1. Transposable element dysregulation in systemic lupus erythematosus and regulation by histone conformation and Hsp90.
- Author
-
Kelly, Maurer, Lihua, Shi, Zhe, Zhang, Li, Song, Yoselin, Paucar, Michelle, Petri, and Sullivan Kathleen, E.
- Subjects
- *
SYSTEMIC lupus erythematosus , *HISTONES , *RNA , *HEAT shock proteins regulation , *INTERFERONS - Abstract
Abstract Systemic lupus erythematosus (SLE) represents an autoimmune disease in which activation of the type I interferon pathway leads to dysregulation of tolerance and the generation of autoantibodies directed against nuclear constituents. The mechanisms driving the activation of the interferon pathway in SLE have been the subject of intense investigation but are still incompletely understood. Transposable elements represent an enormous source of RNA that could potentially stimulate the cell intrinsic RNA-recognition pathway, leading to upregulation of interferons. We used RNA-seq to define transposable element families and subfamilies in three cell types in SLE and found diverse effects on transposable element expression in the three cell types and even within a given family of transposable elements. When potential mechanisms were examined, we found that Hsp90 inhibition could drive increased expression of multiple type of transposable elements. Both direct inhibition and the delivery of a heat shock itself, which redirects heat shock regulators (including Hsp90) off of basal expression promoters and onto heat shock-responsive promoters, led to increased transposable element expression. This effect was amplified by the concurrent delivery of a histone deacetylase inhibitor. We conclude that transposable elements are dysregulated in SLE and there are tissue-specific effects and locus-specific effects. The magnitude of RNAs attributable to transposable elements makes their dysregulation of critical interest in SLE where transposable element RNA complexed with proteins has been shown to drive interferon expression. Highlights • Transposable element subfamilies have dysregulated expression in SLE. • Transposable elements have distinctive chromatin. • Restriction of transposable element expression, particularly Alu elements, was provided by p150 Adar and Oas1. • Expression of transposable elements could be induced through inhibition of Hsp90 or by heat shock. • Histone deacetylase inhibition led to increased expression of transposable elements in the setting of heat shock. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF