINDING IDENTIFICATION ,Phylogeny ,Research Articles ,030304 developmental biology ,Adaptor Proteins, Signal Transducing ,0303 health sciences ,Multidisciplinary ,LIGHT-CHAIN ,Chemistry ,Bristol BioDesign Institute ,Alternative splicing ,Signal transducing adaptor protein ,SciAdv r-articles ,HEAVY-CHAIN ,Lipids ,Cell biology ,medicine.anatomical_structure ,Kinesin ,synthetic biology ,MEMBRANE ,030217 neurology & neurosurgery ,Research Article - Abstract
Kinesin-1 uses a membrane-induced curvature-sensitive amphipathic helix to bind directly to cargo membranes., The cargo-binding capabilities of cytoskeletal motor proteins have expanded during evolution through both gene duplication and alternative splicing. For the light chains of the kinesin-1 family of microtubule motors, this has resulted in an array of carboxyl-terminal domain sequences of unknown molecular function. Here, combining phylogenetic analyses with biophysical, biochemical, and cell biology approaches, we identify a highly conserved membrane-induced curvature-sensitive amphipathic helix within this region of a subset of long kinesin light-chain paralogs and splice isoforms. This helix mediates the direct binding of kinesin-1 to lipid membranes. Membrane binding requires specific anionic phospholipids, and it contributes to kinesin-1–dependent lysosome positioning, a canonical activity that, until now, has been attributed exclusively the recognition of organelle-associated cargo adaptor proteins. This leads us to propose a protein-lipid coincidence detection framework for kinesin-1–mediated organelle transport.
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- 2021
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3. Direct Sensing of Nutrients via a LAT1-like Transporter in Drosophila Insulin-Producing Cells
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Flore Geillon, Anna B. Ziegler, Gérard Manière, David E. Featherstone, Yael Grosjean, Centre des Sciences du Goût et de l'Alimentation [Dijon] (CSGA), Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Centre National de la Recherche Scientifique (CNRS), Dendrite Differenciation Group [DZNE - Bonn], German Research Center for Neurodegenerative Diseases - Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Biological Sciences, University of Illinois [Chicago] (UIC), University of Illinois System-University of Illinois System, Centre National de la Recherche Scientifique Université de Bourgogne Franche-ComtéMuscular Dystrophy Association NIH-National Institute of Neurological Disorders and Stroke R01NS045628, Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS), and Grosjean, Yaël
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0301 basic medicine ,Amino Acid Transport Systems ,heavy-chain ,medicine.medical_treatment ,Insulins ,amino acid transporter ,0302 clinical medicine ,genetics [Drosophila Proteins] ,cytology [Drosophila melanogaster] ,Glutamate Dehydrogenase ,Hemolymph ,Insulin-Secreting Cells ,metabolism [Drosophila melanogaster] ,Drosophila ,Drosophila insulin-like peptides ,food ,glutamate dehydrogenase ,glycemia ,growth ,insulin-producing cells ,minidiscs ,starvation ,Drosophila Proteins ,Protein Isoforms ,metabolism [Calcium] ,genetics [Insulins] ,genetics [Amino Acid Transport Systems] ,lcsh:QH301-705.5 ,Gene knockdown ,cytology [Larva] ,pancreatic beta-cell ,Brain ,metabolism [Hemolymph] ,secretion ,Drosophila melanogaster ,Biochemistry ,Larva ,Alimentation et Nutrition ,Leucine ,Signal Transduction ,glucose-transport ,genetics [Glutamate Dehydrogenase] ,genetics [Protein Isoforms] ,amino-acids ,metabolism [Drosophila Proteins] ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Nutrient sensing ,metabolism [Larva] ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,metabolism [Amino Acid Transport Systems] ,metabolism [Insulins] ,03 medical and health sciences ,parasitic diseases ,medicine ,Food and Nutrition ,Animals ,ddc:610 ,cytology [Insulin-Secreting Cells] ,cardiovascular diseases ,Amino acid transporter ,Mnd protein, Drosophila ,administration & dosage [Leucine] ,metabolism [Protein Isoforms] ,Ilp5 protein, Drosophila ,cytology [Brain] ,Glutamate dehydrogenase ,Insulin ,Neurosciences ,Glucose transporter ,metabolism [Insulin-Secreting Cells] ,glutamate-dehydrogenase ,l-leucine ,030104 developmental biology ,Gene Expression Regulation ,lcsh:Biology (General) ,metabolism [Brain] ,metabolism [Glutamate Dehydrogenase] ,Neurons and Cognition ,metabolism [Leucine] ,Calcium ,metabolism ,fat-cells ,030217 neurology & neurosurgery - Abstract
Summary Dietary leucine has been suspected to play an important role in insulin release, a hormone that controls satiety and metabolism. The mechanism by which insulin-producing cells (IPCs) sense leucine and regulate insulin secretion is still poorly understood. In Drosophila, insulin-like peptides (DILP2 and DILP5) are produced by brain IPCs and are released in the hemolymph after leucine ingestion. Using Ca2+-imaging and ex vivo cultured larval brains, we demonstrate that IPCs can directly sense extracellular leucine levels via minidiscs (MND), a leucine transporter. MND knockdown in IPCs abolished leucine-dependent changes, including loss of DILP2 and DILP5 in IPC bodies, consistent with the idea that MND is necessary for leucine-dependent DILP release. This, in turn, leads to a strong increase in hemolymph sugar levels and reduced growth. GDH knockdown in IPCs also reduced leucine-dependent DILP release, suggesting that nutrient sensing is coupled to the glutamate dehydrogenase pathway., Graphical Abstract, Highlights • IPCs directly sense extracellular leucine levels via minidiscs (MND) • MND knockdown in IPCs abolishes loss of DILP2 and DILP5 • This leads to a strong increase in hemolymph sugar levels and reduces growth • GDH knockdown in IPCs reduces leucine-dependent DILP release, Manière et al. find that leucine induces the disappearance of two DILPs in Drosophila IPCs. Minidiscs (MND) is the primary leucine sensor, and downregulation has consequences for glycemia and growth. The authors propose that the leucine/MND pathway represents a conserved mechanism for insulin release.
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- 2016
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4. Bioinspired Silicification of Silica-Binding Peptide-Silk Protein Chimeras: Comparison of Chemically and Genetically Produced Proteins
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Carole C. Perry, David J. Belton, David L. Kaplan, Heather A. Currie, Laetitia L S Canabady-Rochelle, Olivier Deschaume, CANABADY-ROCHELLE, Laetitia, Nottingham Trent University, Laboratoire Réactions et Génie des Procédés (LRGP), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Tufts Univ, Dept Biomed Engn, Bioengn & Biotechnol Ctr, Tufts University [Medford], and EPSRC EP/E048439/1 AFOSR NIH 5RO1DE017207-05
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[SDV.BIO]Life Sciences [q-bio]/Biotechnology ,Spectrophotometry, Infrared ,Polymers and Plastics ,Peptide ,02 engineering and technology ,SPIDER DRAGLINE SILK ,01 natural sciences ,Spectroscopy, Fourier Transform Infrared ,[CHIM] Chemical Sciences ,Materials Chemistry ,Spider silk ,[INFO.INFO-BT]Computer Science [cs]/Biotechnology ,Peptide sequence ,Protein secondary structure ,ComputingMilieux_MISCELLANEOUS ,chemistry.chemical_classification ,biology ,SECONDARY STRUCTURE ,Nephila clavipes ,Silicon Dioxide ,021001 nanoscience & nanotechnology ,BOMBYX-MORI ,[SDV] Life Sciences [q-bio] ,SILK ,Insect Proteins ,FIBROIN ,0210 nano-technology ,Stereochemistry ,Recombinant Fusion Proteins ,Molecular Sequence Data ,Silk ,Fibroin ,Bioengineering ,010402 general chemistry ,SEQUENCE ,Article ,TRANSFORM INFRARED-SPECTROSCOPY ,Biomaterials ,BIOMATERIAL ,Bombyx mori ,Polymer chemistry ,Animals ,[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering ,Amino Acid Sequence ,fungi ,NANOCONFINEMENT ,BIOSILICIFICATION ,Bombyx ,biology.organism_classification ,HEAVY-CHAIN ,Peptide Fragments ,0104 chemical sciences ,chemistry - Abstract
International audience; Novel protein chimeras constituted of "silk" and a silica-binding peptide (KSLSRHDHIHHH) were synthesized by genetic or chemical approaches and their influence on silica-silk based chimera composite formation evaluated. Genetic chimeras were constructed from 6 or 15 repeats of the 32 amino acid consensus sequence of Nephila clavipes spider silk ([SGRGGLGGQG AGAAAAAGGA GQGGYGGLGSQG](n)) to which one silica binding peptide was fused at the N terminus. For the chemical chimera, 28 equiv of the silica binding peptide were chemically coupled to natural Bombyx mori silk after modification of tyrosine groups by diazonium coupling and EDC/NHS activation of all acid groups. After silica formation under mild, biomaterial-compatible conditions, the effect of peptide addition on the properties of the silk and chimeric silk-silica composite materials was explored. The composite biomaterial properties could be related to the extent of silica condensation and to the higher number of silica binding sites in the chemical chimera as compared with the genetically derived variants. In all cases, the structure of the protein/chimera in solution dictated the type of composite structure that formed with the silica deposition process having little effect on the secondary structural composition of the silk-based materials. Similarly to our study of genetic silk based chimeras containing the R5 peptide (SSKKSGSYSGSKGSKRRIL), the role of the chimeras (genetic and chemical) used in the present study resided more in aggregation and scaffolding than in the catalysis of condensation. The variables of peptide identity, silk construct (number of consensus repeats or silk source), and approach to synthesis (genetic or chemical) can be used to "tune" the properties of the composite materials formed and is a general approach that can be used to prepare a range of materials for biomedical and sensor-based applications.
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- 2017
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5. Immunoglobulin light chains in medaka (Oryzias latipes)
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Christian Sánchez-Espinel, Susana Magadán-Mompó, Anastasia M. Zimmerman, Francisco Gambón-Deza, Institut National de la Recherche Agronomique (INRA), College of Charleston, Universidade de Vigo, and Hospital do Meixoeiro
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Evolution ,[SDV]Life Sciences [q-bio] ,Oryzias ,Molecular Sequence Data ,Immunology ,RAINBOW-TROUT ,Locus (genetics) ,Teleost immunity ,Genome ,Article ,03 medical and health sciences ,0302 clinical medicine ,SOMATIC HYPERMUTATION ,Genetics ,Animals ,Gene family ,JUNCTIONAL DIVERSITY ,Amino Acid Sequence ,Gene ,Phylogeny ,030304 developmental biology ,Genomic organization ,Antibody diversity ,0303 health sciences ,Expressed sequence tag ,Sequence Homology, Amino Acid ,biology ,TELEOST FISH ,CHANNEL CATFISH ,Genetic Variation ,Immunoglobulin genes ,IGL GENES ,biology.organism_classification ,HEAVY-CHAIN ,Isotype ,B-CELLS ,IMMUNE-SYSTEM ,Genes, Immunoglobulin Light Chain ,GENOMIC ORGANIZATION ,030215 immunology - Abstract
International audience; The gene segments encoding antibodies have been studied in many capacities and represent some of the best-characterized gene families in traditional animal disease models (mice and humans). To date, multiple immunoglobulin light chain (IgL) isotypes have been found in vertebrates and it is unclear as to which isotypes might be more primordial in nature. Sequence data emerging from an array of fish genome projects is a valuable resource for discerning complex multigene assemblages in this critical branch point of vertebrate phylogeny. Herein, we have analyzed the genomic organization of medaka (Oryzias latipes) IgL gene segments based on recently released genome data. The medaka IgL locus located on chromosome 11 contains at least three clusters of IgL gene segments comprised of multiple gene assemblages of the kappa light chain isotype. These data suggest that medaka IgL gene segments may undergo both intra- and inter-cluster rearrangements as a means to generate additional diversity. Alignments of expressed sequence tags to concordant gene segments which revealed each of the three IgL clusters are expressed. Collectively, these data provide a genomic framework for IgL genes in medaka and indicate that Ig diversity in this species is achieved from at least three distinct chromosomal regions.
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- 2013
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6. Differential role of nonmuscle myosin II isoforms during blebbing of MCF-7 cells
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Siddhartha S. Jana, Kankan Bhattacharyya, Shamik Sen, Sumit K. Dey, Kaushik Sengupta, Shekhar Saha, Raman K. Singh, Shyamtanu Chattoraj, and Alakesh Das
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0301 basic medicine ,Gene isoform ,Identification ,Myosin light-chain kinase ,Oscillations ,genetic structures ,Biology ,Microtubules ,03 medical and health sciences ,Cell Movement ,Actin Cortex ,Cell Line, Tumor ,Humans ,Protein Isoforms ,Bleb (cell biology) ,Pseudopodia ,Cytoskeleton ,Molecular Biology ,Actin ,Migration ,Nonmuscle Myosin Type IIB ,Heavy-Chain ,Distinct ,Nonmuscle Myosin Type IIA ,fungi ,Requirements ,Cell Biology ,Articles ,Actin cytoskeleton ,eye diseases ,Cell biology ,Actin Cytoskeleton ,Cell Motility ,030104 developmental biology ,MCF-7 Cells ,Mechanism ,sense organs ,Cell Surface Extensions ,Lamellipodium ,Plasma-Membrane - Abstract
One molecular cue that regulates cellular protrusions such as blebbing and lamellipodia in tumor cells has been less explored than other environmental factors. NM II-A induces blebbing and NM II-C1 induces lamellipodia in tumor cells. NM-II isoforms can change the protrusive activity of a tumor cell., Bleb formation has been correlated with nonmuscle myosin II (NM-II) activity. Whether three isoforms of NM-II (NM-IIA, -IIB and -IIC) have the same or differential roles in bleb formation is not well understood. Here we report that ectopically expressed, GFP-tagged NM-II isoforms exhibit different types of membrane protrusions, such as multiple blebs, lamellipodia, combinations of both, or absence of any such protrusions in MCF-7 cells. Quantification suggests that 50% of NM-IIA-GFP–, 29% of NM-IIB-GFP–, and 19% of NM-IIC1-GFP–expressing MCF-7 cells show multiple bleb formation, compared with 36% of cells expressing GFP alone. Of interest, NM-IIB has an almost 50% lower rate of dissociation from actin filament than NM-IIA and –IIC1 as determined by FRET analysis both at cell and bleb cortices. We induced bleb formation by disruption of the cortex and found that all three NM-II-GFP isoforms can reappear and form filaments but to different degrees in the growing bleb. NM-IIB-GFP can form filaments in blebs in 41% of NM-IIB-GFP–expressing cells, whereas filaments form in only 12 and 3% of cells expressing NM-IIA-GFP and NM-IIC1-GFP, respectively. These studies suggest that NM-II isoforms have differential roles in the bleb life cycle.
- Published
- 2016
7. Anomalies in the motion dynamics of long-flagella mutants of Chlamydomonas reinhardtii
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Lalit Borde, Seema Shirolikar, Jacinta S. D’Souza, Dolly K. Khona, Siuli Mukhopadhyay, Aditya K. Dharmadhikari, Kallol Das, Jayashree A. Dharmadhikari, Mustafa J. Motiwalla, Anisha R. Kashyap, Venkatramanan G. Rao, Deepak Mathur, and P. C. Sreekrishna Varma
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Sliding Filament Model ,Axoneme ,Outer Dynein Arms ,Swimming Velocity ,Long-Flagella Mutants ,Movement ,Cells ,Mutant ,Dynein ,Genetic-Analysis ,Biophysics ,Chlamydomonas reinhardtii ,Motility ,Beat (acoustics) ,Flagellum ,Biology ,Dynein Arms ,Microtubules ,Waveforms ,Molecular Biology ,Genetics ,Original Paper ,Chlamydomonas Reinhardtii ,Heavy-Chain ,Dyneins ,Motion Dynamics ,Cell Biology ,biology.organism_classification ,Beat Frequency ,Atomic and Molecular Physics, and Optics ,Length Control ,Flagella ,Bend Propagation ,Mutation ,Ultrastructure ,Doublet - Abstract
Chlamydomonas reinhardtii has long been used as a model organism in studies of cell motility and flagellar dynamics. The motility of the well-conserved '9+2' axoneme in its flagella remains a subject of immense curiosity. Using high-speed videography and morphological analyses, we have characterized long-flagella mutants (lf1, lf2-1, lf2-5, lf3-2, and lf4) of C. reinhardtii for biophysical parameters such as swimming velocities, waveforms, beat frequencies, and swimming trajectories. These mutants are aberrant in proteins involved in the regulation of flagellar length and bring about a phenotypic increase in this length. Our results reveal that the flagellar beat frequency and swimming velocity are negatively correlated with the length of the flagella. When compared to the wild-type, any increase in the flagellar length reduces both the swimming velocities (by 26-57%) and beat frequencies (by 8-16%). We demonstrate that with no apparent aberrations/ultrastructural deformities in the mutant axonemes, it is this increased length that has a critical role to play in the motion dynamics of C. reinhardtii cells, and, provided there are no significant changes in their flagellar proteome, any increase in this length compromises the swimming velocity either by reduction of the beat frequency or by an alteration in the waveform of the flagella.
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- 2012
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8. Monomeric IgA can be produced in planta as efficient as IgG, yet receives different N-glycans
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Maurice Henquet, Dieu-Linh Nguyen, Jaap Bakker, Aska Goverse, Dirk Bosch, Lotte B. Westerhof, Debbie R. van Raaij, Ruud H. P. Wilbers, Cornelis H. Hokke, and Arjen Schots
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Glycosylation ,heavy-chain ,plant ,Plant Science ,N-glycosylation ,Immunoglobulin E ,hybrid immunoglobulin ,Mice ,subcellular-localization ,N-linked glycosylation ,Laboratorium voor Plantenfysiologie ,Laboratorium voor Monoklonale Antistoffen ,biology ,Antibodies, Monoclonal ,Plants, Genetically Modified ,Isotype ,terminal propeptide ,insect cells ,BIOS Applied Metabolic Systems ,Ustekinumab ,Antibody ,Laboratory of Plant Physiology ,IgA ,Biotechnology ,medicine.drug ,Protein Binding ,glycosylation ,medicine.drug_class ,Cell Survival ,monoclonal-antibodies ,recombinant antibodies ,Monoclonal antibody ,Antibodies, Monoclonal, Humanized ,Cell Line ,Antibody Isotype ,Immunoglobulin Idiotypes ,Polysaccharides ,Plant Cells ,Tobacco ,medicine ,Animals ,Humans ,Antigens ,Laboratorium voor Nematologie ,Tumor Necrosis Factor-alpha ,Adalimumab ,Infliximab ,Immunoglobulin A ,Immunoglobulin G ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Immunology ,Proteolysis ,biology.protein ,EPS ,Laboratory of Nematology ,infliximab ,protein ,Agronomy and Crop Science - Abstract
The unique features of IgA, such as the ability to recruit neutrophils and suppress the inflammatory responses mediated by IgG and IgE, make it a promising antibody isotype for several therapeutic applications. However, in contrast to IgG, reports on plant production of IgA are scarce. We produced IgA1¿ and IgG1¿ versions of three therapeutic antibodies directed against pro-inflammatory cytokines in Nicotiana benthamiana: Infliximab and Adalimumab, directed against TNF-a, and Ustekinumab, directed against the interleukin-12p40 subunit. We evaluated antibody yield, quality and N-glycosylation. All six antibodies had comparable levels of expression between 3.5 and 9% of total soluble protein content and were shown to have neutralizing activity in a cell-based assay. However, IgA1¿-based Adalimumab and Ustekinumab were poorly secreted compared to their IgG counterparts. Infliximab was poorly secreted regardless of isotype backbone. This corresponded with the observation that both IgA1¿- and IgG1¿-based Infliximab were enriched in oligomannose-type N-glycan structures. For IgG1¿-based Ustekinumab and Adalimumab, the major N-glycan type was the typical plant complex N-glycan, biantennary with terminal N-acetylglucosamine, ß1,2-xylose and core a1,3-fucose. In contrast, the major N-glycan on the IgA-based antibodies was xylosylated, but lacked core a1,3-fucose and one terminal N-acetylglucosamine. This type of N-glycan occurs usually in marginal percentages in plants and was never shown to be the main fraction of a plant-produced recombinant protein. Our data demonstrate that the antibody isotype may have a profound influence on the type of N-glycan an antibody receives.
- Published
- 2014
9. Most marginal zone B cells in rat express germline encoded Ig V-H genes and are ligand selected
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PERIPHERAL LYMPHOID-TISSUES ,IMMUNOGLOBULIN HEAVY ,ANTIBODY ,HUMAN SPLEEN ,GERMINAL-CENTERS ,BONE-MARROW ,CHAIN VARIABLE REGION ,IMMUNE-RESPONSE ,HEAVY-CHAIN ,ANTIGEN RECEPTOR - Abstract
The present study was performed to analyze whether marginal zone B (MZ-B) cells in nondeliberately immunized adult rats are selected on basis of the specificity of their B cell receptor, and to determine to what extent memory B cells contribute to the MZ-B ell subset. To this end, the Ig PC7183 V-H gene repertoire was studied among V(H)DJ(H)-mu transcripts expressed in four sequential stages of B cell development, of two individual untreated adult rats. B cell subsets, i.e., pro/pre-B cells and newly formed B (NF-B) cells from bone marrow, and recirculating follicular B cells and MZ-B cells from spleen were sorted by flow cytometry, In addition, from one these rats, cells were microdissected from follicular and MZ areas of the spleen and productive PC7183 V-H gene rearrangements were analyzed for the presence of somatic mutations. Sequence analysis reveals that most MZ-B cells in the adult rat, either defined by flow cytometry or by their anatomical location in the spleen, express germline encoded V-H genes (naive MZ-B cells) and a minor fraction (about 20%) of the MZ-B cells carry somatic mutations (memory MZ-B cells), in addition, we show that naive MZ-B cells are a selected population of cells, both based on PC7183 V-H gene repertoire and on the length of the Ig heavy (H) chain complementarity-determining region 3 (H-CDR3) region, i.e., PC7183 V(H)DJ(H)-mu transcripts of MZ-B cells carry significantly shorter H-CDR3 regions than other B cell subsets.
- Published
- 2000
10. Consensus strategy to quantitate malignant cells in myeloma patients is validated in a multicenter study
- Subjects
REACTION PRODUCT ,AQUATICUS DNA-POLYMERASE ,LIMITING DILUTION ,MULTIPLE-MYELOMA ,FLUOROGENIC PROBES ,BONE-MARROW TRANSPLANTATION ,POLYMERASE CHAIN-REACTION ,PERIPHERAL-BLOOD ,3'+EXONUCLEASE+ACTIVITY%22">5'->3' EXONUCLEASE ACTIVITY ,HEAVY-CHAIN - Abstract
Recently the Belgium-Dutch Hematology-Oncology group initiated a multicenter study to evaluate whether myeloma patients treated with intensive chemotherapy benefit from additional peripheral stem cell transplantation. To determine treatment response accurately, we decided to quantitate malignant cells. To test a consensus quantitation strategy, 5 centers independently determined the immunoglobulin heavy chain sequences of patient tumor cells and developed allele-specific oligonucleotides (ASO) and ASO-polymerase chain reaction (PCR). We compared the reproducibility of real-time quantitation with quantitation using limiting dilutions. We distributed DNA samples with a 4-log range of tumor cell concentrations and found average quantitation values deviating 74% and 42% from the input values with real-time PCR (1 center) and limiting dilutions (4 centers), respectively. Within single centers we found an average variation coefficient of 0.74, with limiting dilutions not significantly different from the average 0.82 center-to-center variation coefficient. Within a single center, real-time quantitation proved more reproducible (average variation coefficient, 0.36). Quantification was confirmed in 3 patients during treatment in the protocol. This report shows that real-time PCR or limiting dilution assays can be used for quantitation in a single multicenter trial. We present a consensus strategy that allows an accurate comparison of quantitation data generated in independent centers. (Blood. 2000;96:63-70) (C) 2000 by The American Society of Hematology.
- Published
- 2000
11. Monomeric IgA can be produced in planta as efficient as IgG, yet receives different N-glycans
- Author
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Westerhof, L.B., Wilbers, R.H.P., van Raaij, D.R., Nguyen, D., Goverse, A., Henquet, M.G.L., Hokke, C.H., Bosch, D., Bakker, J., Schots, A., Westerhof, L.B., Wilbers, R.H.P., van Raaij, D.R., Nguyen, D., Goverse, A., Henquet, M.G.L., Hokke, C.H., Bosch, D., Bakker, J., and Schots, A.
- Abstract
The unique features of IgA, such as the ability to recruit neutrophils and suppress the inflammatory responses mediated by IgG and IgE, make it a promising antibody isotype for several therapeutic applications. However, in contrast to IgG, reports on plant production of IgA are scarce. We produced IgA1¿ and IgG1¿ versions of three therapeutic antibodies directed against pro-inflammatory cytokines in Nicotiana benthamiana: Infliximab and Adalimumab, directed against TNF-a, and Ustekinumab, directed against the interleukin-12p40 subunit. We evaluated antibody yield, quality and N-glycosylation. All six antibodies had comparable levels of expression between 3.5 and 9% of total soluble protein content and were shown to have neutralizing activity in a cell-based assay. However, IgA1¿-based Adalimumab and Ustekinumab were poorly secreted compared to their IgG counterparts. Infliximab was poorly secreted regardless of isotype backbone. This corresponded with the observation that both IgA1¿- and IgG1¿-based Infliximab were enriched in oligomannose-type N-glycan structures. For IgG1¿-based Ustekinumab and Adalimumab, the major N-glycan type was the typical plant complex N-glycan, biantennary with terminal N-acetylglucosamine, ß1,2-xylose and core a1,3-fucose. In contrast, the major N-glycan on the IgA-based antibodies was xylosylated, but lacked core a1,3-fucose and one terminal N-acetylglucosamine. This type of N-glycan occurs usually in marginal percentages in plants and was never shown to be the main fraction of a plant-produced recombinant protein. Our data demonstrate that the antibody isotype may have a profound influence on the type of N-glycan an antibody receives.
- Published
- 2014
12. Modulation of Pleurodeles waltl DNA Polymerase mu Expression by Extreme Conditions Encountered during Spaceflight
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Véronique Schenten, Jean-Pol Frippiat, Nathan Guéguinou, Sarah Baatout, Stress, Immunité, Pathogènes (SIMPA), Université de Lorraine (UL), Department of Biomedical Molecular Biology [Ghent], Universiteit Gent = Ghent University [Belgium] (UGENT), and Centre d'Etude de l'Energie Nucléaire (SCK-CEN)
- Subjects
Strand break repair ,Male ,POL-MU ,Heavy-chain ,lcsh:Medicine ,Gene Expression ,Astronomical Sciences ,DNA-Directed DNA Polymerase ,Adaptive Immunity ,Protein oxidation ,Biochemistry ,law.invention ,Protein Carbonylation ,0302 clinical medicine ,Molecular cell biology ,law ,Testis ,Genetics of the Immune System ,lcsh:Science ,Phylogeny ,Genetics ,0303 health sciences ,Lambda ,Multidisciplinary ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Life Support (Space Travel) ,V(D)J recombination ,Gene Expression Regulation, Developmental ,Space Exploration ,LAMBDA ,FAMILY ,Circadian Rhythm ,Nucleic acids ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,STRAND BREAK REPAIR ,Larva ,[SDV.IMM]Life Sciences [q-bio]/Immunology ,Pol-mu ,DNA polymerase mu ,Oxidation-Reduction ,Research Article ,Pleurodeles ,Immunoglobulin gene ,V(D)J RECOMBINATION ,Immunology & infectious disease [D12] [Human health sciences] ,Pleurodeles waltl ,Ligase-iv ,DNA, Complementary ,DNA repair ,HYPERMUTATION ,Cells ,Immunology ,Blotting, Western ,Molecular Sequence Data ,Biophysics ,Somatic hypermutation ,Space Missions ,Spaceflight ,Gene Expression Regulation, Enzymologic ,spaceflight ,Molecular Genetics ,03 medical and health sciences ,DNA directed DNA polymerase mu ,V(d)j recombination ,Animals ,LIGASE-IV ,Family ,Biology ,030304 developmental biology ,Hypermutation ,lcsh:R ,Immunity ,Biology and Life Sciences ,Computational Biology ,Radiobiology ,DNA ,Sequence Analysis, DNA ,VDJ recombination ,Space Flight ,biology.organism_classification ,Salamandridae ,HEAVY-CHAIN ,microgravity ,Immunologie & maladie infectieuse [D12] [Sciences de la santé humaine] ,Immune-system ,CELLS ,IMMUNE-SYSTEM ,lcsh:Q ,Space Station ,Transcriptome ,030217 neurology & neurosurgery - Abstract
International audience; DNA polymerase µ is involved in DNA repair, V(D)J recombination and likely somatic hypermutation of immunoglobulin genes. Our previous studies demonstrated that spaceflight conditions affect immunoglobulin gene expression and somatic hypermutation frequency. Consequently, we questioned whether Polμ expression could also be affected. To address this question, we characterized Polμ of the Iberian ribbed newt Pleurodeles waltl and exposed embryos of that species to spaceflight conditions or to environmental modifications corresponding to those encountered in the International Space Station. We noted a robust expression of Polμ mRNA during early ontogenesis and in the testis, suggesting that Polμ is involved in genomic stability. Full-length Polμ transcripts are 8–9 times more abundant in P. waltl than in humans and mice, thereby providing an explanation for the somatic hypermutation predilection of G and C bases in amphibians. Polμ transcription decreases after 10 days of development in space and radiation seem primarily involved in this down-regulation. However, space radiation, alone or in combination with a perturbation of the circadian rhythm, did not affect Polμ protein levels and did not induce protein oxidation, showing the limited impact of radiation encountered during a 10-day stay in the International Space Station.
- Published
- 2013
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13. Aberrant cGMP-binding activity in non-chemotactic Dictyostelium discoideum mutants
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Hidekazu Kuwayama, Peter J.M. van Haastert, Gerhard T. Viel, Shuji Ishida, and Groningen Biomolecular Sciences and Biotechnology
- Subjects
CYCLIC-GMP ,Mutant ,SIGNAL-TRANSDUCTION ,FOLIC-ACID ,CYTOSKELETON ,CYCLIC ADENOSINE 3' ,Dictyostelium discoideum ,Cyclic adenosine 3′,5′-monophosphate ,chemistry.chemical_compound ,cyclic guanosine 3′,5′-monophosphate ,CYCLIC GUANOSINE 3' ,Animals ,Dictyostelium ,Binding site ,PHOSPHORYLATION ,Molecular Biology ,Gene ,Cyclic GMP ,5'-MONOPHOSPHATE ,AMP ,CGMP binding ,Binding Sites ,biology ,CYCLIC ADENOSINE 3',5'-MONOPHOSPHATE ,MYOSIN-II ,Phosphodiesterase ,Cell Biology ,ASSOCIATION ,biology.organism_classification ,Molecular biology ,HEAVY-CHAIN ,Kinetics ,CYCLIC GUANOSINE 3',5'-MONOPHOSPHATE ,Biochemistry ,chemistry ,Mutation ,PHOSPHODIESTERASE ,DNA - Abstract
The kinetics of cGMP-binding to the major cGMP-binding activity in Dictyostelium, were investigated in 10 non-chemotactic mutants (KI mutants; KI-1 similar to 10). A wild-type cell contains about 3000 binding sites with a K-d of 1.5 nM. cGMP may dissociate from these binding sites with fast (F-type) or slow (S-type) kinetics, and DNA has been shown to promote the conversion of F- to S-type of cGMP-binding. The 10 mutants were placed in 4 classes, based on equilibrium and non-equilibrium binding properties and the effect of DNA. Class I mutants (KI-I, 3 and 8) have normal cGMP-binding properties. Class II mutants (KI-2, 6 and 7) show increased K-d values but nearly normal B-max, normal F/S ratio and normal effects of DNA. Class III mutants (KI-4, 5 and 10) have a strongly decreased K-d and increased B-max, nearly all binding sites are of the S-type and DNA does not affect the binding; apparently these mutants have a cGMP-binding protein locked in the S-form. cGMP-binding in class IV mutant (KI-9) is normal except that the number of binding sites is increased about S-fold. The finding of seven mutants with altered cGMP-binding in 10 non-chemotactic mutants suggests that the cGMP-binding activity plays an important role in the chemotactic signal transduction pathway.
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- 1995
14. Non-Chemotactic Dictyostelium discoideum Mutants with Altered cGMP Signal Transduction
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S. Ishida, P. J. M. Van Haastert, Hidekazu Kuwayama, and Groningen Biomolecular Sciences and Biotechnology
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5-TRISPHOSPHATE ,G protein ,Genetic Linkage ,Mutant ,Genes, Fungal ,CYCLIC-AMP ,Inositol 1,4,5-Trisphosphate ,FOLIC-ACID ,CYTOSKELETON ,Biology ,Second Messenger Systems ,Dictyostelium discoideum ,Adenylyl cyclase ,chemistry.chemical_compound ,Folic Acid ,3',5'-Cyclic-GMP Phosphodiesterases ,GTP-Binding Proteins ,INOSITOL 1 ,Animals ,Dictyostelium ,Cyclic GMP ,Chemotaxis ,MYOSIN-II ,Phosphodiesterase ,Cell Biology ,Articles ,biology.organism_classification ,HEAVY-CHAIN ,Cell biology ,Biochemistry ,chemistry ,Guanylate Cyclase ,AGGREGATION-DEFICIENT MUTANTS ,Mutation ,PDE10A ,Signal transduction ,CAMP ,CELLULAR SLIME-MOLDS ,PHOSPHODIESTERASE ,Signal Transduction - Abstract
Folic acid and cAMP are chemoattractants in Dictyostelium discoideum, which bind to different surface receptors. The signal is transduced from the receptors via different G proteins into a common pathway which includes guanylyl cyclase and acto-myosin. To investigate this common pathway, ten mutants which do not react chemotactically to both cAMP and folic acid were isolated with a simple new chemotactic assay. Genetic analysis shows that one of these mutants (KI-10) was dominant; the other nine mutants were recessive, and comprise nine complementation groups.In wild-type cells, the chemoattractants activate adenylyl cyclase, phospholipase C, and guanylyl cyclase in a transient manner. In mutant cells the formation of cAMP and IP3 were generally normal, whereas the cGMP response was altered in most of the ten mutants. Particularly, mutant KI-8 has strongly reduced basal guanylyl cyclase activity; the enzyme is present in mutant KI-10, but can not be activated by cAMP or folic acid. The cGMP response of five other mutants is altered in either magnitude, dose dependency, or kinetics.These observations suggest that the second messenger cGMP plays a key role in chemotaxis in Dictyostelium.
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- 1993
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- View/download PDF
15. The role of molecular analysis of immunoglobulin and T cell receptor gene rearrangements in the diagnosis of lymphoproliferative disorders
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HODGKINS-DISEASE ,SOUTHERN BLOT ANALYSIS ,CLONALITY ,clonality analysis ,LIGHT-CHAIN ,Southern blotting ,PATTERNS ,LYMPHOMA ,HEAVY-CHAIN ,immunoglobulin and T cell receptor genes ,RECOMMENDATIONS ,B cell lymphoma - Abstract
Aims-To investigate whether the analysis of immunoglobulin (Ig)/T cell receptor (TCR) rearrangements is useful in the diagnosis of lymphoproliferative disorders. Methods-In a series of 107 consecutive cases with initial suspicion of non-Hodgkin's lymphoma (NHL), Southern blot (SB) analysis of Ig/TCR rearrangements was performed. Results-In 98 of 1.00 histopathologically conclusive cases, Ig/TCR gene results were concordant. In one presumed diffuse large B cell lymphoma (DLCL) and one follicular lymphoma (FL) case no clonality could be detected by SE analysis, or by polymerase chain reaction (PCR) at second stage. In the DLCL, sampling error might have occurred; the FL was revised after an initial diagnosis of reactivity. In many of the histopathologically inconclusive cases Ig/ TCR gene SE analysis was helpful, giving support for the histopathological suspicion. However, because of a lack of (clinical) follow up data this could not be confirmed in a few cases. Conclusions-Experienced haemato-pathologists or a pathologist panel can diagnose malignant versus reactive lesions in most cases without the need for Ig/TCR gene analysis and can select the 5-10% of cases that might benefit from molecular clonality studies.
- Published
- 2001
16. Respiratory failure with diffuse bronchiectases and cryoglobulinaemia
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A Vasiljevic, D. Meyronet, Nicolas Girard, Vincent Cottin, J.F. Cordier, Françoise Thivolet-Béjui, L. Falchero, Hospices Civils de Lyon (HCL), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon, Rétrovirus et Pathologie Comparée (RPC), Institut National de la Recherche Agronomique (INRA)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL), Centre Hospitalier de Villefranche sur Saône, and Partenaires INRAE
- Subjects
Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Vital capacity ,FEATURES ,[SDV]Life Sciences [q-bio] ,DISEASE ,03 medical and health sciences ,FEV1/FVC ratio ,Immunoglobulin kappa-Chains ,0302 clinical medicine ,medicine ,Bronchial Biopsy ,Humans ,PULMONARY NODULES ,ComputingMilieux_MISCELLANEOUS ,Lung ,medicine.diagnostic_test ,business.industry ,Respiratory disease ,LIGHT-CHAIN DEPOSITION ,Middle Aged ,medicine.disease ,HEAVY-CHAIN ,3. Good health ,Bronchiectasis ,Bone marrow examination ,medicine.anatomical_structure ,PLASMACYTOMA ,030228 respiratory system ,Respiratory failure ,Cryoglobulinemia ,Immunoglobulin M ,OF-THE-LITERATURE ,030220 oncology & carcinogenesis ,IMMUNOGLOBULIN ,Female ,Waldenstrom Macroglobulinemia ,business ,Respiratory Insufficiency ,LUNG ,Respiratory tract - Abstract
A 48-yr-old nonsmoking female presented with a 5-yr history of recurrent bronchitis with progressive exercise dyspnoea. She had been diagnosed with a small monoclonal gammopathy of undermined significance (MGUS) 6 yrs previously. Inspiratory vital capacity was 4.7 L (125% predicted) and forced expiratory volume in one second/forced vital capacity (FVC) ratio was 79%. Carbon monoxide transfer factor was markedly impaired (35% pred), and arterial oxygen tension ( P a,O2) decreased from 9.2 to 6.0 kPa at exercise (40 W, 10 min). A thoracic computed tomography (CT) scan was performed (fig. 1⇓). Fibreoptic bronchoscopy found inflammation of the bronchial mucosa with candle stain-like deposits on the trachea and large bronchi, without any purulent secretion within the respiratory tract (fig. 2⇓). The histopathological aspect of bronchial biopsies is shown in figure 3⇓. Blood tests disclosed type I cryoglobulinaemia composed of a 32 g·L−1 monoclonal immunoglobulin (Ig)Mκ serum component (at 37°C). Blood cell count was normal. Bone marrow examination showed malignant lymphoplasmacytic cells representing 30% of total cells, with a monotypic surface expression of IgMκ. The C-reactive protein level was 21 mg·L−1. Extensive renal, cardiac and hepatic evaluations were normal. As severe hypoxaemia and reduction of carbon monoxide transfer factor were unexplained, the patient underwent videothoracoscopic lung biopsies. Fig. 1— Thoracic computed tomography scan. Fig. 2— Fibreoptic bronchoscopy. Arrow shows candle stain-like deposits. Fig. 3— a) Bronchial biopsy of candle-stain like lesions stained by haematoxylin-eosin-saffron. Submucosal abnormal deposits with concentric pattern around the vessels (black arrow), arranging in cords or ribbon-like structures in the interstitium (black dashed arrow) or in an organoid, raspberry-like fashion in smooth muscle fascicles (black arrowhead). b) Bronchial biopsy; perivascular deposits with negative Congo red dye staining. c) Direct anti-κ-light chain immunofluorescence in bronchial biopsy showing positivity of perivascular (white arrow) and interstitial (white dashed arrow) deposits, and epithelial …
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- 2008
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17. MOLECULAR-BIOLOGY OF CLOSTRIDIAL TOXINS - EXPRESSION OF MESSENGER-RNAS ENCODING TETANUS AND BOTULINUM NEUROTOXINS IN APLYSIA NEURONS
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XENOPUS-OOCYTES ,INHIBITS EXOCYTOSIS ,TRANSMITTER RELEASE ,INTRACELLULAR INJECTION ,DEGRADATION ,HEAVY-CHAIN ,RECEPTORS ,nervous system ,ESCHERICHIA-COLI ,RICH SEQUENCES ,LIGHT CHAIN ,NEUROTRANSMITTER RELEASE ,TRANSLATION ,CHOLINERGIC SYNAPSE - Abstract
mRNAs encoding the light chain of tetanus and botulinum neurotoxins were transcribed, in vitro, from the cloned and specifically truncated genes of Clostridium tetani and Clostridium botulinum, respectively, and injected into presynaptic identified cholinergic neurons of the buccal ganglia of Aplysia californica. The size of the current response measured in the voltage clamped postsynaptic neuron was taken as indicator of the quantity of acetylcholine released. Depression of neurotransmitter release similar to that observed when native light chains of the two toxins were injected but needing an additional delay of 30 to 40 minutes, demonstrated a successful expression of a foreign mRNA injected into a neuron in situ.
- Published
- 1990
18. Kidins220/ARMS Is Transported by a Kinesin-1– based Mechanism Likely to be Involved in Neuronal Differentiation
- Author
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Veronika E. Neubrand, Fabrizia Cesca, Giampietro Schiavo, Michael Way, Timothy P. Newsome, Aurora Bracale, Cancer Research UK, Bracale, A, Cesca, F, Neubrand, Ve, Newsome, Tp, Way, M, and Schiavo, G
- Subjects
KINESIN LIGHT-CHAIN ,Neurite ,Cellular differentiation ,Amino Acid Motifs ,Molecular Sequence Data ,Gene Expression ,Kinesins ,MEMBRANE-SPANNING PROTEIN ,MOLECULAR MOTORS ,Biology ,PC12 Cells ,SIGNALING PATHWAYS ,Nerve Growth Factor ,TETANUS TOXIN ,Animals ,Humans ,Ankyrin ,Amino Acid Sequence ,PROTEIN-KINASE-D ,Phosphorylation ,Protein kinase A ,education ,Molecular Biology ,Axonal transport ,Neurons ,chemistry.chemical_classification ,education.field_of_study ,ACTIN-BASED MOTILITY ,Membrane Proteins ,Cell Differentiation ,Articles ,Cell Biology ,Phosphoproteins ,HEAVY-CHAIN ,VACCINIA VIRUS ,Protein Structure, Tertiary ,Rats ,Transport protein ,Cell biology ,Protein Transport ,Tetratricopeptide ,chemistry ,Kinesin light chain 1 ,Kinesin ,Mitogen-Activated Protein Kinases ,Microtubule-Associated Proteins ,HeLa Cells ,Protein Binding - Abstract
Kinase D-interacting substrate of 220 kDa/ankyrin repeat-rich membrane spanning (Kidins220/ARMS) is a conserved membrane protein mainly expressed in brain and neuroendocrine cells, which is a downstream target of the signaling cascades initiated by neurotrophins and ephrins. We identified kinesin light chain 1 (KLC1) as a binding partner for Kidins220/ARMS by a yeast two-hybrid screen. The interaction between Kidins220/ARMS and the kinesin-1 motor complex was confirmed by glutathione S-transferase-pull-down and coimmunoprecipitation experiments. In addition, Kidins220/ARMS and kinesin-1 were shown to colocalize in nerve growth factor (NGF)-differentiated PC12 cells. Using Kidins220/ARMS and KLC1 mutants, we mapped the regions responsible for the binding to a short sequence of Kidins220/ARMS, termed KLC-interacting motif (KIM), which is sufficient for the interaction with KLC1. Optimal binding of KIM requires a region of KLC1 spanning both the tetratricopeptide repeats and the heptad repeats, previously not involved in cargo recognition. Overexpression of KIM in differentiating PC12 cells impairs the formation and transport of EGFP-Kidins220/ARMS carriers to the tips of growing neurites, leaving other kinesin-1 dependent processes unaffected. Furthermore, KIM overexpression interferes with the activation of the mitogen-activated protein kinase signaling and neurite outgrowth in NGF-treated PC12 cells. Our results suggest that Kidins220/ARMS-positive carriers undergo a kinesin-1-dependent transport linked to neurotrophin action., Cancer Research UK.
- Published
- 2007
19. Purification and quantification of heavy-chain antibodies from the milk of bactrian camels.
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Yao, Hongqiang, Yu, Siriguleng, Zhang, Min, Li, Yi, Yao, Jirimutu, and Meng, He
- Subjects
- *
IMMUNOGLOBULINS , *BACTRIAN camel , *SODIUM dodecyl sulfate , *CAMEL milk , *BLOOD sugar , *SALT - Abstract
Camel milk has a unique composition with naturally occurring heavy-chain antibodies (HCAbs), which exert rehabilitating potencies in infection and immunity. To characterize HCAb in camel milk, immunoglobulin G (IgG) was isolated from the milk of Camelus bactrianus by a combination of affinity chromatography and sodium dodecyl sulfate polyacrylamide gel electrophoresis to purify and size-fractionate protein A and protein G, which were further identified by Western blotting, and were quantified by bicinchoninic acid (BCA) and ELISA. The results indicated that IgG1 fraction contains molecules of 50 kDa heavy chains and 36 kDa light chains. The HCAbs (IgG2 and IgG3 fractions) devoid of light chains, contain heavy chains of 45 kDa and 43 kDa, respectively, the amounts of which were significantly higher than that of the IgG1 in the milk of bactrian camels. Above all, we revealed the considerable amounts of HCAbs in the milk of bactrian camels, and developed a novel method for their purification and quantification. These findings provide the basis for developing potential effects of camel milk and its interface with the dairy industry, as well as future investigations of HCAb and its roles in human health and diseases. [ABSTRACT FROM AUTHOR]
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- 2017
- Full Text
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20. Different mechanisms of cyclin D1 overexpression in multiple myeloma revealed by fluorescence in situ hybridization and quantitative analysis of mRNA levels
- Author
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Katja Specht, Falko Fend, Marcus Kremer, Heinz Höfler, Leticia Quintanilla-Martinez, Philip M. Kluin, Eugenia Haralambieva, Ina Koch, Raju Tomer, Karin Bink, Sonja Mandl-Weber, Ed Schuuring, and Faculteit Medische Wetenschappen/UMCG
- Subjects
medicine.medical_specialty ,Cyclin D ,Immunology ,Gene Dosage ,Chromosomal translocation ,Osteolysis ,Biochemistry ,Translocation, Genetic ,Cyclin D1 ,NUMERICAL CHROMOSOME-ABERRATIONS ,Proto-Oncogene Proteins ,medicine ,Humans ,RNA, Messenger ,TRANSLOCATIONS ,BREAKPOINTS ,In Situ Hybridization, Fluorescence ,Chromosomes, Human, Pair 14 ,Oncogene Proteins ,MANTLE CELL LYMPHOMA ,Polysomy ,biology ,Oncogene ,medicine.diagnostic_test ,IDENTIFICATION ,Chromosomes, Human, Pair 11 ,T(11/14)(Q13 ,Cytogenetics ,REARRANGEMENTS ,Cell Biology ,Hematology ,medicine.disease ,T(11/14)(Q13,Q32) ,Molecular biology ,HEAVY-CHAIN ,GENE ,Reverse transcription polymerase chain reaction ,Q32) ,biology.protein ,VISUALIZATION ,Multiple Myeloma ,Fluorescence in situ hybridization - Abstract
The t(11;14)(q13;q32) is the most com- mon translocation in multiple myeloma (MM), resulting in up-regulation of cyclin D1. We used a segregation fluorescence in situ hybridization (FISH) assay to de- tect t(11;14) breakpoints in primary MM cases and real-time reverse transcriptase– polymerase chain reaction (RT-PCR) to quantify cyclin D1 and MYEOV (myeloma overexpressed) expression, another puta- tive oncogene located on chromosome 11q13. High levels of cyclin D1 mRNA (cyclin D1/TBP [TATA box binding pro- tein] ratio > 95) were found exclusively in the presence of a t(11;14) translocation (11/48 cases; P < .00001). In addition, a subgroup of MM cases (15/48) with inter- mediate to low cyclin D1 mRNA (cyclin D1/TBP ratio between 2.3 and 20) was identified. FISH analysis ruled out a t(11; 14) translocation and 11q13 amplification in these cases; however, in 13 of 15 patients a chromosome 11 polysomy was demonstrated ( P < .0001). These results indicate an effect of gene dosage as an alternative mechanism of cyclin D1 de- regulation in MM. The absence of chromo- some 11 abnormalities in 2 of 15 patients with intermediate cyclin D1 expression supports that there are presumably other mechanism(s) of cyclin D1 deregulation in MM patients. Our data indicate that deregulation of MYEOV is not favored in MM and further strengthens the role of cyclin D1 overexpression in lymphoid ma- lignancies with a t(11;14)(q13;q32) trans- location.
- Published
- 2004
21. Kidins220/ARMS Is Transported by a Kinesin-1– based Mechanism Likely to be Involved in Neuronal Differentiation
- Author
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Cancer Research UK, Bracale, Aurora, Cesca, Fabrizia, Neubrand, Veronika E., Newsome, Timothy P., Way, Michael, Schiavo, Giampietro, Cancer Research UK, Bracale, Aurora, Cesca, Fabrizia, Neubrand, Veronika E., Newsome, Timothy P., Way, Michael, and Schiavo, Giampietro
- Abstract
Kinase D-interacting substrate of 220 kDa/ankyrin repeat-rich membrane spanning (Kidins220/ARMS) is a conserved membrane protein mainly expressed in brain and neuroendocrine cells, which is a downstream target of the signaling cascades initiated by neurotrophins and ephrins. We identified kinesin light chain 1 (KLC1) as a binding partner for Kidins220/ARMS by a yeast two-hybrid screen. The interaction between Kidins220/ARMS and the kinesin-1 motor complex was confirmed by glutathione S-transferase-pull-down and coimmunoprecipitation experiments. In addition, Kidins220/ARMS and kinesin-1 were shown to colocalize in nerve growth factor (NGF)-differentiated PC12 cells. Using Kidins220/ARMS and KLC1 mutants, we mapped the regions responsible for the binding to a short sequence of Kidins220/ARMS, termed KLC-interacting motif (KIM), which is sufficient for the interaction with KLC1. Optimal binding of KIM requires a region of KLC1 spanning both the tetratricopeptide repeats and the heptad repeats, previously not involved in cargo recognition. Overexpression of KIM in differentiating PC12 cells impairs the formation and transport of EGFP-Kidins220/ARMS carriers to the tips of growing neurites, leaving other kinesin-1 dependent processes unaffected. Furthermore, KIM overexpression interferes with the activation of the mitogen-activated protein kinase signaling and neurite outgrowth in NGF-treated PC12 cells. Our results suggest that Kidins220/ARMS-positive carriers undergo a kinesin-1-dependent transport linked to neurotrophin action.
- Published
- 2007
22. Clathrin promotes incorporation of cargo into coated pits by activation of the AP2 adaptor mu 2 kinase
- Author
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Jackson, A. P., Flett, A., Smythe, C., Hufton, L., Wettey, F. R., Smythe, E., Jackson, Antony [0000-0002-2895-7387], and Apollo - University of Cambridge Repository
- Subjects
phosphorylation ,SORTING SIGNALS ,PROTEIN-KINASES ,food and beverages ,regulation ,macromolecular substances ,ENDOCYTOSIS IN-VITRO ,HEAVY-CHAIN ,environment and public health ,VESICLES ,BINDING-SITE ,endocytosis ,subunit ,AP-2 COMPLEXES ,MEDIATED ENDOCYTOSIS ,sorting ,COATED VESICLES - Abstract
Endocytic cargo such as the transferrin receptor is incorporated into clathrin-coated pits by associating, via tyrosine-based motifs, with the AP2 complex. Cargo-AP2 interactions occur via the mu2 subunit of AP2, which needs to be phosphorylated for endocytosis to occur. The most likely role for mu2 phosphorylation is in cargo recruitment because mu2 phosphorylation enhances its binding to internalization motifs. Here, we investigate the control of mu2 phosphorylation. We identify clathrin as a specific activator of the mu2 kinase and, in permeabilized cells, we show that ligand sequestration, driven by exogenous clathrin, results in elevated levels of mu2 phosphorylation. Furthermore, we show that AP2 containing phospho-mu2 is mainly associated with assembled clathrin in vivo, and that the level of phospho-mu2 is strongly reduced in a chicken B cell line depleted of clathrin heavy chain. Our results imply a central role for clathrin in the regulation of cargo selection via the modulation of phospho-mu2 levels.
- Published
- 2003
23. The role of molecular analysis of immunoglobulin and T cell receptor gene rearrangements in the diagnosis of lymphoproliferative disorders
- Author
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J. H. J. M. Van Krieken, L.W.M.A. Vrints, J. J. M. Van Dongen, Jan Willem Coebergh, Anthonie Willem Langerak, Ingrid L. M. Wolvers-Tettero, E Schuuring, A.H. Mulder, Ph. M. Kluin, and E. Kerkhof
- Subjects
Pathology ,medicine.medical_specialty ,CLONALITY ,Immunologische ontstekingsprocessen in de nier ,Short Report ,Follicular lymphoma ,Lymphoproliferative disorders ,Biology ,Gene Rearrangement, T-Lymphocyte ,Immunoglobulin light chain ,RECOMMENDATIONS ,Pathology and Forensic Medicine ,Diagnosis, Differential ,clonality analysis ,Inflammatory reactions in the kidneys ,medicine ,LYMPHOMA ,Humans ,Prospective Studies ,B-cell lymphoma ,HODGKINS-DISEASE ,LIGHT-CHAIN ,Genes, Immunoglobulin ,Southern blotting ,Lymphoma, Non-Hodgkin ,T-cell receptor ,General Medicine ,Gene rearrangement ,medicine.disease ,HEAVY-CHAIN ,Lymphoproliferative Disorders ,Lymphoma ,B cell lymphoma ,Blotting, Southern ,SOUTHERN BLOT ANALYSIS ,PATTERNS ,Diffuse large B-cell lymphoma ,immunoglobulin and T cell receptor genes ,Follow-Up Studies - Abstract
Aims—To investigate whether the analysis of immunoglobulin (Ig)/T cell receptor (TCR) rearrangements is useful in the diagnosis of lymphoproliferative disorders. Methods—In a series of 107 consecutive cases with initial suspicion of non-Hodgkin's lymphoma (NHL), Southern blot (SB) analysis of Ig/TCR rearrangements was performed. Results—In 98 of 100 histopathologically conclusive cases, Ig/TCR gene results were concordant. In one presumed diffuse large B cell lymphoma (DLCL) and one follicular lymphoma (FL) case no clonality could be detected by SB analysis, or by polymerase chain reaction (PCR) at second stage. In the DLCL, sampling error might have occurred; the FL was revised after an initial diagnosis of reactivity. In many of the histopathologically inconclusive cases Ig/TCR gene SB analysis was helpful, giving support for the histopathological suspicion. However, because of a lack of (clinical) follow up data this could not be confirmed in a few cases. Conclusions—Experienced haematopathologists or a pathologist panel can diagnose malignant versus reactive lesions in most cases without the need for Ig/TCR gene analysis and can select the 5–10% of cases that might benefit from molecular clonality studies. Key Words: B cell lymphoma • immunoglobulin and T cell receptor genes • clonality analysis • Southern blotting
- Published
- 2001
24. Most marginal zone B cells in rat express germline encoded Ig V-H genes and are ligand selected
- Author
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Dammers, PM, Visser, A, Popa, ER, Nieuwenhuis, P, Kroese, FGM, Cell Biochemistry, Translational Immunology Groningen (TRIGR), and Restoring Organ Function by Means of Regenerative Medicine (REGENERATE)
- Subjects
PERIPHERAL LYMPHOID-TISSUES ,IMMUNOGLOBULIN HEAVY ,ANTIBODY ,HUMAN SPLEEN ,GERMINAL-CENTERS ,BONE-MARROW ,CHAIN VARIABLE REGION ,IMMUNE-RESPONSE ,HEAVY-CHAIN ,ANTIGEN RECEPTOR - Abstract
The present study was performed to analyze whether marginal zone B (MZ-B) cells in nondeliberately immunized adult rats are selected on basis of the specificity of their B cell receptor, and to determine to what extent memory B cells contribute to the MZ-B ell subset. To this end, the Ig PC7183 V-H gene repertoire was studied among V(H)DJ(H)-mu transcripts expressed in four sequential stages of B cell development, of two individual untreated adult rats. B cell subsets, i.e., pro/pre-B cells and newly formed B (NF-B) cells from bone marrow, and recirculating follicular B cells and MZ-B cells from spleen were sorted by flow cytometry, In addition, from one these rats, cells were microdissected from follicular and MZ areas of the spleen and productive PC7183 V-H gene rearrangements were analyzed for the presence of somatic mutations. Sequence analysis reveals that most MZ-B cells in the adult rat, either defined by flow cytometry or by their anatomical location in the spleen, express germline encoded V-H genes (naive MZ-B cells) and a minor fraction (about 20%) of the MZ-B cells carry somatic mutations (memory MZ-B cells), in addition, we show that naive MZ-B cells are a selected population of cells, both based on PC7183 V-H gene repertoire and on the length of the Ig heavy (H) chain complementarity-determining region 3 (H-CDR3) region, i.e., PC7183 V(H)DJ(H)-mu transcripts of MZ-B cells carry significantly shorter H-CDR3 regions than other B cell subsets.
- Published
- 2000
25. cGMP as second messenger during Dictyostelium chemotaxis
- Author
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P. J. M. Van Haastert and Hidekazu Kuwayama
- Subjects
CYCLIC-GMP ,Receptors, Peptide ,Biophysics ,SIGNAL-TRANSDUCTION ,PROTEIN ,adaptation ,FOLIC-ACID ,macromolecular substances ,Biochemistry ,Second Messenger Systems ,Adenylyl cyclase ,chemistry.chemical_compound ,PHOSPHODIESTERASE ACTIVITY ,Structural Biology ,GTP-Binding Proteins ,GUANYLATE-CYCLASE ,Myosin ,Genetics ,Animals ,Dictyostelium ,Receptors, Immunologic ,Molecular Biology ,Cyclic GMP ,biology ,guanylyl cyclase ,DISCOIDEUM MUTANTS ,Chemotaxis ,Cell Biology ,Water-Electrolyte Balance ,biology.organism_classification ,HEAVY-CHAIN ,Receptors, Formyl Peptide ,Cell biology ,chemistry ,CALCIUM-IONS ,Guanylate Cyclase ,Second messenger system ,osmotic stress ,PDE10A ,Signal transduction ,signal transduction ,Intracellular - Abstract
The chemoattractant cAMP induces directed cell locomotion in Dictyostelium cells. Several second messenger pathways are activated upon binding of cAMP to G-protein-coupled receptors, including adenylyl cyclase, guanylyl cyclase, phospholipase C, and the opening of plasma membrane Ca2+ channels. These second messenger responses are unaltered in many chemotactic mutants, except for the cGMP response, Activation of guanylyl cyclase depends on G-proteins and is regulated by a cGMP-binding protein in a complex manner. This cGMP-binding protein also mediates intracellular functions of cGMP to activate a PKC-related kinase that phosphorylates myosin II heavy chain, thereby allowing myosin filaments to rearrange during cell movement. (C) 1997 Federation of European Biochemical Societies.
- Published
- 1997
26. Fibre type-specific and nerve-dependent regulation of myosin light chain 1 slow promoter in regenerating muscle
- Author
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Jerković, Romana, Vitadello, M., Kelly, R., Buckingham, M., and Schiaffino, S.
- Subjects
skeletal-muscle ,transgenic mice ,gene-transfer ,heavy-chain ,expression ,cat - Abstract
The regulation of a slow muscle gene, the myosin light chain 1 slow/ventricular gene, has been studied by in vivo transfection into regenerating rat skeletal muscle. Constructs containing portions of the myosin light chain 1 slow/ventricular promoter linked to reporter genes were injected into fast and slow muscles 3 days after muscle injury by bupivacaine injection, and reporter gene activity was analysed after 10 days. We report that a sequence in the 5' flanking region of the myosin light chain 1 slow/ventricular gene is able to direct slow muscle-specific regulation of reporter genes, and that the expression of the transgene, like that of the corresponding endogenous gene, is dependent on intact nerve. This study validates the use of regenerating muscle as a model for studying muscle gene regulation and is the first demonstration of a myosin gene promoter regulated by nerve activity.
- Published
- 1997
27. A new kinesin-like protein (Klp1) localized to a single microtubule of the Chlamydomonas flagellum
- Author
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Bernstein, M., Beech, P., Katz, S. G., Rosenbaum, J. L., Bernstein, M., Beech, P., Katz, S. G., and Rosenbaum, J. L.
- Published
- 1994
28. MOLECULAR-BIOLOGY OF CLOSTRIDIAL TOXINS - EXPRESSION OF MESSENGER-RNAS ENCODING TETANUS AND BOTULINUM NEUROTOXINS IN APLYSIA NEURONS
- Author
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MOCHIDA, S, POULAIN, B, EISEL, U, BINZ, T, KURAZONO, H, NIEMANN, H, TAUC, L, and Eisel lab
- Subjects
XENOPUS-OOCYTES ,INHIBITS EXOCYTOSIS ,TRANSMITTER RELEASE ,INTRACELLULAR INJECTION ,DEGRADATION ,HEAVY-CHAIN ,RECEPTORS ,nervous system ,ESCHERICHIA-COLI ,RICH SEQUENCES ,LIGHT CHAIN ,NEUROTRANSMITTER RELEASE ,TRANSLATION ,CHOLINERGIC SYNAPSE - Abstract
mRNAs encoding the light chain of tetanus and botulinum neurotoxins were transcribed, in vitro, from the cloned and specifically truncated genes of Clostridium tetani and Clostridium botulinum, respectively, and injected into presynaptic identified cholinergic neurons of the buccal ganglia of Aplysia californica. The size of the current response measured in the voltage clamped postsynaptic neuron was taken as indicator of the quantity of acetylcholine released. Depression of neurotransmitter release similar to that observed when native light chains of the two toxins were injected but needing an additional delay of 30 to 40 minutes, demonstrated a successful expression of a foreign mRNA injected into a neuron in situ.
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- 1990
29. Mutations in BICD2, which Encodes a Golgin and Important Motor Adaptor, Cause Congenital Autosomal-Dominant Spinal Muscular Atrophy
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Klaus Zerres, Helenius J. Schelhaas, R. Brian Lowry, Irmgard Hölker, Aad Verrips, Henny H. Lemmink, Sascha Vermeer, Christian Gilissen, Richard J. Sinke, Maartje Pennings, Lutz Garbes, Joris A. Veltman, Kornelia Neveling, Linda MacLaren, Lilian A. Martinez-Carrera, Brunhilde Wirth, Catharina J.M. Frijns, Hans Scheffer, Seyyedmohsen Hosseinibarkooie, Rowdy Meijer, Oksana Suchowersky, Sabine Rudnik-Schöneborn, Margot G E Te Riele, Angelien Heister, Faculteit Medische Wetenschappen/UMCG, and Ethical, Legal, Social Issues in Genetics (ELSI)
- Subjects
Male ,MISSENSE MUTATIONS ,Genetic Linkage ,Golgi Apparatus ,PROTEIN ,SMN1 ,AMYOTROPHIC-LATERAL-SCLEROSIS ,0302 clinical medicine ,Genetics(clinical) ,Amyotrophic lateral sclerosis ,Conserved Sequence ,Genetics (clinical) ,Exome sequencing ,Genes, Dominant ,Genetics ,0303 health sciences ,BICAUDAL-D ,SMA ,Pedigree ,Child, Preschool ,symbols ,Female ,Microtubule-Associated Proteins ,DYNACTIN ,Adult ,DCN MP - Plasticity and memory ,Mutation, Missense ,Biology ,Polymorphism, Single Nucleotide ,Genomic disorders and inherited multi-system disorders DCN MP - Plasticity and memory [IGMD 3] ,Muscular Atrophy, Spinal ,Genomic disorders and inherited multi-system disorders [IGMD 3] ,03 medical and health sciences ,symbols.namesake ,Report ,medicine ,Humans ,MRNA transport ,Amino Acid Sequence ,MARIE-TOOTH-DISEASE ,Genetic Association Studies ,030304 developmental biology ,Base Sequence ,NEUROPATHY ,Sequence Analysis, DNA ,Spinal muscular atrophy ,Fibroblasts ,Golgi apparatus ,medicine.disease ,BICD2 ,HEAVY-CHAIN ,GENE ,Molecular biology ,TRANSPORT ,Carrier Proteins ,Genetics and epigenetic pathways of disease Genomic disorders and inherited multi-system disorders [NCMLS 6] ,030217 neurology & neurosurgery ,HeLa Cells - Abstract
Spinal muscular atrophy (SMA) is a heterogeneous group of neuromuscular disorders caused by degeneration of lower motor neurons. Although functional loss of SMN1 is associated with autosomal-recessive childhood SMA, the genetic cause for most families affected by dominantly inherited SMA is unknown. Here, we identified pathogenic variants in bicaudal D homolog 2 (Drosophila) (BICD2) in three families afflicted with autosomal-dominant SMA. Affected individuals displayed congenital slowly progressive muscle weakness mainly of the lower limbs and congenital contractures. In a large Dutch family, linkage analysis identified a 9q22.3 locus in which exome sequencing uncovered c.320C>T (p.Ser107Leu) in BICD2. Sequencing of 23 additional families affected by dominant SMA led to the identification of pathogenic variants in one family from Canada (c.2108C>T [p.Thr703Met]) and one from the Netherlands (c.563A>C [p.Asn188Thr]). BICD2 is a golgin and motor-adaptor protein involved in Golgi dynamics and vesicular and mRNA transport. Transient transfection of He La cells with all three mutant BICD2 cDNAs caused massive Golgi fragmentation. This observation was even more prominent in primary fibroblasts from an individual harboring c.2108C>T (p.Thr703Met) (affecting the C-terminal coiled-coil domain) and slightly less evident in individuals with c.563A>C (p.Asn188Thr) (affecting the N-terminal coiled-coil domain). Furthermore, BICD2 levels were reduced in affected individuals and trapped within the fragmented Golgi. Previous studies have shown that Drosophila mutant BicD causes reduced larvae locomotion by impaired clathrin-mediated synaptic endocytosis in neuromuscular junctions. These data emphasize the relevance of BICD2 in synaptic-vesicle recycling and support the conclusion that BICD2 mutations cause congenital slowly progressive dominant SMA.
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30. Sensory (VEP, BAEP, SEP) and motor-evoked potentials, liquoral and magnetic resonance findings in multiple sclerosis
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Giuseppe Caruso, Maria D. Caramia, Giorgio Bernardi, F. Zarola, L. Pelosi, Paolo M. Rossini, R. Floris, and Anna Perretti
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Male ,Pathology ,diagnosis ,Functional Laterality ,Middle Age ,immunology ,Cerebrospinal fluid ,adolescent ,adult ,auditory stimulation ,central nervous system ,cerebrospinal fluid ,clinical article ,computer analysis ,evoked brain stem response ,evoked muscle response ,evoked somatosensory response ,evoked visual response ,female ,human ,isoelectric focusing ,male ,methodology ,multiple sclerosis ,nuclear magnetic resonance imaging ,priority journal ,Adolescent ,Adult ,Brain ,Evoked Potentials ,Female ,Human ,Immunoglobulins, gamma-Chain ,Immunoglobulins, Heavy-Chain ,Laterality ,Magnetic Resonance Imaging ,Multiple Sclerosis ,medicine.diagnostic_test ,Heavy-Chain ,Middle Aged ,Neurology ,Psychology ,Immunoglobulin Heavy Chains ,Mri findings ,medicine.medical_specialty ,Immunoglobulin gamma-Chains ,Immunoglobulins ,Sensory system ,Normal MRI ,Settore MED/36 - Diagnostica per Immagini e Radioterapia ,medicine ,Humans ,business.industry ,Multiple sclerosis ,Magnetic resonance imaging ,gamma-Chain ,medicine.disease ,Median nerve ,Somatosensory evoked potential ,Neurology (clinical) ,Nuclear medicine ,business - Abstract
In order to define the most suitable instrumental protocol for the diagnosis of multiple sclerosis (MS), 41 patients with definite (D = 14), probable (P = 14) and suspected (S = 13) MS were examined with CSF immunology, brain MRI and multimodal evoked potentials. The central motor tracts were also tested. The following alteration rates were found: MRI = 78%, CSF = 63.6%, VEP = 70.0%, median nerve SEP = 50%, peroneal nerve SEP = 68.0%, BAEPs = 35.7%, motor-evoked potentials (MEPs) = 74.0%. Altogether, EPs were abnormal in 90% of cases. Normal MRI with altered EPs were found in 22% of cases, whilst a normal EP battery with defective CSF or MRI findings were found in 7%. Twenty-six out of 27 patients with P or S forms were reclassified into a D one when considering EPs and MRI features.
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- 1989
31. De novo variants in MAPK8IP3 cause intellectual disability with variable brain anomalies
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Alexander P.A. Stegmann, Tzipora C. Falik-Zaccai, Constance Smith-Hicks, Fernando Kok, Kenneth G. Miller, Constance T. R. M. Stumpel, Konrad Platzer, Maria Teresa Bonati, Laurie A. Demmer, Alexander Pepler, Luiza Ramos, Kaitlin M. Angione, Megan T. Cho, Candace Gamble, Petra Stöbe, Hailey Pinz, Campbell Brasington, Hanna Mandel, Carolyn Wilson, Deepali N. Shinde, Maria Iascone, Rami Abou Jamra, Thorsten Marquardt, Johannes R. Lemke, Heinrich Sticht, Sonal Mahida, Yorck Hellenbroich, Nataliya Di Donato, William Allen, Kirsty McWalter, Stacey L. Edwards, Bianca Panis, MUMC+: DA KG Lab Centraal Lab (9), Klinische Genetica, MUMC+: DA KG Polikliniek (9), and RS: GROW - R4 - Reproductive and Perinatal Medicine
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0301 basic medicine ,Male ,Models, Molecular ,Adolescent ,PROTEINS ,EXOME ,Nerve Tissue Proteins ,Biology ,Corpus callosum ,Article ,03 medical and health sciences ,Young Adult ,POLYMICROGYRIA ,0302 clinical medicine ,Neurodevelopmental disorder ,Intellectual Disability ,Intellectual disability ,Exome Sequencing ,Genetics ,Polymicrogyria ,medicine ,Missense mutation ,Animals ,Humans ,Computer Simulation ,KINESIN ,Caenorhabditis elegans ,Child ,Genetics (clinical) ,Exome sequencing ,Adaptor Proteins, Signal Transducing ,AXONAL ANTEROGRADE TRANSPORT ,MUTATIONS ,TRKB ,Brain ,Perisylvian polymicrogyria ,medicine.disease ,Phenotype ,HEAVY-CHAIN ,UNC-16 JIP3 ,030104 developmental biology ,Child, Preschool ,Mutation ,Female ,CRISPR-Cas Systems ,Lysosomes ,030217 neurology & neurosurgery ,Locomotion - Abstract
Using exome sequencing, we have identified de novo variants in MAPK8IP3 in 13 unrelated individuals presenting with an overlapping phenotype of mild to severe intellectual disability. The de novo variants comprise six missense variants, three of which are recurrent, and three truncating variants. Brain anomalies such as perisylvian polymicrogyria, cerebral or cerebellar atrophy, and hypoplasia of the corpus callosum were consistent among individuals harboring recurrent de novo missense variants. MAPK8IP3 has been shown to be involved in the retrograde axonal-transport machinery, but many of its specific functions are yet to be elucidated. Using the CRISPR-Cas9 system to target six conserved amino acid positions in Caenorhabditis elegans, we found that two of the six investigated human alterations led to a significantly elevated density of axonal lysosomes, and five variants were associated with adverse locomotion. Reverse-engineering normalized the observed adverse effects back to wild-type levels. Combining genetic, phenotypic, and functional findings, as well as the significant enrichment of de novo variants in MAPK8IP3 within our total cohort of 27,232 individuals who underwent exome sequencing, we implicate de novo variants in MAPK8IP3 as a cause of a neurodevelopmental disorder with intellectual disability and variable brain anomalies.
32. Consensus strategy to quantitate malignant cells in myeloma patients is validated in a multicenter study
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Willems, P., Verhagen, O., Segeren, C., Veenhuizen, P., Guikema, J., Erik Wiemer, Groothuis, L., Buitenweg-De Jong, T., Kok, H., Bloem, A., Bos, N., Vellenga, E., Mensink, E., Sonneveld, P., Schoot, H. L. E., Raymakers, R., Cell Biochemistry, Guided Treatment in Optimal Selected Cancer Patients (GUTS), Stem Cell Aging Leukemia and Lymphoma (SALL), and Translational Immunology Groningen (TRIGR)
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REACTION PRODUCT ,AQUATICUS DNA-POLYMERASE ,LIMITING DILUTION ,Molecular pathogenesis of multiple myeloma ,Moleculaire pathogenese van het multipele myeloom loom (MM) ,MULTIPLE-MYELOMA ,FLUOROGENIC PROBES ,BONE-MARROW TRANSPLANTATION ,POLYMERASE CHAIN-REACTION ,PERIPHERAL-BLOOD ,3'+EXONUCLEASE+ACTIVITY%22">5'->3' EXONUCLEASE ACTIVITY ,HEAVY-CHAIN - Abstract
Recently the Belgium-Dutch Hematology-Oncology group initiated a multicenter study to evaluate whether myeloma patients treated with intensive chemotherapy benefit from additional peripheral stem cell transplantation. To determine treatment response accurately, we decided to quantitate malignant cells. To test a consensus quantitation strategy, 5 centers independently determined the immunoglobulin heavy chain sequences of patient tumor cells and developed allele-specific oligonucleotides (ASO) and ASO-polymerase chain reaction (PCR). We compared the reproducibility of real-time quantitation with quantitation using limiting dilutions. We distributed DNA samples with a 4-log range of tumor cell concentrations and found average quantitation values deviating 74% and 42% from the input values with real-time PCR (1 center) and limiting dilutions (4 centers), respectively. Within single centers we found an average variation coefficient of 0.74, with limiting dilutions not significantly different from the average 0.82 center-to-center variation coefficient. Within a single center, real-time quantitation proved more reproducible (average variation coefficient, 0.36). Quantification was confirmed in 3 patients during treatment in the protocol. This report shows that real-time PCR or limiting dilution assays can be used for quantitation in a single multicenter trial. We present a consensus strategy that allows an accurate comparison of quantitation data generated in independent centers. (Blood. 2000;96:63-70) (C) 2000 by The American Society of Hematology.
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