103 results on '"H. Kabata"'
Search Results
2. Radiological and Functional Lung Sequelae of COVID-19: Systematic Review and Meta-Analysis
- Author
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M. So, H. Kabata, K. Fukunaga, H. Takagi, and T. Kuno
- Published
- 2021
- Full Text
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3. Distinct TSLP-Immune Cell Cascades Provoke Acute Versus Chronic Type 2 Airway Inflammation
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D. Artis and H. Kabata
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Immune system ,medicine.anatomical_structure ,business.industry ,Cell ,Immunology ,medicine ,Airway inflammation ,business - Published
- 2020
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4. Symposia lectures
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Sung-Hou Kim, William A. Eaton, José L. Carrascosa, M. Tuna, Michal Neeman, M. G. Ullmann, A. Di Nola, Dominique Pantaloni, K. Shinzawa-Itoh, H. Kabata, J. H. Lees, G. Venturoli, P. Manikandan, Huub C. P. Driessen, Philippe J. Sansonetti, Kurt Drickamer, C. Peters Libeu, Daniela Pietrobon, Thomas Loisel, E. Pebav-Peyroula, A. Ostermann, J. C. Williams, Louise N. Johnson, David Holowka, Dinakar M. Salunke, M. Montai, G. Spooner, Masao Washizu, R. J. Cogdell, T. Tsukihara, F. Parak, P. J. Munson, Jean-Michel Claverie, I. Qromov, Victor Muñoz, D. Goldfarb, Bruce Cornell, John R. Helliwell, Barry Robson, S. M. Prince, P. Nollert, Anne Imberty, Takashi Kinebuchi, Anna Chiesa, Paulo Magalhaes, Ian J. Tickle, Abani K. Bhuyan, Nobuo Niimura, Ratna S. Phadke, T. Tomizaki, G. U. Nienhaus, V. I. Ivanov, Gouri S. Jas, J. Raul Grigera, Coumaran Egile, N. B. Ulyanov, Lisa J. Lapidus, Kazuhiko Kinosita, Tullio Pozzan, A. D. Beniaminov, S. A. Bondarenko, V. Di Francesco, H. J. C. Berendsen, Osamu Kurosawa, Ian C.P. Smith, Eric R. Henry, Patrick R. D'Silva, E. W. Knapp, Charles R. Cantor, Barbara Baird, Heinz Rüterians, A. Surolia, Ian A. Wilson, M. J. Pandya, Derek N. Woolfson, Dale B. Wigley, Wilma K. Olson, E. Yamashita, Clare Sansom, E. M. Zdobnov, E. Westhof, E. E. Minyat, R. Carmieli, Marisa Brini, J. P. Rosenbusch, Jeremy K. Cockcroft, B. L. de Groot, Sunney I. Chan, Anil K. Lala, M. D. Finucane, Marie-France Carlier, A. Royant, H. Belrhali, James Hofrichter, Manju Bansal, Nobuo Shimamoto, Chih-chen Wang, Rosario Rizzuto, Paolo Pinton, Fariza Ressacl, K. McAuley, B. Bhattacharyya, E. M. Landau, M. J. Fei, C. Shutter, Keiichi Namba, I. Pecht, Wolfgang Junge, M. Paci, J. Garnier, Patrick Chaussepied, R. Nakashima, P. T. Callaghan, Ramen K. Poddar, X. Lin, P. Mathis, Jean Garnier, Valerie Laurent, N. W. Isaacs, Ronald S. Rock, F. Drepper, David S. Moss, Javant Udgaonkar, I. G. Wool, N. Inoue, A. Amadei, T. Shane, Shu-Rong Wang, M. A. Ceruso, K. V. R. Chary, C. C. Correll, K. McLuskey, J. P. Allen, S. Yoshikawa, R. van Grondelle, and Stephen J. Hagen
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Chemistry ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Published
- 1999
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5. Single-molecule dynamics of protein interplaying with non-specific DNA
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H. Kabata and Nobuo Shimamoto
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chemistry.chemical_compound ,Non specific ,Chemistry ,Dynamics (mechanics) ,Biophysics ,Molecule ,DNA - Published
- 1995
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6. Dielectrophoretic chromatography with cross-flow injection
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H. Kabata, Osamu Kurosawa, H. Sano, and Masao Washizu
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Electrophoresis ,Microelectrode ,Chromatography ,Materials science ,Capillary electrophoresis ,law ,Hydrostatic pressure ,Electrode array ,Analytical chemistry ,Particle ,Injector ,Dielectric ,law.invention - Abstract
This paper reports the separation of particles using Dielectrophoretic (DEP) chromatography device. The device consists of a cross-flow injector, similar to that used in a capillary electrophoresis chip, and an array of interdigitated microelectrodes for separation, to which radio-frequency voltage (/spl sim/5V, 1MHz) is applied. All liquid actuation is done by hydrostatic pressure. The sample is fed pulse-wise to the carrier flow using the cross-flow injector. The particles in the sample undergo the non-uniform field created by the electrode array, and more polarizable the particle is, the higher the chance of the trapping by DEP force becomes, and as a result, more delayed from the carrier flow. Thus, a separation depending on the size and the dielectric properties of the particle become possible. Using the device, the separation of 1) 0.1 /spl mu/m and 1.0 /spl mu/m latex particles, 2) 6.6kbp and 48.5kbp DNA, are experimentally demonstrated.
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- 2003
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7. Molecular surgery of DNA based on electrostatic micromanipulation
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Osamu Kurosawa, H. Kabata, Takatoki Yamamoto, Nobuo Shimamoto, and Masao Washizu
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medicine.medical_specialty ,Chemistry ,Substrate (chemistry) ,Dielectrophoresis ,Industrial and Manufacturing Engineering ,Surgery ,Restriction enzyme ,chemistry.chemical_compound ,Restriction site ,Optical tweezers ,Control and Systems Engineering ,medicine ,Electrical and Electronic Engineering ,Gene ,DNA ,Single molecule real time sequencing - Abstract
A novel method for the space-resolved dissection (molecular surgery) of deoxyribonucleic acid (DNA) using electrostatic molecular manipulation is proposed and demonstrated. In conventional biochemistry, DNA-cutting enzymes and DNA are mixed in water, so the cutting reactions occur only by stochastic chances. In contrast, the present method is based upon a physical manipulation and enables the reproducible cutting of DNA at any desired position along the DNA molecule. In order to realize this space-resolved cutting, the target DNA is stretched straight by electrostatic orientation and anchored on a solid surface by dielectrophoresis, using the high-intensity (1 MV/m) high-frequency (1 MHz) field created in microfabricated electrodes. It is found that, for the enzymatic cutting to occur, the DNA strand must be immobilized in such a way as to allow the enzyme to bind and interact with DNA. For this purpose, an electrode system is developed, in which DNA is anchored to the substrate only at the ends of the molecule, leaving the middle free. The enzyme, on the other hand, is immobilized on a latex particle having 1-/spl mu/m diameter, and optical tweezers are used to hold it and press it against the stretched and immobilized DNA. The enzymes used are: (1) DNaseI (cuts DNA regardless of the base sequence) and (2) HindIII (a restriction enzyme; cuts DNA at a specific sequence). It is demonstrated that, when a DNaseI-labeled bead is brought into contact with the immobilized DNA, DNA is cut instantaneously. On the other hand, when the restriction enzyme is used, the bead must be moved along the strand for a certain distance until it is finally cut. The authors' interpretation for this enzyme dependence is that the restriction enzyme has to get into the grooves of DNA to find the restriction sites, so the condition for the molecular contour fitting of the DNA and the enzyme are stricter compared with the case of the simple backbone-cutting enzyme DNaseI. The technique presented in this paper is expected to realize space-resolved molecular surgical operations, not just limited to dissections, but also for chemical modifications, or even insertion of genes.
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- 2002
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8. [Visualization of DNA-protein interaction and sliding motion of protein molecules along DNA]
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H, Kabata and N, Shimamoto
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DNA-Binding Proteins ,Motion ,Microscopy, Fluorescence ,DNA ,Fluorescent Dyes ,Protein Binding - Published
- 1997
9. Purification and characterization of a cam repressor (CamR) for the cytochrome P-450cam hydroxylase operon on the Pseudomonas putida CAM plasmid
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Tadao Horiuchi, H Kabata, N Shimamoto, Yasuhiro Sagara, and H Aramaki
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Operator Regions, Genetic ,Cytochrome ,Camphor 5-Monooxygenase ,Operon ,Molecular Sequence Data ,Repressor ,medicine.disease_cause ,Microbiology ,trp operon ,Mixed Function Oxygenases ,Plasmid ,Cytochrome P-450 Enzyme System ,medicine ,RNA, Messenger ,Molecular Biology ,Escherichia coli ,Gel electrophoresis ,Binding Sites ,biology ,Base Sequence ,Pseudomonas putida ,Gene Expression Regulation, Bacterial ,biology.organism_classification ,Molecular biology ,Camphor ,DNA-Binding Proteins ,Repressor Proteins ,Biochemistry ,Oligodeoxyribonucleotides ,biology.protein ,Research Article - Abstract
The cytochrome P-450cam hydroxylase operon of Pseudomonas putida PpG1 (ATCC 17543) encodes proteins responsible for early steps of the degradation of D-camphor. Transcription of this operon is negatively controlled by the cam repressor (CamR), and the expression of camR is autoregulated. CamR was purified from Escherichia coli harboring an overproducing plasmid. The repressor forms a homodimer with a molecular mass of 40 kDa, as judged by sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis and gel filtration. CamR protected a specific DNA region from attack by DNase I. This region contains a palindromic operator of the cytochrome P-450cam hydroxylase operon and of the camR gene. Protection was inhibited by the addition of 60 microM D-camphor and also by certain camphor analogs and degradation products, including D-3-bromocamphor, adamantane, 2-adamantanone, 5-exo-hydroxycamphor, and 2,5-diketocamphane. These analogs and degradation products induced cytochrome P-450cam hydroxylase operon expression in vivo.
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- 1995
10. Effect of high pressure on EcoRI reactions
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H. Kabata, Shigeru Kunugi, Akihiko Nomura, and Nobuo Shimamoto
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DNA, Bacterial ,Kinetics ,EcoRI ,Analytical chemistry ,Deoxyribonuclease EcoRI ,Substrate Specificity ,Structural Biology ,Pressure ,Enzyme kinetics ,Molecular Biology ,chemistry.chemical_classification ,Star activity ,biology ,Chemistry ,Osmolar Concentration ,DNA ,Molecular biology ,Bacteriophage lambda ,Restriction enzyme ,Enzyme ,DNA, Viral ,biology.protein ,Solvents ,BamHI ,Plasmids - Abstract
The effect of pressure on reactions of restriction endonucleases was investigated. No obvious irreversible (after) effect was observed for EcoRI, while a considerable irreversible inactivation was found for BamHI. Thus the EcoRI reactions against lambda DNA, pBR322 and pBluescript were studied under high pressure and little effect was observed on the overall reactions. The DNA concentration dependence of the kinetic data apparently fits the Michaelis-Menten type equation and the evaluated rate parameters were: Vmax = 6.2 +/- 0.24 and 7.0 +/- 0.22 (x 10(-2) nM/min) at 0.1 and 200 MPa, respectively; Km = 19 +/- 1.8 and 28 +/- 1.7 nM at 0.1 and 200 MPa, respectively. The apparent activation volume corresponding to kcat/Km was ca +1 mL/mol. A characteristic effect of pressure on the sequence specificity of these enzymes was seen in their star activity. Relaxed specificity was tightened by increasing pressure (200 MPa) with respect to that induced by low salt concentration or by the presence of organic solvent.
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- 1994
11. A single-molecule microscopic technique for studying the mobility-function relationships of proteins involved in gene expression, regulation, and integrity
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H. Kabata, Yoshiyuki Mizushina, Kengo Sakaguchi, Takashi Miki, Masao Washizu, and Shigeichi Matsumoto
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Regulation of gene expression ,Chemistry ,Molecule ,Function (biology) ,Cell biology - Published
- 2002
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12. Visualization of single molecules of RNA polymerase sliding along DNA
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Osamu Kurosawa, Ichiro Arai, Nobuo Shimamoto, Masao Washizu, H. Kabata, Stefanie A. Margarson, and Robert E. Glass
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Multidisciplinary ,DNA clamp ,biology ,Transcription, Genetic ,DNA polymerase ,Oligonucleotide ,DNA polymerase II ,Movement ,DNA-Directed RNA Polymerases ,Molecular biology ,Bacteriophage lambda ,chemistry.chemical_compound ,chemistry ,RNA polymerase ,Bacteriophage T7 ,DNA, Viral ,biology.protein ,Escherichia coli ,DNA polymerase I ,Promoter Regions, Genetic ,Polymerase ,Transcription bubble - Abstract
Transcription requires that RNA polymerase binds to promoters buried in nonspecific sites on DNA. The search for promoters may be facilitated if the polymerase slides along the molecule of DNA. Single molecules of Escherichia coli RNA polymerase were visualized, and their movements on immobilized bacteriophage lambda and T7 DNAs were examined. Deviating from drifts by bulk flow, about 40 percent of the enzyme molecules moved along the extended DNA. The results provide direct evidence for sliding as a mechanism for relocation of the enzyme on DNA.
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- 1993
13. 2P098 Diffusional motion along DNA molecules induced by RecA protein
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T. Kinebuchi, Y. Kimura, H. Kurumizaka, H. Kabata, and M. Washizu
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Crystallography ,chemistry.chemical_compound ,chemistry ,RecA Protein ,Biophysics ,Molecule ,DNA - Published
- 2004
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14. Imaging of homologous recombination process at work
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Y. Kimura, H. Kabata, T. Kinebuchi, H. Kurumizaka, and M. Washizu
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Work (thermodynamics) ,Materials science ,Chemical physics ,Scientific method ,FLP-FRT recombination ,Homologous recombination - Published
- 2003
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15. A Novel DNA Analysis Using Physical DNA Manipulation
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H. Kabata, Masao Washizu, K. Okabe, and O. Kurosawa
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chemistry.chemical_compound ,chemistry ,Computational biology ,DNA - Published
- 2000
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16. in vitro motility assay for aetecting molecular movements of EcoRI and T7 RNA polymerase on DNA
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H. Kabata, Masao Washizu, S. Matsumoto, and O. Kurosawa
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chemistry.chemical_compound ,biology ,chemistry ,In vitro motility ,biology.protein ,medicine ,EcoRI ,T7 RNA polymerase ,Molecular biology ,Polymerase ,DNA ,medicine.drug - Published
- 2000
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17. Two-Step binding of D-camphor to cam repressor (CamR) in induction of camDCAB expression
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H. Aramaki, N. Shimamaoto, and H. Kabata
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Camphor ,chemistry.chemical_compound ,Chemistry ,Two step ,Repressor ,Cell biology - Published
- 1999
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18. The Recovery and Amplification of DNA fragments Cut by Phsical Means
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H. Kabata, N. Ishida, Masao Washizu, Nobuo Shimamoto, K. Okabe, and O. Kurosawa
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chemistry.chemical_compound ,Chemistry ,Molecular biology ,DNA - Published
- 1999
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19. Microscopic observation of Eco RI and T7 RNA polymerase interacting with stretched DNA
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H. Kabata, S. Matsumoto, Masao Washizu, W. Okada, and O. Kurosawa
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chemistry.chemical_compound ,chemistry ,EcoRI ,biology.protein ,medicine ,T7 RNA polymerase ,Biology ,Molecular biology ,DNA ,Microscopic observation ,medicine.drug - Published
- 1999
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20. [Supplementation of essential trace elements during total parenteral nutrition--effects on trace element-deficient rats]
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K, Yokoi, M, Kimura, A, Matsuda, H, Kabata, Y, Itokawa, M, Kataoka, and M, Sato
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Male ,Animals ,Parenteral Nutrition, Total ,Rats, Inbred Strains ,Rats ,Trace Elements - Abstract
Thirty-one male SD rats, six weeks old, were fed a trace element-deficient diet for two weeks and then divided into three groups and maintained for 1 week as follows: group A with total parenteral nutrition (TPN) without supplementation of trace elements, group B with TPN supplemented with the following 5 trace elements ... iron, zinc, copper, manganese and iodine, and group C with a diet free of the above five trace elements. Another group of eight rats was fed a diet supplemented with the above five trace elements for three weeks as a control (group D). Feeding or TPN without supplementation of trace elements evoked microcytic hypochromic anemia and significant decreases in iron concentrations in plasma and tissues (groups A and C). Supplementation of trace elements in the TPN solution showed a tendency to cure anemia and a significant increase in the iron concentration in tibia (group B). Decreases in the zinc or copper concentrations in plasma and tissues during TPN without trace elements were prevented by supplementation of trace elements in the TPN solution (group B). The plasma zinc and copper concentrations correlated well with their levels in liver, kidney and tibia. Manganese deficiency was not recognized in this investigation (groups A and C), though supplementation of trace elements in the TPN solution increased tissue manganese concentration (group B). Feeding or TPN without supplementation of trace elements induced decreases in plasma triiodothyronine and thyroxine (groups A and C). Supplementation of trace elements in the TPN solution showed a tendency to increase plasma thyroxine (group B).(ABSTRACT TRUNCATED AT 250 WORDS)
- Published
- 1989
21. Primary hypomagnesemia with secondary hypocalcemia. Report of a case and review of the world literature
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T, Yamamoto, H, Kabata, R, Yagi, M, Takashima, and Y, Itokawa
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Male ,Tetany ,Hypocalcemia ,Infant ,Prognosis ,Diagnosis, Differential ,Intestinal Absorption ,Parathyroid Hormone ,Seizures ,Cyclic AMP ,Humans ,Calcium ,Female ,Magnesium ,Magnesium Deficiency - Abstract
Primary hypomagnesemia with secondary hypocalcemia (PHSH) is a rare type of hypocalcemic disorder which occurs in early infancy and is clinically characterized by recurrent tetany and/or convulsion. In this paper, a male infant with PHSH who had frequent seizures at the age of 9 days is described. Besides PHSH, several illnesses in infancy are manifested by hypomagnesemia and hypocalcemia, i.e. transient neonatal hypomagnesemic hypocalcemia, congenital renal or hepatic insufficiencies, magnesium-losing nephropathy, combined impairments of intestinal absorption and renal reabsorption of magnesium. PHSH is to be differentiated from these illnesses by the demonstration of a combination of the following findings; hypocalcemia refractory to calcium but responsive to magnesium, continuous requirement for magnesium supplementation to maintain normocalcemia, lack of hypermagnesiuria and/or impaired intestinal absorption of magnesium. Twenty cases from the literature were found to exhibit these characteristics. The clinical, biochemical, and endocrine features of PHSH are summarized on the basis of a review of the data of these and the present case. No associated illness was known in the afflicted infants or mothers. Both male and female infants were afflicted at a male to female ratio of 15:6. Some siblings were afflicted but none of the parents or relatives. The onset of tetany and/or convulsion was between the 9th day and 4th month, which is later than that of other neonatal hypocalcemic illnesses. Hypocalcemia was more pronounced than other infantile hypocalcemic illnesses. The role of the parathyroid hormone in the pathogenesis of hypocalcemia has been studied in several studies but no unifying concepts have yet been established.
- Published
- 1985
22. [Surgery of congenital aortic stenosis]
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K, Saji, Y, Shibauda, H, Kabata, T, Hongo, and K, Haneda
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Adult ,Male ,Adolescent ,Child, Preschool ,Methods ,Humans ,Female ,Aortic Valve Stenosis ,Child - Published
- 1975
23. Multiomics analysis identified IL-4-induced IL1RL1 high eosinophils characterized by prominent cysteinyl leukotriene metabolism.
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Sunata K, Miyata J, Kawashima Y, Konno R, Ishikawa M, Hasegawa Y, Onozato R, Otsu Y, Matsuyama E, Sasaki H, Okuzumi S, Mochimaru T, Masaki K, Kabata H, Kawana A, Arita M, and Fukunaga K
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- Humans, Leukotrienes metabolism, Proteomics, Transcriptome, Adult, Male, Multiomics, Eosinophils immunology, Eosinophils metabolism, Interleukin-4 metabolism, Interleukin-4 pharmacology, Interleukin-1 Receptor-Like 1 Protein metabolism, Interleukin-1 Receptor-Like 1 Protein genetics
- Abstract
Background: Clinical studies have demonstrated that IL-4, a type 2 cytokine, plays an important role in the pathogenesis of chronic rhinosinusitis and eosinophilic asthma. However, the direct effect of IL-4 on eosinophils remains unclear., Objective: We aimed to elucidate the inflammatory effects of IL-4 on the functions of human eosinophils., Methods: A multiomics analysis comprising transcriptomics, proteomics, lipidomics, quantitative RT-PCR, and flow cytometry was performed by using blood eosinophils from healthy subjects stimulated with IL-4, IL-5, or a combination thereof., Results: Transcriptomic and proteomic analyses revealed that both IL-4 and IL-5 upregulate the expression of γ-gultamyl transferase 5, a fatty acid-metabolizing enzyme that converts leukotriene C
4 into leukotriene D4 . In addition, IL-4 specifically upregulates the expression of IL-1 receptor-like 1 (IL1RL1), a receptor for IL-33 and transglutaminase-2. Additional transcriptomic analysis of cells stimulated with IL-13 revealed altered gene expression profiles, characterized by the upregulation of γ-gultamyl transferase 5, transglutaminase-2, and IL1RL1. The IL-13-induced changes were not totally different from the IL-4-induced changes. Lipidomic analysis revealed that IL-5 and IL-4 additively increased the extracellular release of leukotriene D4 . In vitro experiments revealed that STAT6 and IL-4 receptor-α control the expression of these molecules in the presence of IL-4 and IL-13. Analysis of eosinophils derived from patients with allergic disorders indicated the involvement of IL-4 and IL-13 at the inflamed sites., Conclusions: IL-4 induces the proallergic phenotype of IL1RL1high eosinophils, with prominent cysteinyl leukotriene metabolism via STAT6. These cellular changes represent potential therapeutic targets for chronic rhinosinusitis and eosinophilic asthma., Competing Interests: Disclosure statement Supported by the Japanese Society for the Promotion of Science (JSPS) Grants-in-Aid for Scientific Research Program (KAKENHI) (grants 15H05897, 15H05898, and 20H00495 [to M.A.]), Japan Science and Technology Agency program Exploratory Research for Advanced Technology (JST-ERATO) (grant JPMJER2101 [to M.A.]), Research Grant on Allergic Disease and Immunology from the Japan Agency for Medical Research and Development (grant 22ek0410097 [to J.M.]), JSPS Grant-in-Aid for Young Scientists (grant 20K17239 [to J.M.]), RIKEN Special Postdoctoral Researchers Program (to J.M.), GSK Japan Research Grant 2018 (to J.M.), and Grant-in-Aid for Research of the ONO Medical Research Foundation (to J.M.). Disclosure of potential conflict of interest: J. Miyata, K. Masaki, H. Kabata, and K. Fukunaga report receiving research grant support from GSK and AstraZeneca. J. Miyata and K. Fukunaga report receiving payments for lectures from GSK, AstraZeneca, and Sanofi. K. Masaki reports receiving payments for lectures from GSK and AstraZeneca, and GSK. H. Kabata reports receiving payments for lectures from AstraZeneca and Sanofi. The rest of the authors declare that they have no relevant conflicts of interest., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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24. Distinct roles of types 1 and 2 interferons in human eosinophil regulation: A multi-omics analysis.
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Sasaki H, Miyata J, Kawashima Y, Konno R, Ishikawa M, Hasegawa Y, Onozato R, Otsu Y, Matsuyama E, Sunata K, Masaki K, Kabata H, Kimizuka Y, Ueki S, Asano K, Kawana A, Arita M, and Fukunaga K
- Published
- 2024
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25. Inflammatory profile of eosinophils in asthma-COPD overlap and eosinophilic COPD: a multi-omics study.
- Author
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Sunata K, Miyata J, Kawashima Y, Konno R, Ishikawa M, Hasegawa Y, Onozato R, Otsu Y, Matsuyama E, Sasaki H, Okuzumi S, Mochimaru T, Masaki K, Kabata H, Chubachi S, Arita M, and Fukunaga K
- Subjects
- Humans, Male, Middle Aged, Female, Proteomics methods, Aged, Asthma immunology, Asthma drug therapy, Transcriptome, Gene Expression Profiling, Asthma-Chronic Obstructive Pulmonary Disease Overlap Syndrome immunology, Asthma-Chronic Obstructive Pulmonary Disease Overlap Syndrome drug therapy, Lipidomics, Inflammation immunology, Pulmonary Eosinophilia immunology, Pulmonary Eosinophilia drug therapy, Multiomics, Eosinophils immunology, Eosinophils metabolism, Pulmonary Disease, Chronic Obstructive immunology, Pulmonary Disease, Chronic Obstructive drug therapy
- Abstract
Introduction: Elevated blood eosinophil levels in patients with chronic obstructive pulmonary disease (COPD) with or without asthma are linked to increased exacerbations and the effectiveness of inhaled corticosteroid treatment. This study aimed to delineate the inflammatory cellular properties of eosinophils in patients with asthma-COPD overlap (ACO) and eosinophilic COPD (eCOPD)., Methods: Eosinophils were isolated from the peripheral blood of healthy volunteers, patients with non-eCOPD, and those with ACO/eCOPD. Multi-omics analysis involving transcriptomics, proteomics, and lipidomics was performed, followed by bioinformatic data analyses. In vitro experiments using eosinophils from healthy volunteers were conducted to investigate the molecular mechanisms underlying cellular alterations in eosinophils., Results: Proteomics and transcriptomics analyses revealed cellular characteristics in overall COPD patients represented by viral infection (elevated expression of sterol regulatory element-binding protein-1) and inflammatory responses (elevated levels of IL1 receptor-like 1, Fc epsilon receptor Ig, and transmembrane protein 176B). Cholesterol metabolism enzymes were identified as ACO/eCOPD-related factors. Gene Ontology and pathway enrichment analyses demonstrated the key roles of antiviral responses, cholesterol metabolism, and inflammatory molecules-related signaling pathways in ACO/eCOPD. Lipidomics showed the impaired synthesis of cyclooxygenase-derived mediators including prostaglandin E2 (PGE2) in ACO/eCOPD. In vitro assessment confirmed that IL-33 or TNF-α stimulation combined with IL-5 and IFN-γ stimulation induced cellular signatures in eosinophils in ACO/eCOPD. Atorvastatin, dexamethasone, and PGE2 differentially modulated these inflammatory changes., Discussion: ACO/eCOPD is associated with viral infection and an inflammatory milieu. Therapeutic strategies using statins and inhaled corticosteroids are recommended to control these pathogenic changes., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Sunata, Miyata, Kawashima, Konno, Ishikawa, Hasegawa, Onozato, Otsu, Matsuyama, Sasaki, Okuzumi, Mochimaru, Masaki, Kabata, Chubachi, Arita and Fukunaga.)
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- 2024
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26. Aspergillus fumigatus extract modulates human eosinophils via NOD2 and oxidative stress.
- Author
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Sasaki H, Miyata J, Kawashima Y, Konno R, Ishikawa M, Hasegawa Y, Onozato R, Otsu Y, Matsuyama E, Sunata K, Masaki K, Kabata H, Kimizuka Y, Abe T, Ueki S, Asano K, Kawana A, and Fukunaga K
- Abstract
Background: Aspergillus fumigatus is a pathogenic fungus known to be associated with severe asthma and allergic bronchopulmonary mycosis. However, the precise mechanisms underlying airway inflammation remain unclear. In this study, we investigated the direct modulation of human eosinophils by A. fumigatus and identified the specific mechanism of airway inflammation., Methods: Eosinophils isolated from healthy subjects were stimulated with extracts of A. fumigatus. Multi-omics analysis, comprising transcriptomic and proteomic analyses, was performed. The expression of specific factors was evaluated using quantitative real-time polymerase chain reaction and flow cytometry. Mechanistic analyses were performed using NOD2 inhibitor and N-acetyl-l-cysteine (NAC)., Results: The A. fumigatus extract changed the expression of adhesion molecules (CD62L and CD11b) and CD69 on the surface of eosinophils, without affecting their viability, via nucleotide-binding oligomerization domain-containing protein 2 (NOD2) but not protease activity. Investigation using kinase inhibitors showed that A. fumigatus extract-induced modulation was partly mediated via p38 mitogen-activated protein kinases. Multi-omics analysis revealed that A. fumigatus-induced gene and protein expression profiles were characterized by the upregulation of oxidative stress-related molecules, including heat shock proteins (HSP90AA1, HSP90AB1, SRXN1, and HMOX1). NOD2 inhibitor and NAC differentially inhibited A. fumigatus-induced inflammatory changes. Additional multi-omics analysis identified that NOD2 signaling induced gene signatures different from those of interleukin (IL)-5 and elicited synergistic change with IL-5., Conclusions: A. fumigatus modulates human eosinophils via NOD2 and oxidative stress-mediated signaling. NOD2 signaling potentiated IL-5-induced activation, suggesting its pathogenic role in type 2 inflammation. NOD2 inhibitors and antioxidants can have therapeutic potential against A. fumigatus-related allergic disorders., (Copyright © 2024 Japanese Society of Allergology. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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27. Unveiling the Neuron-mediated Group 2 Innate Lymphoid Cell Activation in Human Asthma.
- Author
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Kabata H and Ueki S
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- Humans, Lymphocytes immunology, Male, Neurons immunology, Female, Lymphocyte Activation immunology, Adult, Middle Aged, Asthma immunology, Immunity, Innate immunology
- Published
- 2024
- Full Text
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28. Acidic oral environment's potential contribution to palladium-induced systemic contact dermatitis: Case report.
- Author
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Adachi T, Masaki K, Sujino K, Okata-Karigane U, Murakami T, Takahashi C, Nakayama S, Tomiyasu S, Asaoka M, Kabata H, Miyata J, Takahashi H, and Fukunaga K
- Abstract
Acidic oral environments may trigger systemic contact dermatitis via ionization of metals, including palladium. A patch test revealed a late delayed positive response to palladium, emphasizing the need for nuanced diagnostic approaches for allergy management., Competing Interests: Partially supported by the Scientific Research Fund of the 10.13039/501100003478Ministry of Health, Labour and Welfare, Japan (grant 21FE2001) and the Japanese Agency for Medical Research and Development (grants 23ek0410090 and 23ek0410106). Disclosure of potential conflict of interest: T. Adachi recieved honoraria for lectures from Torii Pharmaceutical Co. The rest of the authors declare that they have no relevant conflicts of interest., (© 2024 The Author(s).)
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- 2024
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29. Quantitative live-cell imaging of secretion activity reveals dynamic immune responses.
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Yamagishi M, Miyata K, Kamatani T, Kabata H, Baba R, Tanaka Y, Suzuki N, Matsusaka M, Motomura Y, Kiniwa T, Koga S, Goda K, Ohara O, Funatsu T, Fukunaga K, Moro K, Uemura S, and Shirasaki Y
- Abstract
Quantification of cytokine secretion has facilitated advances in the field of immunology, yet the dynamic and varied secretion profiles of individual cells, particularly those obtained from limited human samples, remain obscure. Herein, we introduce a technology for quantitative live-cell imaging of secretion activity (qLCI-S) that enables high-throughput and dual-color monitoring of secretion activity at the single-cell level over several days, followed by transcriptome analysis of individual cells based on their phenotype. The efficacy of qLCI-S was demonstrated by visualizing the characteristic temporal pattern of cytokine secretion of group 2 innate lymphoid cells, which constitute less than 0.01% of human peripheral blood mononuclear cells, and by revealing minor subpopulations with enhanced cytokine production. The underlying mechanism of this feature was linked to the gene expression of stimuli receptors. This technology paves the way for exploring gene expression signatures linked to the spatiotemporal dynamic nature of various secretory functions., Competing Interests: M.Y. is the founder and shareholder of Live Cell Diagnosis, Ltd., the company established to develop LCI-S. Y.S. is an immediate family member of M.Y. N.S. is currently employed by Live Cell Diagnosis. K.G. is a shareholder of CYBO and Cupido., (© 2024 The Authors.)
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- 2024
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30. Protocol for lentiviral vector-based gene transfection in human ILC2s.
- Author
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Irie M, Kabata H, and Fukunaga K
- Subjects
- Humans, Lymphocytes metabolism, Transfection, Cells, Cultured, Immunity, Innate genetics, Lentivirus genetics
- Abstract
Modifying gene expression in lymphocytes is essential for immunological research; however, gene transfection methods for group 2 innate lymphoid cells (ILC2s) are not well established. Here, we present a protocol utilizing lentiviral vectors to introduce genes into human ILC2s. We detail steps for lentiviral solution preparation, transfection, and selection of transfected cells. This protocol allows overexpression or suppression of specific genes and evaluation of the changes in ILC2 biology. For complete details on the use and execution of this protocol, please refer to Irie et al. (2023).
1 ., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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31. [THE INNATE IMMUNE NETWORK AND THERAPEUTIC APPROACHES IN ASTHMA].
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Baba R, Kabata H, and Fukunaga K
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- Humans, Cytokines, Immunity, Innate, Lymphocytes, Asthma therapy
- Published
- 2024
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32. [IS INHALED CORTICOSTEROID STEP-DOWN RECOMMENDED FOR ADULT ASTHMA PATIENTS HAVE BEEN WELL CONTROLLED OVER THE LONG TERM WITH MODERATE OR HIGH-DOSE INHALED CORTICOSTEROIDS?]
- Author
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Okada N, Kabata H, Tanaka Y, Homma T, and Mikura S
- Subjects
- Humans, Administration, Inhalation, Adult, Randomized Controlled Trials as Topic, Asthma drug therapy, Adrenal Cortex Hormones administration & dosage, Adrenal Cortex Hormones adverse effects
- Abstract
We conducted a systematic review to examine whether step-down of inhaled corticosteroid (ICS) is recommended for adult patients with asthma have been well controlled with moderate or high-dose inhaled corticosteroids for more than 12 weeks. Seven randomized controlled trials were included. ICS step-down did not increase asthma exacerbations requiring systemic steroid therapy and hospitalization. There was no effect on respiratory function, asthma control, or QOL. No significant differences were observed in serious adverse events or steroid-related adverse events, but the observation period was insufficient to assess long-term effects. Based on these results, we weakly recommend ICS step-down in adult patients with asthma have been well controlled with moderate or high-dose inhaled corticosteroids, but long-term asthma control and the incidence of steroid-related adverse events should be further investigated in the future.
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- 2024
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33. Comprehensive analysis of long COVID in a Japanese nationwide prospective cohort study.
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Terai H, Ishii M, Takemura R, Namkoong H, Shimamoto K, Masaki K, Tanosaki T, Chubachi S, Matsuyama E, Hayashi R, Shimada T, Shigematsu L, Ito F, Kaji M, Takaoka H, Kurihara M, Nakagawara K, Tomiyasu S, Sasahara K, Saito A, Otake S, Azekawa S, Okada M, Fukushima T, Morita A, Tanaka H, Sunata K, Asaoka M, Nishie M, Shinozaki T, Ebisudani T, Akiyama Y, Mitsuishi A, Nakayama S, Ogawa T, Sakurai K, Irie M, Yagi K, Ohgino K, Miyata J, Kabata H, Ikemura S, Kamata H, Yasuda H, Kawada I, Kimura R, Kondo M, Iwasaki T, Ishida N, Hiruma G, Miyazaki N, Ishibashi Y, Harada S, Fujita T, Ito D, Bun S, Tabuchi H, Kanzaki S, Shimizu E, Fukuda K, Yamagami J, Kobayashi K, Hirano T, Inoue T, Haraguchi M, Kagyo J, Shiomi T, Lee H, Sugihara K, Omori N, Sayama K, Otsuka K, Miyao N, Odani T, Watase M, Mochimaru T, Satomi R, Oyamada Y, Masuzawa K, Asakura T, Nakayama S, Suzuki Y, Baba R, Okamori S, Arai D, Nakachi I, Kuwahara N, Fujiwara A, Oakada T, Ishiguro T, Isosno T, Makino Y, Mashimo S, Kaido T, Minematsu N, Ueda S, Minami K, Hagiwara R, Manabe T, Fukui T, Funatsu Y, Koh H, Yoshiyama T, Kokuto H, Kusumoto T, Oashi A, Miyawaki M, Saito F, Tani T, Ishioka K, Takahashi S, Nakamura M, Harada N, Sasano H, Goto A, Kusaka Y, Ohba T, Nakano Y, Nishio K, Nakajima Y, Suzuki S, Yoshida S, Tateno H, Kodama N, Shunsuke M, Sakamoto S, Okamoto M, Nagasaki Y, Umeda A, Miyagawa K, Shimada H, Hagimura K, Nagashima K, Sato T, Sato Y, Hasegawa N, Takebayashi T, Nakahara J, Mimura M, Ogawa K, Shimmura S, Negishi K, Tsubota K, Amagai M, Goto R, Ibuka Y, Kitagawa Y, Kanai T, and Fukunaga K
- Subjects
- Adult, Female, Humans, Middle Aged, East Asian People, Prospective Studies, Quality of Life, SARS-CoV-2, COVID-19 epidemiology, Post-Acute COVID-19 Syndrome epidemiology
- Abstract
Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread rapidly since 2019, and the number of reports regarding long COVID has increased. Although the distribution of long COVID depends on patient characteristics, epidemiological data on Japanese patients are limited. Hence, this study aimed to investigate the distribution of long COVID in Japanese patients. This study is the first nationwide Japanese prospective cohort study on long COVID., Methods: This multicenter, prospective cohort study enrolled hospitalized COVID-19 patients aged ≥18 years at 26 Japanese medical institutions. In total, 1200 patients were enrolled. Clinical information and patient-reported outcomes were collected from medical records, paper questionnaires, and smartphone applications., Results: We collected data from 1066 cases with both medical records and patient-reported outcomes. The proportion of patients with at least one symptom decreased chronologically from 93.9% (947/1009) during hospitalization to 46.3% (433/935), 40.5% (350/865), and 33.0% (239/724) at 3, 6, and 12 months, respectively. Patients with at least one long COVID symptom showed lower quality of life and scored higher on assessments for depression, anxiety, and fear of COVID-19. Female sex, middle age (41-64 years), oxygen requirement, and critical condition during hospitalization were risk factors for long COVID., Conclusions: This study elucidated the symptom distribution and risks of long COVID in the Japanese population. This study provides reference data for future studies of long COVID in Japan., Competing Interests: Conflict of Interest Norihiro Harada reports personal fees from AstraZeneca K.K., GlaxoSmithKline, Kyorin, Novartis Japan, Sanofi and grants from AstraZeneca, Daikin, Kyorin, SRL Medisearch, outside the submitted work. Other authors have no conflicts of interest., (Copyright © 2023. Published by Elsevier B.V.)
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- 2023
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34. Time-dependent cell-state selection identifies transiently expressed genes regulating ILC2 activation.
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Tanaka Y, Yamagishi M, Motomura Y, Kamatani T, Oguchi Y, Suzuki N, Kiniwa T, Kabata H, Irie M, Tsunoda T, Miya F, Goda K, Ohara O, Funatsu T, Fukunaga K, Moro K, Uemura S, and Shirasaki Y
- Subjects
- Gene Expression Profiling, Transcriptome, Immunity, Innate genetics, Lymphocytes
- Abstract
The decision of whether cells are activated or not is controlled through dynamic intracellular molecular networks. However, the low population of cells during the transition state of activation renders the analysis of the transcriptome of this state technically challenging. To address this issue, we have developed the Time-Dependent Cell-State Selection (TDCSS) technique, which employs live-cell imaging of secretion activity to detect an index of the transition state, followed by the simultaneous recovery of indexed cells for subsequent transcriptome analysis. In this study, we used the TDCSS technique to investigate the transition state of group 2 innate lymphoid cells (ILC2s) activation, which is indexed by the onset of interleukin (IL)-13 secretion. The TDCSS approach allowed us to identify time-dependent genes, including transiently induced genes (TIGs). Our findings of IL4 and MIR155HG as TIGs have shown a regulatory function in ILC2s activation., (© 2023. Springer Nature Limited.)
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- 2023
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35. Annexin A1 is a cell-intrinsic metalloregulator of zinc in human ILC2s.
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Irie M, Kabata H, Sasahara K, Kurihara M, Shirasaki Y, Kamatani T, Baba R, Matsusaka M, Koga S, Masaki K, Miyata J, Araki Y, Kikawada T, Kabe Y, Suematsu M, Yamagishi M, Uemura S, Moro K, and Fukunaga K
- Subjects
- Humans, Lymphocytes metabolism, Zinc metabolism, Cytokines metabolism, Immunity, Innate, Annexin A1
- Abstract
Group 2 innate lymphoid cells (ILC2s) produce large amounts of type 2 cytokines including interleukin-5 (IL-5) and IL-13 in response to various stimuli, causing allergic and eosinophilic diseases. However, the cell-intrinsic regulatory mechanisms of human ILC2s remain unclear. Here, we analyze human ILC2s derived from different tissues and pathological conditions and identify ANXA1, encoding annexin A1, as a commonly highly expressed gene in non-activated ILC2s. The expression of ANXA1 decreases when ILC2s activate, but it increases autonomously as the activation subsides. Lentiviral vector-based gene transfer experiments show that ANXA1 suppresses the activation of human ILC2s. Mechanistically, ANXA1 regulates the expression of the metallothionein family genes, including MT2A, which modulate intracellular zinc homeostasis. Furthermore, increased intracellular zinc levels play an essential role in the activation of human ILC2s by promoting the mitogen-activated protein kinase (MAPK) and nuclear factor κB (NF-κB) pathways and GATA3 expression. Thus, the ANXA1/MT2A/zinc pathway is identified as a cell-intrinsic metalloregulatory mechanism for human ILC2s., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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36. Editorial: Heterogeneity of ILC2s.
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Kabata H and Fukunaga K
- Subjects
- Immunity, Innate, Lymphocytes
- Abstract
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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- 2023
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37. Risk factors for poor adherence to inhaled corticosteroid therapy in patients with moderate to severe asthma.
- Author
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Masaki K, Miyata J, Kamatani T, Tanosaki T, Mochimaru T, Kabata H, Suzuki Y, Asano K, Betsuyaku T, and Fukunaga K
- Subjects
- Adult, Humans, Child, Administration, Inhalation, Adrenal Cortex Hormones therapeutic use, Patient Compliance, Risk Factors, Asthma drug therapy
- Abstract
Background: Poor adherence to inhaled corticosteroid (ICS) therapy is a common reason for worsened asthma control., Objective: We investigated the characteristics of patients with moderate to severe asthma who showed poor adherence to therapy, to identify the barriers for optimal ICS therapy in a real-world observational cohort., Methods: We enrolled patients aged ≥20 years presenting with moderate to severe asthma who were enrolled at 18 hospitals in Japan. According to the Global Initiative for Asthma 2018 steps 3-5, the patients were considered as moderate to severe asthmatic. At inclusion, clinical information was obtained using a self-completed questionnaire. Poor adherence was defined as skipping the ICS therapy for more than once a week or inability to recognize the necessity of daily ICS therapy. Adherence Starts with Knowledge 20 (ASK-20) questionnaire was used to evaluate the cause of therapy incompliance., Results: Of the total 85 participants, 19 (22%) showed poor adherence. The median age at diagnosis in the poor adherence group was 10.0 years (interquartile range [IQR], 3.0-50.0), and that in the good adherence group was 41.0 years (18.5-51.5; P = 0.050). The scores for the ASK-20 items related to the "resistance to taking too much medicine" and "compliance with the number of dosing" demonstrated statistically significant differences between patients diagnosed with asthma during their childhood and others., Conclusions: Age at diagnosis is an independent risk factor to predict poor ICS adherence among adults with moderate to severe asthma.
- Published
- 2023
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38. [REGULATORY MECHANISMS OF INNATE AND ACQUIRED IMMUNE SYSTEMS BY TSLP].
- Author
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Kabata H
- Subjects
- Humans, Immune System, Immunity, Innate, Lymphocytes, Cytokines, Thymic Stromal Lymphopoietin
- Published
- 2023
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39. Current summary of clinical studies on anti-TSLP antibody, Tezepelumab, in asthma.
- Author
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Kurihara M, Kabata H, Irie M, and Fukunaga K
- Subjects
- Humans, Cytokines metabolism, Antibodies, Monoclonal, Humanized therapeutic use, Thymic Stromal Lymphopoietin, Asthma
- Abstract
Thymic stromal lymphopoietin (TSLP) is an epithelial cell-derived cytokine that plays a vital role in the induction of type 2 inflammation via both innate and acquired immune cascades. Tezepelumab, a human IgG2 monoclonal antibody that inhibits the binding of TSLP to the TSLP receptor, is the latest biologic for asthma. To evaluate the efficacy and mechanism of tezepelumab in asthma, the PATHWAY, NAVIGATOR, NOZOMI, UPSTREAM, CASCADE, SOURCE, and DESTINATION studies have been conducted. These results suggested that tezepelumab is a broad-target biologic, which is expected to be effective in patients with poorly controlled moderate to severe asthma regardless of the phenotype, although its efficacy in oral corticosteroids-dependent asthma, biological mechanism in non-type 2 phenotype, and long-term safety remain unknown. In this review, we summarize the results of clinical trials of tezepelumab in asthma and discuss the differences between tezepelumab and other biologics., (Copyright © 2022 Japanese Society of Allergology. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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40. How Can Dupilumab Cause Eosinophilic Pneumonia?
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Kurihara M, Masaki K, Matsuyama E, Fujioka M, Hayashi R, Tomiyasu S, Sasahara K, Sunata K, Asaoka M, Akiyama Y, Nishie M, Irie M, Tanosaki T, Kabata H, and Fukunaga K
- Subjects
- Humans, Male, Female, Middle Aged, Lung, Prednisolone therapeutic use, Dyspnea complications, Dyspnea drug therapy, Chronic Disease, Pulmonary Eosinophilia chemically induced, Pulmonary Eosinophilia diagnosis, Pulmonary Eosinophilia drug therapy
- Abstract
Reports of eosinophilic pneumonia (EP) as a side effect of dupilumab administration are limited in previous studies. Herein, we report two cases in which EP developed subsequent to the administration of dupilumab for eosinophilic chronic rhinosinusitis (ECRS). Case 1: A 55-year-old woman presented with ECRS, eosinophilic otitis media, and bronchial asthma, and was treated with dupilumab for ECRS. Five weeks later, fever and dyspnea developed, and infiltration shadows were observed in her lungs. The peripheral blood eosinophil count (PBEC) was 3848/μL (26%), bronchoalveolar lavage fluid showed eosinophilic infiltration, and EP was subsequently diagnosed. Her condition improved following prednisolone treatment. Case 2: A 59-year-old man presented with fatigue and dyspnea after receiving dupilumab for ECRS. He had infiltrative shadows throughout his left lung field, and his PBEC was 4850/μL (26.5%). Prednisolone was initiated, and his condition improved. EP developed in both patients during the period of elevated PBEC after dupilumab administration, and dupilumab was suspected to be the causative agent in their EP. Hence, EP should be considered as a differential diagnosis when fever and dyspnea appear following dupilumab administration.
- Published
- 2022
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41. Young woman with multiple lung nodules: a pulmonary oxymoron.
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Tanaka H, Kabata H, Emoto K, Hayashi S, Masai K, and Fukunaga K
- Subjects
- Female, Humans, Lung diagnostic imaging, Magnetic Resonance Imaging, Lung Neoplasms diagnostic imaging, Multiple Pulmonary Nodules diagnostic imaging
- Abstract
Competing Interests: Competing interests: None declared.
- Published
- 2022
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42. Single-molecule evidence for a chemical ratchet in binding between the cam repressor and its operator.
- Author
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Kabata H, Aramaki H, and Shimamoto N
- Subjects
- Binding Sites, DNA, Bacterial chemistry, Diffusion, Protein Binding, Escherichia coli metabolism, Repressor Proteins chemistry, Repressor Proteins genetics, Repressor Proteins metabolism
- Abstract
The affinity for regulator-operator binding on DNA sometimes depends on the length of the DNA harboring the operator, which is known as the antenna effect. One-dimensional diffusion along DNA has been suggested to be the cause, but this may contradict the binding affinity independent of the reaction pathways, which is derived from the detailed balance of the reaction at equilibrium. Recently, the chemical ratchet was proposed to solve this contradiction by suggesting a stationary state containing microscopic non-equilibrium. In a single-molecule observation, P. putida CamR molecules associate with their operator via one-dimensional diffusion along the DNA, while they mostly dissociated from the operator without the diffusion. Consistently, the observed overall association rate was dependent on the DNA length, while the overall dissociation rate was not, leading to an antenna effect. E. coli RNA polymerase did not show this behavior, and thus it is a specific property of a protein. The bipartite interaction domains containing the helix-turn-helix motif are speculated to be one of the possible causes. The biological significance of the chemical ratchet and a model for its microscopic mechanism are also discussed.
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- 2022
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43. Upregulation of IL-4 receptor signaling pathway in circulating ILC2s from asthma patients.
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Baba R, Kabata H, Shirasaki Y, Kamatani T, Yamagishi M, Irie M, Watanabe R, Matsusaka M, Masaki K, Miyata J, Moro K, Uemura S, and Fukunaga K
- Abstract
Background: Group 2 innate lymphoid cells (ILC2s) produce type 2 cytokines by stimulation with epithelial cell-derived cytokines and are implicated in the pathogenesis of various allergic diseases, including asthma. However, differences in the molecular characteristics of ILC2s between patients with asthma and healthy subjects remain unclear., Objective: We sought to evaluate differences in cytokine production capacity and gene expression profile of ILC2s in the peripheral blood of patients with asthma and healthy subjects., Methods: We evaluated ILC2s derived from 15 patients with asthma and 7 healthy subjects using flow cytometry, live-cell imaging of secretion activity analysis, and RNA-sequencing., Results: ILC2s were sorted as CD45
+ Lineage- CRTH2+ CD127+ CD161+ cells from the peripheral blood of patients with asthma and healthy subjects, and the number of ILC2s was decreased in patients with asthma (851 ± 1134 vs 2679 ± 3009 cells/20 mL blood; P = .0066). However, patient-derived ILC2s were activated to produce more IL-5 and IL-13 in response to stimulation with IL-2, IL-33, and thymic stromal lymphopoietin compared with healthy subject-derived ILC2s ( P = .0032 and P = .0085, respectively). Furthermore, RNA-sequencing analysis revealed that patient-derived ILC2s had different gene expression profiles, such as increased expression in cell growth-related genes ( CDKN1b , CCNG2 , CCND2 , CCN1 ), prostaglandin E receptor ( PTGER2 ), and IL-4 receptor. In addition, a gene set of the IL-4 receptor signaling pathway was significantly upregulated in ILC2s in patients with asthma ( P = .042)., Conclusions: Our results suggest that circulating ILC2s in patients with asthma are preactivated via the IL-4 receptor signaling pathway and produce IL-5 and IL-13 vigorously by stimulation., (© 2022 The Author(s).)- Published
- 2022
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44. DOCK2 is involved in the host genetics and biology of severe COVID-19.
- Author
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Namkoong H, Edahiro R, Takano T, Nishihara H, Shirai Y, Sonehara K, Tanaka H, Azekawa S, Mikami Y, Lee H, Hasegawa T, Okudela K, Okuzaki D, Motooka D, Kanai M, Naito T, Yamamoto K, Wang QS, Saiki R, Ishihara R, Matsubara Y, Hamamoto J, Hayashi H, Yoshimura Y, Tachikawa N, Yanagita E, Hyugaji T, Shimizu E, Katayama K, Kato Y, Morita T, Takahashi K, Harada N, Naito T, Hiki M, Matsushita Y, Takagi H, Aoki R, Nakamura A, Harada S, Sasano H, Kabata H, Masaki K, Kamata H, Ikemura S, Chubachi S, Okamori S, Terai H, Morita A, Asakura T, Sasaki J, Morisaki H, Uwamino Y, Nanki K, Uchida S, Uno S, Nishimura T, Ishiguro T, Isono T, Shibata S, Matsui Y, Hosoda C, Takano K, Nishida T, Kobayashi Y, Takaku Y, Takayanagi N, Ueda S, Tada A, Miyawaki M, Yamamoto M, Yoshida E, Hayashi R, Nagasaka T, Arai S, Kaneko Y, Sasaki K, Tagaya E, Kawana M, Arimura K, Takahashi K, Anzai T, Ito S, Endo A, Uchimura Y, Miyazaki Y, Honda T, Tateishi T, Tohda S, Ichimura N, Sonobe K, Sassa CT, Nakajima J, Nakano Y, Nakajima Y, Anan R, Arai R, Kurihara Y, Harada Y, Nishio K, Ueda T, Azuma M, Saito R, Sado T, Miyazaki Y, Sato R, Haruta Y, Nagasaki T, Yasui Y, Hasegawa Y, Mutoh Y, Kimura T, Sato T, Takei R, Hagimoto S, Noguchi Y, Yamano Y, Sasano H, Ota S, Nakamori Y, Yoshiya K, Saito F, Yoshihara T, Wada D, Iwamura H, Kanayama S, Maruyama S, Yoshiyama T, Ohta K, Kokuto H, Ogata H, Tanaka Y, Arakawa K, Shimoda M, Osawa T, Tateno H, Hase I, Yoshida S, Suzuki S, Kawada M, Horinouchi H, Saito F, Mitamura K, Hagihara M, Ochi J, Uchida T, Baba R, Arai D, Ogura T, Takahashi H, Hagiwara S, Nagao G, Konishi S, Nakachi I, Murakami K, Yamada M, Sugiura H, Sano H, Matsumoto S, Kimura N, Ono Y, Baba H, Suzuki Y, Nakayama S, Masuzawa K, Namba S, Suzuki K, Naito Y, Liu YC, Takuwa A, Sugihara F, Wing JB, Sakakibara S, Hizawa N, Shiroyama T, Miyawaki S, Kawamura Y, Nakayama A, Matsuo H, Maeda Y, Nii T, Noda Y, Niitsu T, Adachi Y, Enomoto T, Amiya S, Hara R, Yamaguchi Y, Murakami T, Kuge T, Matsumoto K, Yamamoto Y, Yamamoto M, Yoneda M, Kishikawa T, Yamada S, Kawabata S, Kijima N, Takagaki M, Sasa N, Ueno Y, Suzuki M, Takemoto N, Eguchi H, Fukusumi T, Imai T, Fukushima M, Kishima H, Inohara H, Tomono K, Kato K, Takahashi M, Matsuda F, Hirata H, Takeda Y, Koh H, Manabe T, Funatsu Y, Ito F, Fukui T, Shinozuka K, Kohashi S, Miyazaki M, Shoko T, Kojima M, Adachi T, Ishikawa M, Takahashi K, Inoue T, Hirano T, Kobayashi K, Takaoka H, Watanabe K, Miyazawa N, Kimura Y, Sado R, Sugimoto H, Kamiya A, Kuwahara N, Fujiwara A, Matsunaga T, Sato Y, Okada T, Hirai Y, Kawashima H, Narita A, Niwa K, Sekikawa Y, Nishi K, Nishitsuji M, Tani M, Suzuki J, Nakatsumi H, Ogura T, Kitamura H, Hagiwara E, Murohashi K, Okabayashi H, Mochimaru T, Nukaga S, Satomi R, Oyamada Y, Mori N, Baba T, Fukui Y, Odate M, Mashimo S, Makino Y, Yagi K, Hashiguchi M, Kagyo J, Shiomi T, Fuke S, Saito H, Tsuchida T, Fujitani S, Takita M, Morikawa D, Yoshida T, Izumo T, Inomata M, Kuse N, Awano N, Tone M, Ito A, Nakamura Y, Hoshino K, Maruyama J, Ishikura H, Takata T, Odani T, Amishima M, Hattori T, Shichinohe Y, Kagaya T, Kita T, Ohta K, Sakagami S, Koshida K, Hayashi K, Shimizu T, Kozu Y, Hiranuma H, Gon Y, Izumi N, Nagata K, Ueda K, Taki R, Hanada S, Kawamura K, Ichikado K, Nishiyama K, Muranaka H, Nakamura K, Hashimoto N, Wakahara K, Sakamoto K, Omote N, Ando A, Kodama N, Kaneyama Y, Maeda S, Kuraki T, Matsumoto T, Yokote K, Nakada TA, Abe R, Oshima T, Shimada T, Harada M, Takahashi T, Ono H, Sakurai T, Shibusawa T, Kimizuka Y, Kawana A, Sano T, Watanabe C, Suematsu R, Sageshima H, Yoshifuji A, Ito K, Takahashi S, Ishioka K, Nakamura M, Masuda M, Wakabayashi A, Watanabe H, Ueda S, Nishikawa M, Chihara Y, Takeuchi M, Onoi K, Shinozuka J, Sueyoshi A, Nagasaki Y, Okamoto M, Ishihara S, Shimo M, Tokunaga Y, Kusaka Y, Ohba T, Isogai S, Ogawa A, Inoue T, Fukuyama S, Eriguchi Y, Yonekawa A, Kan-O K, Matsumoto K, Kanaoka K, Ihara S, Komuta K, Inoue Y, Chiba S, Yamagata K, Hiramatsu Y, Kai H, Asano K, Oguma T, Ito Y, Hashimoto S, Yamasaki M, Kasamatsu Y, Komase Y, Hida N, Tsuburai T, Oyama B, Takada M, Kanda H, Kitagawa Y, Fukuta T, Miyake T, Yoshida S, Ogura S, Abe S, Kono Y, Togashi Y, Takoi H, Kikuchi R, Ogawa S, Ogata T, Ishihara S, Kanehiro A, Ozaki S, Fuchimoto Y, Wada S, Fujimoto N, Nishiyama K, Terashima M, Beppu S, Yoshida K, Narumoto O, Nagai H, Ooshima N, Motegi M, Umeda A, Miyagawa K, Shimada H, Endo M, Ohira Y, Watanabe M, Inoue S, Igarashi A, Sato M, Sagara H, Tanaka A, Ohta S, Kimura T, Shibata Y, Tanino Y, Nikaido T, Minemura H, Sato Y, Yamada Y, Hashino T, Shinoki M, Iwagoe H, Takahashi H, Fujii K, Kishi H, Kanai M, Imamura T, Yamashita T, Yatomi M, Maeno T, Hayashi S, Takahashi M, Kuramochi M, Kamimaki I, Tominaga Y, Ishii T, Utsugi M, Ono A, Tanaka T, Kashiwada T, Fujita K, Saito Y, Seike M, Watanabe H, Matsuse H, Kodaka N, Nakano C, Oshio T, Hirouchi T, Makino S, Egi M, Omae Y, Nannya Y, Ueno T, Katayama K, Ai M, Fukui Y, Kumanogoh A, Sato T, Hasegawa N, Tokunaga K, Ishii M, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, and Okada Y
- Subjects
- Alleles, Animals, Disease Models, Animal, Genetic Predisposition to Disease, Humans, Interferon Type I genetics, Interferon Type I immunology, Japan, Lung pathology, Macrophages, Mesocricetus, Middle Aged, Pneumonia complications, Pyrazoles pharmacology, RNA-Seq, Viral Load, Weight Loss, COVID-19 complications, COVID-19 genetics, COVID-19 immunology, COVID-19 physiopathology, GTPase-Activating Proteins antagonists & inhibitors, GTPase-Activating Proteins genetics, GTPase-Activating Proteins metabolism, Genome-Wide Association Study, Guanine Nucleotide Exchange Factors antagonists & inhibitors, Guanine Nucleotide Exchange Factors genetics, Guanine Nucleotide Exchange Factors metabolism, Host Microbial Interactions genetics, Host Microbial Interactions immunology, SARS-CoV-2 pathogenicity
- Abstract
Identifying the host genetic factors underlying severe COVID-19 is an emerging challenge
1-5 . Here we conducted a genome-wide association study (GWAS) involving 2,393 cases of COVID-19 in a cohort of Japanese individuals collected during the initial waves of the pandemic, with 3,289 unaffected controls. We identified a variant on chromosome 5 at 5q35 (rs60200309-A), close to the dedicator of cytokinesis 2 gene (DOCK2), which was associated with severe COVID-19 in patients less than 65 years of age. This risk allele was prevalent in East Asian individuals but rare in Europeans, highlighting the value of genome-wide association studies in non-European populations. RNA-sequencing analysis of 473 bulk peripheral blood samples identified decreased expression of DOCK2 associated with the risk allele in these younger patients. DOCK2 expression was suppressed in patients with severe cases of COVID-19. Single-cell RNA-sequencing analysis (n = 61 individuals) identified cell-type-specific downregulation of DOCK2 and a COVID-19-specific decreasing effect of the risk allele on DOCK2 expression in non-classical monocytes. Immunohistochemistry of lung specimens from patients with severe COVID-19 pneumonia showed suppressed DOCK2 expression. Moreover, inhibition of DOCK2 function with CPYPP increased the severity of pneumonia in a Syrian hamster model of SARS-CoV-2 infection, characterized by weight loss, lung oedema, enhanced viral loads, impaired macrophage recruitment and dysregulated type I interferon responses. We conclude that DOCK2 has an important role in the host immune response to SARS-CoV-2 infection and the development of severe COVID-19, and could be further explored as a potential biomarker and/or therapeutic target., (© 2022. The Author(s).)- Published
- 2022
- Full Text
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45. The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force.
- Author
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Wang QS, Edahiro R, Namkoong H, Hasegawa T, Shirai Y, Sonehara K, Tanaka H, Lee H, Saiki R, Hyugaji T, Shimizu E, Katayama K, Kanai M, Naito T, Sasa N, Yamamoto K, Kato Y, Morita T, Takahashi K, Harada N, Naito T, Hiki M, Matsushita Y, Takagi H, Ichikawa M, Nakamura A, Harada S, Sandhu Y, Kabata H, Masaki K, Kamata H, Ikemura S, Chubachi S, Okamori S, Terai H, Morita A, Asakura T, Sasaki J, Morisaki H, Uwamino Y, Nanki K, Uchida S, Uno S, Nishimura T, Ishiguro T, Isono T, Shibata S, Matsui Y, Hosoda C, Takano K, Nishida T, Kobayashi Y, Takaku Y, Takayanagi N, Ueda S, Tada A, Miyawaki M, Yamamoto M, Yoshida E, Hayashi R, Nagasaka T, Arai S, Kaneko Y, Sasaki K, Tagaya E, Kawana M, Arimura K, Takahashi K, Anzai T, Ito S, Endo A, Uchimura Y, Miyazaki Y, Honda T, Tateishi T, Tohda S, Ichimura N, Sonobe K, Sassa CT, Nakajima J, Nakano Y, Nakajima Y, Anan R, Arai R, Kurihara Y, Harada Y, Nishio K, Ueda T, Azuma M, Saito R, Sado T, Miyazaki Y, Sato R, Haruta Y, Nagasaki T, Yasui Y, Hasegawa Y, Mutoh Y, Kimura T, Sato T, Takei R, Hagimoto S, Noguchi Y, Yamano Y, Sasano H, Ota S, Nakamori Y, Yoshiya K, Saito F, Yoshihara T, Wada D, Iwamura H, Kanayama S, Maruyama S, Yoshiyama T, Ohta K, Kokuto H, Ogata H, Tanaka Y, Arakawa K, Shimoda M, Osawa T, Tateno H, Hase I, Yoshida S, Suzuki S, Kawada M, Horinouchi H, Saito F, Mitamura K, Hagihara M, Ochi J, Uchida T, Baba R, Arai D, Ogura T, Takahashi H, Hagiwara S, Nagao G, Konishi S, Nakachi I, Murakami K, Yamada M, Sugiura H, Sano H, Matsumoto S, Kimura N, Ono Y, Baba H, Suzuki Y, Nakayama S, Masuzawa K, Namba S, Shiroyama T, Noda Y, Niitsu T, Adachi Y, Enomoto T, Amiya S, Hara R, Yamaguchi Y, Murakami T, Kuge T, Matsumoto K, Yamamoto Y, Yamamoto M, Yoneda M, Tomono K, Kato K, Hirata H, Takeda Y, Koh H, Manabe T, Funatsu Y, Ito F, Fukui T, Shinozuka K, Kohashi S, Miyazaki M, Shoko T, Kojima M, Adachi T, Ishikawa M, Takahashi K, Inoue T, Hirano T, Kobayashi K, Takaoka H, Watanabe K, Miyazawa N, Kimura Y, Sado R, Sugimoto H, Kamiya A, Kuwahara N, Fujiwara A, Matsunaga T, Sato Y, Okada T, Hirai Y, Kawashima H, Narita A, Niwa K, Sekikawa Y, Nishi K, Nishitsuji M, Tani M, Suzuki J, Nakatsumi H, Ogura T, Kitamura H, Hagiwara E, Murohashi K, Okabayashi H, Mochimaru T, Nukaga S, Satomi R, Oyamada Y, Mori N, Baba T, Fukui Y, Odate M, Mashimo S, Makino Y, Yagi K, Hashiguchi M, Kagyo J, Shiomi T, Fuke S, Saito H, Tsuchida T, Fujitani S, Takita M, Morikawa D, Yoshida T, Izumo T, Inomata M, Kuse N, Awano N, Tone M, Ito A, Nakamura Y, Hoshino K, Maruyama J, Ishikura H, Takata T, Odani T, Amishima M, Hattori T, Shichinohe Y, Kagaya T, Kita T, Ohta K, Sakagami S, Koshida K, Hayashi K, Shimizu T, Kozu Y, Hiranuma H, Gon Y, Izumi N, Nagata K, Ueda K, Taki R, Hanada S, Kawamura K, Ichikado K, Nishiyama K, Muranaka H, Nakamura K, Hashimoto N, Wakahara K, Koji S, Omote N, Ando A, Kodama N, Kaneyama Y, Maeda S, Kuraki T, Matsumoto T, Yokote K, Nakada TA, Abe R, Oshima T, Shimada T, Harada M, Takahashi T, Ono H, Sakurai T, Shibusawa T, Kimizuka Y, Kawana A, Sano T, Watanabe C, Suematsu R, Sageshima H, Yoshifuji A, Ito K, Takahashi S, Ishioka K, Nakamura M, Masuda M, Wakabayashi A, Watanabe H, Ueda S, Nishikawa M, Chihara Y, Takeuchi M, Onoi K, Shinozuka J, Sueyoshi A, Nagasaki Y, Okamoto M, Ishihara S, Shimo M, Tokunaga Y, Kusaka Y, Ohba T, Isogai S, Ogawa A, Inoue T, Fukuyama S, Eriguchi Y, Yonekawa A, Kan-O K, Matsumoto K, Kanaoka K, Ihara S, Komuta K, Inoue Y, Chiba S, Yamagata K, Hiramatsu Y, Kai H, Asano K, Oguma T, Ito Y, Hashimoto S, Yamasaki M, Kasamatsu Y, Komase Y, Hida N, Tsuburai T, Oyama B, Takada M, Kanda H, Kitagawa Y, Fukuta T, Miyake T, Yoshida S, Ogura S, Abe S, Kono Y, Togashi Y, Takoi H, Kikuchi R, Ogawa S, Ogata T, Ishihara S, Kanehiro A, Ozaki S, Fuchimoto Y, Wada S, Fujimoto N, Nishiyama K, Terashima M, Beppu S, Yoshida K, Narumoto O, Nagai H, Ooshima N, Motegi M, Umeda A, Miyagawa K, Shimada H, Endo M, Ohira Y, Watanabe M, Inoue S, Igarashi A, Sato M, Sagara H, Tanaka A, Ohta S, Kimura T, Shibata Y, Tanino Y, Nikaido T, Minemura H, Sato Y, Yamada Y, Hashino T, Shinoki M, Iwagoe H, Takahashi H, Fujii K, Kishi H, Kanai M, Imamura T, Yamashita T, Yatomi M, Maeno T, Hayashi S, Takahashi M, Kuramochi M, Kamimaki I, Tominaga Y, Ishii T, Utsugi M, Ono A, Tanaka T, Kashiwada T, Fujita K, Saito Y, Seike M, Watanabe H, Matsuse H, Kodaka N, Nakano C, Oshio T, Hirouchi T, Makino S, Egi M, Omae Y, Nannya Y, Ueno T, Takano T, Katayama K, Ai M, Kumanogoh A, Sato T, Hasegawa N, Tokunaga K, Ishii M, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, and Okada Y
- Subjects
- Humans, Japan epidemiology, Lectins, C-Type genetics, Membrane Glycoproteins genetics, Polymorphism, Single Nucleotide, Quantitative Trait Loci genetics, Receptors, Immunologic genetics, COVID-19 epidemiology, COVID-19 genetics, Genome-Wide Association Study
- Abstract
Coronavirus disease 2019 (COVID-19) is a recently-emerged infectious disease that has caused millions of deaths, where comprehensive understanding of disease mechanisms is still unestablished. In particular, studies of gene expression dynamics and regulation landscape in COVID-19 infected individuals are limited. Here, we report on a thorough analysis of whole blood RNA-seq data from 465 genotyped samples from the Japan COVID-19 Task Force, including 359 severe and 106 non-severe COVID-19 cases. We discover 1169 putative causal expression quantitative trait loci (eQTLs) including 34 possible colocalizations with biobank fine-mapping results of hematopoietic traits in a Japanese population, 1549 putative causal splice QTLs (sQTLs; e.g. two independent sQTLs at TOR1AIP1), as well as biologically interpretable trans-eQTL examples (e.g., REST and STING1), all fine-mapped at single variant resolution. We perform differential gene expression analysis to elucidate 198 genes with increased expression in severe COVID-19 cases and enriched for innate immune-related functions. Finally, we evaluate the limited but non-zero effect of COVID-19 phenotype on eQTL discovery, and highlight the presence of COVID-19 severity-interaction eQTLs (ieQTLs; e.g., CLEC4C and MYBL2). Our study provides a comprehensive catalog of whole blood regulatory variants in Japanese, as well as a reference for transcriptional landscapes in response to COVID-19 infection., (© 2022. The Author(s).)
- Published
- 2022
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46. Lysophosphatidylcholine Acyltransferase 1 Deficiency Promotes Pulmonary Emphysema via Apoptosis of Alveolar Epithelial Cells.
- Author
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Tanosaki T, Mikami Y, Shindou H, Suzuki T, Hashidate-Yoshida T, Hosoki K, Kagawa S, Miyata J, Kabata H, Masaki K, Hamamoto R, Kage H, Miyashita N, Makita K, Matsuzaki H, Suzuki Y, Mitani A, Nagase T, Shimizu T, and Fukunaga K
- Subjects
- 1-Acylglycerophosphocholine O-Acyltransferase genetics, Alveolar Epithelial Cells metabolism, Animals, Apoptosis, Cells, Cultured, Cigarette Smoking, Epithelial Cells metabolism, Humans, Mice, Mice, Knockout, Pancreatic Elastase, Surface-Active Agents, 1-Acylglycerophosphocholine O-Acyltransferase metabolism, Emphysema, Pulmonary Emphysema metabolism
- Abstract
Chronic obstructive pulmonary disease (COPD) is primarily caused by inhalation of cigarette smoke and is the third leading cause of death worldwide. Pulmonary surfactant, a complex of phospholipids and proteins, plays an essential role in respiration by reducing the surface tension in the alveoli. Lysophosphatidylcholine acyltransferase 1 (LPCAT1) is an enzyme that catalyzes the biosynthesis of surfactant lipids and is expressed in type 2 alveolar epithelial cells. Its dysfunction is suggested to be involved in various lung diseases; however, the relationship between LPCAT1 and COPD remains unclear. To investigate the role of LPCAT1 in the pathology of COPD, we analyzed an elastase-induced emphysema model using Lpcat1 knockout (KO) mice. In Lpcat1 KO mice, elastase-induced emphysema was significantly exacerbated with increased apoptotic cells, which was not ameliorated by supplementation with dipalmitoylphosphatidylcholine, which is a major component of the surfactant synthesized by LPCAT1. We subsequently evaluated the effects of cigarette smoking on primary human type 2 alveolar epithelial cells (hAEC2s) and found that cigarette smoke extract (CSE) downregulated the expression of Lpcat1. Furthermore, RNA sequencing analysis revealed that the apoptosis pathway was significantly enriched in CSE-treated primary hAEC2s. Finally, we downregulated the expression of Lpcat1 using small interfering RNA, which resulted in enhanced CSE-induced apoptosis in A549 cells. Taken together, cigarette smoke-induced downregulation of LPCAT1 can promote the exacerbation of pulmonary emphysema by increasing the susceptibility of alveolar epithelial cells to apoptosis, thereby suggesting that Lpcat1 is a novel therapeutic target for irreversible emphysema., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
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47. One-year follow-up CT findings in COVID-19 patients: A systematic review and meta-analysis.
- Author
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Watanabe A, So M, Iwagami M, Fukunaga K, Takagi H, Kabata H, and Kuno T
- Subjects
- Disease Progression, Follow-Up Studies, Humans, Lung diagnostic imaging, Retrospective Studies, SARS-CoV-2, Tomography, X-Ray Computed methods, COVID-19 diagnostic imaging
- Abstract
Coronavirus disease 2019 (COVID-19) often causes radiological and functional pulmonary sequelae. However, evidence on 1-year follow-up of pulmonary sequelae is limited. We aimed to investigate the characteristics and time-course of pulmonary sequelae after recovery from COVID-19 through 1-year follow-up. We searched PubMed and EMBASE databases on 25 February 2022, and included studies with computed tomography (CT) findings at the 1-year follow-up. The extracted data on CT findings were analysed using a one-group meta-analysis. We further analysed the data in relation to COVID-19 severity, improvement rate and lung function. Fifteen eligible studies (N = 3134) were included. One year after COVID-19, 32.6% (95% CI 24.0-42.6, I
2 = 92.9%) presented with residual CT abnormalities. Ground-glass opacity and fibrotic-like changes were frequently observed in 21.2% (95% CI 15.4-28.4, I2 = 86.7%) and 20.6% (95% CI 11.0-35.2, I2 = 91.9%), respectively. While the gradual recovery was seen on CT (52.9% [mid-term] vs. 32.6% [1 year]), the frequency of CT abnormalities was higher in the severe/critical cases than in the mild/moderate cases (37.7% vs. 20.7%). In particular, fibrotic changes showed little improvement between 4-7 months and 1 year after COVID-19. Pulmonary function tests at 1 year also showed the decline in diffusing capacity of the lung for carbon monoxide, especially in severe/critical cases. Our meta-analysis indicated that residual CT abnormalities were common in hospitalized COVID-19 patients 1 year after recovery, especially fibrotic changes in severe/critical cases. As these sequelae may last long, vigilant observations and longer follow-up periods are warranted., (© 2022 Asian Pacific Society of Respirology.)- Published
- 2022
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48. Current overview of the role of neuropeptides in ILC2s and future directions.
- Author
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Irie M, Sasahara K, Artis D, and Kabata H
- Subjects
- Cytokines, Humans, Lymphocytes, Immunity, Innate, Neuropeptides pharmacology
- Abstract
The neural and immune systems are closely connected, and recently, their molecular mechanisms and relationships with diseases have attracted substantial attention. Particularly, it has been increasingly reported that ILC2s, which produce type 2 cytokines independent of acquired immunity, are regulated by neuropeptides such as catecholamines, acetylcholine, vasoactive intestinal peptide, neuromedins, and calcitonin gene-related peptide. However, the regulatory mechanisms in this regard are only partially understood, implying that further studies are still needed to clarify the complete mechanisms and processes. In this review, we summarize current reports on the regulatory effect of neuropeptides on ILC2s, some of which have conflicting results, possibly owing to the complexity of G-protein coupled receptors. By summarizing the current evidence, we hope to be able to identify what is currently unknown as well as what needs to be clarified in the future., (Copyright © 2022 Japanese Society of Allergology. Production and hosting by Elsevier B.V. All rights reserved.)
- Published
- 2022
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- View/download PDF
49. Heterogeneity of ILC2s in the Lungs.
- Author
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Asaoka M, Kabata H, and Fukunaga K
- Subjects
- Animals, Cytokines, Immunologic Memory, Lung, Mice, Immunity, Innate, Lymphocytes
- Abstract
Group 2 innate lymphoid cells (ILC2s) are GATA3-expressing type 2 cytokine-producing innate lymphocytes that are present in various organs throughout the body. Basically, ILC2s are tissue-resident cells associated with a variety of pathological conditions in each tissue. Differences in the tissue-specific properties of ILC2s are formed by the post-natal tissue environment; however, diversity exists among ILC2s within each localized tissue due to developmental timing and activation. Diversity between steady-state and activated ILC2s in mice and humans has been gradually clarified with the advancement of single-cell RNA-seq technology. Another layer of complexity is that ILC2s can acquire other ILC-like functions, depending on their tissue environment. Further, ILC2s with immunological memory and exhausted ILC2s are both present in tissues, and the nature of ILC2s varies with senescence. To clarify how ILC2s affect human diseases, research should be conducted with a comprehensive understanding of ILC2s, taking into consideration the diversity of ILC2s rather than a snapshot of a single section. In this review, we summarize the current understanding of the heterogeneity of ILC2s in the lungs and highlight a novel field of immunology., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Asaoka, Kabata and Fukunaga.)
- Published
- 2022
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50. Early intubation and decreased in-hospital mortality in patients with coronavirus disease 2019.
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Yamamoto R, Kaito D, Homma K, Endo A, Tagami T, Suzuki M, Umetani N, Yagi M, Nashiki E, Suhara T, Nagata H, Kabata H, Fukunaga K, Yamakawa K, Hayakawa M, Ogura T, Hirayama A, Yasunaga H, and Sasaki J
- Subjects
- Hospital Mortality, Humans, Hypoxia, Intubation, Intratracheal, Oxygen, Retrospective Studies, SARS-CoV-2, COVID-19
- Abstract
Background: Some academic organizations recommended that physicians intubate patients with COVID-19 with a relatively lower threshold of oxygen usage particularly in the early phase of pandemic. We aimed to elucidate whether early intubation is associated with decreased in-hospital mortality among patients with novel coronavirus disease 2019 (COVID-19) who required intubation., Methods: A multicenter, retrospective, observational study was conducted at 66 hospitals in Japan where patients with moderate-to-severe COVID-19 were treated between January and September 2020. Patients who were diagnosed as COVID-19 with a positive reverse-transcription polymerase chain reaction test and intubated during admission were included. Early intubation was defined as intubation conducted in the setting of ≤ 6 L/min of oxygen usage. In-hospital mortality was compared between patients with early and non-early intubation. Inverse probability weighting analyses with propensity scores were performed to adjust patient demographics, comorbidities, hemodynamic status on admission and time at intubation, medications before intubation, severity of COVID-19, and institution characteristics. Subgroup analyses were conducted on the basis of age, severity of hypoxemia at intubation, and days from admission to intubation., Results: Among 412 patients eligible for the study, 110 underwent early intubation. In-hospital mortality was lower in patients with early intubation than those with non-early intubation (18 [16.4%] vs. 88 [29.1%]; odds ratio, 0.48 [95% confidence interval 0.27-0.84]; p = 0.009, and adjusted odds ratio, 0.28 [95% confidence interval 0.19-0.42]; p < 0.001). The beneficial effects of early intubation were observed regardless of age and severity of hypoxemia at time of intubation; however, early intubation was associated with lower in-hospital mortality only among patients who were intubated later than 2 days after admission., Conclusions: Early intubation in the setting of ≤ 6 L/min of oxygen usage was associated with decreased in-hospital mortality among patients with COVID-19 who required intubation. Trial Registration None., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
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