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Large pre-trained models have achieved notable success across a range of downstream tasks. However, recent research shows that a type of adversarial attack ($\textit{i.e.,}$ backdoor attack) can manipulate the behavior of machine learning models through contaminating their training dataset, posing significant threat in the real-world application of large pre-trained model, especially for those customized models. Therefore, addressing the unique challenges for exploring vulnerability of pre-trained models is of paramount importance. Through empirical studies on the capability for performing backdoor attack in large pre-trained models ($\textit{e.g.,}$ ViT), we find the following unique challenges of attacking large pre-trained models: 1) the inability to manipulate or even access large training datasets, and 2) the substantial computational resources required for training or fine-tuning these models. To address these challenges, we establish new standards for an effective and feasible backdoor attack in the context of large pre-trained models. In line with these standards, we introduce our EDT model, an \textbf{E}fficient, \textbf{D}ata-free, \textbf{T}raining-free backdoor attack method. Inspired by model editing techniques, EDT injects an editing-based lightweight codebook into the backdoor of large pre-trained models, which replaces the embedding of the poisoned image with the target image without poisoning the training dataset or training the victim model. Our experiments, conducted across various pre-trained models such as ViT, CLIP, BLIP, and stable diffusion, and on downstream tasks including image classification, image captioning, and image generation, demonstrate the effectiveness of our method. Our code is available in the supplementary material.

Retrieval-Augmented Generation (RAG) is widely adopted for its effectiveness and cost-efficiency in mitigating hallucinations and enhancing the domain-specific generation capabilities of large language models (LLMs). However, is this effectiveness and cost-efficiency truly a free lunch? In this study, we comprehensively investigate the fairness costs associated with RAG by proposing a practical three-level threat model from the perspective of user awareness of fairness. Specifically, varying levels of user fairness awareness result in different degrees of fairness censorship on the external dataset. We examine the fairness implications of RAG using uncensored, partially censored, and fully censored datasets. Our experiments demonstrate that fairness alignment can be easily undermined through RAG without the need for fine-tuning or retraining. Even with fully censored and supposedly unbiased external datasets, RAG can lead to biased outputs. Our findings underscore the limitations of current alignment methods in the context of RAG-based LLMs and highlight the urgent need for new strategies to ensure fairness. We propose potential mitigations and call for further research to develop robust fairness safeguards in RAG-based LLMs.

Graph neural networks (GNNs) have emerged as a powerful tool for analyzing and learning from complex data structured as graphs, demonstrating remarkable effectiveness in various applications, such as social network analysis, recommendation systems, and drug discovery. However, despite their impressive performance, the fairness problem has increasingly gained attention as a crucial aspect to consider. Existing research in graph learning focuses on either group fairness or individual fairness. However, since each concept provides unique insights into fairness from distinct perspectives, integrating them into a fair graph neural network system is crucial. To the best of our knowledge, no study has yet to comprehensively tackle both individual and group fairness simultaneously. In this paper, we propose a new concept of individual fairness within groups and a novel framework named Fairness for Group and Individual (FairGI), which considers both group fairness and individual fairness within groups in the context of graph learning. FairGI employs the similarity matrix of individuals to achieve individual fairness within groups, while leveraging adversarial learning to address group fairness in terms of both Equal Opportunity and Statistical Parity. The experimental results demonstrate that our approach not only outperforms other state-of-the-art models in terms of group fairness and individual fairness within groups, but also exhibits excellent performance in population-level individual fairness, while maintaining comparable prediction accuracy., Comment: 16 pages, 3 figures

Artificial intelligence (AI), particularly machine learning and deep learning models, has significantly impacted bioinformatics research by offering powerful tools for analyzing complex biological data. However, the lack of interpretability and transparency of these models presents challenges in leveraging these models for deeper biological insights and for generating testable hypotheses. Explainable AI (XAI) has emerged as a promising solution to enhance the transparency and interpretability of AI models in bioinformatics. This review provides a comprehensive analysis of various XAI techniques and their applications across various bioinformatics domains including DNA, RNA, and protein sequence analysis, structural analysis, gene expression and genome analysis, and bioimaging analysis. We introduce the most pertinent machine learning and XAI methods, then discuss their diverse applications and address the current limitations of available XAI tools. By offering insights into XAI's potential and challenges, this review aims to facilitate its practical implementation in bioinformatics research and help researchers navigate the landscape of XAI tools., Comment: 19 pages, 9 figures

As AI systems have obtained significant performance to be deployed widely in our daily live and human society, people both enjoy the benefits brought by these technologies and suffer many social issues induced by these systems. To make AI systems good enough and trustworthy, plenty of researches have been done to build guidelines for trustworthy AI systems. Machine learning is one of the most important parts for AI systems and representation learning is the fundamental technology in machine learning. How to make the representation learning trustworthy in real-world application, e.g., cross domain scenarios, is very valuable and necessary for both machine learning and AI system fields. Inspired by the concepts in trustworthy AI, we proposed the first trustworthy representation learning across domains framework which includes four concepts, i.e, robustness, privacy, fairness, and explainability, to give a comprehensive literature review on this research direction. Specifically, we first introduce the details of the proposed trustworthy framework for representation learning across domains. Second, we provide basic notions and comprehensively summarize existing methods for the trustworthy framework from four concepts. Finally, we conclude this survey with insights and discussions on future research directions., Comment: 38 pages, 15 figures

Tackling unfairness in graph learning models is a challenging task, as the unfairness issues on graphs involve both attributes and topological structures. Existing work on fair graph learning simply assumes that attributes of all nodes are available for model training and then makes fair predictions. In practice, however, the attributes of some nodes might not be accessible due to missing data or privacy concerns, which makes fair graph learning even more challenging. In this paper, we propose FairAC, a fair attribute completion method, to complement missing information and learn fair node embeddings for graphs with missing attributes. FairAC adopts an attention mechanism to deal with the attribute missing problem and meanwhile, it mitigates two types of unfairness, i.e., feature unfairness from attributes and topological unfairness due to attribute completion. FairAC can work on various types of homogeneous graphs and generate fair embeddings for them and thus can be applied to most downstream tasks to improve their fairness performance. To our best knowledge, FairAC is the first method that jointly addresses the graph attribution completion and graph unfairness problems. Experimental results on benchmark datasets show that our method achieves better fairness performance with less sacrifice in accuracy, compared with the state-of-the-art methods of fair graph learning. Code is available at: https://github.com/donglgcn/FairAC.

Anomaly detection and localization of visual data, including images and videos, are of great significance in both machine learning academia and applied real-world scenarios. Despite the rapid development of visual anomaly detection techniques in recent years, the interpretations of these black-box models and reasonable explanations of why anomalies can be distinguished out are scarce. This paper provides the first survey concentrated on explainable visual anomaly detection methods. We first introduce the basic background of image-level and video-level anomaly detection. Then, as the main content of this survey, a comprehensive and exhaustive literature review of explainable anomaly detection methods for both images and videos is presented. Next, we analyze why some explainable anomaly detection methods can be applied to both images and videos and why others can be only applied to one modality. Additionally, we provide summaries of current 2D visual anomaly detection datasets and evaluation metrics. Finally, we discuss several promising future directions and open problems to explore the explainability of 2D visual anomaly detection. The related resource collection is given at https://github.com/wyzjack/Awesome-XAD.