Search

Your search keyword '"Gurney, Susan M. R."' showing total 14 results
Start Over Author "Gurney, Susan M. R."
14 results on '"Gurney, Susan M. R."'

1. Models of classroom assessment for course-based research experiences

Author

Hanauer, David I., primary, Zhang, Tong, additional, Graham, Mark J., additional, Adams, Sandra D., additional, Ahumada-Santos, Yesmi Patricia, additional, Alvey, Richard M., additional, Antunes, Mauricio S., additional, Ayuk, Mary A., additional, Elena Báez-Flores, María, additional, Bancroft, Christa T., additional, Bates, Tonya C., additional, Bechman, Meghan J., additional, Behr, Elizabeth, additional, Beyer, Andrea R., additional, Bortz, Rebecca L., additional, Bowder, Dane M., additional, Briggs, Laura A., additional, Brown-Kennerly, Victoria, additional, Buckholt, Michael A., additional, Bullock, Sharon K., additional, Butela, Kristen A., additional, Byrum, Christine A., additional, Caruso, Steven M., additional, Chia, Catherine P., additional, Chong, Rebecca A., additional, Chung, Hui-Min, additional, Clase, Kari L., additional, Coleman, Sean T., additional, Parks Collins, D., additional, Conant, Stephanie B., additional, Condon, Brett M., additional, Connerly, Pamela L., additional, Connors, Bernadette J., additional, Cook-Easterwood, Jennifer E., additional, Crump, Katie E., additional, D’Elia, Tom, additional, Dennis, Megan K., additional, DeVeaux, Linda C., additional, Diacovich, Lautaro, additional, Duffy, Iain, additional, Edgington, Nicholas P., additional, Edwards, Dustin C., additional, Egwuatu, Tenny O. G., additional, Eivazova, Elvira R., additional, Fallest-Strobl, Patricia C., additional, Fillman, Christy L., additional, Findley, Ann M., additional, Fisher, Emily, additional, Fisher, Matthew R., additional, Fogarty, Marie P., additional, Freise, Amanda C., additional, Frost, Victoria J., additional, Gainey, Maria D., additional, Garcia Costas, Amaya M., additional, Garza, Atenea A., additional, Gavin, Hannah E., additional, Ghittoni, Raffaella, additional, Gibb, Bryan, additional, Golebiewska, Urszula P., additional, Grinath, Anna S., additional, Gurney, Susan M. R., additional, Hare, Rebekah F., additional, Heninger, Steven G., additional, Hinz, John M., additional, Hughes, Lee E., additional, Jayachandran, Pradeepa, additional, Johnson, Kristen C., additional, Johnson, Allison A., additional, Kanther, Michelle, additional, Kenna, Margaret, additional, Kirkpatrick, Bridgette L., additional, Klyczek, Karen K., additional, Kohl, Kathryn P., additional, Kuchka, Michael, additional, LaPeruta, Amber J., additional, Lee-Soety, Julia Y., additional, Lewis, Lynn O., additional, Lindberg, Heather M., additional, Madden, Jaclyn A., additional, Markov, Sergei A., additional, Mastropaolo, Matthew D., additional, Mathur, Vinayak, additional, McClory, Sean P., additional, Merkhofer, Evan C., additional, Merkle, Julie A., additional, Michael, Scott F., additional, Mitchell, Jon C., additional, Molloy, Sally D., additional, Monti, Denise L., additional, Mussi, María Alejandra, additional, Nance, Holly, additional, Nieto-Fernandez, Fernando E., additional, Nissen, Jillian C., additional, Nsa, Imade Y., additional, O’Donnell, Mary G., additional, Page, Shallee T., additional, Panagakis, Andrea, additional, Parra-Unda, Jesús Ricardo, additional, Pelletier, Tara A., additional, Perez Morales, Tiara G., additional, Peters, Nick T., additional, Phuntumart, Vipaporn, additional, Pollenz, Richard S., additional, Preuss, Mary L., additional, Puthoff, David P., additional, Raifu, Muideen K., additional, Reyna, Nathan S., additional, Rinehart, Claire A., additional, Rocheleau, Jessica M., additional, Rossier, Ombeline, additional, Rudner, Adam D., additional, Rueschhoff, Elizabeth E., additional, Ryan, Amy, additional, Saha, Sanghamitra, additional, Shaffer, Christopher D., additional, Smith, Mary Ann V., additional, Sprenkle, Amy B., additional, Strong, Christy L., additional, Sunnen, C. Nicole, additional, Tarbox, Brian P., additional, Temple, Louise, additional, Thoemke, Kara R., additional, Thomas, Michael A., additional, Tobiason, Deborah M., additional, Tolsma, Sara S., additional, Garcia, Julie Torruellas, additional, Valentine, Megan S., additional, Vazquez, Edwin, additional, Ward, Robert E., additional, Ward, Catherine M., additional, Ware, Vassie C., additional, Warner, Marcie H., additional, Washington, Jacqueline M., additional, Westholm, Daniel E., additional, Wheaton, Keith A., additional, Wilkes, Beth M., additional, Williams, Elizabeth C., additional, Biederman, William H., additional, Cresawn, Steven G., additional, Heller, Danielle M., additional, Jacobs-Sera, Deborah, additional, Hatfull, Graham F., additional, Asai, David J., additional, and Sivanathan, Viknesh, additional

Published
2023
Full Text
View/download PDF

2. Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

Author

Ramsey, Jolene, primary, McIntosh, Brenley, additional, Renfro, Daniel, additional, Aleksander, Suzanne A., additional, LaBonte, Sandra, additional, Ross, Curtis, additional, Zweifel, Adrienne E., additional, Liles, Nathan, additional, Farrar, Shabnam, additional, Gill, Jason J., additional, Erill, Ivan, additional, Ades, Sarah, additional, Berardini, Tanya Z., additional, Bennett, Jennifer A., additional, Brady, Siobhan, additional, Britton, Robert, additional, Carbon, Seth, additional, Caruso, Steven M., additional, Clements, Dave, additional, Dalia, Ritu, additional, Defelice, Meredith, additional, Doyle, Erin L., additional, Friedberg, Iddo, additional, Gurney, Susan M. R., additional, Hughes, Lee, additional, Johnson, Allison, additional, Kowalski, Jason M., additional, Li, Donghui, additional, Lovering, Ruth C., additional, Mans, Tamara L., additional, McCarthy, Fiona, additional, Moore, Sean D., additional, Murphy, Rebecca, additional, Paustian, Timothy D., additional, Perdue, Sarah, additional, Peterson, Celeste N., additional, Prüß, Birgit M., additional, Saha, Margaret S., additional, Sheehy, Robert R., additional, Tansey, John T., additional, Temple, Louise, additional, Thorman, Alexander William, additional, Trevino, Saul, additional, Vollmer, Amy Cheng, additional, Walbot, Virginia, additional, Willey, Joanne, additional, Siegele, Deborah A., additional, and Hu, James C., additional

Published
2021
Full Text
View/download PDF

4. Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

Author

Ramsey, Jolene, McIntosh, Brenley, Renfro, Daniel, Aleksander, Suzanne A., LaBonte, Sandra, Ross, Curtis, Zweifel, Adrienne E., Liles, Nathan, Farrar, Shabnam, Gill, Jason J., Erill, Ivan, Ades, Sarah, Berardini, Tanya Z., Bennett, Jennifer A., Brady, Siobhan, Britton, Robert, Carbon, Seth, Caruso, Steven M., Clements, Dave, Dalia, Ritu, Defelice, Meredith, Doyle, Erin L., Friedberg, Iddo, Gurney, Susan M. R., Hughes, Lee, Johnson, Allison, Kowalski, Jason M., Li, Donghui, Lovering, Ruth C., Mans, Tamara L., McCarthy, Fiona, Moore, Sean D., Murphy, Rebecca, Paustian, Timothy D., Perdue, Sarah, Peterson, Celeste N., Pruss, Birgit M., Saha, Margaret S., Sheehy, Robert R., Tansey, John T., Temple, Louise, Thorman, Alexander William, Trevino, Saul, Vollmer, Amy Cheng, Walbot, Virginia, Willey, Joanne, Siegele, Deborah A., Hu, James C., Ramsey, Jolene, McIntosh, Brenley, Renfro, Daniel, Aleksander, Suzanne A., LaBonte, Sandra, Ross, Curtis, Zweifel, Adrienne E., Liles, Nathan, Farrar, Shabnam, Gill, Jason J., Erill, Ivan, Ades, Sarah, Berardini, Tanya Z., Bennett, Jennifer A., Brady, Siobhan, Britton, Robert, Carbon, Seth, Caruso, Steven M., Clements, Dave, Dalia, Ritu, Defelice, Meredith, Doyle, Erin L., Friedberg, Iddo, Gurney, Susan M. R., Hughes, Lee, Johnson, Allison, Kowalski, Jason M., Li, Donghui, Lovering, Ruth C., Mans, Tamara L., McCarthy, Fiona, Moore, Sean D., Murphy, Rebecca, Paustian, Timothy D., Perdue, Sarah, Peterson, Celeste N., Pruss, Birgit M., Saha, Margaret S., Sheehy, Robert R., Tansey, John T., Temple, Louise, Thorman, Alexander William, Trevino, Saul, Vollmer, Amy Cheng, Walbot, Virginia, Willey, Joanne, Siegele, Deborah A., and Hu, James C.

Abstract

Author summary The primary scientific literature catalogs the results from publicly funded scientific research about gene function in human-readable format. Information captured from those studies in a widely adopted, machine-readable standard format comes in the form of Gene Ontology (GO) annotations about gene functions from all domains of life. Manual annotations based on inferences directly from the scientific literature, including the evidence used to make such inferences, represent the best return on investment by improving data accessibility across the biological sciences and allowing novel insights between evolutionarily related organisms. To supplement professional curation, our Community Assessment of Community Annotation with Ontologies (CACAO) project enabled annotation of the scientific literature by community annotators, in this case undergraduates, which resulted in the contribution of thousands of unique, validated entries to public resources. Importantly, the annotations described here initiated by nonexperts often deal with topics not typically covered by the experts. These annotations are now being used by scientists worldwide in their research efforts. Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying gene function, especially within model organisms. Unprecedented expansion of the scientific literature and validation of the predicted proteins have increased both data value and the challenges of keeping pace. Capturing literature-based functional annotations is limited by the ability of biocurators to handle the massive and rapidly growing scientific literature. Within the community-oriented wiki framework for GO annotation called the Gene Ontology Normal Usage Tracking System (GONUTS), we describe an approach to expand biocuration through crowdso

Published
2021
Full Text
View/download PDF

5. Genomic diversity of bacteriophages infecting Microbacterium spp

Author

Jacobs-Sera, Deborah, primary, Abad, Lawrence A., additional, Alvey, Richard M., additional, Anders, Kirk R., additional, Aull, Haley G., additional, Bhalla, Suparna S., additional, Blumer, Lawrence S., additional, Bollivar, David W., additional, Bonilla, J. Alfred, additional, Butela, Kristen A., additional, Coomans, Roy J., additional, Cresawn, Steven G., additional, D'Elia, Tom, additional, Diaz, Arturo, additional, Divens, Ashley M., additional, Edgington, Nicholas P., additional, Frederick, Gregory D., additional, Gainey, Maria D., additional, Garlena, Rebecca A., additional, Grant, Kenneth W., additional, Gurney, Susan M. R., additional, Hendrickson, Heather L., additional, Hughes, Lee E., additional, Kenna, Margaret A., additional, Klyczek, Karen K., additional, Kotturi, Hari, additional, Mavrich, Travis N., additional, McKinney, Angela L., additional, Merkhofer, Evan C., additional, Moberg Parker, Jordan, additional, Molloy, Sally D., additional, Monti, Denise L., additional, Pape-Zambito, Dana A., additional, Pollenz, Richard S., additional, Pope, Welkin H., additional, Reyna, Nathan S., additional, Rinehart, Claire A., additional, Russell, Daniel A., additional, Shaffer, Christopher D., additional, Sivanathan, Viknesh, additional, Stoner, Ty H., additional, Stukey, Joseph, additional, Sunnen, C. Nicole, additional, Tolsma, Sara S., additional, Tsourkas, Philippos K., additional, Wallen, Jamie R., additional, Ware, Vassie C., additional, Warner, Marcie H., additional, Washington, Jacqueline M., additional, Westover, Kristi M., additional, Whitefleet-Smith, JoAnn L., additional, Wiersma-Koch, Helen I., additional, Williams, Daniel C., additional, Zack, Kira M., additional, and Hatfull, Graham F., additional

Published
2020
Full Text
View/download PDF

7. Complete Genome Sequence of Cluster J Mycobacteriophage Superphikiman

Author

Pradhan, Pratik, primary, Nako, Sprikena, additional, Tran, Trinh, additional, Aluri, Lavanya S., additional, Anandarajan, Dharman, additional, Betini, Niteesha, additional, Bhatt, Shivangi D., additional, Chengalvala, Swetha, additional, Cox, Nicole E., additional, Delvadia, Bela P., additional, Desai, Aishwary S., additional, Devaney, Andrew M., additional, Doyle, Brenna K., additional, Edgerton, Arden O., additional, Erlich, Matthew C., additional, Fitzpatrick, Kevin C., additional, Gajjar, Esha A., additional, Ganguly, Anjali, additional, Gill, Ramnik S., additional, Good, Pauline M., additional, Gupta, Nishtha, additional, Haddad, Leila M., additional, Han, Esther J., additional, Jain, Shelby, additional, Jiang, Andrew, additional, Jurgielewicz, Andrew D., additional, Kainth, Devneet K., additional, Karam, Jawhara M., additional, Kodavatiganti, Mallika, additional, Kriete, Sinja J., additional, MacDonald, Catherine E., additional, Maret, Josh P., additional, Mathew, Ashley E., additional, Natrajan, Maanasa, additional, Nishu, Nusrat M., additional, Patel, Nirali, additional, Patel, Pooja D., additional, Patel, Shivani, additional, Patra, Kaustav, additional, Rai, Karima K., additional, Sarkar, Arghyadeep, additional, Shah, Priyanka, additional, Tata, Ravi K., additional, Tawfik, Andrew H., additional, Thuremella, Bhavya T., additional, Toma, Justina, additional, Veera, Shika, additional, Vemulapalli, Vamsee K., additional, Vidas, Trevor V., additional, Vieira, Katy S., additional, Vijayakumar, Gayathri, additional, Walor, Tru A., additional, White, Clara R., additional, Wong, Brianna M., additional, Zhao, Shu L., additional, Bollivar, David W., additional, McDonald, Matthew T., additional, Dalia, Ritu R., additional, Smith, Kevin P. W., additional, Little, Joy L., additional, and Gurney, Susan M. R., additional

Published
2018
Full Text
View/download PDF

9. Developing equine mtDNA profiling for forensic application.

Author

Gurney, Susan M. R., Schneider, Sandra, Pflugradt, René, Barrett, Elizabeth, Forster, Anna Catharina, Brinkmann, Bernd, Jansen, Thomas, and Forster, Peter

Subjects
*FORENSIC sciences, *HORSES, *DNA fingerprinting, *MITOCHONDRIAL DNA, *LIVESTOCK
Abstract

Horse mtDNA profiling can be useful in forensic work investigating degraded samples, hair shafts or highly dilute samples. Degraded DNA often does not allow sequencing of fragments longer than 200 nucleotides. In this study we therefore search for the most discriminatory sections within the hypervariable horse mtDNA control region. Among a random sample of 39 horses, 32 different sequences were identified in a stretch of 921 nucleotides. The sequences were assigned to the published mtDNA types A-G, and to a newly labelled minor type H. The random match probability within the analysed samples is 3.61%, and the average pairwise sequence difference is 15 nucleotides. In a 'sliding window' analysis of 200-nucleotide sections of the mtDNA control region, we find that the known repetitive central motif divides the mtDNA control region into a highly diverse segment and a markedly less discriminatory segment. [ABSTRACT FROM AUTHOR]

Published
2010
Full Text
View/download PDF

10. Complete Genome Sequences of Seven EA Cluster Microbacteriophages, Bustleton, MillyPhilly, Riyhil, Phriends, Pherbot, PrincePhergus, and TinSulphur.

Author

Nguyen Quach AM, Varghese AE, Siddiq K, Pappano IG, Thaha A, Marcelis TA, Feruku B, Vindyala A, Mohamed R, Johnson KA, Hakim S, Sekar S, Vinnakota P, Borsha NH, McKenzie R, Ailani SS, Patel S, Beggarly VA, McDonald MT, Dalia RR, Khakhina S, and Gurney SMR

Abstract

Seven EA cluster microbacteriophages were isolated from soil collected around Philadelphia, PA, using the bacterial host Microbacterium foliorum All of these phages have a highly conserved genome with regions of diversity localized to the 3' end. In phage Phriends (EA1 cluster), this region contains an orpham gene with no known function., (Copyright © 2019 Nguyen Quach et al.)

Published
2019
Full Text
View/download PDF

11. Complete Genome Sequences of 12 B1 Cluster Mycobacteriophages, Gareth, JangoPhett, Kailash, MichaelPhcott, PhenghisKhan, Phleuron, Phergie, PhrankReynolds, PhrodoBaggins, Phunky, Vaticameos, and Virapocalypse.

Author

Apellido KA, Balchander D, Erlich MC, Gocal JK, Gocal WA, Haile S, Kang AK, Koduri S, Natrajan M, Parikh AA, Tata RK, Walor TA, Wong BM, Nako S, Tran T, Islam E, Mammen MP, Ball SL, Bollivar DW, Butela KA, Pope WH, McDonald MT, Tang CA, Dalia RR, Smith KPW, Little JL, Moyer AE, and Gurney SMR

Abstract

Twelve B1 cluster mycobacteriophages were isolated from soil samples collected in Philadelphia, PA, USA, using Mycobacterium smegmatis mc 2 155 as a host, and were sequenced. The genome sequences range in size from 66,887 bp to 68,953 bp in length and have between 99 and 105 putative protein-coding genes.

Published
2019
Full Text
View/download PDF

12. Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih.

Author

Butela KA, Gurney SMR, Hendrickson HL, LeBlanc-Straceski JM, Zimmerman AM, Conant SB, Freed NE, Silander OK, Thomson JJ, Berkes CA, Bertolez C, Davies CG, Elinsky A, Hanlon AJ, Nersesyan J, Patel P, Sherwood J, Tieu Ngo T, Wisniewski KA, Yacoo K, Arendse PM, Bowlen NW, Cunmulaj J, Downs JL, Ferrenberg CA, Gassman AE, Gilligan CER, Gorkiewicz E, Harness C, Huffman A, Jones C, Julien A, Kupic AE, Latu SF, Manning TJ, Maxwell D, Meyer CE, Reardon M, Slaughter M, Swasey R, Tennent RI, Torres V, Waller T, Worcester RM, Yost BL, Cresawn SG, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF, and Kagey JD

Abstract

Seven mycobacteriophages from distinct geographical locations were isolated, using Mycobacterium smegmatis mc 2 155 as the host, and then purified and sequenced. All of the genomes are related to cluster A mycobacteriophages, BobSwaget and Lokk in subcluster A2; Fred313, KADY, Stagni, and StepMih in subcluster A3; and MyraDee in subcluster A18, the first phage to be assigned to that subcluster., (Copyright © 2017 Butela et al.)

Published
2017
Full Text
View/download PDF

13. Suppression of the PI3K subunit p85α delays embryoid body development and inhibits cell adhesion.

Author

Gurney SM, Forster P, Just U, and Schwanbeck R

Subjects
Blotting, Western, Cell Differentiation, Gene Knockdown Techniques, Phosphatidylinositol 3-Kinases chemistry, Phosphatidylinositol 3-Kinases genetics, Polymerase Chain Reaction, RNA, Small Interfering, Cell Adhesion, Embryoid Bodies cytology, Phosphoinositide-3 Kinase Inhibitors
Abstract

Phosphatidylinositol-3-kinases (PI3Ks) exert a variety of signaling functions in eukaryotes. We suppressed the PI3K regulatory subunit p85α using a small interfering RNA (Pik3r1 siRNA) and examined the effects on embryoid body (EB) development in hanging drop culture. We observed a 150% increase in the volume of the treated EBs within 24 h, compared to the negative controls. Fluorescence Activated Cell Sorting (FACS) assays showed that this increase in volume is not due to increased cellular proliferation. Instead, the increase in volume appears to be due to reduced cellular aggregation and adherence. This is further shown by our observation that 40% of treated EBs form twin instead of single EBs, and that they have a significantly reduced ability to adhere to culture dishes when plated. A time course over the first 96 h reveals that the impaired adherence is transient and explained by an initial 12-hour delay in EB development. Quantitative PCR expression analysis suggests that the adhesion molecule integrin-β1 (ITGB1) is transiently downregulated by the p85α suppression. In conclusion we found that suppressing p85α leads to a delay in forming compact EBs, accompanied by a transient inability of the EBs to undergo normal cell-cell and cell-substrate adhesion., (Copyright © 2011 Wiley Periodicals, Inc.)

Published
2011
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results