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Abstract Geographic variation in the vocal behavior of manatees has been reported but is largely unexplored. Vocalizations of wild West Indian manatees (Trichechus manatus) were recorded with hydrophones in Florida from Florida manatees (Trichechus manatus latirostris), and in Belize and Panama from Antillean manatees (Trichechus manatus manatus) to determine if calls varied between subspecies and geographic regions. Calls were visually classified into five categories: squeaks, high squeaks, squeals, squeak-squeals, and chirps. From these five categories, only three call types (squeaks, high squeaks and squeals) were observed in all three populations. Six parameters from the temporal and frequency domains were measured from the fundamental frequency of 2878 manatee vocalizations. A repeated measures PERMANOVA found significant differences for squeaks and high squeaks between each geographic location and for squeals between Belize and Florida. Almost all measured frequency and temporal parameters of manatee vocalizations differed between and within subspecies. Variables that may have influenced the variation observed may be related to sex, body size, habitat and/or other factors. Our findings provide critical information of manatee calls for wildlife monitoring and highlight the need for further study of the vocal behavior of manatees throughout their range.

Warming events in the Pacific Ocean are becoming more frequent, intense, and on a larger temporal and spatial scale. This has caused critical habitats of marine species to lose their quality and marine organisms respond by modifying their critical feeding and reproduction behaviors, as well as their distribution. The Northeast Pacific humpback whale of the Central America distinct population segment (DPS) remains Endangered due to its small population size and because its response to climate change and human interventions is unknown. In this work, we showed the encounter rates of humpback whales in their breeding grounds in Costa Rica for breeding seasons comprised in the period 2000-2020. We analyze the influence of climatic indices that influence the Pacific and environmental variables related to temperature and productivity in the feeding grounds of this population (United States). We hypothesize that the more intense the warming events, the fewer humpback whales complete their migration to Costa Rica. We conclude that the humpback whales of this population could be finding thermally favorable areas in intermediate latitudes (p. e.g., Mexican-Guatemala coasts), which could be related to the decreases in the presence of humpback whale adults and calves in Costa Rica. These observed changes could inform how humpback whales might respond to climate change.

The whale shark (Rhincodon typus) is an endangered and highly migratory species, of which solitary individuals or aggregations are observed in oceans worldwide and for which conservation efforts are hindered by a lack of comprehensive data on genetic population connectivity. Tissue samples were collected from wandering whale sharks in Pacific Panama to determine genetic diversity, phylogeographic origin, and possible global and local connectivity patterns using a 700–800 bp fragment of the mitochondrial control region gene. Genetic diversity among samples was high, with five new haplotypes and nine polymorphic sites identified among the 15 sequences. Haplotype diversity (Hd = 0.83) and nucleotide diversity (π = 0.00516) were similar to those reported in other studies. Our sequences, in particular haplotypes PTY1 and PTY2, were similar to those previously reported in the Arabian Gulf and the Western Indian Ocean populations (a novel occurrence in the latter case). Haplotypes PTY3, PTY4, and PTY5 were similar to populations in Mexico and the Gulf of California. In contrast, the only populations to which our Panamanian sequences were genetically dissimilar were those from the Atlantic Ocean. The absence of reference sequences in GenBank from southern sites in the Eastern Tropical Pacific, such as Galapagos (Ecuador), Gorgona and Malpelo Islands (Colombia), and Coco Island (Costa Rica), reduced our capacity to genetically define regional patterns. Genetic differentiation and connectivity were also assessed using an analysis of molecular variance (AMOVA), which showed a similar population structure (five groups) to the neighbor-joining tree. Other population features based on neutrality tests, such as Tajima’s D and Fu’s Fs statistics, showed positive values for Panama of 0.79 and 1.61, respectively. Positive values of these statistics indicate a lack of evidence for population expansion among the sampled individuals. Our results agree with previous reports suggesting that whale sharks can travel over long distances and that transboundary conservation measures may be effective for species protection.

Eastern gray whales undertake annual migrations between summer feeding grounds in the Bering and Chukchi Seas and winter breeding and calving lagoons in the west coast of Baja California, Mexico. On February 12, 2017, three adult gray whales were sighted at San José del Cabo, Mexico, in which one individual, named “María,” was tagged using a satellite telemetry transmitter (PTT). The PTT stopped the signal on July 11, 2017. María traveled 11,387 km during 149 days from San José del Cabo to the Chirikov Basin. The migration route was aligned close to the coastline (70 km) into the Bering Sea, including the Chirikov Basin. During March, April, and May, María traveled long distances at relatively high speeds, in contrast to the lower speed during February, early March, and the arrival time to the feeding areas in May, June, and July. The total distance traveled by María during its migration from Ojo de Liebre Lagoon to the Chirikov Basin was 8,863 km during 61.5 days with an average speed of 5.5 km h–1; this excludes the 14 days and 591 km that María spent feeding on the coast of Kodiak Island in late April. The information provided by this tagged whale documents a single whales’ migration, which is consistent with previous studies and constitutes the most complete northbound reported migration of an eastern gray whale.

We evaluated the potential of using convolutional neural networks in classifying spectrograms of Antillean manatee (Trichechus manatus manatus) vocalizations. Spectrograms using binary, linear and logarithmic amplitude formats were considered. Two deep convolutional neural networks (DCNN) architectures were tested: linear (fixed filter size) and pyramidal (incremental filter size). Six experiments were devised for testing the accuracy obtained for each spectrogram representation and architecture combination. Results show that binary spectrograms with both linear and pyramidal architectures with dropout provide a classification rate of 94–99% on the training and 92–98% on the testing set, respectively. The pyramidal network presents a shorter training and inference time. Results from the convolutional neural networks (CNN) are substantially better when compared with a signal processing fast Fourier transform (FFT)-based harmonic search approach in terms of accuracy and F1 Score. Taken together, these results prove the validity of using spectrograms and using DCNNs for manatee vocalization classification. These results can be used to improve future software and hardware implementations for the estimation of the manatee population in Panama.

Gorgonian octocorals are considered a prolific source of secondary metabolites with a wide range of biological activities, including anti-inflammatory activity. In particular, the genus Briareum is known for producing a wealth of diterpenes with complex chemical structures. The chemical study of the methanolic extract of Briareum asbestinum collected in Bocas del Toro, on the Caribbean side of Panama, led to the isolation of three new eunicellin-type diterpenes: briarellin T (1), asbestinin 27 (2), asbestinin 28 (3) and the previously described asbestinin 17 (4). The structures of the new compounds were determined by extensive NMR analyses and HRMS. Anti-inflammatory activity assays showed a significant reduction of the pro-inflammatory cytokines TNF-α, IL-6, IL-1β and IL-8 as well as a downregulation of COX-2 expression in LPS-stimulated THP-1 macrophages. These findings support the potential use of these marine compounds as therapeutic agents in the treatment of inflammatory diseases.

The Caribbean Coastal Marine Productivity Program (CARICOMP) was launched in 1993 to study regional long-term interactions between land and sea, taking standardized measurements of productivity and biomass of mangroves, coral reefs and seagrasses. Since 1999 continuous measurements of seagrass (Thalassia testudinum) parameters as well as environmental data have been recorded in Caribbean Panama. Replicate stations were selected near the Smithsonian Tropical Research Institute in Bocas del Toro. Sediment cores and quadrants were placed there to estimate biomass and productivity, respectively. Mean values for productivity, standing crop, turnover rate, total dry biomass, and Leaf Area Index were 1.74gDW/m²/d, 66.6gDW/m², 2.62%/d, 1 481 gDW/m², and 4.65, respectively. Total dry biomass (shoots, rhizomes and roots) and LAI of T. testudinum increased significantly during the study period. Mean values for total rainfall, Secchi disk depth, sea surface temperature, and salinity were 3 498mm, 8.24m, 28.79°C, and 32.26psu, respectively. Sea surface temperature was the only environmental variable with a statistically significant change, increasing from 1999 to 2010. Correlation between sea surface temperature and T. testudinum parameters (total biomass and LAI) were both positive and significant. Human population has increased dramatically over the last ten years in Bocas del Toro region, increasing pressure (deforestation, runoff, wastewater) over coastal ecosystems (seagrasses, mangroves, coral reefs). Change in the abundance of T. testudinum may be linked to ocean warming, as a consequence to satisfy plant’s metabolic requirements, although other local factors need to be analyzed (reduced grazing and increased eutrophication). A further warming of the ocean could have a negative effect on T. testudinum population, increasing respiratory demands and microbial metabolism.

Gorgonians are important components of coastal ecosystems, as they provide niches, natural compounds with medical applications and are used as bioindicators. Species composition and assemblage structure of gorgonians (Anthozoa: Octocorallia) were studied along a bathymetric profile in the Southern Mexican Pacific coast. Species composition was based on specimens collected within a depth range of 0-70m in 15 sites. The relative abundance of species was determined in six sites at four depths (5, 10, 20 and 25m) using three 10m2 transects at each depth level. Twenty-seven species of gorgonians belonging to six genera and three families were registered. The species composition varied with depth: 11 species were distributed between 0-25m depth, while 17 species were found between 40-70m depth interval. The shallow zone is characterized by a relatively large abundance of gorgonians, dominated by colonies of Leptogorgia cuspidata and L. ena. In contrast, the deepest zone was characterized by relatively low abundance of gorgonians, dominated by L. alba, the only species observed in both depth intervals. The similarity analysis showed differences in the composition and abundance of species by depth and site, suggesting that the main factor in determining the assemblage structure is depth. Results of this study suggest that the highest richness of gorgonian species in the study area may be located at depths of 40-70m, whereas the highest abundances are found between 5 and 10m depth. This study represents a contribution to the poorly known eastern Pacific gorgonian biota.

Two new eunicellin-based diterpenes, seco-briarellinone (1) and briarellin S (2), and a known seco-asbestinin (3) have been isolated from the methanolic extract of the common octocoral Briareum asbestinum collected in Bocas del Toro, Caribbean of Panama. The structures and relative stereochemistry of the compounds were defined using extensive spectroscopic analysis including 1D, 2D-nuclear magnetic resonance (NMR) and high-resolution mass spectrometry (HRMS). Compounds 1 and 2 displayed anti-inflammatory properties inhibiting nitric oxide (NO) production induced by lipopolisacharide (LPS) in macrophages with an Inhibitory concentration 50% (IC50) of 4.7 μM and 20.3 μM, respectively. This is the first report of briarellin diterpenes containing a ketone group at C-12.

Fractionation of the ethyl acetate extract of the marine bacterium Bacillus pumilus isolated from the black coral Antipathes sp. led to the isolation of five compounds: cyclo-(L-Leu-L-Pro) (1), 3-hydroxyacetylindole (2), N-acetyl-b-oxotryptamine (3), cyclo-(L-Phe-L-Pro) (4), and 3-formylindole (5). The structures of compounds 1−5 were established by spectroscopic analyses, including HRESITOF-MS and NMR (1H, 13C, HSQC, HMBC and COSY). Compounds 2, 3 and 5 caused the inhibition on the growth of Trypanosoma cruzi (T. cruzi), with IC50 values of 20.6, 19.4 and 26.9 μM, respectively, with moderate cytotoxicity against Vero cells. Compounds 1−5 were found to be inactive when tested against Plasmodium falciparum and Leishmania donovani, therefore showing selectivity against T. cruzi parasites.

Chemical examination of the octocoral-associated Bacillus species (sp.) DT001 led to the isolation of pumilacidins A (1) and C (2). We investigated the effect of these compounds on the viability of Plasmodium falciparum and the mechanism of pumilacidin-induced death. The use of inhibitors of protein kinase C (PKC) and phosphoinositide 3-kinase (PI3K) was able to prevent the effects of pumilacidins A and C. The results indicated also that pumilacidins inhibit parasite growth via mitochondrial dysfunction and decreased cytosolic Ca2+.

Este estudio, cuarto y último donde se describen los arrecifes coralinos de Bocas del Toro y su estado de conservación en forma individual, contempla a 14 arrecifes continentales en 129 km de costa comprendidos entre la Península Valiente y el Río Calovébora. Se encontró una cobertura de coral vivo promedio para esta región de 17.1% (" 3.6%), principalmente en el sector occidental de la península, en particular la zona interna de Bahía Bluefield, y en el sector de Tobobe. La cobertura de coral aumenta con la profundidad ( 5 m) en la mayoría de los arrecifes. Dos especies de coral, Porites furcata y Acropora palmata, dominan las aguas superficiales. El coral Acropora palmata se encontró abundante en seis de los 14 arrecifes estudiados concentrándose su mayor presencia hacia el sector de la Ensenada Tobobe y Punta Valiente. Los patrones de reclutamiento son similares en distribución a los de mayor cobertura, presentándose densidades promedios de 4 reclutas/m² (hasta 9 reclutas/m²) principalmente Agaricia spp., Porites astreoides y Siderastrea siderea. La mayor diversidad de corales y esponjas se registró hacia el sector occidental de Península Valiente encontrandose 55 especies de corales en el área de estudio, incluyendo dos nuevos registros para Bocas del Toro (59 especies en total); Dichocoenia stellaris y Madracis luciphila, incrementando también la diversidad de corales de Panamá a 65 especies. Se encontraron 24 especies de octocorales, informándose por primera vez tres especies: Gorgonia mariae, Muriceopsis sulphurea y Muricea laxa, aumentando así en un 10% la diversidad de Bocas del Toro a 32 especies en total. Se registraron cinco nuevas especies de esponjas, lo que representa un incremento del 9% en el número de especies que hacen un total de 58 para Bocas del Toro. La diversidad total de esponjas en el área de estudio fue de 48 especies. Se encontraron grandes poblaciones de Acropora palmata en la Ensenada de Tobobe lo que justifica, una vez más, la necesidad de modificar el área protegida actual de forma que se incorpore dentro de los planes de conservación este nuevo sector.This is the fourth and last contribution describing the individual structure, distribution and conservation status of coral reefs in the Province of Bocas del Toro. Here we describe 14 new reefs along 129 km of coast from Peninsula Valiente to Río Calovébora. Average live coral coverage for this region was 17.1% (" 3.6%), mainly in the western region of the peninsula (Bahia Bluefield and Ensenada Tobobe). Coral cover increases with depth ( 5 m) for most species at several reefs and the corals Porites furcata and Acropora palmata dominated shallow waters. Acropora palmata was found abundant in 43% of the studied reefs and toward the regions of the Ensenada Tobobe and Punta Valiente. Coral recruitment rates were similar in distribution to those reefs with greater coral coverage, with average densities of 4 recruit/m² (maximum 9 recruits/m²) and mainly Agaricia spp., Porites astreoides and Siderastrea siderea. The greater diversity of corals and sponges was recorded toward the western side of the peninsula, with a total of 55 coral species in the study area, including two new records for Bocas del Toro (59 species in total), Dichocoenia stellaris and Madracis luciphila and increasing the diversity of corals of Panama to 65 species. We found 24 species of octocorals and Gorgonia mariae, Muriceopsis sulphurea and Muricea laxaoosens, are informed for the first time to the area, increasing in 10% the diversity for Bocas del Toro (32 in total). We recorded 48 sponges, including five new species for the area and representing an increase of 9% in the total number (58). Large populations of Acropora palmata were found in the Ensenada Tobobe, what justifies once again the need for modifying the existing protected area, so that this new region is incorporated within the conservation plans.

Se presenta la distribución de arrecifes coralinos a lo largo de la costa de las islas de Bastimentos, Solarte, Carenero y Colón (ca. 120 km), Provincia de Bocas del Toro, Panamá. Se describe la estructura de 18 arrecifes coralinos, los cuales representan la diversidad de hábitats y condiciones hidrológicas y orográficas de la zona costera del archipiélago. Los arrecifes encontrados en hábitats a barlovento de las islas (expuestos), son menos diversos en corales y presentan una cobertura de coral vivo baja (8%), mientras que los arrecifes de hábitats protegidos (sotavento), son los de mayor diversidad y cobertura de corales (32%). Las macroalgas presentaron un patrón similar de cobertura con promedio de 50%, alta si se le compara con arrecifes descritos para la Ensenada Grande de Almirante (4%), al sur del archipiélago. Se registra un aumento del 35% en el número de especies de corales para Bocas del Toro; el total de especies conocidas para la región es de 54, lo cual representa el 88% del total de la diversidad para Panamá. Se encontró que los arrecifes del Parque Nacional Marino Isla Bastimentos no representan la variedad de hábitats, diversidad de especies y abundancia que están presentes en otras localidades fuera de los límites del área protegida. Se señalan recomendaciones para el manejo integral de los recursos naturales marinos y terrestres del archipiélago de Bocas del Toro, donde se proponen variantes a los límites existentes del área protegida y la creación de nuevas categorías de protección (reservas biológicas), entre otros.The distribution and conservation status of coral reefs along the northern section of the archipelago of Bocas del Toro are evaluated (ca. 120 km), and the structure of 18 reefs around the islands of Bastimentos, Solarte, Carenero and Colón is described. Reef habitats located on the seaward side (exposed) of the islands exhibited the lowest coral cover (8%) and coral diversity, while leeward reefs (protected) showed the highest living coral cover (32%) and diversity. Macroalgae coverage was similar in both habitats but high (50%) if compared with other continental reefs described in the Ensenada Grande of Almirante Bay (4%). A total of 54 coral species was recorded, representing a 35% increase from previous studies for the region and 88% of the total species described for Panama. The diversity of reefs, reef organisms and habitats in the archipelago was greater outside the national park of Isla Bastimentos, the only marine protected area in western Panama. Some recommendations are provided for an integrated management of marine-terrestrial natural resources in the region, in particular, a complete change on the existing limits of the protected area and the creation of new reserves.

Se presenta la distribución de azrecifes coralinos a lo lar-go de la costa continental (tierra firrne) de la Bahía Almirante (ca. 83km) y de la Laguna de Chiñquí (ca 125km), Pro­vincia de Bocas del Toro, Panarná Se describe la estructura de 15 arrecifes coralinos, los cuales representan la diversidad de condiciones hidrológicas y orográficas de la zona costera con mayor inítuencia terrígena de Bocas del Toro. Los arrecifes encontrados en la Bahía Almirante se encuentran bien desarrollados hasta una profundidad máxima de 23 m y una diversidad de corales madrepóricos de 33 especies, locual representa aproximadamente un 53 % de la diversidad conocida para Panamá. las coberturas de coral vivo observadas para la región de estudio oscilan entre 20 % y 50 % depediendo de la profundidady se estima un promedio total de 35 % casi el doble de la cobertura informada para otras regiones de Panamá (San Blas) donde se presume que los arrecifes estan mejor protegidos. La zonación y composición de especies de corales son similares en toda el área de estudio; Porites furcata domina los arrecifes someros hasta 2 m de profundidad, con una cobertura de ca. 90% seguida por una zona dominada por Agaricia tenuifolia, (40%) hasta los 6 m. seguido de una zona principalmente compuesta de A. tenuifolia (15%) Madracis mirabilis (7%) y Siderastrea siderea (50%) hasta los 15 m de profundidad, terminando en una zona profundad dominada por algas rojas calcareas Amphiroa rigida, Hydrolithon boergesenii, Sporolithon episporum y el coral S. siderea. El coral Agaricia undata, común en habitats profundos se encontró relativamente abundante (3%) y creciendo después de los 10 m. Se informa por primera vez para la región la existencia de una barrera coralina construida por Porites furcata, semi-continua de ca. 22 km de largo y que bordea la zona costera de la Bahía Almirante. El grupo de las esponjas, segundo en importancia, está ampliamente distribuido en todos los arrecifes con uns diversidad de 31 especcies y cobertura promedio de 6%. Curiosamente, se encontro un solo arrecife de los estudiados con cobertura de macroalgas inferiores al 4%. Solamente se encontró un arrecife coralino dentro de la Laguna de Chiriquí, con desarrollo limitado hasta 3 m de profundidad, una diversidad de corales no mayor a 7 especies y cobertura de coral de 24% (Porites furcata). La costa de la Laguna Chiriquí está afectada por descargas continuas de sedimentos provenientes de varios ríos, principalmente Cricamola, Manantí, Uyama, Guarumo y Cauchero, cuyas plumas de agua dulce y sedimentos se extienden mucchos kilómetros desde sus desembocaduras, limitado el asentamiento y desarrollo de comunidades coralinas. La distribución vertical y dominancia de ciertas especies de corales en los arrecifes aquí descritos (e.g. Siderastrea siderea, Porites furcata, Agaricia tenuifolia, Madracis decactis, y M. mirabilis) indican que estas comunidades se formaron adaptándose gradualmente a condiciones variables de calidad de agua (salinidad, temperatura y penetración de la luz) relativamente no óptimas para un desarrollo arrecifal más diversos y de aguas más profundas. Esto sugiere que estas especies pesar de ser bastante resistentes a cambios ambientales, viven actualmernte muy cercanas a sus límites de tolerancia ecofisiológica, lo cual las hace particularmente vulnerables a cambios puntuados. Cuaquier proyecto de desarrollo no planificado incrementará la sedimentación hacia la zona costera debilitando alos organismos arrecifales en su totalidad, afectándose así la funcionalidad del ecosistema.The distribution of continental reefs is presented along 83 km of shore within Babia Almirante and 125 km within the ChIriquí Lagoon, Bocas del Toro, Panamá. Reef community structure (diversity, cover, zonation) is described on 15 coral reefs for both regions, representing tlie diversity of hydrologicat and orographical condiiions affecting the coastal zone. The coral reefs found in Bahía Almirante are well developed down to a maximum depth of 23 m, and a diversity of hard corais of 33 species, which represents approximately a 53% of the total diversity known for Panamá. Coral cover observed for the studied region ranged between 20% and 50% depending on the depth, and a total average of 35% is estimated, nearly twice the cover informed for other regions of Panamá (San Blas), where it is presumed that the reefs are better protected from human disturbances. Vertical distribution and composition of species are similar across the area; Porites furcata dominates shallow reefs down to 2 m depth, with a cover estimated at 90%, followed by a zone dominated by Agaricía tenuifolia (40%) down to 6 m depth, followed by a zone composed mainly of A. tenuifolia (15%), Madracis mirabilis (7%), and Siderastrea siderea (5%) down to 15 rn deep, .and finishing in a deeper zone dorninated by coralline algae and the coral S. siderea. The existence of a semi-continuous Porites furcata fringing reef of ca. 22 km in length, borders the entire coastal zone of Ensenada Grande de Almirante, is informed for the first tirne for the region. Sponges, second sessile organisms in importance, are widely distributed in all reefs with a diversity of 31 species and average cover of 6%. Curiously, the highest algae coverage was found in one reef (10%) while the remaining reefs presented an average cover of 4%. Only one coral reef was found in the Chiriquí Lagoon with development limited to 3 m, a diversity of corals no higher than 7 species, and coral cover of 24% (Porites furcata). The coast of the Chiriquí Lagoon is affected by continuous sediment discharges coming from various rivers, mailnly the Cricamola, Manantí, Uyama, Guarumo, and Cauchero, whose plumes of freshwater and silt extend for many kilometers, limiting the distribution and development of coral reef communities. The vertical distribution, composition, and dominance of certain coral species in the reefs described here (e.g., Siderastrea siderea, Porites furcata, Agaricia tenuifolia, Madracis decactis, and M. mirabilis) indicate that these communities were formed adapting gradually to unfavorable conditions in water quality (lower salinity, low light penetration) which has limited a more vigorous reef development, and perhaps more diverse community. These species, in spite of heing quite resistant lo environmental changes and building healthy reefs in waters of low clarity, presently live near tbeir limits of ecophysiological tolerance, which makes them particularly vulnerable to puncluated changes in the environment. It is expected that any unplanned development project in the region rnight increase sedimentation toward the coastal zone, which could weaken all reef organisms, affecting ecosystem function.

Three new diterpenes, uprolide N (1), uprolide O (2), uprolide P (3) and a known one, dolabellane (4), were isolated from the CH2Cl2-MeOH extract of the gorgonian octocoral Eunicea succinea, collected from Bocas del Toro, on the Caribbean coast of Panama. Their structures were determined using spectroscopic analyses, including 1D and 2D NMR and high-resolution mass spectrometry (HRMS) together with molecular modeling studies. Compounds 1–3 displayed anti-inflammatory properties by inhibiting production of Tumor Necrosis Factor (TNF) and Interleukin (IL)-6 induced by lipopolysaccharide (LPS) in murine macrophages.

IntroductionThis work presents an unsupervised learning-based methodology to identify and count unique manatees using underwater vocalization recordings.MethodsThe proposed approach uses Scattering Wavelet Transform (SWT) to represent individual manatee vocalizations. A Manifold Learning approach, known as PacMAP, is employed for dimensionality reduction. A density-based algorithm, known as Hierarchical Density-Based Spatial Clustering of Applications with Noise (HDBSCAN), is used to count and identify clusters of individual manatee vocalizations. The proposed methodology is compared with a previous method developed by our group, based on classical clustering methods (K-Means and Hierarchical clustering) using Short-Time Fourier Transform (STFT)-based spectrograms for representing vocalizations. The performance of both approaches is contrasted by using a novel vocalization data set consisting of 23 temporally captured Greater Caribbean manatees from San San River, Bocas del Toro, in western Panama as input.ResultsThe proposed methodology reaches a mean percentage of error of the number of individuals (i.e., number of clusters) estimation of 14.05% and success of correctly grouping a manatee in a cluster of 83.75%.DiscussionThus having a better performances than our previous analysis methodology, for the same data set. The value of this work lies in providing a way to estimate the manatee population while only relying on underwater bioacoustics.

The Galapagos Marine Reserve is vital for cetaceans, serving as both a stopover and residency site. However, blue whales, occasionally sighted here, exhibit poorly understood migratory behavior within the Galapagos and the broader Eastern Tropical Pacific. This study, the first to satellite tag blue whales in the Galapagos (16 tagged between 2021 and 2023), explored their behavior in relation to environmental variables like chlorophyll-a concentration, sea surface temperature (SST), and productivity. Key findings show a strong correlation between foraging behavior, high chlorophyll-a levels, productivity, and lower SSTs, indicating a preference for food-rich areas. Additionally, there is a notable association with geomorphic features like ridges, which potentially enhance food abundance. Most tagged whales stayed near the Galapagos archipelago, with higher concentrations observed around Isabela Island, which is increasingly frequented by tourist vessels, posing heightened ship strike risks. Some whales ventured into Ecuador’s exclusive economic zone, while one migrated southward to Peru. The strong 2023 El Niño–Southern Oscillation event led to SST and primary production changes, likely impacting whale resource availability. Our study provides crucial insights into blue whale habitat utilization, informing adaptive management strategies to mitigate ship strike risks and address altered migration routes due to climate-driven environmental shifts.

Coral species, which function to build the framework structure of reef ecosystems, vary across sheltered to exposed environmental gradients. For centuries, conditions in sheltered environments that impact lagoonal reefs have been altered by local anthropogenic disturbances, while conditions in exposed environments that impact forereefs have largely buffered the effects of local anthropogenic disturbances. Yet, bleaching events induced by global anthropogenic disturbances challenge how we predict changes in reef composition and function across environmental gradients. Here, we quantify spatio-temporal variation in the composition and function of 11 coral reefs across sheltered to exposed environmental conditions over 15 years and 3 bleaching events in Bocas del Toro, Panama. We find that the composition and function of lagoonal reefs and forereefs were distinct and shaped by an environmental gradient altered by anthropogenic disturbance. Lagoonal reefs lacked major reef-building species and experienced greater losses in coral species and diversity over time. Although only lagoonal reefs changed in coral species composition, both lagoonal reefs and forereefs became functionally similar over time. Our findings indicate that lagoonal reefs may be less resilient to global environmental change than forereefs due to long-term effects of local anthropogenic disturbances. Additionally, increasing global anthropogenic disturbances might lead to the homogenization of reef function, as reefs adapt to novel environmental conditions.

Whale sharks (Rhincodon typus) are found circumglobally in tropical, subtropical, and warm temperate waters, and their known seasonal aggregations and migratory movements are influenced by factors such as ocean currents, thermobiological systems, and patterns of productivity. Several locations in the eastern tropical Pacific Ocean are known habitats for R. typus; Although it has long been known that whale sharks aggregate along the Panama coast, little is known in relation to their movement patterns, behavior, and habitat use. In this study, we investigated the movements and behaviors of R. typus tagged in Panama in relation to oceanographic variables and examined the overlap of foraging habitat and migratory routes with marine protected areas (MPAs), industrial fishing areas, and marine traffic. Satellite tracks from 30 R. typus tagged in the coastal waters of Panama were examined, including nine tags suspicious of earlier detachment. A hidden Markov model was then used to identify different behavioral states (foraging and migrating) and their relationships with environmental variables (sea surface temperature, primary productivity, chlorophyll-a concentrations, and eddy location/speed) Tracks were also superimposed on maps of MPAs, industrial fishing areas, and regional marine vessel traffic to identify the degree of overlap. Rhincodon typus foraged mainly within the Panamanian exclusive economic zone but also moved north and south along the coast and out to the open ocean. Significant differences in environmental conditions were found between sites in which foraging and migrating behaviors were recorded. Higher productivity and chlorophyl concentration were associated with foraging behavior, while higher eddy speeds were observed when sharks migrated. Rhincodon typus used MPAs; however, there was a high degree of overlap between their habitat and areas of industrial fishing and marine vessel traffic. Our results highlight the use of the coastal waters of Panama, oceanic seamounts, and ridges, MPAs and industrial fishing areas by R. typus for foraging and migration. Additionally, our findings highlight the importance of satellite tracking studies for understanding the behavior and habitat use of highly mobile migratory species, such as R. typus.

The species of the genus Psammogorgia Verrill, 1868 from the shallow waters of the tropical eastern Pacific were mainly described from 1846 to 1870. Very few contributions were published subsequently. Recently, the genus was revisited with the addition of two new species. However, a comprehensive generic study is still missing for the eastern Pacific. Psammogorgia is characterised by having axes cores without mineralisation, mainly coarse irregular spindles and thorny, leafy or tuberculate clubs coenenchymal sclerites and the anthocodial armature with distinct collaret and points arrangements. Herein a taxonomic revision of the genus is presented based on type material which was morphologically analysed and illustrated using optical and scanning electron microscopy. Comparative character tables are provided for comparison among species in the genus, along with a taxonomic key. Moreover, the taxonomic status of each species was analysed. The genus Psammogorgia comprises six valid species and two varieties, and three lectotypes and a new combination are proposed to establish the taxonomic status of these species.

Se documenta por primera vez la presencia de Gymnetis stellata en Oaxaca, México. El nuevo registro se hizo con base en la colecta manual de una hembra cerca de un árbol de nanche rojo ( Malpighia mexicana) en Villa Sola de Vega y una hembra y un macho colectados en vegetación silvestre en Miahuatlán de Porfirio Díaz. Ambos sitios se localizan en la región de la Sierra Sur de Oaxaca a 1500 msnm aproximadamente. The presence of Gymnetis stellata is recorded for the first time in the state of Oaxaca, Mexico. The new report is based on a female collected by hand near a red 'nanche' tree ( Malpighia mexicana) at Villa Sola de Vega and a male and female pair collected on wild vegetation at Miahuatlán de Porfirio Díaz. Both sites are in the Sierra Sur region of Oaxaca at approximately 1,500 m elevation. [ABSTRACT FROM AUTHOR]

Whale watching has become an important economic activity for many coastal areas where whales aggregate at certain times of year. Las Perlas Archipelago in Panama is a breeding ground for humpback whales, where the numbers of both visitors and tour operators have increased in recent years with little compliance and enforcement of regulations. Nevertheless, there is potential to improve whale-watching management at this site and its use as a tool for education and conservation awareness. Our objective was to assess tourist knowledge, perceptions and pro-conservation attitudes related to whale watching and how this activity is managed in Las Perlas. One hundred and eleven tourists were surveyed in the summer of 2019 after they participated in whale−watching tours. Overall, respondents had little knowledge about whales and their conservation before a whale-watching trip. However, after the excursion, tourists felt they had learned more about whale biology and the regulations for whale-watching. Trip satisfaction after whale-watching activities was higher when whale behaviors, including breaching and tail slaps, were observed. Respondents expressed low satisfaction when there was an excessive number of boats around a whale-sighting. Concern for lack of compliance seemed to be associated with whale-watching operations that onboard tour guides. This study highlights the importance of whale watching as a tool for promoting whale conservation through education and the need to improve the enforcement of existing regulations and visitor monitoring to reduce potential negative impacts of whale-watching.

Ecotourism focused on whales and dolphins has become a popular activity and an important source of revenue for many countries. Whale watching is vital to supporting conservation efforts and provides numerous benefits to local communities including educational opportunities and job creation. However, the sustainability of whale-based ecotourism depends on the behavior and health of whale populations and it is crucial that ecotourism industries consider the impact of their activities on whale behavior. To address this statement, we collected behavioral data (e.g., change in swimming direction, frequency of breaching, slap behaviors, diving, and spy hops) from humpback whales (Megaptera novaeangliae) in the marine protected area of Las Perlas Archipelago off the Pacific coast of Panama. The goal was to determine if tourist vessel presence had an influence on whale behaviors. We conducted this study during the humpback whale breeding season from August through September 2019. Based on 47 behavioral observations, we found that higher boat density corresponded with humpback whales’ frequency of direction changes, which based on previous literature is believed to be a sign of disturbance. Alternatively, no changes in behavior were observed with varying boat density. This result is important given Panamanian regulations first implemented in 2007 by Resolution AMD/ARAP No. 01, 2007 prohibit whale-based tourism from disturbing whales, which is explicitly measured by changes in whale behavior. Because there is no systematic monitoring of whale watching activity to enforce the regulations, there is currently little compliance from tour operators and tourists. The integration of animal behavior research into management planning should result in more effective regulation and compliance of such conservation policies.

Sea turtles migrate from breeding grounds to foraging areas through the territorial waters of several countries. Olive ridleys lack clear migratory routes, which makes it a challenge for conservation. This study aimed to evaluate if the migratory behavior of olive ridleys nesting on the Pacific Coast of Panama is correlated to environmental conditions along the migration and to identify common foraging areas. Thirty-four olive ridley turtles were tagged with satellite transmitters along the Pacific coast of Panama and tracked for up to 9 months. A Hidden Markov Model was used to identify behavioral states (foraging and migrating) and their correlation to chlorophyll a concentration, sea surface temperature (SST), eddy kinetic energy (EKE), and primary productivity. Turtle tracks overlapped with eddies and industrial fishing areas. The probability of foraging rather than migrating was positively correlated to SST, productivity and chlorophyll levels and negatively correlated to EKE. Turtles spent an average 30% of their time migrating and 70% foraging. Only 8.4% of the turtle locations occurred within an eddy, and 82.7% of the locations overlapped with previously described industrial fishing areas. Although this sea turtle species seems to migrate freely, without clear migratory corridors, turtles may have preferred foraging destinations that they travel to through different migratory routes, such as the gulfs of Tehuantepec, Fonseca, and Guayaquil. Turtles traveled up to 6,684 km through nine countries, most of them foraging in oceanic waters in Salvador, Costa Rica, and Panama, which highlights the importance of collaborative conservation strategies throughout foraging and nesting areas. The creation of a regional management unit (RMU), including Costa Rica, Panama, and Colombia, is discussed based on the observed seasonal overlap with the use of multiple fishing gears in coastal and oceanic fishing areas.

The genus Muricea is considered abundant and widely distributed along the eastern Pacific. Its occurrence in shallow waters has been recognised; however species from deeper than 30 m have been rarely recorded. During the 2005 R/V Urracá expedition along the north and central Pacific coast of Costa Rica several octocoral specimens were collected by bottom trawling from 30 to 150 m yielding new species and new records. Herein we describe a new species of Muricea from deeper than 30 m. The morphological characters of the species were analysed and illustrated by optic and scanning electron microscopy. Muricea subtilis sp. n. can be distinguished from the other species in the genus by its thin spiny branches, non-imbricate calyces, white colony and sclerites, and the size and composition of sclerites. Comparative character tables are provided for the closest Muricea species-group. This new species increases the number in the genus to 26, and contributes to the knowledge on the diversity and distribution of mesophotic soft corals in the eastern Pacific.

The Hannibal Bank sits within the Coiba UNESCO World Heritage Site in Pacific Panama and is also a fisheries management zone. Despite the protected status of the area and the importance of the Bank for commercial fish species such as snapper and tuna, the seamount has received no detailed survey except some collection of organisms. This study mapped the major topographic features and complexity of the Hannibal Bank seamount using acoustic remote sensing. A survey area of around 125km² was defined using existing charts and side-scan sonar data were collected during July 2008. A bathymetric output was imported to ArcGIS where a digital bathymetric model and slope map were created. The Benthic Terrain Modeler BTM extension for ArcGIS was used to calculate bathymetric position index and rugosity, and used to create a map of zones representing the various seabed morphology zones. The Hannibal bank is an elongated, triangular guyot flat topped seamount, which ranges in depth from 53m to 416m, covers an area of 76km² and is 14.4km long and 7.1km wide. Hannibal bank is composed of steep slopes, more gentle slopes, top of the seamount, crests elevated ridges at the top of the pinnacles, rugose areas on crests, top of seamount and slope, gullies and pinnacles. The bank is asymmetric in nature with the Northerly side having a relatively gentle slope with gullies across the surface compared to the SouthWest side which is far steeper and more rugose. There are two pinnacles to the North and South East of the bank that range in depth from 180 to 333m. Rocky substrate makes up 22.6km² of the bank and sediment 37.8km². The bank and its steeply sided, rugose areas and pinnacles provide upright structures which can disrupt and topographically enhance currents, increasing productivity. The rugose areas of Hannibal Bank should be primary targets for further research efforts as they may contain corals and their rugosity indicates that these should be some of the highest faunal diversity areas of the bank. Hannibal Bank is likely to come increasing pressure in the future through climate change and fishing and this study has produced valuable information to assist in the future mapping and management of habitats, associated species and fisheries.

A research cruise to Hannibal Bank, a seamount and an ecological hotspot in the coastal eastern tropical Pacific Ocean off Panama, explored the zonation, biodiversity, and the ecological processes that contribute to the seamount’s elevated biomass. Here we describe the spatial structure of a benthic anomuran red crab population, using submarine video and autonomous underwater vehicle (AUV) photographs. High density aggregations and a swarm of red crabs were associated with a dense turbid layer 4–10 m above the bottom. The high density aggregations were constrained to 355–385 m water depth over the Northwest flank of the seamount, although the crabs also occurred at lower densities in shallower waters (∼280 m) and in another location of the seamount. The crab aggregations occurred in hypoxic water, with oxygen levels of 0.04 ml/l. Barcoding of Hannibal red crabs, and pelagic red crabs sampled in a mass stranding event in 2015 at a beach in San Diego, California, USA, revealed that the Panamanian and the Californian crabs are likely the same species, Pleuroncodes planipes, and these findings represent an extension of the southern endrange of this species. Measurements along a 1.6 km transect revealed three high density aggregations, with the highest density up to 78 crabs/m2, and that the crabs were patchily distributed. Crab density peaked in the middle of the patch, a density structure similar to that of swarming insects.

Green Jacks, Caranx caballus, are distributed along the Eastern Pacific coast. In Panama, C. caballus was heavily fished around Las Perlas Archipelago to sustain local markets until 2007, when the archipelago was declared a marine protected area. This first study in Panama, analyzed a sample of 4 990 individuals from Las Perlas, obtained monthly from June 2005 to June 2006, from landings at the central fish market. Average total length was 36.1±6.4cm and optimum length 38.9cm. Approximately 68% of fish lengths were within ±10% of the optimal length but only six (15%) were considered mega-spawners. The von Bertalanffy parameters describe a long-lived and fast growing species, while mortality rates revealed that C. caballus is under high fishing pressure. Standard length at which half of the population is mature was 38.8cm, and the size at which individuals matured massively, 33cm. Only 10-13% of the fish were immature. C. caballus reproduces two to three times per year, with peaks in December, April, and probably September, and recruits to the population at least twice per year. Catch per unit effort (CPUE) was best predicted by minimum annual values of the Multivariate ENSO/ LNSO Index (MEI) (R²=0.54). Results show that C. caballus in Pacific Panama is overfished. We recommend the raising of the minimum capture/landing size of this species in order to increase the proportion of megaspawners in the population and guarantee the sustainability of this resource.El jurel verde o “cojinúa”, Caranx caballus, se distribuye a lo largo de la costa del Pacífico Oriental. En el Archipiélago de Las Perlas, Panamá, la cojinúa fue pescada sin control para sostener mercados locales hasta el 2007, fecha en la que esta región fue declarada área marina protegida. En este primer estudio para Panamá, se analizaron desde junio de 2005 a junio de 2006, 4 990 individuos en las descargas del Mercado Central de Mariscos provenientes de Las Perlas. La longitud media total de esta especie fue de 36.1±6.4cm y la longitud óptima, 38.9cm. Aproximadamente, 68% de los individuos muestreados poseen longitudes dentro de ±10% de la longitud óptima, pero sólo seis (15%) eran mega-reproductores. Los parámetros de la ecuación de von Bertalanffy describen la especie como de larga vida y de rápido crecimiento, mientras que las tasas de mortalidad indican que la cojinúa está bajo una alta presión de pesca. La longitud estándar a la que la mitad de la población es sexualmente madura es 38.8cm y el tamaño de maduración masiva, 33cm. Sólo entre el 10-13% de los individuos muestreados son inmaduros. La cojinúa se reproduce 2-3 veces al año, con picos en diciembre, abril y probablemente septiembre, y recluta a la población por lo menos dos veces al año. Los valores mínimos anuales del Índice ENSO/LNSO multivariado (MEI) son los mejores predictores de la CPUE de esta especie (R²=0.54). Nuestros resultados demuestran que la cojinúa en el Pacífico Panameño está sobreexplotada por lo que recomendamos elevar la talla mínima de captura para permitir que aumente la proporción de mega-reproductores en la población con el fin de garantizar la sostenibilidad del recurso.

Mangrove forest is an important ecosystem that provides many services, but in Panama, as in other countries, they are under threat due to a variety of human activities. Nowadays, large areas of mangroves continue to be lost without been described and lack of management strategies. This study focused on the mangrove structure in the two largest islands, Isla del Rey and Isla San Jose, of Las Perlas Archipelago (LPA), Pacific Panama. Assessment of Landsat satellite imagery revealed loss of mangroves in the LPA of 965ha in the period 1974-1986, and 248ha in the period 1986-2000. The majority of the loss (>77%) from the two study islands was due to timber extraction and agricultural development. In May 2006, permanent plots following the CARICOMP protocol were established at two sites on Isla del Rey (R1 and R2) and one site on Isla San Jose (SJ) where standardized metrics such as species, height and diameter at breast height of adult trees and seedlings were recorded. Forest structure differed at the three sites, although R1 and R2 were most similar. At R1, Laguncularia racemosa was the important species and R2 was dominated by Pelliciera rhizophorae. Examination of the forest structure and classified imagery indicated that these sites are spatially dynamic and appear to be rejuvenating. The forest structure would indicate that the sites have been growth-limited previously by human activities and possibly by other factors. SJ was dominated by Rhizophora mangle and appears to have a mature forest with large adult trees and few seedlings. It does not appear to have shown the same extent of spatial regrowth as the other two sites between 1986 and 2000 and is relatively static. The establishment of permanent plots and monitoring will be useful as part of the management plan, as the LPA shows a variety of mangrove structures and could be subject to further coastal development. Rev. Biol. Trop. 58 (3): 857-869. Epub 2010 September 01.

Isla del Caño is a marine protected area on the south Pacific coast of Costa Rica, surrounded by coral reefs and coral communities. The ecology of these coral reefs has been studied for over 20 years, but they have not been mapped. Maps are considered a great research, planning, management and monitoring tool. Medium to high resolution images (HyMap 2005 and Quickbird 2007 respectively) were processed and classified in order to test and compare their accuracy in producing a marine habitat map. Manta tow surveys were performed in the field for identification of 7 marine habitats 1. Coral community; 2. Coral reef; 3. Bed rock; 4. Sand; 5. Sand with boulders; 6. Sand with rodolyths; and 7. Deep water. The overall accuracy was slightly higher using Quickbird (87%) than using Hymap (60%), however the difference was not significant. The map produced using Quickbird was selected to represent the marine habitats of Isla del Caño. This map will help to analyze the adequate size and zoning of the marine protected area. Rev. Biol. Trop. 58 (1): 373-381. Epub 2010 March 01.Isla del Caño es un área marina protegida en la costa del Pacífico de Costa Rica y está rodeada de arrecifes coralinos. La ecología de estos arrecifes coralinos ha sido estudiada a lo largo de 20 años pero todavía no habían sido mapeados. Los mapas son considerados una buena herramienta de investigación, planificación, manejo y monitoreo. Imágenes de mediana y alta resolución (Hymap 2005 y Quickbird 2007 respectivamente) fueron procesadas y clasificadas con el fin de evaluar y comparar su desempeño en la elaboración de un mapa de hábitats marinos. En el campo se realizaron sondeos tipo Manta para la identificación de siete hábitats marinos: 1. Comunidad coralina; 2. Arrecife coralino; 3. Roca; 4. Arena; 5. Arena con cantos; 6. Arena con rodolitos; y 7. Agua profunda. La exactitud de la clasificación resultó un poco mayor usando Quickbird (87%) que Hymap (60%), sin embargo la diferencia no era significativa. Se seleccionó el mapa resultante de la clasificación con Quickbird para representar los hábitats marinos de Isla del Caño. Este mapa puede ayudar a analizar el tamaño adecuado y la zonificación del área marina protegida.

En estudios anteriores se encontró que el área protegida del Parque Nacional Marino de Isla Bastimentos (PNMIB) no albergaba arrecifes en buen estado de conservación, desarrollo y diversidad, recomendándose ampliar el reconocimiento de arrecifes a otras áreas del archipiélago de Bocas del Toro, en particular el sector oriental del parque marino. En el presente estudio, se hizo un reconocimiento - ca. 107.5 km en total - detallado de la zona costera insular de islas Pastores, Cristóbal, Popa y Cayo Agua, donde se evaluó la distribución de los arrecifes coralinos. Se describieron un total de 24 arrecifes, los cuales representan las formaciones típicas para las distintas localidades. Se define por primera vez para el archipiélago el centro de mayor diversidad de organismos sésiles, que son importantes constructores de arrecies coralinos. El número de especies de corales escleractínidos para todo el archipiélago de Bocas del Toro aumentó a 57 y se actualizan también los registros para Panamá aumentando así a un total de 64 especies para el país. Esto implica que el archipiélago alberga el 89 % de las especies de Panamá, de las cuales 96 % o más están distribuidas en los arrecifes de la "zona de alta diversidad" encontrada en el presente estudio. De igual forma, la diversidad de octocorales aumentó a 29 especies (16 %) y las esponjas experimentaron un incremento de 16 especies (30 %) para un total de 53 especies. Se encuentran en la "zona de lata diversidad" el 94 % y 97 % de las especies de esponjas y octocorales, respectivamente. Se presentan cinco recomendaciones generales, siendo las más importante, modificar los límites existentes del PNMIB, de forma que se protejan las áreas que albergan la mayor diversidad general y la mayor abundancia de especies amenazada, o crear una red de áreas protegidas dentro del archipiélago.

BACKGROUND: The rising temperature of the world's oceans has become a major threat to coral reefs globally as the severity and frequency of mass coral bleaching and mortality events increase. In 2005, high ocean temperatures in the tropical Atlantic and Caribbean resulted in the most severe bleaching event ever recorded in the basin. METHODOLOGY/PRINCIPAL FINDINGS: Satellite-based tools provided warnings for coral reef managers and scientists, guiding both the timing and location of researchers' field observations as anomalously warm conditions developed and spread across the greater Caribbean region from June to October 2005. Field surveys of bleaching and mortality exceeded prior efforts in detail and extent, and provided a new standard for documenting the effects of bleaching and for testing nowcast and forecast products. Collaborators from 22 countries undertook the most comprehensive documentation of basin-scale bleaching to date and found that over 80% of corals bleached and over 40% died at many sites. The most severe bleaching coincided with waters nearest a western Atlantic warm pool that was centered off the northern end of the Lesser Antilles. CONCLUSIONS/SIGNIFICANCE: Thermal stress during the 2005 event exceeded any observed from the Caribbean in the prior 20 years, and regionally-averaged temperatures were the warmest in over 150 years. Comparison of satellite data against field surveys demonstrated a significant predictive relationship between accumulated heat stress (measured using NOAA Coral Reef Watch's Degree Heating Weeks) and bleaching intensity. This severe, widespread bleaching and mortality will undoubtedly have long-term consequences for reef ecosystems and suggests a troubled future for tropical marine ecosystems under a warming climate.