369 results on '"Gurusamy, G."'
Search Results
2. Factor analysis of production and marketing problems faced by banana farmers in Thoothukudi District
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Muthiah, G. and Gurusamy, G.
- Published
- 2018
3. Fuzzy Controller for Matrix Converter System to Improve its Quality of Output
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Mahendran, Nagalingam and Gurusamy, G.
- Subjects
Computer Science - Systems and Control - Abstract
In this paper, Fuzzy Logic controller is developed for ac/ac Matrix Converter. Furthermore, Total Harmonic Distortion is reduced significantly. Space Vector Algorithm is a method to improve power quality of the converter output. But its quality is limited to 86.7%.We are introduced a Cross coupled DQ axis controller to improve power quality. The Matrix Converter is an attractive topology for High voltage transformation ratio. A Matlab / Simulink simulation analysis of the Matrix Converter system is provided. The design and implementation of fuzzy controlled Matrix Converter is described. This AC-AC system is proposed as an effective replacement for the conventional AC-DC-AC system which employs a two-step power conversion., Comment: 11 pages
- Published
- 2010
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4. Design of Current Controller for Two Quadrant DC Motor Drive by Using Model Order Reduction Technique
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Ramesh, K., Ayyar, K., Nirmalkumar, A., and Gurusamy, G.
- Subjects
Computer Science - Other Computer Science - Abstract
In this paper, design of current controller for a two quadrant DC motor drive was proposed with the help of model order reduction technique. The calculation of current controller gain with some approximations in the conventional design process is replaced by proposed model order reduction method. The model order reduction technique proposed in this paper gives the better controller gain value for the DC motor drive. The proposed model order reduction method is a mixed method, where the numerator polynomial of reduced order model is obtained by using stability equation method and the denominator polynomial is obtained by using some approximation technique preceded in this paper. The designed controllers responses were simulated with the help of MATLAB to show the validity of the proposed method., Comment: 8 Pages IEEE format, International Journal of Computer Science and Information Security, IJCSIS January 2010, ISSN 1947 5500, http://sites.google.com/site/ijcsis/
- Published
- 2010
5. Implementation of New Technique for the Capacity Improvement in Wavelength Division Multiplexing Networks
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Kaliammal, N., Gurusamy, G., and Das, Vinu V., editor
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- 2013
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6. Current control scheme for three-phase power quality conditioner under balanced and unbalanced conditions
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Balasubramaniam, PM, Gurusamy, G, and Prabha, SU
- Published
- 2013
7. Resource Allocation and Multicast Routing Protocol for Optical WDM Networks
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Kaliammal, N., Gurusamy, G., Das, Vinu V, editor, and Vijaykumar, R., editor
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- 2010
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8. Implementation of New Technique for the Capacity Improvement in Wavelength Division Multiplexing Networks
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Kaliammal, N., primary and Gurusamy, G., additional
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- 2012
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9. Resource Allocation and Multicast Routing Protocol for Optical WDM Networks
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Kaliammal, N., primary and Gurusamy, G., additional
- Published
- 2010
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10. Design and analysis of power failure detector module for control of axis runaway in CNC machines during unprecedented power failures
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Vinod, B., Gurusamy, G., and Sasikumar, C.
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- 2006
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11. Isolation of sterols from the marine fungus Corollospora lacera
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MacKenzie, Sabrena E, Gurusamy, G Soundari, Piórko, Adam, Strongman, Douglas B, Hu, Tingmo, and Wright, Jeffrey LC
- Published
- 2004
12. Performance analysis of multicast routing and wavelength assignment protocol with dynamic traffic grooming in WDM networks
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Kaliammal, N., primary and Gurusamy, G., additional
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- 2011
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13. Computer Applications in Power Electronic Systems
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Nagalingam, Mahendran, primary and Gurusamy, G., additional
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- 2010
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14. Detection Of Ventricular Late Potentials Using Wavelet Transform And ANT Colony Optimization
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Subramanian, A. Sankara, primary, Gurusamy, G., additional, Selvakumar, G., additional, Paruya, Swapan, additional, Kar, Samarjit, additional, and Roy, Suchismita, additional
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- 2010
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15. THD analysis of matrix converter fed load
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Mahendran, N., primary and Gurusamy, G., additional
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- 2009
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16. MODELING AND SIMULATION OF SINE WAVE TO SINE WAVE CONVERTER FOR AC DRIVE – A TECHNOLOGY REVIEW
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MAHENDRAN, N., primary and GURUSAMY, G., additional
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- 2009
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17. Order reduction by error minimization technique
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Ramesh, K., primary, Nirmalkumar, A., additional, and Gurusamy, G., additional
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- 2008
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18. Isolation of sterols from the marine fungusCorollospora lacera
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MacKenzie, Sabrena E, primary, Gurusamy, G Soundari, additional, Piórko, Adam, additional, Strongman, Douglas B, additional, Hu, Tingmo, additional, and Wright, Jeffrey LC, additional
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- 2004
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19. Performance analysis of multicast routing and wavelength assignment protocol with dynamic traffic grooming in WDM networks.
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Kaliammal, N. and Gurusamy, G.
- Subjects
- *
MULTICASTING (Computer networks) , *ROUTING (Computer network management) , *WAVELENGTHS , *COMPUTER network protocols , *WAVELENGTH division multiplexing , *BIT rate , *INTERNET protocols - Abstract
SUMMARY The need for on-demand provisioning of wavelength-routed channels with service-differentiated offerings within the transport layer has become more essential because of the recent emergence of high bit rate Internet protocol (IP) network applications. Diverse optical transport network architectures have been proposed to achieve the above requirements. This approach is determined by fundamental advances in wavelength division multiplexing (WDM) technologies. Because of the availability of ultra long-reach transport and all-optical switching, the deployment of all-optical networks has been made possible. The concurrent transmission of multiple streams of data with the assistance of special properties of fiber optics is called WDM. The WDM network provides the capability of transferring huge amounts of data at high speeds by the users over large distances. There are several network applications that require the support of QoS multicast, such as multimedia conferencing systems, video-on-demand systems, real-time control systems, etc. In a WDM network, the route decision and wavelength assignment of lightpath connections are based mainly on the routing and wavelength assignment (RWA). The multicast RWA's task is to maximize the number of multicast groups admitted or minimize the call-blocking probability. The dynamic traffic-grooming problem in wavelength-routed networks is generally a two-layered routing problem in which traffic connections are routed over lightpaths in the virtual topology layer and lightpaths are routed over physical links in the physical topology layer. In this paper, a multicast RWA protocol for capacity improvement in WDM networks is designed. In the wavelength assignment technique, paths from the source node to each of the destination nodes and the potential paths are divided into fragments by the junction nodes and these junction nodes have the wavelength conversion capability. By using the concept of fragmentation and grouping, the proposed scheme can be generally applied for the wavelength assignment of multicast in WDM networks. An optimized dynamic traffic grooming algorithm is also developed to address the traffic grooming problem in mesh networks in the multicast scenario for maximizing the resource utilization and minimizing the blocking probability. Copyright © 2011 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
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- 2013
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20. Evaluation and Implementation of a Shunt Active Power Filter under balanced Source Voltages.
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Balasubramaniam, P. M. and Gurusamy, G.
- Subjects
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ELECTRIC potential , *ELECTRIC power filters , *ELECTRICAL load , *ELECTRIC controllers , *TIME-domain analysis - Abstract
The Shunt Active Power Filter has proved to be a useful device to eliminate harmonic currents and to compensate reactive power for nonlinear loads. The basic principle of operation of a Shunt Active Power Filter is to inject a suitable non-sinusoidal current (compensating current) into the system at the point of common coupling. An current control algorithm based on the time-domain approach for three-phase Shunt Active Power Filters is analyzed in this paper. A basic overview and evaluation of the performance of existing algorithms for active power filters are presented. According to different complicated power quality issues and various compensation purposes, a current control scheme based on time domain approach is proposed. Comparing with existing algorithms; this algorithm has shorter response time delay. Different compensating current references can thus, be accurately and easily obtained by adopting the proposed algorithm. Simulation results using MATLAB/Simulink have proven excellent performance of the proposed system and it is more effective than the available approaches. [ABSTRACT FROM AUTHOR]
- Published
- 2012
21. Geometrical solution for delta/star transformation of impedances.
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Gurusamy, G. and Sivanandam, S.N.
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- 1974
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22. Exact Analysis of Relay Control System with Hysteresis and Coulomb Friction
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Gurusamy, G.
- Abstract
Exact phase plane analysis of nonlinear system containing two-position relay element, with hysteresis under the consideration of Coulomb friction, is given. Expressions for period and amplitude of stable limit cycle are derived. The effect of Coulomb friction on limit cycle behaviour is also discussed.
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- 1975
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23. Contour Chart in Parameter Plane
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Subbayyan, R., primary and Gurusamy, G., additional
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- 1973
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24. Bioinspired copper oxide nanocomposites: harnessing plant extracts for enhanced photocatalytic performance.
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Prakalathan D, Kavitha G, and Kumar GD
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- Catalysis, Methylene Blue chemistry, Nanocomposites chemistry, Copper chemistry, Plant Extracts chemistry
- Abstract
This study focuses on developing copper oxide-based nanocomposites using plant extracts for photocatalytic applications. Curcuma amada leaf and Alysicarpus vaginalis leaf extracts were utilized alongside recycled copper precursors to synthesize photocatalysts via a green synthesis approach. Structural characterization through X-ray diffraction confirmed the formation of monoclinic CuO with reduced crystallite sizes due to plant extract incorporation. Fourier-transform infrared spectroscopy identified additional functional groups from the plant extracts, enhancing the material's properties. UV-Vis spectroscopy demonstrated increased light absorption and narrowed bandgaps in the nanocomposites, crucial for efficient photocatalysis under visible light. Morphological studies using FESEM revealed unique leaf-like structures in nanocomposites, indicative of the plant extract's influence on morphology. Photocatalytic degradation of methylene blue, rhodamine B, Congo red, and reactive blue 171 dyes showed enhanced performance of plant extract-modified CuO compared to without plant extract mediated CuO, attributed to improved charge carrier separation and extended lifetime. The effects of pH, catalyst dosage, and dye concentration on degradation efficiency were systematically investigated, highlighting optimal conditions for each dye type. Radical scavenger studies confirmed the roles of holes and hydroxyl radicals in the degradation process. Kinetic analysis revealed pseudo-second-order kinetics for dye degradation, underscoring the effectiveness of the nanocomposites. Overall, this research provides insights into sustainable photocatalytic materials using plant extracts and recycled copper, showcasing their potential for environmental remediation applications., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2024
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25. Typical pneumonia among human immunodeficiency virus-infected patients in public hospitals in southern Ethiopia.
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Assefa A, Woldemariam M, Aklilu A, Alelign D, Zakir A, Manilal A, Mohammed T, M Alahmadi R, Raman G, and Idhayadhulla A
- Subjects
- Humans, Ethiopia epidemiology, Female, Male, Adult, Cross-Sectional Studies, Middle Aged, Microbial Sensitivity Tests, Anti-Bacterial Agents therapeutic use, Anti-Bacterial Agents pharmacology, Prevalence, beta-Lactamases metabolism, Pneumonia microbiology, Pneumonia epidemiology, Pneumonia drug therapy, Young Adult, Sputum microbiology, Methicillin-Resistant Staphylococcus aureus isolation & purification, Methicillin-Resistant Staphylococcus aureus drug effects, HIV Infections complications, HIV Infections epidemiology, HIV Infections drug therapy, HIV Infections microbiology, Hospitals, Public
- Abstract
Background: Typical pneumonia is a pressing issue in the treatment of human immunodeficiency virus (HIV) patients, especially in Sub-Saharan Africa, where it remains a significant menace. Addressing this problem is crucial in improving health outcomes and the reduction of the burden of diseases in this vulnerable category of patients., Objective: To determine the prevalence of community-acquired typical pneumonia among HIV patients in Public Hospitals in southern Ethiopia., Methods: A cross-sectional study was done among 386 HIV patients clinically suspected of typical pneumonia attending the anti-retroviral therapy (ART) clinics of two hospitals from March to September 2022. A pretested structured questionnaire was employed to collect the demographic, clinical, and behavioral data. Sputum samples were collected and inspected for bacteria following standard procedures, and antimicrobial susceptibility testing was performed employing the Kirby-Bauer disk diffusion method. Besides, extended-spectrum β-lactamase (ESβL) and carbapenemase-producing Gram-negative bacteria were inspected by the double disk synergy test and modified carbapenem inactivation method. Descriptive and inferential statistical analyses were also done., Results: Overall, 39.1% (151/386) of sputum cultures (95% Confidence Interval: 32.4-44) were bacteriologically positive. A total of 151 bacteria were identified, comprising 72.8% (n = 110) of Gram-negative bacteria. The predominant isolate was Klebsiella pneumoniae (25.8%, n = 39), followed by Staphylococcus aureus (17.9%, n = 27); 59.6% (n = 90) of the entire isolates were multidrug-resistant (MDR). Forty percent (11/27) of S. aureus were methicillin-resistant S. aureus (MRSA), and 28.1% (n = 31) and 20.9% (n = 23) of Gram-negative bacteria were extended-spectrum beta-lactamases (ESBL) and carbapenemase producers, respectively. Occupational status, alcohol consumption, cluster of differentiation4 (CD4) Thymocyte cell count < 350, interruption of trimethoprim-sulfamethoxazole prophylaxis and antiretroviral treatment, and recent viral load ≥ 150 were found statistically significant., Conclusion: The higher rates of MDR, MRSA, ESBL, and carbapenem-resistant Enterobacterales (CRE) indicate that bacterial pneumonia is a vexing problem among HIV patients and therefore it is advisable to implement an antimicrobial stewardship program in the study area., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Assefa et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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26. Efficacy and tolerability of a 4-month ofloxacin-containing regimen compared to a 6-month regimen in the treatment of patients with superficial lymph node tuberculosis: a randomized trial.
- Author
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Hissar S, Velayutham B, Tamizhselvan M, Rathinam S, Arunbabu C, Vidhya JB, Vargunapandian G, Sundararajaperumal A, Sivaramakrishnan GN, Chelvi S, Ramesh PM, Arun D, Reddy SD, Kumaran PP, Kumar MM, Kalaiselvi D, Hanna LE, Kumar H, Gowrisankar A, Rajavelu R, Jayabal L, Ponnuraja C, and Baskaran D
- Subjects
- Humans, Adult, Male, Female, Treatment Outcome, Middle Aged, India, Rifampin therapeutic use, Rifampin administration & dosage, Rifampin adverse effects, Young Adult, Isoniazid therapeutic use, Isoniazid administration & dosage, Isoniazid adverse effects, Drug Therapy, Combination, Pyrazinamide therapeutic use, Pyrazinamide administration & dosage, Pyrazinamide adverse effects, Ethambutol therapeutic use, Ethambutol administration & dosage, Ethambutol adverse effects, Drug Administration Schedule, Adolescent, Ofloxacin administration & dosage, Ofloxacin adverse effects, Ofloxacin therapeutic use, Tuberculosis, Lymph Node drug therapy, Antitubercular Agents therapeutic use, Antitubercular Agents adverse effects, Antitubercular Agents administration & dosage
- Abstract
Background: Tuberculosis (TB) lymphadenitis is the most common form of extra-pulmonary TB, and the treatment duration is six months. This non-inferiority based randomized clinical trial in South India evaluated the efficacy and safety of a four-month ofloxacin containing regimen in tuberculosis lymphadenitis (TBL) patients., Methods: New, adult, HIV-negative, microbiologically and or histopathologically confirmed superficial lymph node TB patients were randomized to either four-month oflaxacin containing test regimen [ofloxacin (O), isoniazid (H), rifampicin (R), pyrazinamide (Z) -2RHZO daily/ 2RHO thrice-weekly] or a six-month thrice-weekly control regimen (2HRZ, ethambutol/4RH). The treatment was directly observed. Clinical progress was monitored monthly during and up to 12 months post-treatment, and thereafter every three months up to 24 months. The primary outcome was determined by response at the end of treatment and TB recurrence during the 24 months post-treatment., Results: Of the 302 patients randomized, 298 (98.7%) were eligible for modified intention-to-treat (ITT) analysis and 294 (97%) for per-protocol (PP) analysis. The TB recurrence-free favourable response in the PP analysis was 94.0% (95% CI: 90.1-97.8) and 94.5% (95% CI: 90.8-98.2) in the test and control regimen respectively, while in the ITT analysis, it was 92.7% and 93.2%. The TB recurrence-free favourable response in the test regimen was non-inferior to the control regimen 0.5% (95% CI: -4.8-5.9) in the PP analysis based on the 6% non-inferiority margin. Treatment was modified for drug toxicity in two patients in the test regimen, while one patient had a paradoxical reaction., Conclusion: The 4-month ofloxacin containing regimen was found to be non-inferior and as safe as the 6-month thrice-weekly control regimen., (© 2024. The Author(s).)
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- 2024
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27. Large Language Models and Genomics for Summarizing the Role of microRNA in Regulating mRNA Expression.
- Author
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Bhasuran B, Manoharan S, Iyyappan OR, Murugesan G, Prabahar A, and Raja K
- Abstract
microRNA (miRNA)-messenger RNA (mRNA or gene) interactions are pivotal in various biological processes, including the regulation of gene expression, cellular differentiation, proliferation, apoptosis, and development, as well as the maintenance of cellular homeostasis and pathogenesis of numerous diseases, such as cancer, cardiovascular diseases, neurological disorders, and metabolic conditions. Understanding the mechanisms of miRNA-mRNA interactions can provide insights into disease mechanisms and potential therapeutic targets. However, extracting these interactions efficiently from a huge collection of published articles in PubMed is challenging. In the current study, we annotated a miRNA-mRNA Interaction Corpus (MMIC) and used it for evaluating the performance of a variety of machine learning (ML) models, deep learning-based transformer (DLT) models, and large language models (LLMs) in extracting the miRNA-mRNA interactions mentioned in PubMed. We used the genomics approaches for validating the extracted miRNA-mRNA interactions. Among the ML, DLT, and LLM models, PubMedBERT showed the highest precision, recall, and F-score, with all equal to 0.783. Among the LLM models, the performance of Llama-2 is better when compared to others. Llama 2 achieved 0.56 precision, 0.86 recall, and 0.68 F-score in a zero-shot experiment and 0.56 precision, 0.87 recall, and 0.68 F-score in a three-shot experiment. Our study shows that Llama 2 achieves better recall than ML and DLT models and leaves space for further improvement in terms of precision and F-score.
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- 2024
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28. Plastisphere-hosted viruses: A review of interactions, behavior, and effects.
- Author
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Kutralam-Muniasamy G, Shruti VC, and Pérez-Guevara F
- Subjects
- Plastics, Virus Physiological Phenomena, Biofilms, Ecosystem, Microplastics, Viruses
- Abstract
Microbial communities, including bacteria, diatoms, and fungi, colonize plastic surfaces, forming biofilms known as the "plastisphere." Recent research has revealed that plastispheres also host a wide range of viruses, sparking interest in microbial ecology and virology. This shared habitat allows viruses to replicate, interact, infect, and spread, potentially impacting the environment and human health. Consequently, viruses attached to microplastics are now recognized to have broad effects on cellular and immune responses. However, the ecology and implications of viruses hosted in plastisphere habitats remain poorly understood, highlighting their fundamental importance as a subject of study. This review explores various pathways for virus attachment to plastispheres, factors influencing these interactions, their impacts within plastisphere and host-associated environments, and associated issues. It also summarizes current research and identifies knowledge gaps. We anticipate that this paper will help improve our predictive understanding of plastisphere viruses in natural settings and emphasizes the need for more research in real-world environments to advance the field., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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29. Cooking with liquefied petroleum gas or biomass and fetal growth outcomes: a multi-country randomised controlled trial.
- Author
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Checkley W, Thompson LM, Hossen S, Nicolaou L, Williams KN, Hartinger SM, Chiang M, Balakrishnan K, Garg SS, Thangavel G, Aravindalochanan V, Rosa G, Mukeshimana A, Ndagijimana F, McCracken JP, Diaz-Artiga A, Sinharoy SS, Waller L, Wang J, Jabbarzadeh S, Chen Y, Steenland K, Kirby MA, Ramakrishnan U, Johnson M, Pillarisetti A, McCollum ED, Craik R, Ohuma EO, Dávila-Román VG, de Las Fuentes L, Simkovich SM, Peel JL, Clasen TF, and Papageorghiou AT
- Subjects
- Female, Humans, Infant, Newborn, Male, Pregnancy, Biomass, Cooking, India, United States, Adolescent, Young Adult, Adult, Air Pollutants, Fetal Development
- Abstract
Background: Household air pollution might lead to fetal growth restriction during pregnancy. We aimed to investigate whether a liquefied petroleum gas (LPG) intervention to reduce personal exposures to household air pollution during pregnancy would alter fetal growth., Methods: The Household Air Pollution Intervention Network (HAPIN) trial was an open-label randomised controlled trial conducted in ten resource-limited settings across Guatemala, India, Peru, and Rwanda. Pregnant women aged 18-34 years (9-19 weeks of gestation) were randomly assigned in a 1:1 ratio to receive an LPG stove, continuous fuel delivery, and behavioural messaging or to continue usual cooking with biomass for 18 months. We conducted ultrasound assessments at baseline, 24-28 weeks of gestation (the first pregnancy visit), and 32-36 weeks of gestation (the second pregnancy visit), to measure fetal size; we monitored 24 h personal exposures to household air pollutants during these visits; and we weighed children at birth. We conducted intention-to-treat analyses to estimate differences in fetal size between the intervention and control group, and exposure-response analyses to identify associations between household air pollutants and fetal size. This trial is registered with ClinicalTrials.gov (NCT02944682)., Findings: Between May 7, 2018, and Feb 29, 2020, we randomly assigned 3200 pregnant women (1593 to the intervention group and 1607 to the control group). The mean gestational age was 14·5 (SD 3·0) weeks and mean maternal age was 25·6 (4·5) years. We obtained ultrasound assessments in 3147 (98·3%) women at baseline, 3052 (95·4%) women at the first pregnancy visit, and 2962 (92·6%) at the second pregnancy visit, through to Aug 25, 2020. Intervention adherence was high (the median proportion of days with biomass stove use was 0·0%, IQR 0·0-1·6) and pregnant women in the intervention group had lower mean exposures to particulate matter with a diameter less than 2·5 μm (PM
2·5 ; 35·0 [SD 37·2] μg/m3 vs 103·3 [97·9] μg/m3 ) than did women in the control group. We did not find differences in averaged post-randomisation Z scores for head circumference (0·30 vs 0·39; p=0·04), abdominal circumference (0·38 vs 0·39; p=0·99), femur length (0·44 vs 0·45; p=0·73), and estimated fetal weight or birthweight (-0·13 vs -0·12; p=0·70) between the intervention and control groups. Personal exposures to household air pollutants were not associated with fetal size., Interpretation: Although an LPG cooking intervention successfully reduced personal exposure to air pollution during pregnancy, it did not affect fetal size. Our findings do not support the use of unvented liquefied petroleum gas stoves as a strategy to increase fetal growth in settings were biomass fuels are used predominantly for cooking., Funding: US National Institutes of Health and Bill & Melinda Gates Foundation., Translations: For the Kinyarwanda, Spanish and Tamil translations of the abstract see Supplementary Materials section., Competing Interests: Declaration of interests LW reports a grant from the US National Institute of Environmental Health Sciences. All other authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2024
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30. Computational modelling and optimization studies of electropentamer for molecular imprinting of DJ-1.
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Dhinesh Kumar M, Karthikeyan M, Kaniraja G, Muthukumar K, Muneeswaran G, and Karunakaran C
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- Humans, Polymers chemistry, Molecular Docking Simulation, Pyrroles, Molecular Dynamics Simulation, Biomarkers, Parkinson Disease, Molecular Imprinting methods
- Abstract
Parkinson's disease (PD) is the most prevalent type of incurable movement disorder. Recent research findings propose that the familial PD-associated molecule DJ-1 exists in cerebrospinal fluid (CSF) and that its levels may be altered as Parkinson's disease advances. By using a molecularly imprinted polymer (MIP) as an artificial receptor, it becomes possible to create a functional MIP with predetermined selectivity for various templates, particularly for the DJ-1 biomarker associated with Parkinson's disease. It mostly depends on molecular recognition via interactions between functional monomers and template molecules. So, the computational methods for the appropriate choice of functional monomers for creating molecular imprinting electropolymers (MIEPs) with particular recognition for the detection of DJ-1, a pivotal biomarker involved in PD, are undertaken in this study. Here, molecular docking, molecular dynamics simulations (MD), molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) methods, and quantum mechanical calculation have been applied to investigate the intermolecular interaction between DJ-1 and several functional electropentamers, viz., polypyrrole (PPy), poly(3,4-ethylenedioxythiophene) (PEDOT), poly(o-aminophenol) (POAP), and polythiophene (PTS). In this context, the electropentamers were selected to mimic the imprinted electropolymer system. We analyzed the most stable configurations of the formed complexes involving DJ-1 and electropentamers as a model system for MIEPs. Among these, PEDOT exhibited a more uniform arrangement around DJ-1, engaging in numerous van der Waals, H-bond, electrostatic, and hydrophobic interactions. Hence, it can be regarded as a preferable choice for synthesizing a MIP for DJ-1 recognition. Thus, it will aid in selecting a suitable functional monomer, which is of greater significance in the design and development of selective DJ-1/MIP sensors., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper, (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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31. Aerobic vaginitis, bacterial vaginosis, and vaginal candidiasis among women of reproductive age in Arba Minch, southern Ethiopia.
- Author
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Aklilu A, Woldemariam M, Manilal A, Koira G, Alahmadi RM, Raman G, Idhayadhulla A, and Yihune M
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- Humans, Female, Ethiopia epidemiology, Adult, Cross-Sectional Studies, Young Adult, Adolescent, Vagina microbiology, Middle Aged, Vaginitis microbiology, Vaginitis epidemiology, Anti-Bacterial Agents therapeutic use, Anti-Bacterial Agents pharmacology, Bacteria, Aerobic isolation & purification, Prevalence, Vaginosis, Bacterial epidemiology, Vaginosis, Bacterial microbiology, Candidiasis, Vulvovaginal epidemiology, Candidiasis, Vulvovaginal microbiology
- Abstract
Reproductive tract infections (RTIs) are a persistent public health threat worldwide, particularly among women in low-income countries of Africa, including Ethiopia, where drug resistance is also a growing problem. It is crucial to address this problem to ensure women's health and well-being. A cross-sectional study was carried out among a cohort of 398 women of reproductive age who sought medical attention at the Gynecology Department of the Arba Minch General Hospital, southern Ethiopia, from January to June 2020. They were chosen through systematic random sampling, and a pre-tested structured questionnaire was used to collect the data. The collection of vaginal and/or cervical swabs were done to diagnose bacterial vaginosis (BV) and aerobic vaginitis (AV) using Nugent and AV score analyses, respectively. The swabs were subjected to standard microbiological culture techniques to detect the isolates causing AV and vaginal candidiasis (VC). The susceptibility profiles of the causative agents of AV were checked by the Kirby-Bauer disc diffusion technique. Descriptive and inferential statistical analyses were also done. Aerobic vaginitis was the predominantly diagnosed RTI (n = 122, 30.7%), followed by BV (n = 117, 29.4%) and VC (n = 111, 27.9%). The prominent bacteria of AV were Escherichia coli (n = 36, 34.2%) and Klebsiella pneumoniae (n = 30, 28.5%). The overall rate of multidrug-resistant (MDR) bacteria was 65.71% (n = 69). History of abortion (p = 0.01; AOR = 4.0, 95% CI = 2.1, 7.7) and the habit of using vaginal pH-altering contraceptives (p = 0.01; AOR = 4.7, 95% CI = 2.5, 8.8) have the greatest odds of RTI. The high prevalence of RTIs in our study warrants an urgent intervention to minimize the associated morbidities and complications. The overall rate of MDR bacterial isolates necessitates the implementation of an effective surveillance program in the study setting., (© 2024. The Author(s).)
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- 2024
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32. Nitric oxide-scavenging hyaluronic acid nanoparticles for osteoarthritis treatment.
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Nah Y, Sobha S, Saravanakumar G, Kang BY, Yoon JB, and Kim WJ
- Subjects
- Mice, Animals, Hyaluronic Acid chemistry, Nitric Oxide, Inflammation drug therapy, Pain drug therapy, Nanoparticles, Osteoarthritis drug therapy, Cartilage, Articular
- Abstract
Osteoarthritis (OA) is a degenerative arthritis disease marked by inflammation, pain, and cartilage deterioration. Elevated nitric oxide (NO) levels play a pivotal role in mediating OA-related inflammation and are found in abundance within OA joints. This study introduces a NO-scavenging hyaluronic acid conjugate (HA-NSc) bearing both lubrication and anti-inflammatory properties for the treatment of osteoarthritis. For this, a derivative of o -phenylenediamine ( o -PD) with good NO-scavenging capability (NSc) is designed, synthesized and chemically conjugated to HA. Owing to the amphiphilicity, this as-synthesized HA-NSc conjugate formed self-assembled nanoparticles (HA-NSc NPs) under aqueous conditions. When treated with activated murine macrophage RAW 264.7 cells that produce high levels of NO, these nanoparticles effectively reduced intracellular NO concentrations and inflammatory cytokines. In an OA animal model, the HA-NSc NPs significantly alleviated pain and diminished the cartilage damage due to the combined lubricating property of HA and NO-scavenging ability of NSc. Overall, the results from the study suggest HA-NSc NPs as a dual-action therapeutic agent for the treatment of OA by alleviating pain, inflammation, and joint damage, and also positioning the HA-NSc NPs as a promising candidate for innovative treatment of OA.
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- 2024
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33. Understanding a point mutation signature D54K in the caspase activation recruitment domain of NOD1 capitulating concerted immunity via atomistic simulation.
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Raghuraman P, Ramireddy S, Raman G, Park S, and Sudandiradoss C
- Abstract
Point mutation D54K in the human N-terminal caspase recruitment domain (CARD) of nucleotide-binding oligomerization domain -1 (NOD1) abrogates an imperative downstream interaction with receptor-interacting protein kinase (RIPK2) that entails combating bacterial infections and inflammatory dysfunction. Here, we addressed the molecular details concerning conformational changes and interaction patterns (monomeric-dimeric states) of D54K by signature-based molecular dynamics simulation. Initially, the sequence analysis prioritized D54K as a pathogenic mutation, among other variants, based on a sequence signature. Since the mutation is highly conserved, we derived the distant ortholog to predict the sequence and structural similarity between native and mutant. This analysis showed the utility of 33 communal core residues associated with structural-functional preservation and variations, concurrently served to infer the cryptic hotspots Cys39, Glu53, Asp54, Glu56, Ile57, Leu74, and Lys78 determining the inter helical fold forming homodimers for putative receptor interaction. Subsequently, the atomistic simulations with free energy (MM/PB(GB)SA) calculations predicted structural alteration that takes place in the N-terminal mutant CARD where coils changed to helices (45
α3- L4-α4-L6- α6 83) in contrast to native (45T2-L4-α4-L6-T4 83). Likewise, the C-terminal helices 93T1-α7 105 connected to the loops distorted compared to native 93α6-L7 105 may result in conformational misfolding that promotes functional regulation and activation. These structural perturbations of D54K possibly destabilize the flexible adaptation of critical homotypicNOD1 CARD-CARDRIPK2 interactions (α4 Asp42-Arg488α5 andα6 Phe86-Lys471α4 ) is consistent with earlier experimental reports. Altogether, our findings unveil the conformational plasticity of mutation-dependent immunomodulatory response and may aid in functional validation exploring clinical investigation on CARD-regulated immunotherapies to prevent systemic infection and inflammation.Communicated by Ramaswamy H. Sarma.- Published
- 2024
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34. Synthesis of a New Series of Anthraquinone-Linked Cyclopentanone Derivatives: Investigating the Antioxidant, Antibacterial, Cytotoxic and Tyrosinase Inhibitory Activities of the Mushroom Tyrosinase Enzyme Using Molecular Docking.
- Author
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Mullaivendhan J, Akbar I, Ahamed A, Gatasheh MK, Hatamleh AA, Raman G, Manilal A, and Kuzhunellil Raghavanpillai S
- Subjects
- Monophenol Monooxygenase, Molecular Docking Simulation, Antioxidants pharmacology, Kinetics, Anti-Bacterial Agents pharmacology, Anthraquinones pharmacology, Agaricales, Antineoplastic Agents, Cyclopentanes
- Abstract
Purpose: New bioactive anthraquinone derivatives are investigated for antibacterial, tyrosinase inhibitory, antioxidant cytotoxic activity, and molecular docking., Methods: The compounds were produced using the grindstone method, yielding 69 to 89%. These compounds were analyzed using IR,
1 H, and13 C NMR and elemental and mass spectral methods. Additionally, the antibacterial, antioxidant, and tyrosinase inhibitory activities of all the synthesised compounds were evaluated., Results: Compound 2 showed remarkable tyrosinase inhibition activity, with an (IC50 : 13.45 µg/mL), compared to kojic acid (IC50 : 19.40 µg/mL). It also exhibited moderate antioxidant and antibacterial activities with respect to the references BHT and ampicillin, respectively. Kinetic analysis revealed that the tyrosinase inhibitory activity of compound 2 was non-competitive and competitive, whereas that of compound 1 was low. All compounds (1-8) were significantly less active than doxorubicin (LC50 : 0.74±0.01μg/mL). However, compound 2 affinity for the 2Y9X protein was lower than kojic acid, with a lower docking score (-8.6 kcal/mol compared to (-4.7 kcal/mol), making it more effective., Conclusion: All synthesized compounds displayed remarkable antibacterial, tyrosinase inhibitory, antioxidant, and cytotoxic activities, with compound 2 showing exceptional potency as a multitarget agent. Anthraquinone substituent groups may offer the potential for the development of treatments. The derivatives were synthesized using the grindstone method, and their antibacterial, antioxidant, tyrosinase inhibitory, and cytotoxic activities were inspected. Molecular docking and molecular dynamics simulations were performed using compound 2 and kojic acid to validate the results and confirm the stability of the compounds., Competing Interests: The authors declare no conflicts of interest in this work., (© 2024 Mullaivendhan et al.)- Published
- 2024
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35. Microplastisphere antibiotic resistance genes: A bird's-eye view on the plastic-specific diversity and enrichment.
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Shruti VC, Kutralam-Muniasamy G, and Pérez-Guevara F
- Subjects
- Microplastics, Genes, Bacterial, Drug Resistance, Microbial genetics, Anti-Bacterial Agents pharmacology, Plastics
- Abstract
The microplastisphere is a dense consortium of metabolically active microorganisms that develops on the surface of microplastics. Since the discovery that it harbors antibiotic resistance genes (ARGs), there has been a quest to decipher the relationship between ARG occurrences and selective enrichment with plastic types, which is important to understand their fate in diverse environmental settings. Nonetheless, it remains a neglected topic, and this developing field of microplastics research could benefit from a comprehensive review to acquire a deeper understanding of the most recent advances and drive scientific progress. Accordingly, the goal of this review is to critically discuss and provide an in-depth assessment of the evidence of ARGs' global nature in microplastispheres, as well as explore factors that influence them directly and indirectly, highlighting important concerns and knowledge gaps throughout the article. By comprehensively covering them, we underscore the potential environmental implications associated with microplastisphere ARGs. From our analysis, it emerged that microplastisphere ARGs are likely to be impacted not only by differences in microplastic types and characteristics but also by how their environments are shaped by other agents such as physiochemical properties, socioeconomic factors, and contaminants coexistence, influencing ARG subtype, incidence, abundance, and selective enrichment. The intricate relationship of microplastisphere ARGs to environmental conditions and plastic types calls for multilevel investigations to clearly assess the environmental fate of microplastics. We anticipate that this review could assist researchers in strengthening their foundation and identifying efforts to advance knowledge in this research field., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2024
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36. Pyrogallol loaded chitosan-based polymeric hydrogel for controlling Acinetobacter baumannii wound infections: Synthesis, characterization, and topical application.
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Abirami G, Alexpandi R, Jayaprakash E, Roshni PS, and Ravi AV
- Subjects
- Animals, Humans, Hydrogels pharmacology, Pyrogallol, Gelatin, Zebrafish, Anti-Bacterial Agents pharmacology, Chitosan, Acinetobacter baumannii, Wound Infection
- Abstract
Antibacterial hydrogels have emerged as a promising approach for wound healing, owing to their ability to integrate antibacterial agents into the hydrogel matrix. Benefiting from its remarkable antibacterial and wound-healing attributes, pyrogallol has been introduced into chitosan-gelatin for the inaugural development of an innovative antibacterial polymeric hydrogel tailored for applications in wound healing. Hence, we observed the effectiveness of pyrogallol in inhibiting the growth of A. baumannii, disrupting mature biofilms, and showcasing robust antioxidant activity both in vitro and in vivo. In addition, pyrogallol promoted the migration of human epidermal keratinocytes and exhibited wound healing activity in zebrafish. These findings suggest that pyrogallol holds promise as a therapeutic agent for wound healing. Interestingly, the pyrogallol-loaded chitosan-gelatin (Pyro-CG) hydrogel exhibited enhanced mechanical strength, stability, controlled drug release, biodegradability, antibacterial activity, and biocompatibility. In vivo results established that Pyro-CG hydrogel promotes wound closure and re-epithelialization in A. baumannii-induced wounds in molly fish. Therefore, the prepared Pyro-CG polymeric hydrogel stands poised as a potent and promising agent for wound healing with antibacterial properties. This holds considerable promise for the development of effective therapeutic interventions to address the increasing menace of A. baumannii-induced wound infections., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier B.V.)
- Published
- 2024
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37. Mushroom tyrosinase enzyme catalysis: synthesis of larvicidal active geranylacetone derivatives against Culex quinquesfasciatus and molecular docking studies.
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Mullaivendhan J, Ahamed A, Arif IA, Raman G, and Akbar I
- Abstract
The grindstone process, which uses tyrosinase as a catalyst, was used to create analogues of geranylacetone. Tyrosinase was used to prepare the Mannich base under favourable reaction conditions, resulting in a high yield. All synthesized compounds were characterized using FTIR, Nuclear magnetic resonance, and mass spectral analyses. The active geranylacetone derivatives ( 1a-l ) were investigated for larvicidal activity against Culex quinquefasciatus ; compound 1b (LD
50 :20.7 μg/mL) was noticeably more effective than geranylacetone (LD50 : >100 μg/mL) and permethrin (LD50 : 24.4 μg/mL) lead compounds because of their ability to kill larvae and use them as pesticides. All compounds (1a-1l) were found to be low toxic, whereas compounds 1b, 1d , and 1k were screened for antifeedant screening of non -aquatic target for the toxicity measurement against marine fish Oreochromis mossambicus at 100 μg/mL caused 0% mortality in within 24 h. Molecular docking studies of synthesised compound 1b and permethrin docked with 3OGN, compound 1b demonstrated a greater binding affinity (-9.6 kcal/mol) compared to permethrin (-10.5 kcal/mol). According to these results, the newly synthesised geranylacetone derivatives can serve as lead molecules of larvicides agents., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Mullaivendhan, Ahamed, Arif, Raman and Akbar.)- Published
- 2024
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38. Liquefied Petroleum Gas or Biomass Cooking and Severe Infant Pneumonia.
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McCollum ED, McCracken JP, Kirby MA, Grajeda LM, Hossen S, Moulton LH, Simkovich SM, Goodman-Palmer D, Rosa G, Mukeshimana A, Balakrishnan K, Thangavel G, Garg SS, Castañaza A, Thompson LM, Diaz-Artiga A, Papageorghiou AT, Davila-Roman VG, Underhill LJ, Hartinger SM, Williams KN, Nicolaou L, Chang HH, Lovvorn AE, Rosenthal JP, Pillarisetti A, Ye W, Naeher LP, Johnson MA, Waller LA, Jabbarzadeh S, Wang J, Chen Y, Steenland K, Clasen TF, Peel JL, and Checkley W
- Subjects
- Female, Humans, Infant, Pregnancy, Particulate Matter adverse effects, Particulate Matter analysis, Adolescent, Young Adult, Adult, Internationality, Maternal Exposure adverse effects, Prenatal Exposure Delayed Effects etiology, Air Pollution, Indoor adverse effects, Air Pollution, Indoor analysis, Biomass, Cooking methods, Petroleum adverse effects, Pneumonia etiology, Inhalation Exposure adverse effects, Inhalation Exposure analysis
- Abstract
Background: Exposure to household air pollution is a risk factor for severe pneumonia. The effect of replacing biomass cookstoves with liquefied petroleum gas (LPG) cookstoves on the incidence of severe infant pneumonia is uncertain., Methods: We conducted a randomized, controlled trial involving pregnant women 18 to 34 years of age and between 9 to less than 20 weeks' gestation in India, Guatemala, Peru, and Rwanda from May 2018 through September 2021. The women were assigned to cook with unvented LPG stoves and fuel (intervention group) or to continue cooking with biomass fuel (control group). In each trial group, we monitored adherence to the use of the assigned cookstove and measured 24-hour personal exposure to fine particulate matter (particles with an aerodynamic diameter of ≤2.5 μm [PM
2.5 ]) in the women and their offspring. The trial had four primary outcomes; the primary outcome for which data are presented in the current report was severe pneumonia in the first year of life, as identified through facility surveillance or on verbal autopsy., Results: Among 3200 pregnant women who had undergone randomization, 3195 remained eligible and gave birth to 3061 infants (1536 in the intervention group and 1525 in the control group). High uptake of the intervention led to a reduction in personal exposure to PM2.5 among the children, with a median exposure of 24.2 μg per cubic meter (interquartile range, 17.8 to 36.4) in the intervention group and 66.0 μg per cubic meter (interquartile range, 35.2 to 132.0) in the control group. A total of 175 episodes of severe pneumonia were identified during the first year of life, with an incidence of 5.67 cases per 100 child-years (95% confidence interval [CI], 4.55 to 7.07) in the intervention group and 6.06 cases per 100 child-years (95% CI, 4.81 to 7.62) in the control group (incidence rate ratio, 0.96; 98.75% CI, 0.64 to 1.44; P = 0.81). No severe adverse events were reported to be associated with the intervention, as determined by the trial investigators., Conclusions: The incidence of severe pneumonia among infants did not differ significantly between those whose mothers were assigned to cook with LPG stoves and fuel and those whose mothers were assigned to continue cooking with biomass stoves. (Funded by the National Institutes of Health and the Bill and Melinda Gates Foundation; HAPIN ClinicalTrials.gov number, NCT02944682.)., (Copyright © 2024 Massachusetts Medical Society.)- Published
- 2024
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39. Effects of Cooking with Liquefied Petroleum Gas or Biomass on Stunting in Infants.
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Checkley W, Thompson LM, Sinharoy SS, Hossen S, Moulton LH, Chang HH, Waller L, Steenland K, Rosa G, Mukeshimana A, Ndagijimana F, McCracken JP, Díaz-Artiga A, Balakrishnan K, Garg SS, Thangavel G, Aravindalochanan V, Hartinger SM, Chiang M, Kirby MA, Papageorghiou AT, Ramakrishnan U, Williams KN, Nicolaou L, Johnson M, Pillarisetti A, Rosenthal J, Underhill LJ, Wang J, Jabbarzadeh S, Chen Y, Dávila-Román VG, Naeher LP, McCollum ED, Peel JL, and Clasen TF
- Subjects
- Infant, Female, Humans, Pregnancy, Biomass, Particulate Matter adverse effects, Particulate Matter analysis, Cooking, Growth Disorders epidemiology, Growth Disorders etiology, Growth Disorders prevention & control, Air Pollution, Indoor adverse effects, Air Pollution, Indoor analysis, Petroleum
- Abstract
Background: Household air pollution is associated with stunted growth in infants. Whether the replacement of biomass fuel (e.g., wood, dung, or agricultural crop waste) with liquefied petroleum gas (LPG) for cooking can reduce the risk of stunting is unknown., Methods: We conducted a randomized trial involving 3200 pregnant women 18 to 34 years of age in four low- and middle-income countries. Women at 9 to less than 20 weeks' gestation were randomly assigned to use a free LPG cookstove with continuous free fuel delivery for 18 months (intervention group) or to continue using a biomass cookstove (control group). The length of each infant was measured at 12 months of age, and personal exposures to fine particulate matter (particles with an aerodynamic diameter of ≤2.5 μm) were monitored starting at pregnancy and continuing until the infants were 1 year of age. The primary outcome for which data are presented in the current report - stunting (defined as a length-for-age z score that was more than two standard deviations below the median of a growth standard) at 12 months of age - was one of four primary outcomes of the trial. Intention-to-treat analyses were performed to estimate the relative risk of stunting., Results: Adherence to the intervention was high, and the intervention resulted in lower prenatal and postnatal 24-hour personal exposures to fine particulate matter than the control (mean prenatal exposure, 35.0 μg per cubic meter vs. 103.3 μg per cubic meter; mean postnatal exposure, 37.9 μg per cubic meter vs. 109.2 μg per cubic meter). Among 3061 live births, 1171 (76.2%) of the 1536 infants born to women in the intervention group and 1186 (77.8%) of the 1525 infants born to women in the control group had a valid length measurement at 12 months of age. Stunting occurred in 321 of the 1171 infants included in the analysis (27.4%) of the infants born to women in the intervention group and in 299 of the 1186 infants included in the analysis (25.2%) of those born to women in the control group (relative risk, 1.10; 98.75% confidence interval, 0.94 to 1.29; P = 0.12)., Conclusions: An intervention strategy starting in pregnancy and aimed at mitigating household air pollution by replacing biomass fuel with LPG for cooking did not reduce the risk of stunting in infants. (Funded by the National Institutes of Health and the Bill and Melinda Gates Foundation; HAPIN ClinicalTrials.gov number, NCT02944682.)., (Copyright © 2024 Massachusetts Medical Society.)
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- 2024
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40. Microplastic contamination in commercially packaged edible seaweeds and exposure of the ethnic minority and local population in Mexico.
- Author
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Kutralam-Muniasamy G, Shruti VC, and Pérez-Guevara F
- Subjects
- Humans, Plastics, Edible Seaweeds, Mexico, Ethnic and Racial Minorities, Ethnicity, Environmental Monitoring methods, Minority Groups, Polymers, Microplastics, Water Pollutants, Chemical analysis
- Abstract
Diet is an important pathway for microplastic exposure. This study examined distinct edible seaweed products sold at ethnic food stores in Mexico for microplastic contamination, as well as the exposure of the Asian ethnic minority and local population to microplastics. Microplastics were extracted from seaweed samples using a wet oxide digestion with hydrogen peroxide followed by zinc chloride density separation. They were subsequently detected, quantified, and the polymer type was determined via microscopic inspection and Fourier transform infrared spectroscopy. Microplastic contamination was detected in all samples, with an average abundance of 24.0 ± 9.4 items g
-1 . Fibrous-shaped (61 %) and non-colored (57 %) microplastics were prevalent. Microplastics with sizes smaller than 0.2 mm prevailed (60 %), and they have the potential to penetrate gut barriers and endanger human health. Polymers identified consisted of polyethylene-polypropylene, polyamide, cellophane, rayon, and polyethylene terephthalate. According to pollution load index values, seaweed samples were minimally contaminated with microplastics, with values ranging between 3.7 and 6.0. The estimated yearly intake of microplastic from seaweed consumption by the South Korean and Chinese populations in Mexico was 5.8 × 104 ± 2.3 × 104 and 5.7 × 104 ± 4.9 × 104 , respectively. This study's findings highlight the importance of improved control measures for minimizing microplastics in foods for export., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2024
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41. Population Structure and Genetic Diversity Analyses Provide New Insight into the Endemic Species Aster spathulifolius Maxim. and Its Evolutionary History.
- Author
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Raman G, Choi KS, and Park S
- Abstract
Aster spathulifolius , an ecologically significant plant species native to the coastal regions of Korea and Japan, remains understudied in terms of its genetic structure and evolutionary history. In this study, we employed four chloroplast markers and the nuclear ITS region from 15 populations of A . spathulifolius from both Korea and Japan, including their islands, to unravel the spatial genetic structure, differentiation, gene flow, phylogenetic, and biogeographical relationships. Analysis based on multiple methods identified a low level of genetic diversity, genetic differentiation and gene flow among A . spathulifolius populations. Network analysis and principal coordinates analysis showed that 15 populations could be divided into two groups: mainland and island. Furthermore, UPGMA, neighbor-net, maximum-likelihood and Bayesian inference-based phylogenetic tree confirmed that these populations formed two distinct clades. Therefore, the island populations might be treated as A . spathulifolius populations rather than A . oharai populations. Divergence time analysis estimated the divergence of A. spathulifolius lineages approximately 23.09 million years ago, while ancestral area reconstruction analysis suggested Korea as the potential origin, conflicting with alternative scenarios. These findings contribute to a comprehensive understanding of the evolutionary history, genetic structure, and adaptive strategies of A. spathulifolius in coastal environments. Our study challenges previous assumptions and underscores the necessity for further population studies to elucidate the intricate dynamics of this distinctive plant species.
- Published
- 2023
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42. Do microbial decomposers find micro- and nanoplastics to be harmful stressors in the aquatic environment? A systematic review of in vitro toxicological research.
- Author
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Shruti VC, Kutralam-Muniasamy G, and Pérez-Guevara F
- Abstract
Microbial decomposers (bacteria and fungi) are likely to interact with plastic particles introduced into natural systems, particularly micro- and nanoplastics (MNPs), exposing them to a variety of risks. In vitro testing has proven to be an accessible and viable method for gaining insights into how microbial decomposers behave individually and systemically toward MNPs. Recent advances have enhanced our understanding of MNP interactions with organisms, revealing the molecular foundations of adaptive responses as well as the biological impact and potential risks to MNPs. Despite widespread attention, this topic has not yet been reviewed. Here, we conducted a systematic review of the available research to critically assess and highlight the most recent advances in two major areas: (1) methods for in vitro evaluation of environmentally relevant microbial decomposers to MNPs; and (2) current understanding of the underlying toxicity mechanisms gained from in vitro assessments. We also addressed the key considerations throughout and proposed available opportunities in the field. Our analysis revealed that MNPs' toxicity has been studied in vitro either alone or in combination with other contaminants (e.g., antibiotics and metallic nanoparticles), with Escherichia coli and polystyrene particles receiving the most attention. Moreover, there were methodological differences in terms of MNP size, shape, polymer, surface characteristics, exposure period, and concentrations. A combination of methods, including growth-viability tests, biochemical assays, and omics profiling (metabolomics and transcriptomics), were employed to detect the effects of MNP exposure and explain its toxicity mechanism. The current literature suggests that the impacts of MNPs on microbial decomposers include alterations in the antioxidative system, gene expression levels and cell-membrane permeability and oxidative damage, all of which can be further influenced by MNPs interaction with other contaminants. This review will thus provide critical insights and up-to-date knowledge to assist novices and experts in promoting advancements and research., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2023
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43. Epidemiology and molecular characterization of Theileria annulata in ticks collected from cattle in the central part of Tamil Nadu, India.
- Author
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Velusamy R, Ponnudurai G, Alagesan A, Rani N, Kolte SW, and Rubinibala B
- Subjects
- Cattle, Animals, India epidemiology, Theileria annulata genetics, Tick Infestations epidemiology, Tick Infestations veterinary, Ixodidae, Rhipicephalus, Cattle Diseases epidemiology, Theileriasis epidemiology
- Abstract
Tick-borne diseases are the most common in cattle in the tropical and subtropical regions of India and lead to substantial economic losses to small and marginal farmers. This study aimed to identify the diverse species of ticks infesting cattle in the central part of Tamil Nadu, India, and to assess the prevalence of Theileria annulata infection in various species of ticks through PCR. Out of 123 cross-bred and 105 native breed cattle examined for tick infestation, 40 (18%) and 29 (12.7%) cattle were infested with Ixodid ticks, respectively. The most prevalent tick species identified was Rhipicephalus microplus (n=589), followed by Hyalomma anatolicum (n=532), Hyalomma marginatum (n=145), Haemaphysalis intermedia (n=79), and Rhipicephalus haemophysaloides (n=1) found in the study area. The prevalence and intensity of the tick infestation were found to be higher in cross-bred (71.04%) than native breed cattle (28.96%), and there was no significant difference between the studied breeds (chi-square value =24; df =20; p value =0.24) was observed. However, a significant difference in the H. anatolicum tick infestation was observed between the Cauvery Delta (14.30%) and the North-Western (20%) zones of Tamil Nadu (p<0.05). DNA fragments of 193 bp derived from 18S rRNA gene sequences of T. annulata were amplified using species-specific primers. Of these, 16 out of 37 (43.2%) and 10 out of 39 (29%) pooled samples of H. anatolicum and 4 out of 18 (22.2%) and 1 out of 5 (20%) pooled samples of H. marginatum were found positive for T. annulata from the Cauvery Delta and North-Western zones, respectively. R. microplus, H. intermedia, and R. haemaphysaloides from these regions were negative. These findings confirm that H. anatolicum (52.17%) is the predominant vector for T.annulata rather than H. marginatum (18.84%), and the PCR is a useful method of determining the infection rates in ticks collected from animals carrying low levels of T. annulata piroplasms., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2023
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44. A new species of the genus Lichenomima Enderlein, 1910 (Psocodea: Psocoptera: Myopsocidae) from India.
- Author
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Ramesh G, Babu R, and Subramanian KA
- Subjects
- Animals, India, Insecta, Neoptera, Forests
- Abstract
Lichenomima aldretei n. sp. is described and depicted here and collected from the forests of the Western Ghats of Tamil Nadu, India, and is distinguished by a distinctive apical lobe in the hypandrium.
- Published
- 2023
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45. Extensive characterization of 28 complete chloroplast genomes of Hydrangea species: A perspective view of their organization and phylogenetic and evolutionary relationships.
- Author
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Raman G, Choi KS, Lee EM, Morden CW, Shim H, Kang JS, Yang TJ, and Park S
- Abstract
The tribe Hydrangeeae displays a unique, distinctive disjunct distribution encompassing East Asia, North America and Hawaii. Despite its complex trait variations and polyphyletic nature, comprehensive phylogenomic and biogeographical studies on this tribe have been lacking. To address this gap, we sequenced and characterized 28 plastomes of Hydrangeeae. Our study highlights the highly conserved nature of Hydrangeaceae chloroplast (cp) genomes in terms of gene content and arrangement. Notably, synapomorphic characteristics of tandem repeats in the conserved domain of accD were observed in the Macrophyllae , Chinenses , and Dichroa sections within the Hydrangeeae tribe. Additionally, we found lower expression of accD in these sections using structure prediction and quantitative real-time PCR analysis. Phylogenomic analyses revealed the subdivision of the Hydrangeeae tribe into two clades with robust support values. Consistent with polyphyletic relationships, sect. Broussaisia was identified as the basal group in the tribe Hydrangeeae. Our study also provides insights into the phylogenetic relationships of Hydrangea petiolaris in the Jeju and Ulleung Island populations, suggesting the need for further studies with more samples and molecular data. Divergence time estimation and biogeographical analyses suggested that the common ancestors of the tribe Hydrangeeae likely originated from North America and East Asia during the Paleocene period via the Bering Land Bridge, potentially facilitating migration within the tribe between these regions. In conclusion, this study enhances our understanding of the evolutionary history and biogeography of the tribe Hydrangeeae, shedding light on the dispersal patterns and origins of this intriguing plant group with its unique disjunct distribution., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 The Authors.)
- Published
- 2023
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46. Factors Associated with Otitis Media Among Pediatrics in Two Government Hospitals in Arba Minch, Southern Ethiopia.
- Author
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Henok EA, Manilal A, Oumer Y, Keyta G, Birru M, Desta Araya B, Aklilu A, Alahmadi RM, Raman G, and Idhayadhulla A
- Abstract
Background: Bacterial otitis media (OM) is a common infection among the pediatric community worldwide and is the first reason for prescribing antibiotics in pediatric practices. However, if not promptly diagnosed and appropriately treated, it may persist and cause severe intra- and extra-cranial hard-to-cure complications. Hence, knowing the magnitude, etiology, and antibiotic susceptibility profile is very important for the proper management., Methods: A cross-sectional study was carried out in 312 pediatrics (1 to 18 years) attending the Ear Nose Throat outpatient departments of the two title hospitals from 25 February to 30th August 2022. Patients were chosen through a systematic random sampling method. Data were obtained by means of a semi-structured questionnaire. Samples were collected to identify the causative bacteria as per microbiological guidelines. The antibiotic susceptibility test was done according to the Kirby-Bauer disc diffusion; SPSS version 25 was used for the analysis., Results: The overall prevalence of otitis media was 67.3% (n=210); CSOM showed a slight preponderance (n=107) Gram-negative bacteria and Gram-positive bacteria were present in 59.8% (n=137) and 40.1% (n=92), respectively. Otitis media was predominantly caused by S. aureus (n=52, 56.5%), followed by Proteus spp. (n=33, 24%). Gram-negative bacteria were highly resistant to co-trimoxazole, amoxicillin-clavulanic acid, piperacillin, and tetracycline, whereas their positive counterparts were considerably penicillin and co-trimoxazole resistant. Overall, 61.5 and 19.2% of the isolates were MDR and XDR, respectively. MRSA, MR-CoNs, and VRE were 38.4% (n=20), 17.1% (n=5), and 58.3% (n=12), respectively; 19.7% (n=25) of Gram-negative bacteria produced ESBL, and 7% (n=9) were carbapenem-resistant. History of exposure to loud noise [AOR=3.4; CI=1.14-10.23; P-value=0.028] and family history of smoking at home [AOR=2.9; CI=1.18-7.25; P-value=0.020] have the greatest odds of otitis media., Conclusion: Overall, the prevalence of otitis media is showing an upward trend, and MDR among bacterial isolates is increasing alarmingly., Competing Interests: The authors report no conflicts of interest in this work., (© 2023 Henok et al.)
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- 2023
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47. Consumption of commercially sold dried fish snack "Charales" contaminated with microplastics in Mexico.
- Author
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Kutralam-Muniasamy G, Shruti VC, Pérez-Guevara F, Roy PD, and Martínez IE
- Subjects
- Humans, Animals, Plastics analysis, Mexico, Snacks, Environmental Monitoring, Fishes, Microplastics analysis, Water Pollutants, Chemical analysis
- Abstract
Inadvertent human exposure to microplastics by the ingestion of microplastic-contaminated processed foods poses health risks and new preventative issues; nevertheless, investigations analyzing microplastic occurrences in commercially dried fish for direct human consumption are scarce. This study assessed the abundance and characteristics of microplastics in 25 commercially sold dried fish products (4 supermarkets, 3 street vendors, and 18 traditional agri-product farmers' markets) from two widely consumed and commercially important Chirostoma species (C. jordani and C. patzcuaro) in Mexico. Microplastics were detected in all the samples examined, with abundances ranging from 4.00 ± 0.94 to 55.33 ± 9.43 items g
-1 . C. jordani dried fish samples had higher mean microplastic abundance (15.17 ± 5.90 items g-1 ) than the C. patzcuaro dried fish samples (7.82 ± 2.90 items g-1 ); nevertheless, there was no statistically significant difference in microplastic concentrations between the samples. The most prevalent type of microplastic was fiber (67.55%), followed by fragment (29.18%), film (3.00%), and sphere (0.27%). Non-colored microplastics (67.35%) predominated, while microplastic sizes varied from 24 to 1670 μm, with sizes less than 500 μm (84%) being the most common. ATR-FTIR analysis revealed polyester, acrylonitrile butadiene styrene, polyvinyl alcohol, ethylene-propylene copolymer, nylon-6 (3), cellophane, and viscose in the dried fish samples. Overall, this study's findings are the first in Latin America to demonstrate microplastic contamination in dried fish for human consumption, underscoring the need for developing countermeasures to prevent plastic pollution in fish-caught regions and reduce the risks of human exposure to these micropollutants., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)- Published
- 2023
- Full Text
- View/download PDF
48. Fidelity and adherence to a liquefied petroleum gas stove and fuel intervention: The multi-country Household Air Pollution Intervention Network (HAPIN) trial.
- Author
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Williams KN, Quinn A, North H, Wang J, Pillarisetti A, Thompson LM, Díaz-Artiga A, Balakrishnan K, Thangavel G, Rosa G, Ndagijimana F, Underhill LJ, Kirby MA, Puzzolo E, Hossen S, Waller LA, Peel JL, Rosenthal JP, Clasen TF, Harvey SA, and Checkley W
- Subjects
- Female, Humans, Infant, Pregnancy, Pandemics, Research Design, Air Pollution, COVID-19, Petroleum
- Abstract
Background: Reducing household air pollution (HAP) to levels associated with health benefits requires nearly exclusive use of clean cooking fuels and abandonment of traditional biomass fuels., Methods: The Household Air Pollution Intervention Network (HAPIN) trial randomized 3,195 pregnant women in Guatemala, India, Peru, and Rwanda to receive a liquefied petroleum gas (LPG) stove intervention (n = 1,590), with controls expected to continue cooking with biomass fuels (n = 1,605). We assessed fidelity to intervention implementation and participant adherence to the intervention starting in pregnancy through the infant's first birthday using fuel delivery and repair records, surveys, observations, and temperature-logging stove use monitors (SUMs)., Results: Fidelity and adherence to the HAPIN intervention were high. Median time required to refill LPG cylinders was 1 day (interquartile range 0-2). Although 26% (n = 410) of intervention participants reported running out of LPG at some point, the number of times was low (median: 1 day [Q1, Q3: 1, 2]) and mostly limited to the first four months of the COVID-19 pandemic. Most repairs were completed on the same day as problems were reported. Traditional stove use was observed in only 3% of observation visits, and 89% of these observations were followed up with behavioral reinforcement. According to SUMs data, intervention households used their traditional stove a median of 0.4% of all monitored days, and 81% used the traditional stove < 1 day per month. Traditional stove use was slightly higher post-COVID-19 (detected on a median [Q1, Q3] of 0.0% [0.0%, 3.4%] of days) than pre-COVID-19 (0.0% [0.0%, 1.6%] of days). There was no significant difference in intervention adherence pre- and post-birth., Conclusion: Free stoves and an unlimited supply of LPG fuel delivered to participating homes combined with timely repairs, behavioral messaging, and comprehensive stove use monitoring contributed to high intervention fidelity and near-exclusive LPG use within the HAPIN trial., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
- Full Text
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49. Comparative Analysis and Identification of Terpene Synthase Genes in Convallaria keiskei Leaf, Flower and Root Using RNA-Sequencing Profiling.
- Author
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Claude SJ, Raman G, and Park SJ
- Abstract
The 'Lilly of the Valley' species, Convallaria , is renowned for its fragrant white flowers and distinctive fresh and green floral scent, attributed to a rich composition of volatile organic compounds (VOCs). However, the molecular mechanisms underlying the biosynthesis of this floral scent remain poorly understood due to a lack of transcriptomic data. In this study, we conducted the first comparative transcriptome analysis of C . keiskei , encompassing the leaf, flower, and root tissues. Our aim was to investigate the terpene synthase (TPS) genes and differential gene expression (DEG) patterns associated with essential oil biosynthesis. Through de novo assembly, we generated a substantial number of unigenes, with the highest count in the root (146,550), followed by the flower (116,434) and the leaf (72,044). Among the identified unigenes, we focused on fifteen putative ckTPS genes, which are involved in the synthesis of mono- and sesquiterpenes, the key aromatic compounds responsible for the essential oil biosynthesis in C . keiskei . The expression of these genes was validated using quantitative PCR analysis. Both DEG and qPCR analyses revealed the presence of ckTPS genes in the flower transcriptome, responsible for the synthesis of various compounds such as geraniol, germacrene, kaurene, linalool, nerolidol, trans-ocimene and valencene. The leaf transcriptome exhibited genes related to the biosynthesis of kaurene and trans-ocimene. In the root, the identified unigenes were associated with synthesizing kaurene, trans-ocimene and valencene. Both analyses indicated that the genes involved in mono- and sesquiterpene biosynthesis are more highly expressed in the flower compared to the leaf and root. This comprehensive study provides valuable resources for future investigations aiming to unravel the essential oil-biosynthesis-related genes in the Convallaria genus.
- Published
- 2023
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50. Highly selective CO 2 sensing response of lanthanum oxide nanoparticle electrodes at ambient temperature.
- Author
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Eswaran A, Thirumalainambi M, Subramaniam R, and Annadurai G
- Abstract
Lanthanum oxide nanoparticles (La
2 O3 NPs) are attractive rare earth metal oxides because of their applications in optical devices, catalysts, dielectric layers, and sensors. Herein, we report room temperature operative carbon dioxide gas sensing electrodes developed by a simple sonication assisted hydrothermal method. The physiochemical, morphological and gas-sensing properties of the prepared nanoparticles were studied systematically and their successful preparation was confirmed with the absence of impurities and high selectivity towards CO2 . The fabricated sensor showed a high sensitivity of 40% towards CO2 at 50 ppm, and it can detect concentrations of up to 5 ppm with a quick response time of 6 s and recovery of 5 s. The electrode demonstrated long-term stability of 95% for 50 days when tested with an interval of 10 days. This simple and cost-effective method shows great potential for fabricating room temperature CO2 gas sensors., Competing Interests: The authors declare that there are no conflicts of interest regarding the publication of this paper., (This journal is © The Royal Society of Chemistry.)- Published
- 2023
- Full Text
- View/download PDF
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