28 results on '"Gusar V"'
Search Results
2. Estimation of time-dependent microRNA expression patterns in brain tissue, leukocytes, and blood plasma of rats under photochemically induced focal cerebral ischemia
- Author
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Gusar, V. A., Timofeeva, A. V., Zhanin, I. S., Shram, S. I., and Pinelis, V. G.
- Published
- 2017
- Full Text
- View/download PDF
3. The use of a vaginal therapeutic system with prostaglandin for induction of labor
- Author
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Baev, O. R., primary, Gusar, V. A., additional, Gaydarova, A. R., additional, and Edilberg, I. V., additional
- Published
- 2022
- Full Text
- View/download PDF
4. Distribution of the HIV-1 Resistance-Conferring Alleles (CCR5delta32, CCR2-64I, and SDF1-3′A) in Russian, Ukrainian, and Belarusian Populations
- Author
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Kozhekbaeva, Zh. M., Borodina, T. A., Borinskaya, S. A., Gusar, V. A., Feschenko, S. P., Akhmetova, V. L., Khusainova, R. I., Gupalo, E. Yu., Spitsyn, V. A., Grechanina, E. J., Khusnutdinova, E. K., and Yankovsky, N. K.
- Published
- 2004
- Full Text
- View/download PDF
5. Gene Pool Structure of Eastern Ukrainians as Inferred from the Y-Chromosome Haplogroups
- Author
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Kharkov, V. N., Stepanov, V. A., Borinskaya, S. A., Kozhekbaeva, Zh. M., Gusar, V. A., Grechanina, E. Ya., Puzyrev, V. P., Khusnutdinova, E. K., and Yankovsky, N. K.
- Published
- 2004
- Full Text
- View/download PDF
6. Origin and spread of human mitochondrial DNA haplogroup U7
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Sahakyan, H. Kashani, B.H. Tamang, R. Kushniarevich, A. Francis, A. Costa, M.D. Pathak, A.K. Khachatryan, Z. Sharma, I. Van Oven, M. Parik, J. Hovhannisyan, H. Metspalu, E. Pennarun, E. Karmin, M. Tamm, E. Tambets, K. Bahmanimehr, A. Reisberg, T. Reidla, M. Achilli, A. Olivieri, A. Gandini, F. Perego, U.A. Al-Zahery, N. Houshmand, M. Sanati, M.H. Soares, P. Rai, E. Šarac, J. Šarić, T. Sharma, V. Pereira, L. Fernandes, V. Černý, V. Farjadian, S. Singh, D.P. Azakli, H. Üstek, D. Trofimova, N.E. Kutuev, I. Litvinov, S. Bermisheva, M. Khusnutdinova, E.K. Rai, N. Singh, M. Singh, V.K. Reddy, A.G. Tolk, H.-V. Cvjetan, S. Lauc, L.B. Rudan, P. Michalodimitrakis, E.N. Anagnou, N.P. Pappa, K.I. Golubenko, M.V. Orekhov, V. Borinskaya, S.A. Kaldma, K. Schauer, M.A. Simionescu, M. Gusar, V. Grechanina, E. Govindaraj, P. Voevoda, M. Damba, L. Sharma, S. Singh, L. Semino, O. Behar, D.M. Yepiskoposyan, L. Richards, M.B. Metspalu, M. Kivisild, T. Thangaraj, K. Endicott, P. Chaubey, G. Torroni, A. Villems, R.
- Abstract
Human mitochondrial DNA haplogroup U is among the initial maternal founders in Southwest Asia and Europe and one that best indicates matrilineal genetic continuity between late Pleistocene hunter-gatherer groups and present-day populations of Europe. While most haplogroup U subclades are older than 30 thousand years, the comparatively recent coalescence time of the extant variation of haplogroup U7 (∼16-19 thousand years ago) suggests that its current distribution is the consequence of more recent dispersal events, despite its wide geographical range across Europe, the Near East and South Asia. Here we report 267 new U7 mitogenomes that - analysed alongside 100 published ones - enable us to discern at least two distinct temporal phases of dispersal, both of which most likely emanated from the Near East. The earlier one began prior to the Holocene (∼11.5 thousand years ago) towards South Asia, while the later dispersal took place more recently towards Mediterranean Europe during the Neolithic (∼8 thousand years ago). These findings imply that the carriers of haplogroup U7 spread to South Asia and Europe before the suggested Bronze Age expansion of Indo-European languages from the Pontic-Caspian Steppe region. © The Author(s) 2017.
- Published
- 2017
7. Origin and spread of mitochondrial DNA haplogroup U7
- Author
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Sahakyan, H, Kashani, BH, Tamang, R, Kushniarevich, A, Francis, A, Costa, MD, Pathak, AK, Khachatryan, Z, Sharma, I, van Oven, M, Parik, J, Hovhannisyan, H, Metspalu, E, Pennarun, E, Karmin, M, Tamm, E, Tambets, K, Bahmanimehr, A, Reisberg, T, Reidla, M, Achilli, A, Olivieri, A, Gandini, F, Perego, UA, Al-Zahery, N, Houshmand, M, Sanati, MH, Soares, P, Rai, E, Šarac, J, Šarić, T, Sharma, V, Pereira, L, Fernandes, V, Černý, V, Farjadian, S, Singh, DP, Azakli, H, Üstek, D, Ekomasova, NT, Kutuev, I, Litvinov, S, Bermisheva, M, Khusnutdinova, EK, Rai, N, Singh, M, Singh, VK, Reddy, AG, Tolk, HV, Cvjetan, S, Lauc, LB, Rudan, P, Michalodimitrakis, EN, Anagnou, NP, Pappa, KI, Golubenko, MV, Orekhov, V, Borinskaya, SA, Kaldma, K, Schauer, MA, Simionescu, M, Gusar, V, Grechanina, E, Govindaraj, P, Voevoda, M, Damba, L, Sharma, S, Singh, L, Semino, O, Behar, DM, Yepiskoposyan, L, Richards, MB, Metspalu, M, Kivisild, T, Thangaraj, K, Endicott, P, Chaubey, G, Torroni, A, Villems, R, and Instituto de Investigação e Inovação em Saúde
- Subjects
Bronze Age ,Europe ,Mitochondrial haplogroup ,Middle East ,Steppe ,Holocene ,Human experiment ,Neolithic ,South Asia ,Human ,Language - Abstract
Human mitochondrial DNA haplogroup U is among the initial maternal founders in Southwest Asia and Europe and one that best indicates matrilineal genetic continuity between late Pleistocene huntergatherer groups and present-day populations of Europe. While most haplogroup U subclades are older than 30 thousand years, the comparatively recent coalescence time of the extant variation of haplogroup U7 (~16–19 thousand years ago) suggests that its current distribution is the consequence of more recent dispersal events, despite its wide geographical range across Europe, the Near East and South Asia. Here we report 267 new U7 mitogenomes that – analysed alongside 100 published ones – enable us to discern at least two distinct temporal phases of dispersal, both of which most likely emanated from the Near East. The earlier one began prior to the Holocene (~11.5 thousand years ago) towards South Asia, while the later dispersal took place more recently towards Mediterranean Europe during the Neolithic (~8 thousand years ago). These findings imply that the carriers of haplogroup U7 spread to South Asia and Europe before the suggested Bronze Age expansion of Indo-European languages from the Pontic-Caspian Steppe region.
- Published
- 2017
8. MicroRNA expression profile in patients in the early stages of ischemic stroke
- Author
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Zhanin, I. S., primary, Gusar, V. A., additional, Timofeeva, A. T., additional, Pinelis, V. G., additional, and Asanov, A. Yu., additional
- Published
- 2018
- Full Text
- View/download PDF
9. Spline-controllability and the approximate determination of the optimal spline-control
- Author
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Gusar, V. V.
- Published
- 1988
- Full Text
- View/download PDF
10. The western and eastern roots of the Saami - The story of genetic 'outliers' told by mitochondrial DNA and Y chromosomes
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Tambets, K Rootsi, S Kivisild, T Help, H Serk, P and Loogvali, EL Tolk, HV Reidla, M Metspalu, E Pliss, L and Balanovsky, O Pshenichnov, A Balanovska, E Gubina, M and Zhadanov, S Osipova, L Damba, L Voevoda, M Kutuev, I and Bermisheva, M Khusnutdinova, E Gusar, V Grechanina, E and Parik, J Pennarun, E Richard, C Chaventre, A Moisan, JP and Barac, L Pericic, M Rudan, P Terzic, R Mikerezi, I and Krumina, A Baumanis, V Koziel, S Rickards, O De Stefano, GF Anagnou, N Pappa, KI Michalodimitrakis, E and Ferak, V Furedi, S Komel, R Beckman, L Villems, R
- Abstract
The Saami are regarded as extreme genetic outliers among European populations. In this study, a high-resolution phylogenetic analysis of Saami genetic heritage was undertaken in a comprehensive context, through use of maternally inherited mitochondrial DNA ( mtDNA) and paternally inherited Y-chromosomal variation. DNA variants present in the Saami were compared with those found in Europe and Siberia, through use of both new and previously published data from 445 Saami and 17,096 western Eurasian and Siberian mtDNA samples, as well as 127 Saami and 2,840 western Eurasian and Siberian Y-chromosome samples. It was shown that the “Saami motif” variant of mtDNA haplogroup U5b is present in a large area outside Scandinavia. A detailed phylogeographic analysis of one of the predominant Saami mtDNA haplogroups, U5b1b, which also includes the lineages of the “Saami motif,” was undertaken in 31 populations. The results indicate that the origin of U5b1b, as for the other predominant Saami haplogroup, V, is most likely in western, rather than eastern, Europe. Furthermore, an additional haplogroup (H1) spread among the Saami was virtually absent in 781 Samoyed and Ob-Ugric Siberians but was present in western and central European populations. The Y-chromosomal variety in the Saami is also consistent with their European ancestry. It suggests that the large genetic separation of the Saami from other Europeans is best explained by assuming that the Saami are descendants of a narrow, distinctive subset of Europeans. In particular, no evidence of a significant directional gene flow from extant aboriginal Siberian populations into the haploid gene pools of the Saami was found.
- Published
- 2004
11. Disuniting uniformity: A pied cladistic canvas of mtDNA haplogroup H in Eurasia
- Author
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Loogvali, EL Roostalu, U Malyarchuk, BA Derenko, MV and Kivisild, T Metspalu, E Tambets, K Reidla, M Tolk, HV and Parik, J Pennarun, E Laos, S Lunkina, A Golubenko, M and Barac, L Pericic, M Balanovsky, OP Gusar, V and Khusnutdinova, EK Stepanov, V Puzyrev, V Rudan, P and Balanovska, EV Grechanina, E Richard, C Moisan, JP and Chaventre, A Anagnou, NP Pappa, KI Michalodimitrakis, EN and Claustres, M Golge, M Mikerezi, I Usanga, E Villems, R
- Abstract
It has been often stated that the overall pattern of human maternal lineages in Europe is largely uniform. Yet this uniformity may also result from an insufficient depth and width of the phylogenetic analysis, in particular of the predominant western Eurasian haplogroup (Hg) H that comprises nearly a half of the European mitochondrial DNA (mtDNA) pool. Making use of the coding sequence information from 267 mtDNA Hg H sequences, we have analyzed 830 mtDNA genomes, from 11 European, Near and Middle Eastern, Central Asian, and Altaian populations. In addition to the seven previously specified subhaplogroups, we define fifteen novel subclades of Hg H present in the extant human populations of western Eurasia. The refinement of the phylogenetic resolution has allowed us to resolve a large number of homoplasies in phylogenetic trees of Hg H based on the first hypervariable segment (HVS-I) of mtDNA. As many as 50 out of 125 polymorphic positions in HVS-I were found to be mutated in more than one subcluster of Hg H. The phylogeographic analysis revealed that sub-Hgs H1*, H1b, H1f, H2a, H3, H6a, H6b, and H8 demonstrate distinct phylogeographic patterns. The monophyletic subhaplogroups of Hg H provide means for further progress in the understanding of the (pre)historic movements of women in Eurasia and for the understanding of the present-day genetic diversity of western Eurasians in general.
- Published
- 2004
12. Ураження травної системи як прояв плейотропної дії генів при мітохондріальній дисфункції
- Author
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Grechanina, O. Ya., primary, Grechanina, Yu. B., additional, Gusar, V. A., additional, and Molodan, L. V., additional
- Published
- 2014
- Full Text
- View/download PDF
13. Studying of relationship between the violation of DNA methylation due to folate cycle enzymes deficiency and manifestation of rett syndrome
- Author
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Grechanina, O., primary, Grechanina, Y., additional, Gusar, V., additional, and Vasylieva, O., additional
- Published
- 2011
- Full Text
- View/download PDF
14. Phylogenetic approach in medical genetics. Evidence for deleterious role of ND5 gene defect in Leigh patients
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Zhadanov, S., primary, Grechanina, E., additional, Grechanina, Yu., additional, Gusar, V., additional, Fedoseeva, N., additional, Lebon, S., additional, Münnich, A., additional, and Schurr, T., additional
- Published
- 2006
- Full Text
- View/download PDF
15. [Structure of the gene pool of eastern Ukrainians from Y-chromosome haplogroups]
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Khar Kov, V. N., Vadim Stepanov, Borinskaia, S. A., Kozhekbaeva, Z. M., Gusar, V. A., Grechanina, E. I. A., Puzyrev, V. P., Khusnutdinova, E. K., and Iankovskiĭ, N. K.
16. Mutations in the gene filaggrin in patients with atopic dermatitis as a risk factor for the severity of the disease
- Author
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Balabolkin, I. L., Larkova, I. A., Vilya Bulgakova, Pinelis, V. G., Gusar, V. A., and Janin, I. S.
17. Spline-controllability and the approximate determination of the optimal spline-control
- Author
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Gusar, V. V., primary
- Published
- 1989
- Full Text
- View/download PDF
18. Diagnostic Potential of Exosomal HypoxamiRs in the Context of Hypoxia-Sumoylation-HypoxamiRs in Early Onset Preeclampsia at the Preclinical Stage.
- Author
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Gusar V, Timofeeva A, Chagovets V, Kan N, Vysokikh M, Marey M, Karapetyan A, Baev O, and Sukhikh G
- Abstract
As the search for non-invasive preclinical markers of preeclampsia (PE) expands, the number of studies on the diagnostic potential of exosomes is growing. Changes in the partial pressure of oxygen caused by impaired uteroplacental perfusion in PE are a powerful inducer of increased production and release of exosomes from cells, which also determine their cargo. At the same time, the expression pattern of oxygen-dependent microRNAs (miRNAs), called "hypoxamiRs", is modulated, and their packing into exosomes is strictly regulated by sumoylation. In connection therewith, we emphasize the evaluation of exosomal hypoxamiR expression (miR-27b-3p, miR-92b-3p, miR-181a-5p, and miR-186-5p) using quantitative RT-PCR, as well as SUMO 1-4 and UBC9 (by Western blotting), in pregnant women with early-onset PE. The findings show that miR-27b-3p and miR-92b-3p expression was significantly changed at 11-14 and 24-26 weeks of gestation in the blood plasma of pregnant women with early-onset PE, which subsequently manifested. High sensitivity and specificity (AUC = 1) were demonstrated for these miRNAs in the first trimester, and significant correlations with a decrease in hemoglobin (r = 0.71, p = 0.002; r = -0.71, p = 0.002) were established. In mid-pregnancy, the miR-27b-3p expression was found to correlate with an increase in platelets (r = -0.95, p = 0.003), and miR-92b-3p was associated with a decrease in the prothrombin index (r = 0.95, p = 0.003). Specific exomotifs of studied miRNAs were also identified, to which the sumoylated ribonucleoprotein hnRNPA2/B1 binds, carrying out their packaging into exosomes. The expression of conjugated SUMO 1 ( p = 0.05), SUMO 2/3/4 ( p = 0.03), and UBC9 ( p = 0.1) was increased in exosomes at early-onset PE, and the expression of free SUMO 1 ( p = 0.03) and SUMO 2/3/4 ( p = 0.01) was significantly increased in the placenta, as an adaptive response to hypoxia. Moreover, SUMO 2/3/4 was negatively correlated with miR-27b-3p expression in the placenta. In conclusion, the diagnostic potential of exosomal hypoxamiRs mediated by sumoylation may form the basis for the development of combined specific targets for the treatment of early-onset PE, as hnRNPA2/B1 is a target of miR-27b-3p, and its sumoylation creates miR-27b-3p-hnRNPA2/B1-SUMO 1-4 cross-talk.
- Published
- 2022
- Full Text
- View/download PDF
19. MiRNAs Regulating Oxidative Stress: A Correlation with Doppler Sonography of Uteroplacental Complex and Clinical State Assessments of Newborns in Fetal Growth Restriction.
- Author
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Gusar V, Ganichkina M, Chagovets V, Kan N, and Sukhikh G
- Abstract
Overproduction of reactive oxygen species (ROS) and, as a result, uncontrolled oxidative stress (OS) can play a central role in disorders of fetal hemodynamics and subsequent development of adverse perinatal outcomes in newborns with fetal growth restriction (FGR). Given the epigenetic nature of such disorders, the aim of our study was to evaluate the expression of miRNAs associated with OS and endothelial dysfunction (miR-27a-3p, miR-30b-5p, miR-125b-5p, miR-221-3p, miR-451a and miR-574-3p) in umbilical cord blood using real-time quantitative RT-PCR. ΜiRNA expression was evaluated in patients with FGR delivery before ( n = 9 pregnant) and after 34 weeks of gestation ( n = 13 pregnant), and the control groups corresponding to the main groups by gestational age (13 pregnant women in each group, respectively). A significant increase in miR-451a expression was detected in late-onset FGR and correlations with fetoplacental and cerebral circulation were established (increase of resistance in the umbilical artery (pulsatility index, PI UA (umbilical artery): r = -0.59, p = 0.001) and a decrease in cerebral blood flow (CPR: r = 0.48, p = 0.009)). The change in miR-125b-5p expression in the placenta is associated with reduced Doppler of cerebral hemodynamics (CPR: r = 0.73, p = 0.003; PI MCA (middle cerebral artery) : r = 0.79, p = 0.0007), and newborn weight (r = 0.56, p = 0.04) in early-onset FGR. In addition, significant changes in miR-125b-5p and miR-451a expression in umbilical cord blood plasma were found in newborns with neonatal respiratory distress syndrome (NRDS) (in early-onset FGR) and very low birth weight (VLBW) (in late-onset FGR). A number of key signaling pathways have been identified in which the regulation of the studied miRNAs is involved, including angiogenesis, neurotrophin signaling pathway and oxidative stress response. In general, our study showed that changes of the redox homeostasis in the mother-placenta-fetus system in FGR and subsequent perinatal outcomes may be due to differential expression of oxidative stress-associated miRNAs.
- Published
- 2020
- Full Text
- View/download PDF
20. Preeclampsia: The Interplay Between Oxygen-Sensitive miRNAs and Erythropoietin.
- Author
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Gusar V, Timofeeva A, Chagovets V, Kan N, Vasilchenko O, Prozorovskaya K, Ivanets T, and Sukhikh G
- Abstract
Changes in the oxygen partial pressure caused by a violation of uteroplacental perfusion are considered a powerful inducer of a cascade of reactions leading to the clinical manifestation of preeclampsia (PE). At the same time, the induction of oxygen-dependent molecule expression, in particular, miRNA and erythropoietin, is modulated. Therefore, the focus of our study was aimed at estimating the miRNA expression profile of placental tissue and blood plasma in pregnant women with preeclampsia using deep sequencing and quantitative RT-PCR, as well as determining the concentration of erythropoietin. The expression of miR-27b-3p, miR-92b-3p, miR-125b-5p, miR-181a-5p, and miR-186-5p, as regulated by hypoxia/reoxygenation, was significantly increased in blood plasma during early-onset preeclampsia. The possibility of detecting early PE according to the logistic regression model (miR-92b-3p, miR-125b-5p, and miR-181a-5p (AUC = 0.91)) was evaluated. Furthermore, the erythropoietin level, which is regulated by miR-125b-5p, was significantly increased. According to PANTHER14.1, the participation of these miRNAs in the regulation of pathways, such as the hypoxia's response via HIF activation, oxidative stress response, angiogenesis, and the VEGF signaling pathway, were determined.
- Published
- 2020
- Full Text
- View/download PDF
21. Origin and spread of human mitochondrial DNA haplogroup U7.
- Author
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Sahakyan H, Hooshiar Kashani B, Tamang R, Kushniarevich A, Francis A, Costa MD, Pathak AK, Khachatryan Z, Sharma I, van Oven M, Parik J, Hovhannisyan H, Metspalu E, Pennarun E, Karmin M, Tamm E, Tambets K, Bahmanimehr A, Reisberg T, Reidla M, Achilli A, Olivieri A, Gandini F, Perego UA, Al-Zahery N, Houshmand M, Sanati MH, Soares P, Rai E, Šarac J, Šarić T, Sharma V, Pereira L, Fernandes V, Černý V, Farjadian S, Singh DP, Azakli H, Üstek D, Ekomasova Trofimova N, Kutuev I, Litvinov S, Bermisheva M, Khusnutdinova EK, Rai N, Singh M, Singh VK, Reddy AG, Tolk HV, Cvjetan S, Lauc LB, Rudan P, Michalodimitrakis EN, Anagnou NP, Pappa KI, Golubenko MV, Orekhov V, Borinskaya SA, Kaldma K, Schauer MA, Simionescu M, Gusar V, Grechanina E, Govindaraj P, Voevoda M, Damba L, Sharma S, Singh L, Semino O, Behar DM, Yepiskoposyan L, Richards MB, Metspalu M, Kivisild T, Thangaraj K, Endicott P, Chaubey G, Torroni A, and Villems R
- Subjects
- Bayes Theorem, Geography, Humans, Mutation genetics, Phylogeny, DNA, Mitochondrial genetics, Evolution, Molecular, Haplotypes genetics
- Abstract
Human mitochondrial DNA haplogroup U is among the initial maternal founders in Southwest Asia and Europe and one that best indicates matrilineal genetic continuity between late Pleistocene hunter-gatherer groups and present-day populations of Europe. While most haplogroup U subclades are older than 30 thousand years, the comparatively recent coalescence time of the extant variation of haplogroup U7 (~16-19 thousand years ago) suggests that its current distribution is the consequence of more recent dispersal events, despite its wide geographical range across Europe, the Near East and South Asia. Here we report 267 new U7 mitogenomes that - analysed alongside 100 published ones - enable us to discern at least two distinct temporal phases of dispersal, both of which most likely emanated from the Near East. The earlier one began prior to the Holocene (~11.5 thousand years ago) towards South Asia, while the later dispersal took place more recently towards Mediterranean Europe during the Neolithic (~8 thousand years ago). These findings imply that the carriers of haplogroup U7 spread to South Asia and Europe before the suggested Bronze Age expansion of Indo-European languages from the Pontic-Caspian Steppe region.
- Published
- 2017
- Full Text
- View/download PDF
22. [A clinical case of Li syndrome caused by a mitochondrial DNA mutation].
- Author
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Zhadanov SI, Grechanina EIa, Grechanina IuB, Gusar VA, Fedoseeva NP, and Shurr TG
- Subjects
- Brain diagnostic imaging, Child, Diagnosis, Differential, Disease Progression, Fatal Outcome, Female, Follow-Up Studies, Humans, Leigh Disease diagnosis, Tomography, X-Ray Computed, DNA, Mitochondrial genetics, Leigh Disease genetics, Mutation
- Published
- 2008
23. Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia.
- Author
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Loogväli EL, Roostalu U, Malyarchuk BA, Derenko MV, Kivisild T, Metspalu E, Tambets K, Reidla M, Tolk HV, Parik J, Pennarun E, Laos S, Lunkina A, Golubenko M, Barac L, Pericic M, Balanovsky OP, Gusar V, Khusnutdinova EK, Stepanov V, Puzyrev V, Rudan P, Balanovska EV, Grechanina E, Richard C, Moisan JP, Chaventré A, Anagnou NP, Pappa KI, Michalodimitrakis EN, Claustres M, Gölge M, Mikerezi I, Usanga E, and Villems R
- Subjects
- Asia, Ethnicity, Europe, Evolution, Molecular, Female, Gene Pool, Genetic Variation, Genetics, Population, Geography, Haplotypes, Humans, Models, Genetic, Mothers, Multigene Family, Mutation, Phylogeny, DNA, Mitochondrial genetics
- Abstract
It has been often stated that the overall pattern of human maternal lineages in Europe is largely uniform. Yet this uniformity may also result from an insufficient depth and width of the phylogenetic analysis, in particular of the predominant western Eurasian haplogroup (Hg) H that comprises nearly a half of the European mitochondrial DNA (mtDNA) pool. Making use of the coding sequence information from 267 mtDNA Hg H sequences, we have analyzed 830 mtDNA genomes, from 11 European, Near and Middle Eastern, Central Asian, and Altaian populations. In addition to the seven previously specified subhaplogroups, we define fifteen novel subclades of Hg H present in the extant human populations of western Eurasia. The refinement of the phylogenetic resolution has allowed us to resolve a large number of homoplasies in phylogenetic trees of Hg H based on the first hypervariable segment (HVS-I) of mtDNA. As many as 50 out of 125 polymorphic positions in HVS-I were found to be mutated in more than one subcluster of Hg H. The phylogeographic analysis revealed that sub-Hgs H1*, H1b, H1f, H2a, H3, H6a, H6b, and H8 demonstrate distinct phylogeographic patterns. The monophyletic subhaplogroups of Hg H provide means for further progress in the understanding of the (pre)historic movements of women in Eurasia and for the understanding of the present-day genetic diversity of western Eurasians in general.
- Published
- 2004
- Full Text
- View/download PDF
24. [Distribution of the HIV-1 resistance-conferring alleles (CCR5delta32, CCR2-64I, and SDF1 3'A) in Russian, Ukrainian, and Belarusian populations].
- Author
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Kozhekbaeva GM, Borodina TA, Borinskaia SA, Gusar VA, Feshchenko SP, Akhmetova VL, Khusainova RI, Gupalo EIu, Spitsyn VA, Grechanina EIa, Khusnutdinova éK, and Iankovskiĭ NK
- Subjects
- Chemokine CXCL12, Female, Gene Frequency genetics, Humans, Male, Receptors, CCR2, Republic of Belarus, Risk Factors, Russia, Ukraine, Acquired Immunodeficiency Syndrome genetics, Alleles, Chemokines, CXC genetics, Genetic Predisposition to Disease genetics, HIV-1, Receptors, CCR5 genetics, Receptors, Chemokine genetics
- Abstract
The frequencies of three alleles, CCR5delta32, CCR2-64I, and SDF1 3'A, known to decrease the risk of AIDS onset and the rate of the disease progression in HIV-infected individuals were determined in three native population samples from Russia, Ukraine, and Belarus. The frequencies of the alleles were 0.15, 0.12, 0.21; 0.12, 0.07, 0.20; and 0.12, 0.08, 0.26 for Russians, Ukrainians, and Belarussians, respectively. The proportion of the individuals without any of three protective alleles among Russians, Ukrainians, and Belarussians constituted 49, 65, and 61%, respectively. The genotype frequencies for the three loci studied were in Hardy-Weinberg equilibrium. Based on the three-locus genotype frequencies, the hazard ratios (relative hazards, RH) of AIDS onset in HIV-infected individuals in each sample were calculated as ranging from 0.79 to 0.88. In the samples of Eastern Slavs analyzed the estimated frequencies of the AIDS-protective alleles tested, as well as the frequencies of the corresponding genotypes and the relative hazards of AIDS onset were within the range of these parameters for the other European populations. The data on the allele frequencies and the relative hazard values in Russians, Ukrainians and Belarussians can be used as the predictors of AIDS onset and progression rate in HIV-1-infected individuals from the populations studied.
- Published
- 2004
25. The western and eastern roots of the Saami--the story of genetic "outliers" told by mitochondrial DNA and Y chromosomes.
- Author
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Tambets K, Rootsi S, Kivisild T, Help H, Serk P, Loogväli EL, Tolk HV, Reidla M, Metspalu E, Pliss L, Balanovsky O, Pshenichnov A, Balanovska E, Gubina M, Zhadanov S, Osipova L, Damba L, Voevoda M, Kutuev I, Bermisheva M, Khusnutdinova E, Gusar V, Grechanina E, Parik J, Pennarun E, Richard C, Chaventre A, Moisan JP, Barác L, Pericić M, Rudan P, Terzić R, Mikerezi I, Krumina A, Baumanis V, Koziel S, Rickards O, De Stefano GF, Anagnou N, Pappa KI, Michalodimitrakis E, Ferák V, Füredi S, Komel R, Beckman L, and Villems R
- Subjects
- Europe ethnology, Gene Frequency genetics, Gene Pool, Genetic Variation genetics, Geography, Haplotypes genetics, Humans, Siberia ethnology, Time Factors, Chromosomes, Human, Y genetics, DNA, Mitochondrial genetics, Ethnicity genetics, Phylogeny
- Abstract
The Saami are regarded as extreme genetic outliers among European populations. In this study, a high-resolution phylogenetic analysis of Saami genetic heritage was undertaken in a comprehensive context, through use of maternally inherited mitochondrial DNA (mtDNA) and paternally inherited Y-chromosomal variation. DNA variants present in the Saami were compared with those found in Europe and Siberia, through use of both new and previously published data from 445 Saami and 17,096 western Eurasian and Siberian mtDNA samples, as well as 127 Saami and 2,840 western Eurasian and Siberian Y-chromosome samples. It was shown that the "Saami motif" variant of mtDNA haplogroup U5b is present in a large area outside Scandinavia. A detailed phylogeographic analysis of one of the predominant Saami mtDNA haplogroups, U5b1b, which also includes the lineages of the "Saami motif," was undertaken in 31 populations. The results indicate that the origin of U5b1b, as for the other predominant Saami haplogroup, V, is most likely in western, rather than eastern, Europe. Furthermore, an additional haplogroup (H1) spread among the Saami was virtually absent in 781 Samoyed and Ob-Ugric Siberians but was present in western and central European populations. The Y-chromosomal variety in the Saami is also consistent with their European ancestry. It suggests that the large genetic separation of the Saami from other Europeans is best explained by assuming that the Saami are descendants of a narrow, distinctive subset of Europeans. In particular, no evidence of a significant directional gene flow from extant aboriginal Siberian populations into the haploid gene pools of the Saami was found.
- Published
- 2004
- Full Text
- View/download PDF
26. [Structure of the gene pool of eastern Ukrainians from Y-chromosome haplogroups].
- Author
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Khar'kov VN, Stepanov VA, Borinskaia SA, Kozhekbaeva ZhM, Gusar VA, Grechanina EIa, Puzyrev VP, Khusnutdinova EK, and Iankovskiĭ NK
- Subjects
- Base Sequence, DNA Primers, Humans, Ukraine, Chromosomes, Human, Y, Gene Pool, Haplotypes
- Abstract
Y chromosomes from representative sample of Eastern Ukrainians (94 individuals) were analyzed for composition and frequencies of haplogroups, defined by 11 biallelic loci located in non-recombining part of the chromosome (SRY1532, YAP, 92R7, DYF155S2, 12f2, Tat, M9, M17, M25, M89, and M56). In the Ukrainian gene, pool six haplogroups were revealed: E, F (including G and I), J, N3, P, and R1a1. These haplogroups were earlier detected in a study of Y-chromosome diversity on the territory of Europe as a whole. The major haplogroup in the Ukrainian gene pool, haplogroup R1a1 (earlier designated HG3), accounted for about 44% of all Y chromosomes in the sample examined. This haplogroup is thought to mark the migration patterns of the early Indo-Europeans and is associated with the distribution of the Kurgan archaeological culture. The second major haplogroup is haplogroup F (21.3%), which is a combination of the lineages differing by the time of appearance. Haplogroup P found with the frequency of 9.6%, represents the genetic contribution of the population originating from the ancient autochthonous population of Europe. Haplogroups J and E (11.7 and 4.2%, respectively) mark the migration patterns of the Middle-Eastern agriculturists during the Neolithic. The presence of the N3 lineage (9.6%) is likely explained by a contribution of the assimilated Finno-Ugric tribes. The data on the composition and frequencies of Y-chromosome haplogroups in the sample studied substantially supplement the existing picture of the male lineage distribution in the Eastern Slav population.
- Published
- 2004
27. Origin and diffusion of mtDNA haplogroup X.
- Author
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Reidla M, Kivisild T, Metspalu E, Kaldma K, Tambets K, Tolk HV, Parik J, Loogväli EL, Derenko M, Malyarchuk B, Bermisheva M, Zhadanov S, Pennarun E, Gubina M, Golubenko M, Damba L, Fedorova S, Gusar V, Grechanina E, Mikerezi I, Moisan JP, Chaventré A, Khusnutdinova E, Osipova L, Stepanov V, Voevoda M, Achilli A, Rengo C, Rickards O, De Stefano GF, Papiha S, Beckman L, Janicijevic B, Rudan P, Anagnou N, Michalodimitrakis E, Koziel S, Usanga E, Geberhiwot T, Herrnstadt C, Howell N, Torroni A, and Villems R
- Subjects
- Africa, Asia, Emigration and Immigration, Europe, Humans, Indians, North American genetics, Polymorphism, Genetic genetics, Regulatory Sequences, Nucleic Acid genetics, DNA, Mitochondrial genetics, Genetic Variation genetics, Haplotypes genetics, Phylogeny
- Abstract
A maximum parsimony tree of 21 complete mitochondrial DNA (mtDNA) sequences belonging to haplogroup X and the survey of the haplogroup-associated polymorphisms in 13,589 mtDNAs from Eurasia and Africa revealed that haplogroup X is subdivided into two major branches, here defined as "X1" and "X2." The first is restricted to the populations of North and East Africa and the Near East, whereas X2 encompasses all X mtDNAs from Europe, western and Central Asia, Siberia, and the great majority of the Near East, as well as some North African samples. Subhaplogroup X1 diversity indicates an early coalescence time, whereas X2 has apparently undergone a more recent population expansion in Eurasia, most likely around or after the last glacial maximum. It is notable that X2 includes the two complete Native American X sequences that constitute the distinctive X2a clade, a clade that lacks close relatives in the entire Old World, including Siberia. The position of X2a in the phylogenetic tree suggests an early split from the other X2 clades, likely at the very beginning of their expansion and spread from the Near East.
- Published
- 2003
- Full Text
- View/download PDF
28. [Hemodynamic criteria of prognostication of the outcome in revascularization of the lower limbs in severe ischemia].
- Author
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Gusar VK, Ialovetskiĭ DM, Pshenichnyĭ VN, and Ivanenko AA
- Subjects
- Aorta, Abdominal surgery, Femoral Artery surgery, Humans, Ischemia physiopathology, Models, Biological, Popliteal Artery surgery, Postoperative Complications, Prognosis, Hemodynamics, Ischemia surgery, Leg blood supply
- Abstract
Experience of surgical treatment of 166 patients with severe lower limbs ischemia is summarized. The parameters of regional hemodynamics got with the help of ultrasound dopplerography, electro-magnetic flowmetry, percutaneous pO2 monitoring in the foot skin and registration of peripheral resistance of artery in distal anastomosis zone were used for prognostication of the vascular transplant function while aorto-femoral and femoro-popliteal segments reconstruction. The choice of surgical procedure tactics in accordance with prognosticated outcome permitted to lower the prevalence of an early postoperative complications from 17 to 8.4%.
- Published
- 1994
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