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Wastewater-based epidemiology during the COVID-19 pandemic has proven useful for public health decision-making but is often hampered by sampling methodology constraints, particularly at the building- or neighborhood-level. Time-weighted composite samples are commonly used; however, autosamplers are expensive and can be affected by intermittent flows in sub-sewershed contexts. In this study, we compared time-weighted composite, grab, and passive sampling via Moore swabs, at four locations across a college campus to understand the utility of passive sampling. After optimizing the methods for sample handling and processing for viral RNA extraction, we quantified SARS-CoV-2 N1 and N2, as well as a fecal strength indicator, PMMoV, by ddRT-PCR and applied tiled amplicon sequencing of the SARS-CoV-2 genome. Passive samples compared favorably with composite samples in our study area: for samples collected concurrently, 42 % of the samples agreed between Moore swab and composite samples and 58 % of the samples were positive for SARS-CoV-2 using Moore swabs while composite samples were below the limit of detection. Variant profiles from Moore swabs showed a shift from variant BA.1 to BA.2, consistent with in-person saliva samples. These data have implications for the broader implementation of sewage surveillance without advanced sampling technologies and for the utilization of passive sampling approaches for other emerging pathogens.

The use of nitrogen fertilizer on bioenergy crops such as switchgrass results in increased costs, nitrogen leaching and emissions of N2 O, a potent greenhouse gas. Intercropping with nitrogen-fixing alfalfa has been proposed as an environmentally sustainable alternative, but the effects of synthetic fertilizer versus intercropping on soil microbial community functionality remain uncharacterized. We analysed 24 metagenomes from the upper soil layer of agricultural fields from Prosser, WA over two growing seasons and representing three agricultural practices: unfertilized switchgrass (control), fertilized switchgrass and switchgrass intercropped with alfalfa. The synthetic fertilization and intercropping did not result in major shifts of microbial community taxonomic and functional composition compared with the control plots, but a few significant changes were noted. Most notably, mycorrhizal fungi, ammonia-oxidizing archaea and bacteria increased in abundance with intercropping and fertilization. However, only betaproteobacterial ammonia-oxidizing bacteria abundance in fertilized plots significantly correlated to N2 O emission and companion qPCR data. Collectively, a short period of intercropping elicits minor but significant changes in the soil microbial community toward nitrogen preservation and that intercropping may be a viable alternative to synthetic fertilization.

A new meshed tube filtration (MTF) process was developed and assessed as a low energy-consuming pretreatment process that withstands algal blooms (i.e., red tide). This process can potentially replace the dissolved air flotation (DAF) process in typical seawater reverse osmosis (SWRO) desalination plants. Two marine microalgae species, namely C. polykrikoides and T. suecica, were first cultivated and then utilized to simulate algal bloom conditions in the lab-scale filtration experiments. The algal matter was coagulated and circulated by aeration in the MTF system that was filled with cylindrical polypropylene meshed tubes with ciliary ends and had the ability to capture coagulated algae in an effective manner. The efficiency of the MTF process to remove algal cells was significantly enhanced by optimizing the coagulant dose and the aeration rate. In order to further verify the MTF performance, DAF experiments were conducted, under similar conditions, for the comparison of algal removal effectiveness and energy consumption rates. The results showed high removal rates of algal cells as well as turbidity for MTF, although only a limited reduction of algal organic matter (AOM) was observed. When DAF was operated at energy consumption levels equivalent to MTF, its algae removal rate was lower than that of MTF. Furthermore, under optimal operating conditions, MTF consumed approximately one-third of the energy needed for DAF operation, mainly due to the fact that MTF requires less aeration. For future improvements in the AOM removal process, an energy-efficient pretreatment process could be realized for SWRO desalination facilities facing potential algal blooms.