606 results on '"H. Hagen"'
Search Results
2. The co-inhibitory receptor TIGIT regulates NK cell function and is upregulated in human intrahepatic CD56bright NK cells
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Annerose E. Ziegler, Pia Fittje, Luisa M. Müller, Annika E. Ahrenstorf, Kerri Hagemann, Sven H. Hagen, Leonard U. Hess, Annika Niehrs, Tobias Poch, Gevitha Ravichandran, Sebastian M. Löbl, Benedetta Padoan, Sébastien Brias, Jana Hennesen, Myrtille Richard, Laura Richert, Sven Peine, Karl J. Oldhafer, Lutz Fischer, Christoph Schramm, Glòria Martrus, Madeleine J. Bunders, Marcus Altfeld, and Sebastian Lunemann
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intrahepatic NK cells ,liver organoids ,single-cell mRNA analysis ,immune tolerance ,tissue homeostasis ,TIGIT ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The crosstalk between NK cells and their surrounding environment is enabled through activating and inhibitory receptors, which tightly control NK cell activity. The co-inhibitory receptor TIGIT decreases NK cell cytotoxicity and is involved in NK cell exhaustion, but has also been associated with liver regeneration, highlighting that the contribution of human intrahepatic CD56bright NK cells in regulating tissue homeostasis remains incompletely understood. A targeted single-cell mRNA analysis revealed distinct transcriptional differences between matched human peripheral blood and intrahepatic CD56bright NK cells. Multiparameter flow cytometry identified a cluster of intrahepatic NK cells with overlapping high expression of CD56, CD69, CXCR6, TIGIT and CD96. Intrahepatic CD56bright NK cells also expressed significantly higher protein surface levels of TIGIT, and significantly lower levels of DNAM-1 compared to matched peripheral blood CD56bright NK cells. TIGIT+ CD56bright NK cells showed diminished degranulation and TNF-α production following stimulation. Co-incubation of peripheral blood CD56bright NK cells with human hepatoma cells or primary human hepatocyte organoids resulted in migration of NK cells into hepatocyte organoids and upregulation of TIGIT and downregulation of DNAM-1 expression, in line with the phenotype of intrahepatic CD56bright NK cells. Intrahepatic CD56bright NK cells represent a transcriptionally, phenotypically, and functionally distinct population of NK cells that expresses higher levels of TIGIT and lower levels of DNAM-1 than matched peripheral blood CD56bright NK cells. Increased expression of inhibitory receptors by NK cells within the liver environment can contribute to tissue homeostasis and reduction of liver inflammation.
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- 2023
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3. Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
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Tim Van Den Bossche, Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J. Giannone, Timothy J. Griffin, Live H. Hagen, Rashi Halder, Céline Henry, Robert L. Hettich, Robert Heyer, Pratik Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L. Peters, Olivier Pible, Pedro T. Queiros, Udo Reichl, Bernhard Y. Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, and Thilo Muth
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Science - Abstract
The authors present CAMPI, a large-scale multi-lab comparison of diverse metaproteomics workflows. CAMPI provides insights into the robustness of current methods, suggests further improvements to the field, and may pave the way for future community-driven metaproteomics projects.
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- 2021
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4. Long-term effects of cognitive training in Parkinson’s disease: A randomized, controlled trial
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Tim D. van Balkom, Odile A. van den Heuvel, Henk W. Berendse, Ysbrand D. van der Werf, Rob H. Hagen, Tanja Berk, and Chris Vriend
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Parkinson’s disease ,Cognitive training ,RCT ,Cognitive impairment ,Long-term effects ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Computerized cognitive training may be promising to improve cognitive impairment in Parkinson’s disease and has even been suggested to delay cognitive decline. However, evidence to date is limited. The aim of this study was to assess the durability of eight-week cognitive training effects at up to two years follow-up. Methods: One hundred and thirty-six (136) individuals with Parkinson’s disease, subjective cognitive complaints but without severe cognitive impairment (Montreal Cognitive Assessment ≥ 22) participated in this double-blind RCT. Participants underwent an eight-week home-based intervention of either adaptive, computerized cognitive training with BrainGymmer (n = 68) or an active control (n = 68). They underwent extensive neuropsychological assessment, psychiatric questionnaires and motor symptom assessment at baseline and one and two years after the intervention. We used mixed-model analyses to assess changes in cognitive function at follow-up and performed Fisher’s exact tests to assess conversion of cognitive status. Results: There were no group differences on any neuropsychological assessment outcome at one- and two-year follow-up. Groups were equally likely to show conversion of cognitive status at follow-up. A considerable amount of assessments was missed (1y: n = 27; 2y: n = 33), most notably due to COVID-19 regulations. Conclusions: Eight-week cognitive training did not affect long-term cognitive function in Parkinson’s disease. Future studies may focus on one cognitive subgroup to enhance reliability of study results. Intervention improvements are needed to work towards effective, lasting treatment options.
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- 2023
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5. Light ‘Em up: Efficient Screening of Gold Foil Grids in Cryo-EM
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Wim J. H. Hagen
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cryo electron microscopy (cryo-EM) ,structural biology ,screening ,sample preparation ,method ,Biology (General) ,QH301-705.5 - Abstract
Transmission electron cryo-microscopy (cryo-EM) allows for obtaining 3D structural information by imaging macromolecules embedded in thin layers of amorphous ice. To obtain high-resolution structural information, samples need to be thin to minimize inelastic scattering which blurs images. During data collection sessions, time spent on finding areas on the cryo-EM grid with optimal ice thickness should be minimized as imaging time on high-end Transmission Electron Microscope TEM systems is costly. Recently, grids covered with thin gold films have become popular due to their stability and reduced beam-induced motion of the sample. Gold foil grids have substantially different densities between the gold foil and ice, effectively resulting in the loss of dynamic range between thin and thick regions of ice, making it challenging to find areas with suitable ice thickness efficiently during grid screening and thus increase expensive imaging time. Here, an energy filter-based plasmon imaging is presented as a fast and easy method for grid screening of the gold foil grids.
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- 2022
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6. Benchmarking tomographic acquisition schemes for high-resolution structural biology
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Beata Turoňová, Wim J. H. Hagen, Martin Obr, Shyamal Mosalaganti, J. Wouter Beugelink, Christian E. Zimmerli, Hans-Georg Kräusslich, and Martin Beck
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Science - Abstract
Here the authors systematically benchmark cryo-electron tomography acquisition schemes to optimize the attainable resolution for subtomogram averaging, and find that dose-symmetric acquisition with even angular sampling provides a better outcome than most currently used acquisition schemes.
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- 2020
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7. The cost-effectiveness of specialized nursing interventions for people with Parkinson’s disease: the NICE-PD study protocol for a randomized controlled clinical trial
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Danique L. M. Radder, Herma H. Lennaerts, Hester Vermeulen, Thies van Asseldonk, Cathérine C. S. Delnooz, Rob H. Hagen, Marten Munneke, Bastiaan R. Bloem, and Nienke M. de Vries
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Parkinson’s disease ,Parkinson’s disease nurse specialist ,Nursing ,Quality of life ,Cost-effectiveness ,Multidisciplinary care ,Medicine (General) ,R5-920 - Abstract
Abstract Background Current guidelines recommend that every person with Parkinson’s disease (PD) should have access to Parkinson’s disease nurse specialist (PDNS) care. However, there is little scientific evidence of the cost-effectiveness of PDNS care. This hampers wider implementation, creates unequal access to care, and possibly leads to avoidable disability and costs. Therefore, we aim to study the (cost-)effectiveness of specialized nursing care provided by a PDNS compared with usual care (without PDNS) for people with PD in all disease stages. To gain more insight into the deployed interventions and their effects, a preplanned subgroup analysis will be performed on the basis of disease duration (diagnosis 10 years ago). Methods We will perform an 18-month, single-blind, randomized controlled clinical trial in eight community hospitals in the Netherlands. A total of 240 people with PD who have not been treated by a PDNS over the past 2 years will be included, independent of disease severity or duration. In each hospital, 30 patients will randomly be allocated in a 1:1 ratio to receive either care by a PDNS (who works according to a recent guideline on PDNS care) or usual care. We will use two co-primary outcomes: quality of life (measured with the Parkinson’s Disease Questionnaire-39) and motor symptoms (measured with the Movement Disorders Society-sponsored revision of the Unified Parkinson’s Disease Rating Scale part III). Secondary outcomes include nonmotor symptoms, health-related quality of life, experienced quality of care, self-management, medication adherence, caregiver burden, and coping skills. Data will be collected after 12 months and 18 months by a blinded researcher. A healthcare utilization and productivity loss questionnaire will be completed every 3 months. Discussion The results of this trial will have an immediate impact on the current care of people with PD. We hypothesize that by offering more patients access to PDNS care, quality of life will increase. We also expect healthcare costs to remain equal because increases in direct medical costs (funding additional nurses) will be offset by a reduced number of consultations with the general practitioner and neurologist. If these outcomes are reached, wide implementation of PDNS care will be warranted. Trial registration ClinicalTrials.gov, NCT03830190. Registered February 5, 2019 (retrospectively registered).
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- 2020
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8. Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake
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Arjen J. Jakobi, Stefan T. Huber, Simon A. Mortensen, Sebastian W. Schultz, Anthimi Palara, Tanja Kuhm, Birendra Kumar Shrestha, Trond Lamark, Wim J. H. Hagen, Matthias Wilmanns, Terje Johansen, Andreas Brech, and Carsten Sachse
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Science - Abstract
PB1-mediated oligomerization of p62/SQSTM1 is essential for its function as a selective autophagy receptor. Here the authors present the cryo-EM structures of human and Arabidopsis PB1 domain helical assemblies and find that a conserved double arginine finger in the PB1 domain is important for p62 polymerisation and lysosomal targeting of p62.
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- 2020
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9. Homo medicus : The transition to meat eating increased pathogen pressure and the use of pharmacological plants in Homo
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Edward H. Hagen, Aaron D. Blackwell, Aaron D. Lightner, and Roger J. Sullivan
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recreational drugs ,traditional medicine ,immunity ,self-medication ,spices ,zoonotic disease - Abstract
The human lineage transitioned to a more carnivorous niche 2.6 mya and evolved a large body size and slower life history, which likely increased zoonotic pathogen pressure. Evidence for this increase includes increased zoonotic infections in modern hunter-gatherers and bushmeat hunters, exceptionally low stomach pH compared to other primates, and divergence in immune-related genes. These all point to change, and probably intensification, in the infectious disease environment of Homo compared to earlier hominins and other apes. At the same time, the brain, an organ in which immune responses are constrained, began to triple in size. We propose that the combination of increased zoonotic pathogen pressure and the challenges of defending a large brain and body from pathogens in a long-lived mammal, selected for intensification of the plant-based self-medication strategies already in place in apes and other primates. In support, there is evidence of medicinal plant use by hominins in the middle Paleolithic, and all cultures today have sophisticated, plant-based medical systems, add spices to food, and regularly consume psychoactive plant substances that are harmful to helminths and other pathogens. We propose that the computational challenges of discovering effective plant-based treatments, the consequent ability to consume more energy-rich animal foods, and the reduced reliance on energetically-costly immune responses helped select for increased cognitive abilities and unique exchange relationships in Homo. In the story of human evolution, which has long emphasized hunting skills, medical skills had an equal role to play.
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- 2023
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10. The impact of information about tobacco-related reproductive vs. general health risks on South Indian women's tobacco use decisions
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Caitlyn D. Placek, Renee E. Magnan, Vijaya Srinivas, Poornima Jaykrishna, Kavitha Ravi, Anisa Khan, Purnima Madhivanan, and Edward H. Hagen
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tobacco control ,randomized controlled trial ,reproductive health ,India ,evolutionary theory ,Human evolution ,GN281-289 ,Evolution ,QH359-425 - Abstract
Smokeless tobacco use among Indian women is increasing despite prevention efforts. Evolutionary theories suggest that reproductive-aged women should be more concerned about immediate threats to reproduction than threats to survival occurring late in life. This study therefore compared an anti-tobacco intervention that emphasized near-term reproductive harms to one involving general harms occurring later in life. Scheduled Tribal women (N = 92) from Karnataka, India participated in this study. At baseline, women reported tobacco use and knowledge of harms, provided a saliva sample to assess use, and randomly viewed either a general harms presentation (GHP) or reproductive harms presentation (RHP). At followup, women reported their use, knowledge of harms and intentions to quit, and provided another saliva sample. At baseline, participants were aware of general harms but not reproductive harms. Both interventions increased knowledge of harms. Women in the RHP condition did not list more harms than women in the GHP condition, however, and the RHP was not more effective in reducing tobacco use than the GHP. In the RHP condition fetal health was particularly salient. In the GHP condition, oral health was highly salient, aligning with the local disease ecology and research on tobacco use and attractiveness.
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- 2021
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11. Ethnoscientific expertise and knowledge specialisation in 55 traditional cultures
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Aaron D. Lightner, Cynthiann Heckelsmiller, and Edward H. Hagen
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Ethnoscience ,expertise ,cultural transmission ,conceptual knowledge ,eHRAF ,Human evolution ,GN281-289 ,Evolution ,QH359-425 - Abstract
People everywhere acquire high levels of conceptual knowledge about their social and natural worlds, which we refer to as ethnoscientific expertise. Evolutionary explanations for expertise are still widely debated. We analysed ethnographic text records (N = 547) describing ethnoscientific expertise among 55 cultures in the Human Relations Area Files to investigate the mutually compatible roles of collaboration, proprietary knowledge, cultural transmission, honest signalling, and mate provisioning. We found relatively high levels of evidence for collaboration, proprietary knowledge, and cultural transmission, and lower levels of evidence for honest signalling and mate provisioning. In our exploratory analyses, we found that whether expertise involved proprietary vs. transmitted knowledge depended on the domain of expertise. Specifically, medicinal knowledge was positively associated with secretive and specialised knowledge for resolving uncommon and serious problems, i.e. proprietary knowledge. Motor skill-related expertise, such as subsistence and technological skills, was positively associated with broadly competent and generous teachers, i.e. cultural transmission. We also found that collaborative expertise was central to both of these models, and was generally important across different knowledge and skill domains.
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- 2021
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12. Acculturation and market integration are associated with greater trust among Tanzanian Maasai pastoralists
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Aaron D. Lightner and Edward H. Hagen
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prestige bias ,risk ,cultural transmission ,trust ,acculturation ,market integration ,Human evolution ,GN281-289 ,Evolution ,QH359-425 - Abstract
Acting on socially learned information involves risk, especially when the consequences imply certain costs with uncertain benefits. Current evolutionary theories argue that decision-makers evaluate and respond to this information based on context cues, such as prestige (the prestige bias model) and/or incentives (the risk and incentives model). We tested the roles of each in explaining trust using a preregistered vignette-based study involving advice about livestock among Maasai pastoralists. In exploratory analyses, we also investigated how the relevance of each might be influenced by recent cultural and economic changes, such as market integration and shifting cultural values. Our confirmatory analysis failed to support the prestige bias model, and partially supported the risk and incentives model. Exploratory analyses suggested that regional acculturation varied strongly between northern vs. southern areas, divided by a small mountain. Consistent with the idea that trust varies with socially transmitted values and regional differences in market integration, people living near densely populated towns in the southern region were more likely to trust socially learned information about livestock. Higher trust among market-integrated participants might reflect a coordination solution in a region where traditional pastoralism is beset with novel conflicts of interest.
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- 2021
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13. Bargaining and interdependence: Common parent-offspring conflict resolution strategies among Chon Chuuk and their implications for suicidal behavior
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Kristen L. Syme, Edward H. Hagen, and Social Psychology
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Arts and Humanities (miscellaneous) ,Anthropology ,SDG 10 - Reduced Inequalities - Abstract
The anthropology of Pacific cultures spotlights social conflict as a proximate cause of suicide. Ethnographic accounts suggest that suicidal behaviors are high-cost conflict-resolution strategies. We investigate parent-child conflicts and the strategies adolescents and young adults use to resolve them, using concepts from human behavioral ecology to interpret results from in-depth, semi-structured interviews with 58 Chon Chuuk participants. One strategy for resolving conflicts in one's favor is to impose costs through the threat or use of violence, but an alternative strategy for those who lack social power or formidability involves social withdrawal, or withholding cooperation, until the interdependent parties reach an agreement. The Chuukese term amwunumwun refers to a spectrum of social withdrawal, including avoidance, running away, and suicide. Strategies involving withholding cooperation were the most reported child behavioral response. As predicted, low-cost strategies, such as negotiation, were associated with nonsevere conflicts (e.g., playing with friends), whereas high-cost withholding cooperation, such as running away, was associated with severe conflicts (e.g., labor exploitation). Importantly, withholding cooperation was often, but not always, associated with outcomes favoring the child. We propose that withholding cooperation is a culturally ubiquitous strategy, ranging from avoidance to suicidality, used by the powerless to achieve more favorable outcomes. [adolescence, parent-offspring conflict, suicide, Micronesia].
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- 2023
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14. Metabolic influence of core ciliates within the rumen microbiome
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Thea O. Andersen, Ianina Altshuler, Arturo Vera-Ponce de León, Juline M. Walter, Emily McGovern, Kate Keogh, Cécile Martin, Laurence Bernard, Diego P. Morgavi, Tansol Park, Zongjun Li, Yu Jiang, Jeffrey L. Firkins, Zhongtang Yu, Torgeir R. Hvidsten, Sinead M. Waters, Milka Popova, Magnus Ø. Arntzen, Live H. Hagen, and Phillip B. Pope
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Microbiology ,Ecology, Evolution, Behavior and Systematics - Abstract
Protozoa comprise a major fraction of the microbial biomass in the rumen microbiome, of which the entodiniomorphs (order: Entodiniomorphida) and holotrichs (order: Vestibuliferida) are consistently observed to be dominant across a diverse genetic and geographical range of ruminant hosts. Despite the apparent core role that protozoal species exert, their major biological and metabolic contributions to rumen function remain largely undescribed in vivo. Here, we have leveraged (meta)genome-centric metaproteomes from rumen fluid samples originating from both cattle and goats fed diets with varying inclusion levels of lipids and starch, to detail the specific metabolic niches that protozoa occupy in the context of their microbial co-habitants. Initial proteome estimations via total protein counts and label-free quantification highlight that entodiniomorph species Entodinium and Epidinium as well as the holotrichs Dasytricha and Isotricha comprise an extensive fraction of the total rumen metaproteome. Proteomic detection of protozoal metabolism such as hydrogenases (Dasytricha, Isotricha, Epidinium, Enoploplastron), carbohydrate-active enzymes (Epidinium, Diplodinium, Enoploplastron, Polyplastron), microbial predation (Entodinium) and volatile fatty acid production (Entodinium and Epidinium) was observed at increased levels in high methane-emitting animals. Despite certain protozoal species having well-established reputations for digesting starch, they were unexpectedly less detectable in low methane emitting-animals fed high starch diets, which were instead dominated by propionate/succinate-producing bacterial populations suspected of being resistant to predation irrespective of host. Finally, we reaffirmed our abovementioned observations in geographically independent datasets, thus illuminating the substantial metabolic influence that under-explored eukaryotic populations have in the rumen, with greater implications for both digestion and methane metabolism.
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- 2023
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15. Depression and suicidality as evolved credible signals of need in social conflicts
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Michael R. Gaffney, Kai H. Adams, Kristen L. Syme, Edward H. Hagen, and Social Psychology
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Suicide ,SDG 3 - Good Health and Well-being ,Arts and Humanities (miscellaneous) ,Costly signaling ,Depression ,Evolutionary medicine ,Mental health ,Experimental and Cognitive Psychology ,Ecology, Evolution, Behavior and Systematics - Abstract
Mental health professionals generally view major depression and suicidality as pathological responses to stress that elicit aversive responses from others. An alternative hypothesis grounded in evolutionary theory contends that depression and suicidality are honest signals of need in response to adversity that can increase support from reluctant others when there are conflicts of interest. To test this hypothesis, we examined responses to emotional signals in a preregistered experimental vignette study involving claims of substantial need in the presence of conflicts of interest and private information about the signaler's true level of need. In a sample of 1240 participants recruited from Amazon Mechanical Turk, costlier signals like depression and suicidality increased perceptions of need, reduced perceptions of manipulativeness, and increased likelihood of support compared to simple verbal requests and crying without further symptoms. The effect of signaling on likelihood of support was largely mediated by the effect of signaling on participants' belief that the signaler was genuinely in need. Our results support the hypothesis that depression and suicidality, apparent human universals, are credible signals of need that elicit more support than verbal requests, sad expressions, and crying when there are conflicts of interest.
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- 2022
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16. Effect of eight-week online cognitive training in Parkinson's disease
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Tim D. van Balkom, Henk W. Berendse, Ysbrand D. van der Werf, Jos W.R. Twisk, Carel F.W. Peeters, Adriaan W. Hoogendoorn, Rob H. Hagen, Tanja Berk, Odile A. van den Heuvel, Chris Vriend, Anatomy and neurosciences, Neurology, Amsterdam Neuroscience - Neurodegeneration, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, Amsterdam Neuroscience - Systems & Network Neuroscience, Epidemiology and Data Science, APH - Health Behaviors & Chronic Diseases, APH - Methodology, Psychiatry, Amsterdam Neuroscience - Brain Imaging, and APH - Mental Health
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Parkinson's disease ,Parkinson Disease ,Cognitive rehabilitation ,Wiskundige en Statistische Methoden - Biometris ,Cognitive impairment ,Cognition ,Neurology ,Double-Blind Method ,Cognitive training ,Humans ,Dementia ,Cognitive Dysfunction ,Female ,Neurology (clinical) ,Geriatrics and Gerontology ,Cognition Disorders ,Mathematical and Statistical Methods - Biometris ,RCT - Abstract
Introduction: Cognitive training (CT) has been proposed as a treatment option for cognitive impairment in Parkinson's disease (PD). We aimed to assess the efficacy of adaptive, computerized CT on cognitive function in PD. Methods: In this double-blind, randomized controlled trial we enrolled PD patients that experienced substantial subjective cognitive complaints. Over a period of eight weeks, participants underwent 24 sessions of computerized multi-domain CT or an active control intervention for 45 min each (randomized 1:1). The primary outcome was the accuracy on the Tower of London task; secondary outcomes included effects on other neuropsychological outcomes and subjective cognitive complaints. Outcomes were assessed before and after training and at six-months follow-up, and analyzed with multivariate mixed-model analyses. Results: The intention-to-treat population consisted of 136 participants (n = 68 vs. n = 68, age M: 62.9y, female: 39.7%). Multivariate mixed-model analyses showed no group difference on the Tower of London accuracy corrected for baseline performance (n = 130): B: −0.06, 95% CI: −0.27 to 0.15, p = 0.562. Participants in the CT group were on average 0.30 SD (i.e., 1.5 s) faster on difficulty load 4 of this task (secondary outcome): 95% CI: −0.55 to −0.06, p = 0.015. CT did not reduce subjective cognitive complaints. At follow-up, no group differences were found. Conclusions: This study shows no beneficial effect of eight-week computerized CT on the primary outcome (i.e., planning accuracy) and only minor improvements on secondary outcomes (i.e., processing speed) with limited clinical impact. Personalized or ecologically valid multi-modal intervention methods could be considered to achieve clinically meaningful and lasting effects.
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- 2022
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17. Concepts and Consequences of a Core Gut Microbiota for Animal Growth and Development
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Daphne Perlman, Marina Martínez-Álvaro, Sarah Moraïs, Ianina Altshuler, Live H. Hagen, Elie Jami, Rainer Roehe, Phillip B. Pope, and Itzhak Mizrahi
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General Veterinary ,Microbiota ,Genetics ,Animals ,Animal Science and Zoology ,Growth and Development ,Gastrointestinal Microbiome ,Biotechnology - Abstract
Animal microbiomes are occasionally considered as an extension of host anatomy, physiology, and even their genomic architecture. Their compositions encompass variable and constant portions when examined across multiple hosts. The latter, termed the core microbiome, is viewed as more accommodated to its host environment and suggested to benefit host fitness. Nevertheless, discrepancies in its definitions, characteristics, and importance to its hosts exist across studies. We survey studies that characterize the core microbiome, detail its current definitions and available methods to identify it, and emphasize the crucial need to upgrade and standardize the methodologies among studies. We highlight ruminants as a case study and discussthe link between the core microbiome and host physiology and genetics, as well as potential factors that shape it. We conclude with main directives of action to better understand the host–core microbiome axis and acquire the necessary insights into its controlled modulation.
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- 2022
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18. The impact of gossip, reputation, and context on resource transfers among Aka hunter-gatherers, Ngandu horticulturalists, and MTurkers
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Nicole H. Hess and Edward H. Hagen
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Arts and Humanities (miscellaneous) ,Experimental and Cognitive Psychology ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
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19. In need-based sharing, sharing is more important than need
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Aaron Lightner, Anne Pisor, and Edward H Hagen
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Risk ,Need-based sharing ,Pastoralists ,Arts and Humanities (miscellaneous) ,Maasai ,Experimental and Cognitive Psychology ,Evolution of cooperation ,Ecology, Evolution, Behavior and Systematics - Abstract
Cooperative resource sharing is widespread across cultures, and it was likely critical during much of human evolutionary history for pooling risk. Need-based sharing specifically pools risk by following two cooperative rules: help others when asked, and only request help when in need. In a two-part study, we first expanded an agent-based model of need-based sharing partnerships, adding two types of defection and varying partnership sizes. We show that refusing to help always has a long-term cost, which increases with larger partnerships. In contrast, "greedy" requests that are not based on survival risk carry little-to-no cost. We then conducted an experimental vignette study of osotua, a need-based sharing tradition, with Tanzanian Maasai pastoralists. We found that participants generally complied with osotua requests, but shared larger amounts for requests that were based on survival risk. We conclude by proposing an expanded framework for evolutionary models involving need and fitness interdependence, where the cost asymmetry among types of defection generally favors a decision heuristic where individuals prefer sharing with those in need, but err on the side of generosity when need is uncertain.
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- 2023
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20. Religion: the WEIRDest concept in the world?
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Edward H. Hagen, Zachary H. Garfield, and Aaron D. Lightner
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World Wide Web ,Religious studies ,Sociology - Abstract
Henrich (2020) discusses the role of Christianity in shaping Western psychology and affluence. We expand on his perspective by critically discussing Henrich's account of religions. Drawing on cross-cultural research, we clarify when religions are consistent with Henrich's account of religions, and when they reflect pragmatic specialists who assist clients with rare and uncertain problems. We conclude by considering why Western ethnographers might tend to interpret some practical specialist-client relationships as religions, arguing that theories of "religions" might ironically reflect the WEIRD mindset Henrich describes in his book.
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- 2022
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21. Strength is negatively associated with depression and accounts for some of the sex difference
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Caroline B Smith, Tom Rosenström, and Edward H Hagen
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Health, Toxicology and Mutagenesis ,Medicine (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Abstract
Background Depression occurs about twice as often in women as in men, a disparity that remains poorly understood. In a previous publication, Hagen and Rosenström predicted and found that grip strength, a highly sexually dimorphic index of physical formidability, mediated much of the effect of sex on depression. Striking results like this are more likely to be published than null results, potentially biasing the scientific record. It is therefore critical to replicate and extend them. Methodology Using new data from the 2013–14 cycle of the National Health and Nutrition Examination Survey, a nationally representative sample of US households (n = 3650), we replicated models of the effect of sex and grip strength on depression reported in Hagen and Rosenström, along with additional potential confounds and a new detailed symptom-level exploration. Results Overall, the effects from the original paper were reproduced although with smaller effect sizes. Grip strength mediated 38% of the effect of sex on depression, compared to 63% in Hagen and Rosenström. These results were extended with findings that grip strength had a stronger association with some depression symptoms, like suicidality, low interest and low mood than with other symptoms, like appetite changes. Conclusions Grip strength is negatively associated with depression, especially its cognitive–affective symptoms, controlling for numerous possible confounds. Although many factors influence depression, few of these reliably occur cross-culturally in a sex-stratified manner and so are unlikely to explain the well-established, cross-cultural sex difference in depression. The sex difference in upper body strength occurs in all populations and is therefore a candidate evolutionary explanation for some of the sex difference in depression. Lay summary: Why are women at twice the risk of developing depression as men? Depression typically occurs during social conflicts, such as physical or sexual abuse. Physically strong individuals can often single-handedly resolve conflicts in their favor, whereas physically weaker individuals often need help from others. We argue that depression is a credible cry for help. Because men generally have greater strength than women, we argue that men may be more likely to resolve conflicts using physical formidability and women to signal others for help. We find that higher grip strength is associated with lower depression, particularly symptoms like feeling down or thoughts of suicide and that strength accounts for part of the sex difference in rates of depression.
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- 2022
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22. All Models Are Wrong, and Some Are Religious:Supernatural Explanations as Abstract and Useful Falsehoods about Complex Realities
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Aaron D. Lightner and Edward H. Hagen
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Causation ,Sociology and Political Science ,Arts and Humanities (miscellaneous) ,Cognitive science of religion ,Anthropology ,Explanation ,Supernatural beliefs ,Intuitive theories ,Knowledge specialization ,Social Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Abstract
Many cognitive and evolutionary theories of religion argue that supernatural explanations are byproducts of our cognitive adaptations. An influential argument states that our supernatural explanations result from a tendency to generate anthropomorphic explanations, and that this tendency is a byproduct of an error management strategy because agents tend to be associated with especially high fitness costs. We propose instead that anthropomorphic and other supernatural explanations result as features of a broader toolkit of well-designed cognitive adaptations, which are designed for explaining the abstract and causal structure of complex, unobservable, and uncertain phenomena that have substantial impacts on fitness. Specifically, we argue that (1) mental representations about the abstract vs. the supernatural are largely overlapping, if not identical, and (2) when the data-generating processes for scarce and ambiguous observations are complex and opaque, a naive observer can improve a bias-variance trade-off by starting with a simple, underspecified explanation that Western observers readily interpret as “supernatural.” We then argue that (3) in many cases, knowledge specialists across cultures offer pragmatic services that involve apparently supernatural explanations, and their clients are frequently willing to pay them in a market for useful and effective services. We propose that at least some ethnographic descriptions of religion might actually reflect ordinary and adaptive responses to novel problems such as illnesses and natural disasters, where knowledge specialists possess and apply the best available explanations about phenomena that would otherwise be completely mysterious and unpredictable.
- Published
- 2022
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- View/download PDF
23. All Models Are Wrong, and Some Are Religious: Supernatural Explanations as Abstract and Useful Falsehoods about Complex Realities
- Author
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Aaron D, Lightner and Edward H, Hagen
- Abstract
Many cognitive and evolutionary theories of religion argue that supernatural explanations are byproducts of our cognitive adaptations. An influential argument states that our supernatural explanations result from a tendency to generate anthropomorphic explanations, and that this tendency is a byproduct of an error management strategy because agents tend to be associated with especially high fitness costs. We propose instead that anthropomorphic and other supernatural explanations result as features of a broader toolkit of well-designed cognitive adaptations, which are designed for explaining the abstract and causal structure of complex, unobservable, and uncertain phenomena that have substantial impacts on fitness. Specifically, we argue that (1) mental representations about the abstract vs. the supernatural are largely overlapping, if not identical, and (2) when the data-generating processes for scarce and ambiguous observations are complex and opaque, a naive observer can improve a bias-variance trade-off by starting with a simple, underspecified explanation that Western observers readily interpret as "supernatural." We then argue that (3) in many cases, knowledge specialists across cultures offer pragmatic services that involve apparently supernatural explanations, and their clients are frequently willing to pay them in a market for useful and effective services. We propose that at least some ethnographic descriptions of religion might actually reflect ordinary and adaptive responses to novel problems such as illnesses and natural disasters, where knowledge specialists possess and apply the best available explanations about phenomena that would otherwise be completely mysterious and unpredictable.
- Published
- 2022
24. 9Å structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments
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Svetlana O Dodonova, Patrick Aderhold, Juergen Kopp, Iva Ganeva, Simone Röhling, Wim J H Hagen, Irmgard Sinning, Felix Wieland, and John A G Briggs
- Subjects
COPI coat ,coated vesicles ,Arf1 ,ArfGAP ,cryo-electron tomography ,subtomogram averaging ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
COPI coated vesicles mediate trafficking within the Golgi apparatus and between the Golgi and the endoplasmic reticulum. Assembly of a COPI coated vesicle is initiated by the small GTPase Arf1 that recruits the coatomer complex to the membrane, triggering polymerization and budding. The vesicle uncoats before fusion with a target membrane. Coat components are structurally conserved between COPI and clathrin/adaptor proteins. Using cryo-electron tomography and subtomogram averaging, we determined the structure of the COPI coat assembled on membranes in vitro at 9 Å resolution. We also obtained a 2.57 Å resolution crystal structure of βδ-COP. By combining these structures we built a molecular model of the coat. We additionally determined the coat structure in the presence of ArfGAP proteins that regulate coat dissociation. We found that Arf1 occupies contrasting molecular environments within the coat, leading us to hypothesize that some Arf1 molecules may regulate vesicle assembly while others regulate coat disassembly.
- Published
- 2017
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25. Bargaining and interdependence: common parent-offspring conflict resolution strategies among Chon Chuuk and their implications for suicidal behavior
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Kristen Syme and Edward H Hagen
- Abstract
The anthropology of Pacific cultures spotlights social conflict as a key proximate cause of suicide. Ethnographic accounts suggest that suicidal behaviors occupy an extreme end of a spectrum of conflict-resolution strategies. We systematically investigate parent-child conflicts and the strategies adolescent and young adult children use to resolve these conflicts. We use concepts from human behavioral ecology to interpret results from in-depth, semi-structured interviews with 58 Chon Chuuk informants about conflicts with their parents during adolescence and young adulthood. One strategy for resolving conflicts in one’s favor is to impose costs through the threat or use of violence, but an alternative strategy for those who lack social power or formidability involves social withdrawal, or withholding cooperation, until the interdependent parties agree to more favorable terms. The Chuukese term amwunumwun refers to a spectrum of behaviors characterized by withdrawal that includes avoidance, running away, and suicide threats and attempts that can be used by Chon Chuuk youth in conflicts with parents and elder kinsmen. We found that strategies involving withholding cooperation were the most commonly reported child behavioral response. As predicted, low-cost strategies, such as negotiation, were associated with non-severe conflicts (e.g., playing with friends and doing homework), whereas high-cost forms of withholding cooperation, such as running away, were associated with severe conflicts (e.g., abuse and labor exploitation). Importantly, withholding cooperation was often, but not always, successful in resolving outcomes in the child’s favor. We propose that withholding cooperation is a culturally ubiquitous strategy that encompasses a spectrum of behaviors ranging from avoidance to suicidality used by the powerless to achieve favorable outcomes in conflicts with powerful individuals with whom they are interdependent.
- Published
- 2022
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26. Experimental comparison of gaseous and electrochemical hydrogen charging in X65 pipeline steel using the permeation technique
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Erik Koren, Catalina M. H. Hagen, Dong Wang, Xu Lu, Roy Johnsen, and Junichiro Yamabe
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General Chemical Engineering ,General Materials Science ,General Chemistry - Published
- 2023
- Full Text
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27. Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome
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J. A. Frank, M. Ø. Arntzen, L. Sun, L. H. Hagen, A. C. McHardy, S. J. Horn, V. G. H. Eijsink, A. Schnürer, and P. B. Pope
- Subjects
anaerobic digestion ,biogas ,metagenomics ,metaproteomics ,syntrophic acetate oxidation ,Microbiology ,QR1-502 - Abstract
ABSTRACT Biogas reactors operating with protein-rich substrates have high methane potential and industrial value; however, they are highly susceptible to process failure because of the accumulation of ammonia. High ammonia levels cause a decline in acetate-utilizing methanogens and instead promote the conversion of acetate via a two-step mechanism involving syntrophic acetate oxidation (SAO) to H2 and CO2, followed by hydrogenotrophic methanogenesis. Despite the key role of syntrophic acetate-oxidizing bacteria (SAOB), only a few culturable representatives have been characterized. Here we show that the microbiome of a commercial, ammonia-tolerant biogas reactor harbors a deeply branched, uncultured phylotype (unFirm_1) accounting for approximately 5% of the 16S rRNA gene inventory and sharing 88% 16S rRNA gene identity with its closest characterized relative. Reconstructed genome and quantitative metaproteomic analyses imply unFirm_1’s metabolic dominance and SAO capabilities, whereby the key enzymes required for acetate oxidation are among the most highly detected in the reactor microbiome. While culturable SAOB were identified in genomic analyses of the reactor, their limited proteomic representation suggests that unFirm_1 plays an important role in channeling acetate toward methane. Notably, unFirm_1-like populations were found in other high-ammonia biogas installations, conjecturing a broader importance for this novel clade of SAOB in anaerobic fermentations. IMPORTANCE The microbial production of methane or “biogas” is an attractive renewable energy technology that can recycle organic waste into biofuel. Biogas reactors operating with protein-rich substrates such as household municipal or agricultural wastes have significant industrial and societal value; however, they are highly unstable and frequently collapse due to the accumulation of ammonia. We report the discovery of a novel uncultured phylotype (unFirm_1) that is highly detectable in metaproteomic data generated from an ammonia-tolerant commercial reactor. Importantly, unFirm_1 is proposed to perform a key metabolic step in biogas microbiomes, whereby it syntrophically oxidizes acetate to hydrogen and carbon dioxide, which methanogens then covert to methane. Only very few culturable syntrophic acetate-oxidizing bacteria have been described, and all were detected at low in situ levels compared to unFirm_1. Broader comparisons produced the hypothesis that unFirm_1 is a key mediator toward the successful long-term stable operation of biogas production using protein-rich substrates.
- Published
- 2016
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28. Universal and variable leadership dimensions across human societies
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Kristen L. Syme, Zachary H. Garfield, Edward H. Hagen, and Institute for Advanced Study in Toulouse (IAST)
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business.industry ,05 social sciences ,Cultural universal ,Subsistence agriculture ,050109 social psychology ,Experimental and Cognitive Psychology ,Context (language use) ,Public relations ,[SHS.ECO]Humanities and Social Sciences/Economics and Finance ,Problem of universals ,050105 experimental psychology ,Variation (linguistics) ,Arts and Humanities (miscellaneous) ,Capital (economics) ,Ethnography ,0501 psychology and cognitive sciences ,Sociology ,business ,Ecology, Evolution, Behavior and Systematics ,Diversity (business) - Abstract
National audience; Many researchers have turned to evolutionary theory to better understand diversity in leadership. Evolutionary theories of leadership, in turn, draw on ethnographic cases of societies thought to more closely resemble the smaller-scale, face-to-face communities in which humans evolved. Currently, though, there is limited systematic data on the nature of leadership in such societies. We coded 109 dimensions of leadership, including costs and benefits relevant to evolutionary models, in 1212 ethnographic texts from 59 mostly nonindustrial populations in Human Relations Area Files (HRAF). We discovered evidence for both cultural universals in leadership, as well as important variation by continental region, subsistence strategy, group context, and leader sex. Candidate universals included that leaders were intelligent and knowledgeable, resolved conflicts, and received material and social benefits. Evidence for other leader dimensions varied by group context (e.g., there was more evidence that leaders of kin groups were older and tended to provide counsel and direction), subsistence (e.g., hunter-gatherers tended to lack leaders with coercive authority), and sex (e.g., female leaders tended to be associated with family contexts). There was generally more evidence of benefits than costs for both leaders and followers, with material, social, and mating benefits being particularly important for leaders, and material and other benefits important for followers. Shamans emerged as an important category of leaders who did not clearly conform to influential models that emphasize two leader strategies: using knowledge and expertise to provide benefits to followers vs. using physical formidability to impose costs. Instead, shamans and other leaders with supernatural abilities used their knowledge to both provide benefits and impose costs on others. We therefore propose a modified scheme in which leaders deploy their cognitive, social, material, and somatic capital to provide benefits and/or impose costs on others.
- Published
- 2020
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29. In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges
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Sören von Bülow, Michael D. Mühlebach, Andre Schwarz, Sonja Welsch, Nayara Trevisan Doimo de Azevedo, Ger van Zandbergen, Florian Blanc, Shyamal Mosalaganti, Jonathan J M Landry, Katrin Bagola, Martin Beck, Wim J. H. Hagen, Mateusz Sikora, Christoph Schürmann, Cindy Hörner, Roberto Covino, Michael Gecht, Jacomine Krijnse Locker, Gerhard Hummer, and Beata Turoňová
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In situ ,Electron Microscope Tomography ,Glycan ,Glycosylation ,Flexibility (anatomy) ,viruses ,Protein domain ,Pneumonia, Viral ,Hinge ,Molecular Dynamics Simulation ,Biology ,law.invention ,Betacoronavirus ,Protein Domains ,law ,Target identification ,medicine ,Humans ,Pandemics ,Research Articles ,Host cell surface ,Multidisciplinary ,SARS-CoV-2 ,R-Articles ,Cryoelectron Microscopy ,Biochem ,COVID-19 ,Microbio ,Research Highlight ,Cell biology ,medicine.anatomical_structure ,Spike Glycoprotein, Coronavirus ,biology.protein ,Recombinant DNA ,Spike (software development) ,Protein Multimerization ,Structural biology ,Coronavirus Infections ,Research Article - Abstract
Flexible spikes The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein enables viral entry into host cells by binding to the angiotensin-converting enzyme 2 (ACE2) receptor and is a major target for neutralizing antibodies. About 20 to 40 spikes decorate the surface of virions. Turoňová et al. now show that the spike is flexibly connected to the viral surface by three hinges that are well protected by glycosylation sites. The flexibility imparted by these hinges may explain how multiple spikes act in concert to engage onto the flat surface of a host cell. Science, this issue p. 203, Flexible hinges shielded by glycans in the coronavirus spike protein may allow scanning of the host cell surface., The spike protein (S) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is required for cell entry and is the primary focus for vaccine development. In this study, we combined cryo–electron tomography, subtomogram averaging, and molecular dynamics simulations to structurally analyze S in situ. Compared with the recombinant S, the viral S was more heavily glycosylated and occurred mostly in the closed prefusion conformation. We show that the stalk domain of S contains three hinges, giving the head unexpected orientational freedom. We propose that the hinges allow S to scan the host cell surface, shielded from antibodies by an extensive glycan coat. The structure of native S contributes to our understanding of SARS-CoV-2 infection and potentially to the development of safe vaccines.
- Published
- 2020
30. Combining high throughput and high quality for cryo-electron microscopy data collection
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Felix Weis and Wim J. H. Hagen
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Electron Microscope Tomography ,Microscope ,Cryo-electron microscopy ,Computer science ,Macromolecular Substances ,viruses ,High resolution ,cryo-electron microscopy ,macromolecular substances ,environment and public health ,law.invention ,Imaging, Three-Dimensional ,Structural Biology ,law ,Microscopy ,Image Processing, Computer-Assisted ,Throughput (business) ,Data collection ,business.industry ,Data Collection ,Cryoelectron Microscopy ,diagnosis ,fringe-free imaging ,High-Throughput Screening Assays ,Macromolecular Complexes ,high-end data collection ,coma-free imaging ,Tomography ,business ,Ccp-EM ,Computer hardware ,Software - Abstract
Methods for obtaining the maximum out of a cryo-EM data-collection session are described., Cryo-electron microscopy (cryo-EM) can be used to elucidate the 3D structure of macromolecular complexes. Driven by technological breakthroughs in electron-microscope and electron-detector development, coupled with improved image-processing procedures, it is now possible to reach high resolution both in single-particle analysis and in cryo-electron tomography and subtomogram-averaging approaches. As a consequence, the way in which cryo-EM data are collected has changed and new challenges have arisen in terms of microscope alignment, aberration correction and imaging parameters. This review describes how high-end data collection is performed at the EMBL Heidelberg cryo-EM platform, presenting recent microscope implementations that allow an increase in throughput while maintaining aberration-free imaging and the optimization of acquisition parameters to collect high-resolution data.
- Published
- 2020
31. Structural basis for RNA polymerase III transcription repression by Maf1
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Christoph W. Müller, Wim J. H. Hagen, Rene Wetzel, Robyn D. Moir, Matthias K. Vorländer, Florence Baudin, and Ian M. Willis
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Models, Molecular ,Protein Conformation, alpha-Helical ,RNA polymerase III ,Saccharomyces cerevisiae Proteins ,Transcription, Genetic ,viruses ,Genetic Vectors ,Gene Expression ,Sequence alignment ,Plasma protein binding ,Saccharomyces cerevisiae ,Winged Helix ,Article ,03 medical and health sciences ,0302 clinical medicine ,Structural Biology ,Transcription (biology) ,Transcription Factor TFIIIB ,Gene expression ,Escherichia coli ,Humans ,Protein Interaction Domains and Motifs ,Amino Acid Sequence ,Binding site ,Cloning, Molecular ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Binding Sites ,Sequence Homology, Amino Acid ,Chemistry ,Cryoelectron Microscopy ,Recombinant Proteins ,Cell biology ,transcription repression ,Repressor Proteins ,Protein Subunits ,Transcription preinitiation complex ,Protein Conformation, beta-Strand ,electron cryo-microscopy ,Pol III ,Sequence Alignment ,030217 neurology & neurosurgery ,Maf1 ,Protein Binding ,Transcription Factors - Abstract
Maf1 is a conserved inhibitor of RNA polymerase III (Pol III) that influences phenotypes ranging from metabolic efficiency to lifespan. Here, we present a 3.3-A-resolution cryo-EM structure of yeast Maf1 bound to Pol III, establishing that Maf1 sequesters Pol III elements involved in transcription initiation and binds the mobile C34 winged helix 2 domain, sealing off the active site. The Maf1 binding site overlaps with that of TFIIIB in the preinitiation complex. A 3.3-A-resolution cryo-EM structure of yeast Maf1 bound to RNA polymerase III (Pol III) explains the molecular mechanism for Pol III inhibition.
- Published
- 2020
32. Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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Matthew P. Ostrowski, Sabina Leanti La Rosa, Benoit J. Kunath, Andrew Robertson, Gabriel Pereira, Live H. Hagen, Neha J. Varghese, Ling Qiu, Tianming Yao, Gabrielle Flint, James Li, Sean P. McDonald, Duna Buttner, Nicholas A. Pudlo, Matthew K. Schnizlein, Vincent B. Young, Harry Brumer, Thomas M. Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce Hamaker, Emiley A. Eloe-Fadrosh, Ashootosh Tripathi, Phillip B. Pope, Eric C. Martens, Norwegian University of Life Sciences (NMBU), Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg [Luxembourg], US Department of Energy Joint Genome Institute, Walnut Creek CA, USA, DOE Joint Genome Institute [Walnut Creek], Department of Microbiology and Immunology, University of Michigan Medical School, University of Michigan [Ann Arbor], University of Michigan System-University of Michigan System, University of British Columbia (UBC), Paul Scherrer Institute (PSI), Architecture et fonction des macromolécules biologiques (AFMB), and Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
- Subjects
Dietary Fiber ,Microbiology (medical) ,MESH: Humans ,[SDV]Life Sciences [q-bio] ,Polysaccharides, Bacterial ,Immunology ,MESH: Food Additives ,Cell Biology ,Applied Microbiology and Biotechnology ,Microbiology ,MESH: Gastrointestinal Microbiome ,Gastrointestinal Microbiome ,Mice ,MESH: Dietary Fiber ,Genetics ,Animals ,Humans ,Food Additives ,MESH: Animals ,MESH: Polysaccharides, Bacterial ,MESH: Mice - Abstract
International audience; Processed foods often include food additives such as xanthan gum, a complex polysaccharide with unique rheological properties, that has established widespread use as a stabilizer and thickening agent. Xanthan gum's chemical structure is distinct from those of host and dietary polysaccharides that are more commonly expected to transit the gastrointestinal tract, and little is known about its direct interaction with the gut microbiota, which plays a central role in digestion of other dietary fibre polysaccharides. Here we show that the ability to digest xanthan gum is common in human gut microbiomes from industrialized countries and appears contingent on a single uncultured bacterium in the family Ruminococcaceae. Our data reveal that this primary degrader cleaves the xanthan gum backbone before processing the released oligosaccharides using additional enzymes. Some individuals harbour Bacteroides intestinalis that is incapable of consuming polymeric xanthan gum but grows on oligosaccharide products generated by the Ruminococcaceae. Feeding xanthan gum to germfree mice colonized with a human microbiota containing the uncultured Ruminococcaceae supports the idea that the additive xanthan gum can drive expansion of the primary degrader Ruminococcaceae, along with exogenously introduced B. intestinalis. Our work demonstrates the existence of a potential xanthan gum food chain involving at least two members of different phyla of gut bacteria and provides an initial framework for understanding how widespread consumption of a recently introduced food additive influences human microbiomes.
- Published
- 2022
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33. Law Enforcement of Working Space Requirements in Office Buildings - The Policy of the Labour Inspectorate in the Netherlands.
- Author
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Rob H. Hagen
- Published
- 1998
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34. Norflex: accommodating e-mobility in the distribution grid. Utilising a flexibility market to manage grid congestion
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G. M. Abusdal, H. Hagen, J. Pedersen, and S. Kazemi
- Published
- 2022
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35. Homo medicus: The transition to meat eating, increased pathogen pressure, and the constitutive and inducible use of pharmacological plants in Homo
- Author
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Edward H Hagen, Aaron D Blackwell, Aaron Lightner, and Roger Sullivan
- Abstract
The human lineage entered a more carnivorous niche 2.6 mya. A range of evidence indicates this increased zoonotic pathogen pressure. This evidence includes increased zoonotic infections modern hunter-gatherers and bushmeat hunters relative to others living in the same environments, exceptionally low stomach pH compared to other primates, human-specific downregulation in ANTXR2 that would have protected against increased exposure to zoonotic anthrax, exceptional human immune responses to LPS compared to other primates, and other divergent immune genes. These all point to change, and likely intensification, in the disease environment of Homo compared to earlier hominins and other apes. At the same time, the brain, an organ in which inflammatory immune responses are highly constrained, begins to increase, eventually tripling in size. We propose that the combination of increased zoonotic pathogen pressure and the challenges of defending a large brain and body from pathogens across what would eventually become the longest lifespan of any mammal, selected for intensification of the self-medication strategies already in place in apes and other primates, resulting in a variety of plant-based pathogen defenses. In support, there is evidence of medicinal plant use by hominins in the middle Paleolithic, and all cultures today have sophisticated, plant-based medical systems, incorporate plant components high in secondary compounds (spices) into food, and regularly consume psychoactive substances that are harmful to helminths and other pathogens in the CNS and other tissues. The computational challenges of discovering effective plant-based treatments, and the economic challenges of benefiting from costly-to- acquire medical knowledge that would be more often useful to others than oneself, were selection pressures for increased cognitive abilities and unique exchange relationships in Homo. In the story of human evolution, which has long featured hunters, shamans and healers had an equal role to play.
- Published
- 2021
- Full Text
- View/download PDF
36. Ethnomedical Specialists and their Supernatural Theories of Disease
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Edward H. Hagen, Cynthiann Heckelsmiller, and Aaron D. Lightner
- Subjects
Philosophy of science ,Magic (illusion) ,Maasai ,Experimental and Cognitive Psychology ,Interpersonal communication ,Cognitive reframing ,Mental illness ,medicine.disease ,Religious identity ,language.human_language ,Epistemology ,Philosophy ,language ,medicine ,Psychology ,Traditional society - Abstract
Religious healing specialists such as shamans often use magic. Evolutionary theories that seek to explain why laypersons find these specialists convincing focus on the origins of magical cognition and belief in the supernatural. In two studies, we reframe the problem by investigating relationships among ethnomedical specialists, who possess extensive theories of disease that can often appear “supernatural,” and religious healing specialists. In study 1, we coded and analyzed cross-cultural descriptions of ethnomedical specialists in 47 cultures, finding 24% were also religious leaders and 74% used supernatural theories of disease. We identified correlates of the use of supernatural concepts among ethnomedical specialists; incentives and disincentives to patronize ethnomedical specialists; and distinct clusters of ethnomedical specialists that we label prestigious teachers, feared diviners, and efficacious healers. In study 2, we interviewed 84 Maasai pastoralists and their traditional religious and non-religious healing specialists. We found that laypersons relied on medicinal services based on combinations of efficacy, religious identity, and interpersonal trust. Further, laypersons and specialists largely used abstract concepts that were not conspicuously supernatural to describe how local medicines work. We conclude that religious healers in traditional societies often fulfill a practical and specialized service to local clients, and argue that supernatural theories of disease often reflect abstract cognition about rare phenomena whose causes are unobservable (e.g., infection, mental illness) instead of a separate “religious” style of thinking.
- Published
- 2021
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37. Artificial intelligence reveals nuclear pore complexity
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Beata Turonova, Martin Beck, Florian Schmidt, Marc Siggel, Katarzyna Buczak, Agnieszka Obarska-Kosinska, Shyamal Mosalaganti, Gerhard Hummer, Christian E. Zimmerli, Wim J. H. Hagen, Erica Margiotta, Jan Kosinski, and Marie-Therese Mackmull
- Subjects
Molecular dynamics ,Scaffold ,Structural biology ,Chemistry ,Nucleocytoplasmic Transport ,Biophysics ,Nuclear pore ,Linker ,Outer Nuclear Membrane - Abstract
Nuclear pore complexes (NPCs) mediate nucleocytoplasmic transport. Their intricate 120 MDa architecture remains incompletely understood. Here, we report a near-complete structural model of the human NPC scaffold with explicit membrane and in multiple conformational states. We combined AI-based structure prediction with in situ and in cellulo cryo-electron tomography and integrative modeling. We show that linker Nups spatially organize the scaffold within and across subcomplexes to establish the higher-order structure. Microsecond-long molecular dynamics simulations suggest that the scaffold is not required to stabilize the inner and outer nuclear membrane fusion, but rather widens the central pore. Our work exemplifies how AI-based modeling can be integrated with in situ structural biology to understand subcellular architecture across spatial organization levels.One sentence summaryAn AI-based, dynamic model of the human nuclear pore complex reveals how the protein scaffold and the nuclear envelope are coupled inside cells.
- Published
- 2021
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38. Competitive gossip: the impact of domain, resource value, resource scarcity and coalitions
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Edward H. Hagen and Nicole H. Hess
- Subjects
Value (ethics) ,Communication ,media_common.quotation_subject ,Information Theory ,Articles ,Environmental economics ,General Biochemistry, Genetics and Molecular Biology ,Social Networking ,Domain (software engineering) ,Competition (economics) ,Resource (project management) ,Resource scarcity ,Gossip ,Business ,Social Behavior ,General Agricultural and Biological Sciences ,Language ,Reputation ,media_common - Abstract
Those with better reputations often obtain more resources than those with poorer reputations. Consequently, gossip might be an evolved strategy to compete for valuable and scarce material and social resources. Influenced by models of non-human primate competition, we test the hypotheses that gossip: (i) targets aspects of reputation relevant to the domain in which the competition is occurring, (ii) increases when contested resources are more valuable, and (iii) increases when resources are scarcer. We then test hypotheses derived from informational warfare theory, which proposes that coalitions strategically collect, analyse and disseminate gossip. Specifically, we test whether: (iv) coalitions deter negative gossip, and (v) whether they increase expectations of reputational harm to competitors. Using experimental methods in a Mechanical Turk sample ( n = 600), and survey and ego network analysis methods in a sample of California sorority women ( n = 74), we found that gossip content is specific to the context of the competition; that more valuable and scarcer resources cause gossip, particularly negative gossip, to intensify; and that allies deter negative gossip and increase expectations of reputational harm to an adversary. These results support social competition theories of gossip. This article is part of the theme issue ‘The language of cooperation: reputation and honest signalling’.
- Published
- 2021
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39. In Memoriam
- Author
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Lawrence S. Sugiyama and Edward H. Hagen
- Subjects
History ,Sociology and Political Science ,Arts and Humanities (miscellaneous) ,Anthropology ,Social Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Published
- 2020
- Full Text
- View/download PDF
40. Evolutionary Models of Leadership
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Zachary H. Garfield, Robert L. Hubbard, and Edward H. Hagen
- Subjects
Operationalization ,Sociology and Political Science ,Culture ,Decision Making ,05 social sciences ,Behavioural sciences ,050109 social psychology ,Models, Psychological ,Collective action ,Evolutionary psychology ,050105 experimental psychology ,Leadership ,Arts and Humanities (miscellaneous) ,Anthropology ,Capital (economics) ,Humans ,Social Capital ,Sanctions ,Leadership style ,0501 psychology and cognitive sciences ,Psychology ,Social psychology ,Social Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics ,Social influence - Abstract
This study tested four theoretical models of leadership with data from the ethnographic record. The first was a game-theoretical model of leadership in collective actions, in which followers prefer and reward a leader who monitors and sanctions free-riders as group size increases. The second was the dominance model, in which dominant leaders threaten followers with physical or social harm. The third, the prestige model, suggests leaders with valued skills and expertise are chosen by followers who strive to emulate them. The fourth proposes that in small-scale, kin-based societies, men with high neural capital are best able to achieve and maintain positions of social influence (e.g., as headmen) and thereby often become polygynous and have more offspring than other men, which positively selects for greater neural capital. Using multiple search strategies we identified more than 1000 texts relevant to leadership in the Probability Sample of 60 cultures from the Human Relations Area Files (HRAF). We operationalized the model with variables and then coded all retrieved text records on the presence or absence of evidence for each of these 24 variables. We found mixed support for the collective action model, broad support for components of the prestige leadership style and the importance of neural capital and polygyny among leaders, but more limited support for the dominance leadership style. We found little evidence, however, of emulation of, or prestige-biased learning toward, leaders. We found that improving collective actions, having expertise, providing counsel, and being respected, having high neural capital, and being polygynous are common properties of leaders, which warrants a synthesis of the collective action, prestige, and neural capital and reproductive skew models. We sketch one such synthesis involving high-quality decision-making and other computational services.
- Published
- 2019
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41. The evolutionary anthropology of political leadership
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Edward H. Hagen, Zachary H. Garfield, and Christopher von Rueden
- Subjects
0303 health sciences ,Organizational Behavior and Human Resource Management ,060101 anthropology ,Primatology ,Sociology and Political Science ,Ecology (disciplines) ,06 humanities and the arts ,Evolutionary psychology ,Epistemology ,03 medical and health sciences ,Evolutionary anthropology ,Leadership studies ,Followership ,Cross-cultural ,0601 history and archaeology ,Sociology ,Business and International Management ,Human behavioral ecology ,Applied Psychology ,030304 developmental biology - Abstract
Existing approaches within leadership studies often share a bias towards industrialized societies and lack broader cross-cultural and ethological reference. Meanwhile, cross-cultural and evolutionary approaches within anthropology are actively working to unify research on leadership and followership across the biological and social sciences. This review provides a novel and thorough view of political leadership as investigated by evolutionary anthropologists and highlights the benefits of incorporating findings from the evolutionary social sciences into leadership studies generally. We introduce the anthropological approach to leadership; describe evolutionary anthropology, its subdisciplines (including primatology, paleoanthropology, paleogenetics, human behavioral ecology, and gene-culture coevolution), and its complementary disciplines (particularly evolutionary psychology); review leadership and hierarchy in nonhumans, including our extinct hominid ancestors; review female leadership and sex-differences; and, primarily, discuss the relationships between evolution, ecology, and culture as they relate to the observed patterns of political leadership and followership across human societies. Through evolutionary anthropology's diverse toolkit, a deeper insight into the evolution and cross-cultural patterning of leadership is realized.
- Published
- 2019
- Full Text
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42. Integrative Structural Analysis of Human Nuclear Pore Complex
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Shyamal Mosalaganti, Agnieszka Obarska-Kosinska, Marc Siggel, Reiya Taniguchi, Beata Turoňová, Christian E Zimmerli, Katarzyna Buczak, Florian H Schmidt, Erica Margiotta, Marie-Therese Mackmull, Wim J H Hagen, Gerhard Hummer, Jan Kosinski, and Martin Beck
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Instrumentation - Published
- 2022
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43. Strength is negatively associated with depression and accounts for some of the sex difference: A replication and extension
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Caroline B, Smith, Tom, Rosenström, and Edward H, Hagen
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Depression occurs about twice as often in women as in men, a disparity that remains poorly understood. In a previous publication, Hagen and Rosenström predicted and found that grip strength, a highly sexually dimorphic index of physical formidability, mediated much of the effect of sex on depression. Striking results like this are more likely to be published than null results, potentially biasing the scientific record. It is therefore critical to replicate and extend them.Using new data from the 2013-14 cycle of the National Health and Nutrition Examination Survey, a nationally representative sample of US households (Overall, the effects from the original paper were reproduced although with smaller effect sizes. Grip strength mediated 38% of the effect of sex on depression, compared to 63% in Hagen and Rosenström. These results were extended with findings that grip strength had a stronger association with some depression symptoms, like suicidality, low interest and low mood than with other symptoms, like appetite changes.Grip strength is negatively associated with depression, especially its cognitive-affective symptoms, controlling for numerous possible confounds. Although many factors influence depression, few of these reliably occur cross-culturally in a sex-stratified manner and so are unlikely to explain the well-established, cross-cultural sex difference in depression. The sex difference in upper body strength occurs in all populations and is therefore a candidate evolutionary explanation for some of the sex difference in depression.
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- 2021
44. Toward a productive evolutionary understanding of music
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Samuel A Mehr, Max Krasnow, Gregory A. Bryant, and Edward H Hagen
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We discuss approaches to the study of the evolution of music (sect. R1); challenges to each of the two theories of the origins of music presented in the companion Target Articles (sect. R2); future directions for testing them (sect. R3); and priorities for better understanding the nature of music (sect. R4). [in press, Behavioral and Brain Sciences]
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- 2021
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45. The Food Additive Xanthan Gum Drives Adaptation of the Human Gut Microbiota
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Matthew P. Ostrowski, Sabina Leanti La Rosa, Benoit J. Kunath, Andrew Robertson, Gabriel Pereira, Live H. Hagen, Neha J. Varghese, Ling Qiu, Tianming Yao, Gabrielle Flint, James Li, Sean McDonald, Duna Buttner, Nicholas A. Pudlo, Matthew K. Schnizlein, Vincent B. Young, Harry Brumer, Thomas Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce Hamaker, Emiley A Eloe-Fadrosh, Ashootosh Tripathi, Phillip B. Pope, and Eric Martens
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SummaryThe diets of industrialized countries reflect the increasing use of processed foods, often with the introduction of novel food additives. Xanthan gum is a complex polysaccharide with unique rheological properties that have established its use as a widespread stabilizer and thickening agent1. However, little is known about its direct interaction with the gut microbiota, which plays a central role in digestion of other, chemically-distinct dietary fiber polysaccharides. Here, we show that the ability to digest xanthan gum is surprisingly common in industrialized human gut microbiomes and appears to be contingent on the activity of a single bacterium that is a member of an uncultured bacterial genus in the family Ruminococcaceae. We used a combination of enrichment culture, multi-omics, and recombinant enzyme studies to identify and characterize a complete pathway in this uncultured bacterium for the degradation of xanthan gum. Our data reveal that this keystone degrader cleaves the xanthan gum backbone with a novel glycoside hydrolase family 5 (GH5) enzyme before processing the released oligosaccharides using additional enzymes. Surprisingly, some individuals harbor a Bacteroides species that is capable of consuming oligosaccharide products generated by the keystone Ruminococcaceae or a purified form of the GH5 enzyme. This Bacteroides symbiont is equipped with its own distinct enzymatic pathway to cross-feed on xanthan gum breakdown products, which still harbor the native linkage complexity in xanthan gum, but it cannot directly degrade the high molecular weight polymer. Thus, the introduction of a common food additive into the human diet in the past 50 years has promoted the establishment of a food chain involving at least two members of different phyla of gut bacteria.
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- 2021
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46. Chapter 18 Heavenly Agent and Divine Disclosure: The Holy Cross at Borre
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Kaja M. H. Hagen
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- 2021
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47. Strategies for Optimization of Cryogenic Electron Tomography Data Acquisition
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Simone Mattei, Wim J. H. Hagen, Martin Schorb, and Felix Weis
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Electron Microscope Tomography ,Data collection ,General Immunology and Microbiology ,business.industry ,Computer science ,Macromolecular Substances ,SARS-CoV-2 ,Pipeline (computing) ,General Chemical Engineering ,General Neuroscience ,Real-time computing ,Cryoelectron Microscopy ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Reproducibility of Results ,Context (language use) ,Grid ,General Biochemistry, Genetics and Molecular Biology ,Data acquisition ,Software ,Electron tomography ,Image Processing, Computer-Assisted ,business ,Throughput (business) - Abstract
Cryogenic electron tomography (cryoET) is a powerful method to study the 3D structure of biological samples in a close-to-native state. Current state-of-the-art cryoET combined with subtomogram averaging analysis enables the high-resolution structural determination of macromolecular complexes that are present in multiple copies within tomographic reconstructions. Tomographic experiments usually require a vast amount of tilt series to be acquired by means of high-end transmission electron microscopes with important operational running-costs. Although the throughput and reliability of automated data acquisition routines have constantly improved over the recent years, the process of selecting regions of interest at which a tilt series will be acquired cannot be easily automated and it still relies on the user's manual input. Therefore, the set-up of a large-scale data collection session is a time-consuming procedure that can considerably reduce the remaining microscope time available for tilt series acquisition. Here, the protocol describes the recently developed implementations based on the SerialEM package and the PyEM software that significantly improve the time-efficiency of grid screening and large-scale tilt series data collection. The presented protocol illustrates how to use SerialEM scripting functionalities to fully automate grid mapping, grid square mapping, and tilt series acquisition. Furthermore, the protocol describes how to use PyEM to select additional acquisition targets in off-line mode after automated data collection is initiated. To illustrate this protocol, its application in the context of high-end data collection of Sars-Cov-2 tilt series is described. The presented pipeline is particularly suited to maximizing the time-efficiency of tomography experiments that require a careful selection of acquisition targets and at the same time a large amount of tilt series to be collected.
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- 2021
48. Effect of Eight-Week Online Cognitive Training in Parkinson’s Disease: A Randomized Controlled Trial
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Tanja Berk, Odile A. van den Heuvel, Jos W. R. Twisk, Rob H. Hagen, Carel F.W. Peeters, Tim D. van Balkom, Henk W. Berendse, Chris Vriend, and Ysbrand D. van der Werf
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medicine.medical_specialty ,education.field_of_study ,business.industry ,Population ,Neuropsychology ,Cognition ,medicine.disease ,Cognitive training ,law.invention ,Randomized controlled trial ,law ,Statistical significance ,Physical therapy ,medicine ,Dementia ,Cognitive decline ,business ,education - Abstract
BackgroundCognitive training (CT) has been proposed as a non-pharmacological treatment option for the frequent cognitive impairments occurring in PD.ObjectiveAssess the efficacy of CT on cognitive function in PD.MethodsIn this double-blind, randomized controlled trial we enrolled 140 PD patients with significant subjective cognitive complaints. In eight weeks, participants underwent 24 sessions of computerized multi-domain CT or an active control condition for 45 minutes each (n=70 vs. n=70). The primary outcome was the accuracy on a computerized Tower of London task; secondary outcomes included effects on other neuropsychological outcomes and subjective cognitive complaints. Outcomes were assessed before and after training and at six-months follow-up, and were analyzed with multivariate mixed-model analyses.ResultsThe intention-to-treat population consisted of 136 participants. Multivariate mixed-model analyses showed no group difference on the Tower of London accuracy corrected for baseline performance: B: −0.06, 95% CI: −0.27 to 0.15, p=0.562. Participants in the CT group were on average 0.30 SD (i.e., 1.5 seconds) faster on the Tower of London, difficulty load 4 (secondary outcome): 95% CI: −0.55 to −0.06, p=0.015. CT had similar positive effects on other processing speed-related executive function tasks, although these did not reach statistical significance. At follow-up, no group differences were present.ConclusionsThe results show tentative but consistent positive effects of CT on processing speed during executive functioning. Future studies should investigate booster sessions to increase durability, optimize training duration, and study different sub-groups of PD patients along the continuum of cognitive decline towards PD dementia.
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- 2021
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49. Ischemic Burden Reduction and Long-Term Clinical Outcomes After Chronic Total Occlusion Percutaneous Coronary Intervention
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Pieter G. Raijmakers, Marly Kockx, Roel S. Driessen, Bram S. H. Hagen, Pepijn A. van Diemen, Wijnand J. Stuijfzand, Stefan P. Schumacher, Alexander Nap, Henk Everaars, Maksymilian P. Opolski, Michiel J. Bom, Ruben W. de Winter, Peter M. van de Ven, Albert C. van Rossum, Lara Kamperman, Paul Knaapen, Cardiology, ACS - Atherosclerosis & ischemic syndromes, Radiology and nuclear medicine, AMS - Tissue Function & Regeneration, ACS - Heart failure & arrhythmias, and APH - Methodology
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medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Ischemia ,Myocardial Infarction ,Percutaneous coronary intervention ,Perfusion scanning ,medicine.disease ,Coronary Angiography ,Angina ,Percutaneous Coronary Intervention ,Treatment Outcome ,Coronary Occlusion ,Interquartile range ,Risk Factors ,Internal medicine ,Conventional PCI ,Chronic Disease ,Cardiology ,Medicine ,Humans ,Myocardial infarction ,Cardiology and Cardiovascular Medicine ,business ,Perfusion - Abstract
Objectives: The authors sought to evaluate the impact of ischemic burden reduction after chronic total occlusion (CTO) percutaneous coronary intervention (PCI) on long-term prognosis and cardiac symptom relief. Background: The clinical benefit of CTO PCI is questioned. Methods: In a high-volume CTO PCI center, 212 patients prospectively underwent quantitative [ 15O]H 2O positron emission tomography perfusion imaging before and three months after successful CTO PCI between 2013-2019. Perfusion defects (PD) (in segments) and hyperemic myocardial blood flow (hMBF) (in ml · min −1 · g −1) allocated to CTO areas were related to prognostic outcomes using unadjusted (Kaplan-Meier curves, log-rank test) and risk-adjusted (multivariable Cox regression) analyses. The prognostic endpoint was a composite of all-cause death and nonfatal myocardial infarction. Results: After a median [interquartile range] of 2.8 years [1.8 to 4.3 years], event-free survival was superior in patients with ≥3 versus −1 · g −1) versus below the population median (p < 0.01; risk-adjusted p < 0.01; HR: 0.16 [95% CI: 0.05 to 0.54]) after CTO PCI. Furthermore, event-free survival was superior in patients without versus any residual PD (p < 0.01; risk-adjusted p = 0.02; HR: 0.22 [95% CI: 0.06 to 0.76]) or with a residual hMBF level >2.3 versus ≤2.3 ml · min −1 · g −1 (p < 0.01; risk-adjusted p = 0.03; HR: 0.25 [95% CI: 0.07 to 0.91]) at follow-up positron emission tomography. Patients with residual hMBF >2.3 ml · min −1 · g −1 were more frequently free of angina and dyspnea on exertion at long-term follow-up (p = 0.04). Conclusions: Patients with extensive ischemic burden reduction and no residual ischemia after CTO PCI had lower rates of all-cause death and nonfatal myocardial infarction. Long-term cardiac symptom relief was associated with normalization of hMBF levels after CTO PCI.
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- 2021
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50. SNAPSHOT USA 2019: a coordinated national camera trap survey of the United States
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Jerrold L. Belant, Seth C. Crockett, William J. McShea, Adam Zorn, Robert A. Long, Çağan H. Şekercioğlu, Kelly Anne MacCombie, Helen I. Rowe, Jaquelyn Tleimat, Adrienne Dykstra, Kelsey A. Barnick, Tiffany A. Sprague, Connor Cincotta, Andrew J. Edelman, Marcus A. Lashley, Anthony P. Crupi, Steven Hammerich, Jennifer Sevin, Carolina Baruzzi, Jesse M. Alston, Elizabeth A. Flaherty, Christopher P. Hansen, Damon B. Lesmeister, Sean T. Giery, Caroline N. Ellison, Andrea K. Darracq, George R. Hess, Brian J. O'Neill, Matthew E. Gompper, Christopher M. Schalk, Amelia M. Bergquist, Ronald S. Revord, Brian D. Gerber, Arielle W. Parsons, Chelsey Tellez, Travis W. Knowles, Daniel G. Scognamillo, Christopher Nagy, Jan Schipper, Morgan Gray, Maximilian L. Allen, Gary W. Roemer, Tavis Forrester, Aaron N. Facka, Miranda L. Davis, Alexej P. K. Sirén, Brett A. DeGregorio, Colin E. Studds, Monica Lasky, Melissa T. R. Hawkins, La Roy S.E. Brandt, Thomas E. Lee, Sean M. King, Mark A. Linnell, Jinelle H. Sperry, John F. Benson, Katherine C. B. Weiss, Joshua J. Millspaugh, Fabiola Iannarilli, Bryn Evans, Christopher A. Lepczyk, David Mason, Mark J. Jordan, Jarred M. Brooke, Cara L. Appel, Katherine E. Andy, Jennifer L. Stenglein, Dean E. Beyer, Tru Hubbard, Marketa Zimova, Alexandra J. Bebko, Daniel J. Herrera, Cristian J. Hernandez, Petros Chrysafis, Summer D. Higdon, Caleb Durbin, Sophie L. Nasrallah, Roland Kays, Scott D. LaPoint, Kathryn R. Remine, Brandon T. Barton, Chip Ruthven, Robert C. Lonsinger, Noel Schmitz, Jorie Favreau, Stephen L. Webb, Edward Trout, Mary E. Pendergast, Brenna Wells, Christine Anhalt-Depies, Robert Horan, Christopher A. Whittier, Todd K. Fuller, M. Teague O'Mara, Hila Shamon, Jean E. Fantle-Lepczyk, Rachel M. Cliché, Sean P. Maher, Stephanie S. Coster, Joshua Sands, Kellie M. Kuhn, Helen Bontrager, Christopher T. Rota, Jaylin N. Solberg, Sarah R. Fritts, John P. Vanek, Laura S. Whipple, Erika L. Barthelmess, Alessio Mortelliti, Kodi Jo Jaspers, Daniel Davis, Renee Klann, Erin K. Kuprewicz, Melinda Fowler, Christine C. Rega-Brodsky, Haydée Hernández-Yáñez, Robert Pelletier, Daniel A. Bogan, M. Caitlin Fisher-Reid, Weston C. Thompson, Chris Sutherland, Claire Bresnan, Todd M. Kautz, Nathaniel H. Wehr, Neil H. Carter, Sharyn B. Marks, Carrie Nelson, Jessica C. Burr, Richard G. Lathrop, Austin M. Green, Robert H. Hagen, Andrea Romero, Michael S. Rentz, Matthew S. Leslie, Katarina Russell, Michael V. Cove, David S. Jachowski, Paige S. Warren, Sean A. Neiswenter, Nyeema C. Harris, Jillian R. Kilborn, Taylor Frerichs, Marius van der Merwe, Jennifer Y. Zhao, Darren A. Clark, Derek R. Risch, Jacque Williamson, Diana J. R. Lafferty, Michelle Halbur, Joanne R. Wasdin, Melissa R. Price, Justin A. Compton, Alex J. Jensen, University of St Andrews. Statistics, Cove, M. V., Kays, R., Bontrager, H., Bresnan, C., Lasky, M., Frerichs, T., Klann, R., Lee, T. E., Crockett, S. C., Crupi, A. P., Weiss, K. C. B., Rowe, H., Sprague, T., Schipper, J., Tellez, C., Lepczyk, C. A., Fantle-Lepczyk, J. E., Lapoint, S., Williamson, J., Fisher-Reid, M. C., King, S. M., Bebko, A. J., Chrysafis, P., Jensen, A. J., Jachowski, D. S., Sands, J., Maccombie, K. A., Herrera, D. J., van der Merwe, M., Knowles, T. W., Horan, R. V., Rentz, M. S., Brandt, L. S. E., Nagy, C., Barton, B. T., Thompson, W. C., Maher, S. P., Darracq, A. K., Hess, G., Parsons, A. W., Wells, B., Roemer, G. W., Hernandez, C. J., Gompper, M. E., Webb, S. L., Vanek, J. P., Lafferty, D. J. R., Bergquist, A. M., Hubbard, T., Forrester, T., Clark, D., Cincotta, C., Favreau, J., Facka, A. N., Halbur, M., Hammerich, S., Gray, M., Rega-Brodsky, C. C., Durbin, C., Flaherty, E. A., Brooke, J. M., Coster, S. S., Lathrop, R. G., Russell, K., Bogan, D. A., Cliche, R., Shamon, H., Hawkins, M. T. R., Marks, S. B., Lonsinger, R. C., O'Mara, M. T., Compton, J. A., Fowler, M., Barthelmess, E. L., Andy, K. E., Belant, J. L., Beyer, D. E., Kautz, T. M., Scognamillo, D. G., Schalk, C. M., Leslie, M. S., Nasrallah, S. L., Ellison, C. N., Ruthven, C., Fritts, S., Tleimat, J., Gay, M., Whittier, C. A., Neiswenter, S. A., Pelletier, R., Degregorio, B. A., Kuprewicz, E. K., Davis, M. L., Dykstra, A., Mason, D. S., Baruzzi, C., Lashley, M. A., Risch, D. R., Price, M. R., Allen, M. L., Whipple, L. S., Sperry, J. H., Hagen, R. H., Mortelliti, A., Evans, B. E., Studds, C. E., Siren, A. P. K., Kilborn, J., Sutherland, C., Warren, P., Fuller, T., Harris, N. C., Carter, N. H., Trout, E., Zimova, M., Giery, S. T., Iannarilli, F., Higdon, S. D., Revord, R. S., Hansen, C. P., Millspaugh, J. J., Zorn, A., Benson, J. F., Wehr, N. H., Solberg, J. N., Gerber, B. D., Burr, J. C., Sevin, J., Green, A. M., Sekercioglu, C. H., Pendergast, M., Barnick, K. A., Edelman, A. J., Wasdin, J. R., Romero, A., O'Neill, B. J., Schmitz, N., Alston, J. M., Kuhn, K. M., Lesmeister, D. B., Linnell, M. A., Appel, C. L., Rota, C., Stenglein, J. L., Anhalt-Depies, C., Nelson, C., Long, R. A., Jo Jaspers, K., Remine, K. R., Jordan, M. J., Davis, D., Hernandez-Yanez, H., Zhao, J. Y., and Mcshea, W. J.
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0106 biological sciences ,Cingulata ,QH301 Biology ,Carnivora ,Population Dynamics ,Biodiversity ,mammal ,Information repository ,01 natural sciences ,QA ,biodiversity ,Mammals ,education.field_of_study ,camera trap ,Ecology ,Camera traps ,Environmental resource management ,Species distribution modeling ,Geography ,Biogeography ,carnivora ,Extinction debt ,United State ,Cetartiodactyla ,Didelphimorphia ,Lagomorpha ,Rodentia ,biogeography ,camera traps ,mammals ,occupancy modeling ,species distribution modeling ,Animals ,Birds ,United States ,Animals, Wild ,Occupancy modeling ,Population ,Wildlife ,Wild ,010603 evolutionary biology ,Snapshot (photography) ,QH301 ,Bird ,QA Mathematics ,education ,Ecology, Evolution, Behavior and Systematics ,Population Dynamic ,Animal ,business.industry ,010604 marine biology & hydrobiology ,DAS ,Camera trap ,Survey data collection ,business - Abstract
This article is protected by copyright. All rights reserved. With the accelerating pace of global change, it is imperative that we obtain rapid inventories of the status and distribution of wildlife for ecological inferences and conservation planning. To address this challenge, we launched the SNAPSHOT USA project, a collaborative survey of terrestrial wildlife populations using camera traps across the United States. For our first annual survey, we compiled data across all 50 states during a 14-week period (17 August - 24 November of 2019). We sampled wildlife at 1509 camera trap sites from 110 camera trap arrays covering 12 different ecoregions across four development zones. This effort resulted in 166,036 unique detections of 83 species of mammals and 17 species of birds. All images were processed through the Smithsonian's eMammal camera trap data repository and included an expert review phase to ensure taxonomic accuracy of data, resulting in each picture being reviewed at least twice. The results represent a timely and standardized camera trap survey of the USA. All of the 2019 survey data are made available herein. We are currently repeating surveys in fall 2020, opening up the opportunity to other institutions and cooperators to expand coverage of all the urban-wild gradients and ecophysiographic regions of the country. Future data will be available as the database is updated at eMammal.si.edu/snapshot-usa, as well as future data paper submissions. These data will be useful for local and macroecological research including the examination of community assembly, effects of environmental and anthropogenic landscape variables, effects of fragmentation and extinction debt dynamics, as well as species-specific population dynamics and conservation action plans. There are no copyright restrictions; please cite this paper when using the data for publication. Publisher PDF
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- 2021
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