Background: In the PEGASUS trial, the complement C3 inhibitor, pegcetacoplan, showed superiority to eculizumab in improving haematological outcomes in adult patients with paroxysmal nocturnal haemoglobinuria and suboptimal response to eculizumab at 16 weeks. The aim of the open-label period was to evaluate the long-term efficacy and safety of pegcetacoplan through to 48 weeks., Methods: PEGASUS was a phase 3, randomised, open-label, active-comparator controlled trial conducted in 44 centres in Australia, Belgium, Canada, France, Germany, Japan, Russia, South Korea, Spain, the UK, and the USA. Eligible participants were aged 18 years or older, had paroxysmal nocturnal haemoglobinuria, and had a haemoglobin concentration of less than 10·50 g/dL after 3 months or longer of stable eculizumab treatment. After a 4-week run-in with eculizumab plus pegcetacoplan, patients were randomly assigned (1:1) by interactive response technology to pegcetacoplan (1080 mg subcutaneously twice weekly) or eculizumab (according to their regimen at enrolment) for 16 weeks and could continue to the open-label period (32 weeks of pegcetacoplan monotherapy [pegcetacoplan-to-pegcetacoplan] or 28 weeks of pegcetacoplan monotherapy [eculizumab-to-pegcetacoplan]). Randomisation was stratified by platelet count and number of previous blood transfusions. The primary endpoint was change from baseline in haemoglobin at week 16, which has previously been reported. The outcomes of the open-label period (week 16 to week 48) are reported here. At 48 weeks, efficacy (including mean haemoglobin concentration and quality of life measured on the Functional Assessment of Chronic Illness Therapy [FACIT]-Fatigue scale) was assessed in the intention-to-treat population and safety was assessed per protocol. This trial was registered with ClinicalTrials.gov, NCT03500549, and has been completed., Findings: Between June 14, 2018, and Nov 14, 2019, 80 patients were randomly assigned to receive treatment with pegcetacoplan (41 patients) or eculizumab (39 patients). Most participants were women (49 [61%]) and 31 (39%) were men; 12 (15%) were Asian, two (3%) were Black, 49 (61%) were White, and 17 (21%) were another race or did not report their race. The open-label period had 77 participants (38 pegcetacoplan-to-pegcetacoplan, 39 eculizumab-to-pegcetacoplan). Patients in the pegcetacoplan-to-pegcetacoplan group maintained high mean haemoglobin concentrations between 16 weeks (11·54 g/dL [SD 1·96]) and 48 weeks (11·30 g/dL [1·77]; p=0·14). Patients in the eculizumab-to-pegcetacoplan group had significantly greater mean haemoglobin concentrations at 48 weeks (11·57 g/dL [2·21]) versus 16 weeks (8·58 g/dL [0·96]; p<0·0001). Clinically meaningful improvements in FACIT-Fatigue scores were observed at 48 weeks, with a mean change from baseline for all patients receiving pegcetacoplan monotherapy of 9·89 points (SD 9·63), for patients in the pegcetacoplan-to-pegcetacoplan group mean 10·14 points (9·06), and for patients in the eculizumab-to-pegcetacoplan group mean 9·62 points (10·34). During the entire study period, 13 (16%) of 80 patients discontinued treatment (three [7%] of 41 through to week 16 due to breakthrough haemolysis, and ten [13%] of 77 due to severe treatment-emergent adverse events) and 18 patients (eight pegcetacoplan-to-pegcetacoplan, ten eculizumab-to-pegcetacoplan) had at least one serious treatment-emergent adverse event during the open-label period, four were considered to be related to pegcetacoplan treatment. The most common treatment-emergent adverse events (in ≥10% patients) among both pegcetacoplan-treated groups during the open-label period were injection site reactions (in 20 [26%] of 77 patients), haemolysis (15 [19%]), nasopharyngitis (12 [16%]), and diarrhoea (ten [13%]). No treatment-related deaths occurred throughout the duration of the study., Interpretation: The durability of improved haematological outcomes and favourable safety profile over 48 weeks of treatment suggests that pegcetacoplan has the potential to improve treatment benefit and alter treatment goals in patients with paroxysmal nocturnal haemoglobinuria., Funding: Apellis Pharmaceuticals., Competing Interests: Declaration of interests RPdL reports consultancy at Novartis, Pfizer, Amgen, Alexion Pharmaceuticals, Apellis Pharmaceuticals, and Swedish Orphan Biovitrum; honoraria from Novartis, Pfizer, Amgen, Alexion Pharmaceuticals, Apellis Pharmaceuticals, and Swedish Orphan Biovitrum; research funding from Novartis, Pfizer, Amgen, and Alexion Pharmaceuticals; and grants from Alexion Pharmaceuticals, Amgen, Novartis, and Pfizer. JS reports consultancy at Novartis, Alexion Pharmaceuticals, and Apellis Pharmaceuticals; honoraria from Takeda, Pfizer, Novartis, Prevail Therapeutics, and Alexion Pharmaceuticals; speakers’ bureau at Takeda, Pfizer, Novartis, and Alexion Pharmaceuticals; and membership on an entity's board of directors or advisory committees at Prevail Therapeutics and Alexion Pharmaceuticals. ICW reports consultancy at Alexion Pharmaceuticals, Apellis Pharmaceuticals, Biocryst, Novartis, and Sanofi Genxyme; honoraria from Alexion Pharmaceuticals, Apellis Pharmaceuticals, Biocryst, Novartis, and Sanofi Genxyme; and speakers’ bureau at Alexion Pharmaceuticals. AR reports personal fees from Alexion Pharmaceuticals, Apellis Pharmaceuticals, Kira, Novartis, Roche, Swedish Orphan Biovitrum, Sanofi, Bioverativ, and Grifols; and grants from Roche. BH reports honoraria and advisory board member at Novartis, Roche, Alexion Pharmaceuticals, and Apellis Pharmaceuticals. JP reports consultancy and honoraria at Blueprint Medicines, Amgen, F Hoffmann-La Roche, MSD, Bristol Myers Squibb, Alexion Pharmaceuticals, Novartis, Pfizer, Gilead, Boehringer Ingelheim, Swedish Orphan Biovitrum, and Apellis Pharmaceuticals; and honoraria from SwixxBiopharma. KU reports grants from Alexion Pharmaceuticals, Apellis Pharmaceuticals, Chugai, and Novartis; and personal fees from Novartis, Chugai, and Alexion Pharmaceuticals. MG reports consultancy at Biocryst and Regeneron Pharmaceuticals; honoraria from Alexion Pharmaceuticals and Swedish Orphan Biovitrum; advisory board member at Novartis, Biocryst, Alexion Pharmaceuticals, and Swedish Orphan Biovitrum; and educational work sponsored by Apellis with unrestricted grant paid to Medscape. J-JK reports membership on an entity's board of directors or advisory committees at AbbVie, Novartis, Bristol Myers Squibb, and AOP Orphan. CMdC reports consultancy at Apellis Pharmaceuticals; honoraria from Novartis, Alexion Pharmaceuticals, Biocryst, and Apellis Pharmaceuticals; and research funding from Alexion Pharmaceuticals, and Apellis Pharmaceuticals. TA reports current employment and current equity holder at Apellis Pharmaceuticals. MA-A reports current employment at Apellis Pharmaceuticals. PD reports being a founder, Chief Scientific Officer, and current equity holder at Apellis Pharmaceuticals. CF and FG report current employment and current equity holder at Apellis Pharmaceuticals. AMR reports consultancy at Novartis and Amyndas; membership on an entity's board of directors or advisory committees at Novartis, Alexion Pharmaceuticals, Samsung, Biocryst, Achillion, Roche, Sanofi, and Apellis Pharmaceuticals; and grants from Alexion Pharmaceuticals, Novartis, Alnylam, and Rapharma. PH reports consultancy at Alexion Pharmaceuticals, Apellis Pharmaceuticals, AbbVie, AstraZeneca, Janssen, and Roche; research funding from Alexion Pharmaceuticals, Apellis Pharmaceuticals, AbbVie, Gilead, Janssen, Pharmacyclics, and Roche; and speakers bureau at Alexion Pharmaceuticals, Apellis Pharmaceuticals, AbbVie, AstraZeneca, Janssen, and Roche. HN declares no competing interests., (Copyright © 2022 Elsevier Ltd. All rights reserved.)